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sct_label_vertebrae seems wrong #53

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zgm0407 opened this issue Sep 24, 2020 · 1 comment
Open

sct_label_vertebrae seems wrong #53

zgm0407 opened this issue Sep 24, 2020 · 1 comment

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@zgm0407
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zgm0407 commented Sep 24, 2020

Description

sct_label_vertebrae woks well overall, but it seemed something wrong with few case in which 2 labels for 3 verts.

Steps to Reproduce

  1. Context (system versions)
    docker sct_4.2.1

sct_label_vertebrae -i t2_r.nii.gz -s t2_seg0.nii.gz -c t2 -initlabel label_c2c3.nii.gz -qc "/home/sct/docker_shared/MR202009_qc/t2_label_qc"
t2_r.nii.gz
t2_seg0.nii.gz
label_c2c3.nii.gz
label_vert

Expected behavior:

Actual behavior:

@jcohenadad
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hi,
thank you for your feedback. Could you please post this in SCT's forum, which is more active. thank you

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