From f481042097e659f0f22e5bc8422b34afb1d5b96b Mon Sep 17 00:00:00 2001 From: Joshua Newton Date: Mon, 30 Oct 2023 18:16:49 -0400 Subject: [PATCH] `batch_single_subject.sh`: Fix remaining instance of t2.nii.gz --- single_subject/batch_single_subject.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/single_subject/batch_single_subject.sh b/single_subject/batch_single_subject.sh index 2c531e0..51f4e81 100755 --- a/single_subject/batch_single_subject.sh +++ b/single_subject/batch_single_subject.sh @@ -227,7 +227,7 @@ sct_deepseg -i t2_lumbar.nii.gz -task seg_lumbar_sc_t2w # # However, since this is an automated script with example data, we will place the labels at known locations for the # sake of reproducing the results in the tutorial. -sct_label_utils -i t2.nii.gz -create 22,77,187,17:27,79,80,60 -o t2_lumbar_labels.nii.gz +sct_label_utils -i t2_lumbar.nii.gz -create 22,77,187,17:27,79,80,60 -o t2_lumbar_labels.nii.gz # Register the image to the template using segmentation and labels sct_register_to_template -i t2_lumbar.nii.gz \