diff --git a/single_subject/batch_single_subject.sh b/single_subject/batch_single_subject.sh index 6cedc7d..2c531e0 100755 --- a/single_subject/batch_single_subject.sh +++ b/single_subject/batch_single_subject.sh @@ -217,8 +217,6 @@ sct_register_multimodal -i t1_crop.nii.gz -d ../t2/t2_crop.nii.gz -param step=1, # ====================================================================================================================== cd ../t2_lumbar -# Crop full-body image to isolate the lumbar region (lowest 200 axial slices) -sct_crop_image -i t2.nii.gz -zmax 200 -o t2_lumbar.nii.gz # Use lumbar-specific `sct_deepseg` model to segment the spinal cord sct_deepseg -i t2_lumbar.nii.gz -task seg_lumbar_sc_t2w diff --git a/single_subject/data/t2_lumbar/t2.nii.gz b/single_subject/data/t2_lumbar/t2.nii.gz deleted file mode 100644 index ba47c6d..0000000 Binary files a/single_subject/data/t2_lumbar/t2.nii.gz and /dev/null differ diff --git a/single_subject/data/t2_lumbar/t2_lumbar.nii.gz b/single_subject/data/t2_lumbar/t2_lumbar.nii.gz new file mode 100644 index 0000000..a949a45 Binary files /dev/null and b/single_subject/data/t2_lumbar/t2_lumbar.nii.gz differ