Decoupled from the old spatstat

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: spatstat.data
-Version: 1.7-0
-Date: 2020-12-16
-Title: Datasets for 'spatstat'
+Version: 2.0-0
+Date: 2021-02-10
+Title: Datasets for 'spatstat' Family
 Authors@R: c(person("Adrian", "Baddeley", 
                     role = c("aut", "cre"),
        	            email = "[email protected]",
@@ -13,14 +13,89 @@ Authors@R: c(person("Adrian", "Baddeley",
 	    person("Ege",   "Rubak", 
                     role = "aut",
 		    email = "[email protected]",
-		    comment=c(ORCID="0000-0002-6675-533X")))
+		    comment=c(ORCID="0000-0002-6675-533X")),
+            person("W", "Aherne", role="ctb"),
+            person("Freda", "Alexander", role="ctb"),
+            person("Qi Wei", "Ang", role="ctb"),
+            person("Sourav", "Banerjee", role="ctb"),
+            person("Mark", "Berman", role="ctb"),
+            person("R", "Bernhardt", role="ctb"),
+            person("Thomas", "Berndtsen", role="ctb"),
+            person("Andrew", "Bevan", role="ctb"),
+            person("Jeffrey", "Betts", role="ctb"),
+            person("Ray", "Cartwright", role="ctb"),
+            person("Richard", "Condit", role="ctb"),
+            person("Francis", "Crick", role="ctb"),
+            person("Marcelino", "de la Cruz Rot", role="ctb"),
+            person("Jack", "Cuzick", role="ctb"),
+            person("Peter", "Diggle", role="ctb"),
+            person("Michael", "Drinkwater", role="ctb"),
+            person("Stephen", "Eglen", role="ctb"),
+            person("Robert", "Edwards", role="ctb"),
+            person("AE", "Esler", role="ctb"),
+            person("Gregory", "Evans", role="ctb"),
+            person("Bernard", "Fingleton", role="ctb"),
+            person("Olivier", "Flores", role="ctb"),
+            person("David", "Ford", role="ctb"),
+            person("Robin", "Foster", role="ctb"),
+            person("Janet", "Franklin", role="ctb"),
+            person("Neba", "Funwi-Gabga", role="ctb"),
+            person("DJ", "Gerrard", role="ctb"),
+            person("Andy", "Green", role="ctb"),
+            person("Tim", "Griffin", role="ctb"),
+            person("Ute", "Hahn", role="ctb"),
+            person("RD", "Harkness", role="ctb"),
+            person("Arthur", "Hickman", role="ctb"),
+            person("Stephen", "Hubbell", role="ctb"),
+            person("Austin", "Hughes", role="ctb"),
+            person("Jonathan", "Huntington", role="ctb"),
+            person("MJ", "Hutchings", role="ctb"),
+            person("Valerie", "Isham", role="ctb"),
+            person("Aruna", "Jammalamadaka", role="ctb"),
+            person("Carl", "Knox-Robinson", role="ctb"),
+            person("Mahdieh", "Khanmohammadi", role="ctb"),
+            person("Tero", "Kokkila", role="ctb"),
+            person("Bas", "Kooijman", role="ctb"),
+            person("Kenneth", "Kosik", role="ctb"),
+            person("Peter", "Kovesi", role="ctb"),
+            person("Lily", "Kozmian-Ledward", role="ctb"),
+            person("Robert", "Lamb", role="ctb"),
+            person("NA", "Laskurain", role="ctb"),
+            person("George", "Leser", role="ctb"),
+            person("Marie-Colette", "van Lieshout", role="ctb"),
+            person("AF", "Mark", role="ctb"),
+            person("Jorge", "Mateu", role="ctb"),
+            person("Annikki", "Makela", role="ctb"),
+            person("Enrique", "Miranda", role="ctb"),
+            person("Nicoletta", "Nava", role="ctb"),
+            person("M", "Numata", role="ctb"),
+            person("Matti", "Nummelin", role="ctb"),
+            person("Jens Randel", "Nyengaard", role="ctb"),
+            person("Yosihiko", "Ogata", role="ctb"),
+            person("Antti", "Penttinen", role="ctb"),
+            person("Sandra", "Pereira", role="ctb"),
+            person("Nicolas", "Picard", role="ctb"),
+            person("William", "Platt", role="ctb"),
+            person("Stephen", "Rathbun", role="ctb"),
+            person("Brian", "Ripley", role="ctb"),
+            person("Dietrich", "Stoyan", role="ctb"),
+            person("David", "Strauss", role="ctb"),
+            person("L", "Strand", role="ctb"),
+            person("Masaharu", "Tanemura", role="ctb"),
+            person("Graham", "Upton", role="ctb"),
+            person("Bill", "Venables", role="ctb"),
+            person("Sasha", "Voss", role="ctb"),
+            person("Rasmus", "Waagepetersen", role="ctb"),
+            person("Keith", "Watkins", role="ctb"),
+            person("H", "Wendrock", role="ctb")
+		    )
 Maintainer: Adrian Baddeley <[email protected]>
 Depends: R (>= 3.5.0)
-Suggests: spatstat (>= 1.55-0)
 Imports: spatstat.utils, Matrix
-Description: Contains all the datasets for the 'spatstat' package.
+Suggests: spatstat.geom, spatstat.core, spatstat.linnet
+Description: Contains all the datasets for the 'spatstat' family of packages.
 License: GPL (>= 2)
-URL: http://spatstat.org
+URL: http://spatstat.org/
 LazyData: true
 NeedsCompilation: no
 ByteCompile: true

