circle.yml

dependencies:
  cache_directories:
    - "~/examples/data"
    - "~/examples/fsdata"
    - "~/examples/feeds"
    - "~/mcr"
    - "~/spm12"
    - "~/fsl"
    - "~/examples/fsl_course_data"
  override:
    - pip install --upgrade pip
    - pip install -e .
    - pip install matplotlib sphinx ipython boto
    - gem install fakes3
    - if [[ ! -d ~/fsl ]]; then wget "http://fsl.fmrib.ox.ac.uk/fsldownloads/fsl-5.0.9-centos6_64.tar.gz"; tar zxvf fsl-5.0.9-centos6_64.tar.gz; mv fsl ~/fsl; fi
    - if [[ ! -d ~/examples/data ]]; then wget "http://tcpdiag.dl.sourceforge.net/project/nipy/nipype/nipype-0.2/nipype-tutorial.tar.bz2"; tar jxvf nipype-tutorial.tar.bz2; mkdir ~/examples; mv nipype-tutorial/* ~/examples/; fi
    # we download this manually because CircleCI does not cache apt
    - if [[ ! -d ~/examples/feeds ]]; then wget "http://fsl.fmrib.ox.ac.uk/fsldownloads/fsl-5.0.9-feeds.tar.gz"; tar zxvf fsl-5.0.8-feeds.tar.gz; mv feeds ~/examples/; fi
    - if [[ ! -d ~/examples/fsl_course_data ]]; then wget -c "http://fsl.fmrib.ox.ac.uk/fslcourse/fdt1.tar.gz" ; wget -c "http://fsl.fmrib.ox.ac.uk/fslcourse/fdt2.tar.gz"; wget -c "http://fsl.fmrib.ox.ac.uk/fslcourse/tbss.tar.gz"; mkdir ~/examples/fsl_course_data; tar zxvf fdt1.tar.gz -C ~/examples/fsl_course_data; tar zxvf fdt2.tar.gz -C ~/examples/fsl_course_data; tar zxvf tbss.tar.gz -C ~/examples/fsl_course_data; fi
    - bash ~/nipype/tools/install_spm_mcr.sh
    - mkdir -p ~/.nipype && echo "[logging]" > ~/.nipype/nipype.cfg && echo "workflow_level = DEBUG" >> ~/.nipype/nipype.cfg && echo "interface_level = DEBUG" >> ~/.nipype/nipype.cfg && echo "filemanip_level = DEBUG" >> ~/.nipype/nipype.cfg
test:
  override:
    - nosetests --with-doctest --logging-level=DEBUG --verbosity=3:
        environment:
          SPMMCRCMD: "$HOME/spm12/run_spm12.sh $HOME/mcr/v85/ script"
          FORCE_SPMMCR: 1
          FSL_COURSE_DATA: "$HOME/examples/fsl_course_data"
          FSLDIR: "$HOME/fsl/"
          PATH: "$HOME/fsl/bin:$PATH"
          LD_LIBRARY_PATH: "$HOME/fsl/lib"
          FSLOUTPUTTYPE: "NIFTI_GZ"
        timeout: 2600
    - set -o pipefail && cd doc && make html 2>&1 | tee ~/log.txt
    - cat ~/log.txt && if grep -q "ERROR" ~/log.txt; then false; else true; fi
    - python ~/nipype/tools/run_examples.py test_spm Linear workflow3d workflow4d:
        pwd: ../examples
        environment:
          SPMMCRCMD: "$HOME/spm12/run_spm12.sh $HOME/mcr/v85/ script"
          FORCE_SPMMCR: 1
          FSLDIR: "$HOME/fsl/"
          PATH: "$HOME/fsl/bin:$PATH"
          LD_LIBRARY_PATH: "$HOME/fsl/lib"
          FSLOUTPUTTYPE: "NIFTI_GZ"
        timeout: 1600
    - python ~/nipype/tools/run_examples.py fmri_fsl_feeds Linear l1pipeline:
        pwd: ../examples
        environment:
          FSLDIR: "$HOME/fsl/"
          PATH: "$HOME/fsl/bin:$PATH"
          LD_LIBRARY_PATH: "$HOME/fsl/lib"
          FSLOUTPUTTYPE: "NIFTI_GZ"
    - python ~/nipype/tools/run_examples.py fmri_spm_dartel Linear level1 l2pipeline:
        pwd: ../examples
        environment:
          SPMMCRCMD: "$HOME/spm12/run_spm12.sh $HOME/mcr/v85/ script"
          FORCE_SPMMCR: 1
          FSLDIR: "$HOME/fsl/"
          PATH: "$HOME/fsl/bin:$PATH"
          LD_LIBRARY_PATH: "$HOME/fsl/lib"
          FSLOUTPUTTYPE: "NIFTI_GZ"
        timeout: 1600
    - python ~/nipype/tools/run_examples.py fmri_fsl_reuse Linear level1_workflow:
        pwd: ../examples
        environment:
          FSLDIR: "$HOME/fsl/"
          PATH: "$HOME/fsl/bin:$PATH"
          LD_LIBRARY_PATH: "$HOME/fsl/lib"
          FSLOUTPUTTYPE: "NIFTI_GZ"
    - python ~/nipype/tools/run_examples.py fmri_spm_nested Linear level1 l2pipeline:
        pwd: ../examples
        environment:
          SPMMCRCMD: "$HOME/spm12/run_spm12.sh $HOME/mcr/v85/ script"
          FORCE_SPMMCR: 1
          FSLDIR: "$HOME/fsl/"
          PATH: "$HOME/fsl/bin:$PATH"
          LD_LIBRARY_PATH: "$HOME/fsl/lib"
          FSLOUTPUTTYPE: "NIFTI_GZ"

general:
  artifacts:
    - "doc/_build/html"
    - "~/log.txt"