diff --git a/single_subject/batch_single_subject.sh b/single_subject/batch_single_subject.sh index bacd90c..e53aeb5 100755 --- a/single_subject/batch_single_subject.sh +++ b/single_subject/batch_single_subject.sh @@ -129,7 +129,7 @@ sct_compute_compression -i t2_compressed_seg.nii.gz -vertfile t2_compressed_seg_ # Registering T2 data to the PAM50 template # ====================================================================================================================== - +cd ../t2 # Register t2->template. sct_register_to_template -i t2.nii.gz -s t2_seg.nii.gz -l t2_labels_vert.nii.gz -c t2 -qc ~/qc_singleSubj # Note: By default the PAM50 template is selected. You can also select your own template using flag -t.