inst/doc/packagesizes.txt

@@ -10,3 +10,4 @@ date version nhelpfiles nobjects ndatasets Rlines srclines
 "2018-09-07" "1.3-2" 57 0 55 0 0
 "2020-12-06" "1.6-2" 58 0 56 0 0
 "2020-12-16" "1.7-0" 58 0 56 0 0
+"2021-02-10" "2.0-0" 58 0 56 0 0

man/Kovesi.Rd

@@ -12,7 +12,7 @@
 }
 \usage{data(Kovesi)}
 \format{
-  A \code{\link[spatstat]{hyperframe}} with the following columns:
+  A \code{\link[spatstat.geom]{hyperframe}} with the following columns:
 
   \tabular{ll}{
     \code{linear} \tab Logical: whether the sequence is linear. \cr
@@ -80,7 +80,7 @@
 \examples{
   Kovesi
   LinearBMW <- Kovesi$values[[28]]
-  if(require(spatstat)) {
+  if(require(spatstat.geom)) {
   plot(colourmap(LinearBMW, range=c(0,1)))
 
   ## The following would be suitable for spatstat.options(image.colfun)

man/amacrine.Rd

@@ -17,7 +17,7 @@ A marked point pattern.
     \code{marks} \tab factor with levels \code{off} and \code{on} \cr
                  \tab indicating ``off'' and ``on'' cells
     }
-  See \code{\link[spatstat]{ppp.object}} for details of the format.
+  See \code{\link[spatstat.geom]{ppp.object}} for details of the format.
 }
 \usage{data(amacrine)}
 \source{Peter Diggle, personal communication}

man/anemones.Rd

@@ -39,12 +39,12 @@
   representing the point pattern of anemone locations.
   It is a marked point pattern with numeric marks representing
   anemone diameter.
-  See \code{\link[spatstat]{ppp.object}} for details of the format.
+  See \code{\link[spatstat.geom]{ppp.object}} for details of the format.
 }
 \usage{data(anemones)}
 \examples{
   data(anemones)
-  if(require(spatstat)) {
+  if(require(spatstat.geom)) {
   # plot diameters on same scale as x, y
   plot(anemones, markscale=1)
   }

man/ants.Rd

@@ -77,7 +77,7 @@
 \format{
   \code{ants} is an object of class \code{"ppp"}
   representing the full point pattern of ants' nests.
-  See \code{\link[spatstat]{ppp.object}} for details of the format.
+  See \code{\link[spatstat.geom]{ppp.object}} for details of the format.
   The coordinates are scaled so that 1 unit equals 0.5 feet.
   The points are marked by species (with levels \code{Cataglyphis}
   and \code{Messor}).
@@ -98,7 +98,7 @@
 }
 \usage{data(ants)}
 \examples{
-  if(require(spatstat)) {
+  if(require(spatstat.geom)) {
 
   # Equivalent to Figure 1 of Harkness and Isham (1983)
 

man/austates.Rd

@@ -32,7 +32,7 @@
 }
 \examples{
   data(austates)
-  if(require(spatstat)) {
+  if(require(spatstat.geom)) {
   plot(austates)
   }
 }

man/bdspots.Rd

@@ -81,7 +81,7 @@
 }
 \examples{
 data(bdspots)
-  if(require(spatstat)) {
+  if(require(spatstat.geom)) {
 plot(bdspots, equal.scales=TRUE)
   }
 }

man/bei.Rd

@@ -12,12 +12,12 @@
 \format{
   \code{bei} is an object of class \code{"ppp"}
   representing the point pattern of tree locations.
-  See \code{\link[spatstat]{ppp.object}} for details of the format.
+  See \code{\link[spatstat.geom]{ppp.object}} for details of the format.
 
