_toc.yml

# Table of contents
# Learn more at https://jupyterbook.org/customize/toc.html
format: jb-book
root: intro
defaults:  # The defaults key will be applied to all chapters and sub-sections
  titlesonly: True
parts:
  - caption: General
    chapters:
    - file: index.rst
      title: Home
    - file: install.rst
      title: Installation
    - file: docs/notebook_development_workflow.rst
      title: Notebook Development Workflow
  - caption: Development
    chapters:
    - file: docs/submitting_notebooks.rst
      title: Submitting Notebooks
    - file: docs/requirements.rst
      title: Requirements file
    - file: docs/notebooks.rst
      title: Jupyter Notebooks
    - file: docs/data_files.rst
      title: Data Files
  - caption: GitHub Guidelines
    chapters:
    - file: docs/github_setup.rst
      title: GitHub Setup
    - file: docs/github_workflow.rst
      title: GitHub Workflow
    - file: docs/github_pr.rst
      title: GitHub PR
  #- caption: Developers and Staff
    # chapters:
    # - file : docs/stsci_notebook_leads.rst
    #   title: STScI Notebook Leads
  - caption: Cross-Instrument
    chapters:
    - file: notebooks/cross_instrument/asdf_example/asdf_example.ipynb
      title: ASDF Example
    - file: notebooks/cross_instrument/background_estimation_imaging/Imaging_Sky_Background_Estimation.ipynb
      title: Complex 2D Background
    - file: notebooks/cross_instrument/composite_model_fitting/specfit_demo_3.ipynb
      title: Composite Model Spectral Fitting
    - file: notebooks/cross_instrument/NIRSpec_MAST_Query/NIRSpec_MAST_Query.ipynb
      title: MAST Query
    - file: notebooks/cross_instrument/rgb_imviz/imviz_rgb_carina.ipynb
      title: RGB images with Imviz
    - file: notebooks/cross_instrument/specviz_notebookGUI_interaction/specviz_notebook_gui_interaction_redshift.ipynb
      title: Specviz Simple Demo
    - file: notebooks/cross_instrument/update_pure_parallel_wcs/NIRISS_correct_pure_parallel_WCS.ipynb
      title: Improving Accuracy of WCS of Pure Parallel Dataset
  - caption: MIRI
    chapters:
    - file: notebooks/MIRI/MRS_Mstar_analysis/JWST_Mstar_dataAnalysis_analysis.ipynb
      title: MRS Mstar - Data Analysis
    - file: notebooks/MIRI/MIRI_IFU_YSOs_in_the_LMC/isha_nayak_ysos_in_the_lmc.ipynb
      title: IFU of YSOs in LMC
    - file: notebooks/MIRI/MIRI_LRS_spectral_extraction/miri_lrs_advanced_extraction_part1.ipynb
      title: LRS Optimal Spectral Extraction
  - caption: NIRCam
    chapters:
    - file: notebooks/NIRCam/aperture_photometry/NIRCam_Aperture_Photometry_Example.ipynb
      title: Point Source Aperture Photometry
    - file: notebooks/NIRCam/NIRCam_photometry/NIRCam_multiband_photometry.ipynb
      title: Extended Aperture Photometry
    - file: notebooks/NIRCam/NIRCam_PSF-matched_photometry/NIRCam_PSF_matched_multiband_photometry.ipynb
      title: Cross-Filter PSF Matching
    - file: notebooks/NIRCam/psf_photometry/NIRCam_PSF_Photometry_Example.ipynb
      title: PSF Photometry
    - file: notebooks/NIRCam/NIRCam_wisp_subtraction/nircam_wisp_subtraction.ipynb
      title: NIRCam Wisp Removal
  - caption: NIRISS
    chapters:
    - file: notebooks/NIRISS/NIRISS_WFSS_postpipeline/00_Optimal_extraction.ipynb
      title: WFSS Spectra - Optimal Extraction
    - file: notebooks/NIRISS/NIRISS_WFSS_postpipeline/01_Combine_and_normalize_1D_spectra.ipynb
      title: WFSS Spectra - Combine and Normalize 1D Spectra
    - file: notebooks/NIRISS/NIRISS_WFSS_postpipeline/02_Cross_correlation_template.ipynb
      title: WFSS Spectra - Cross-Correlation Template
    - file: notebooks/NIRISS/NIRISS_WFSS_postpipeline/03_Spatially_resolved_emission_line_map.ipynb
      title: WFSS Spectra - Emission Line Map
    - file: notebooks/NIRISS/niriss_imaging/niriss-imaging-tutorial.ipynb
      title: NIRISS Imaging Tutorial
    - file: notebooks/NIRISS/NIRISS_WFSS_advanced/00_niriss_mast_query_data_setup.ipynb
      title: NIRISS MAST
    - file: notebooks/NIRISS/NIRISS_WFSS_advanced/01_niriss_wfss_image2_image3.ipynb
      title: Direct imaging for WFSS
    - file: notebooks/NIRISS/NIRISS_WFSS_advanced/02_niriss_wfss_spec2.ipynb
      title: Spec2 pipeline for WFSS

  - caption: NIRSpec
    chapters:
    - file: notebooks/NIRSpec/IFU_cube_continuum_fit/NGC4151_FeII_ContinuumFit.ipynb
      title: IFU Background Subtraction
    - file: notebooks/NIRSpec/cube_fitting/cube_fitting.ipynb
      title: IFU Cube Modeling
    - file: notebooks/NIRSpec/ifu_optimal/ifu_optimal.ipynb
      title: IFU Optimal Spectral Extraction
    - file: notebooks/NIRSpec/optimal_extraction/Spectral_Extraction-static.ipynb
      title: MOS Optimal Extraction
    - file: notebooks/NIRSpec/mos_spectroscopy_advanced/MOSspec_advanced.ipynb
      title: MOS Spectroscopy of Extragalactic Field
    - file: notebooks/NIRSpec/transit_spectroscopy_notebook/Exoplanet_Transmission_Spectra_JWST.ipynb
      title: BOTS Time Series Observations
    - file: notebooks/NIRSpec/galaxy_redshift/redshift_fitting.ipynb
      title: Redshift and Template Fitting
    - file: notebooks/NIRSpec/NIRSpec_NSClean/FS_NSClean_example.ipynb
      title: FS Products with NSClean
    - file: notebooks/NIRSpec/NIRSpec_NSClean/IFU_NSClean_example.ipynb
      title: IFU Products with NSClean
    - file: notebooks/NIRSpec/NIRSpec_NSClean/MOS_NSClean_example.ipynb
      title: MOS Products with NSClean
    - file: notebooks/NIRSpec/NIRSpec_NSClean/BOTS_NSClean_example.ipynb
      title: BOTS Products with NSClean