   \code{bei.extra} is a list containing
   two pixel images, \code{elev} (elevation in metres) and
   \code{grad} (norm of elevation gradient). These pixel images are objects
-  of class \code{"im"}, see \code{\link[spatstat]{im.object}}.
+  of class \code{"im"}, see \code{\link[spatstat.geom]{im.object}}.
 }
 \usage{data(bei)}
 \source{

man/betacells.Rd

@@ -24,7 +24,7 @@
     \code{area} \tab numeric vector giving the \cr
 		\tab areas of cell profiles (in square microns)
   }
-  See \code{\link[spatstat]{ppp.object}} for details of the format.
+  See \code{\link[spatstat.geom]{ppp.object}} for details of the format.
 }
 \usage{data(betacells)}
 \source{
@@ -80,7 +80,7 @@
 }
 \examples{
    plot(betacells)
-  if(require(spatstat)) {
+  if(require(spatstat.geom)) {
    area <- marks(betacells)$area
    plot(betacells \%mark\% sqrt(area/pi), markscale=1)
    }

man/bramblecanes.Rd

@@ -15,7 +15,7 @@
     \code{y} \tab Cartesian \eqn{y}-coordinate of plant \cr
     \code{marks} \tab factor with levels 0,1, 2 indicating age
   }
-  See \code{\link[spatstat]{ppp.object}} for details of the format.
+  See \code{\link[spatstat.geom]{ppp.object}} for details of the format.
 }
 \usage{data(bramblecanes)}
 \source{Hutchings (1979), data published in Diggle (1983)}

man/bronzefilter.Rd

@@ -28,13 +28,13 @@
     \code{y} \tab Cartesian \eqn{y}-coordinate of bronze grain profile centre\cr
     \code{marks} \tab radius of bronze grain profile
   }
-  See \code{\link[spatstat]{ppp.object}} for details of the format.
+  See \code{\link[spatstat.geom]{ppp.object}} for details of the format.
   All coordinates are recorded in mm.
 }
 \usage{data(bronzefilter)}
 \examples{
   data(bronzefilter)
-  if(require(spatstat)) {
+  if(require(spatstat.geom)) {
   plot(bronzefilter, markscale=2)
   }
 }

man/cells.Rd

@@ -17,7 +17,7 @@ point pattern.
 \format{
   An object of class \code{"ppp"}
   representing the point pattern of cell centres.
-  See \code{\link[spatstat]{ppp.object}} for details of the format.
+  See \code{\link[spatstat.geom]{ppp.object}} for details of the format.
 }
 \usage{data(cells)}
 \source{Crick and Ripley, see Ripley (1977)}

man/cetaceans.Rd

@@ -19,7 +19,7 @@
 }
 \format{
   The object \code{cetaceans} is a \emph{hyperframe} (see
-  \code{\link[spatstat]{hyperframe}()}) with 9 rows and 4 columns.
+  \code{\link[spatstat.geom]{hyperframe}()}) with 9 rows and 4 columns.
   Each row of this hyperframe represents a replicate survey.
   The columns are \code{whales}, \code{dolphins}, \code{fish}
   and \code{plankton}.
@@ -33,8 +33,8 @@
   It currently contains only one entry, \code{patterns}, which
   contains the same information as \code{cetaceans} in another form.
   This is a list, of class \code{solist}
-  (\dQuote{spatial object list}; see \code{\link[spatstat]{solist}()},
-  \code{\link[spatstat]{as.solist}()}).
+  (\dQuote{spatial object list}; see \code{\link[spatstat.geom]{solist}()},
+  \code{\link[spatstat.geom]{as.solist}()}).
   It is a list of length 9, in which each entry is a marked point
   pattern, representing the result of one survey. 
   Each pattern was obtained by superimposing the
@@ -83,7 +83,7 @@
 }
 
 \examples{
-  if(require(spatstat)) {
+  if(require(spatstat.core)) {
      cet <- cetaceans
      cet$dMplank <- with(cet, distfun(plankton, undef=20))
      cet$dMfish <- with(cet, distfun(fish, undef=20))

man/chicago.Rd

@@ -28,19 +28,19 @@
 
   The dataset \code{chicago} is an object of class \code{"lpp"}
   representing a point pattern on a linear network.
-  See \code{\link[spatstat]{lpp}} for further information on the format.
+  See \code{\link[spatstat.linnet]{lpp}} for further information on the format.
 
   These data were published and analysed in
   Ang, Baddeley and Nair (2012).
 } 
 \format{
   Object of class \code{"lpp"}. 
-  See \code{\link[spatstat]{lpp}}.
+  See \code{\link[spatstat.linnet]{lpp}}.
 }
 \usage{data(chicago)}
 \examples{
 data(chicago)
-  if(require(spatstat)) {
+  if(require(spatstat.linnet)) {
 plot(chicago)
 plot(as.linnet(chicago), main="Chicago Street Crimes",col="green")
 plot(as.ppp(chicago), add=TRUE, col="red", chars=c(16,2,22,17,24,15,6))

man/chorley.Rd

@@ -20,7 +20,7 @@
     \tab indicating whether this is a case of cancer of the larynx\cr
     \tab or cancer of the lung.
   }
-  See \code{\link[spatstat]{ppp.object}} for details of the format.
+  See \code{\link[spatstat.geom]{ppp.object}} for details of the format.
 
   The dataset \code{chorley.extra} is a list with two components.
   The first component \code{plotit} is a function which will 
@@ -34,7 +34,7 @@
 \usage{data(chorley)}
 \examples{
     chorley
-  if(require(spatstat)) {
+  if(require(spatstat.geom)) {
     summary(chorley)
     chorley.extra$plotit()
   }
@@ -80,8 +80,8 @@
   Note that, due to the rounding of spatial coordinates,
   the data contain duplicated points (two points at the
   same location). To determine which points are duplicates,
-  use \code{\link[spatstat]{duplicated.ppp}}.
-  To remove the duplication, use \code{\link[spatstat]{unique.ppp}}.
+  use \code{\link[spatstat.geom]{duplicated.ppp}}.
+  To remove the duplication, use \code{\link[spatstat.geom]{unique.ppp}}.
 }
 \references{
   Baddeley, A., Turner, R., \Moller, J. and Hazelton, M. (2005)

man/clmfires.Rd

@@ -51,7 +51,7 @@
 } 
 \format{
   \code{clmfires} is a marked point pattern (object of class \code{"ppp"}). 
-  See \code{\link[spatstat]{ppp.object}}.
+  See \code{\link[spatstat.geom]{ppp.object}}.
 
   \code{clmfires.extra} is a list with two components, named
   \code{clmcov100} and \code{clmcov200}, which are lists of pixel images
@@ -73,7 +73,7 @@ patterns due to \dQuote{jittering} having been applied in order to
 avoid such duplication.  It is not clear just \emph{how} the fire
 locations were jittered.  It seems unlikely that the jittering was
 done using the \code{jitter()} function from \code{R} or the
-\pkg{spatstat} function \code{\link[spatstat]{rjitter}}.
+\pkg{spatstat} function \code{\link[spatstat.geom]{rjitter}}.
 
 Of course there are many sets of points which are \emph{virtually}
 identical, being separated by distances induced by the jittering.
@@ -87,7 +87,7 @@ for the years 1998 to 2003.
 
 \usage{data(clmfires)}
 \examples{
-  if(require(spatstat)) {
+  if(require(spatstat.geom)) {
 plot(clmfires, which.marks="cause", cols=2:5, cex=0.25)
 plot(clmfires.extra$clmcov100)
 # Split the clmfires pattern by year and plot the first and last years:

man/concrete.Rd

@@ -17,8 +17,8 @@
 }
 \details{
   The window of the point pattern is a binary mask
-  (window of type \code{"mask"}; see \code{\link[spatstat]{owin}}
-  and \code{\link[spatstat]{as.mask}} for more information
+  (window of type \code{"mask"}; see \code{\link[spatstat.geom]{owin}}
+  and \code{\link[spatstat.geom]{as.mask}} for more information
   about this type of window).
   This window in effect consists of the
   cement paste matrix, or equivalently of the complement (in the
@@ -51,7 +51,7 @@
   processes. \emph{Cement and Concrete Research} \bold{115} 124 -- 132.
 }
 \examples{
-  if(require(spatstat)) {
+  if(require(spatstat.geom)) {
      plot(concrete,chars="+",cols="blue",col="yellow")
      # The aggregate is in yellow; the cement paste matrix is in white.