From 2e7dd3fd45af8403a8bba8f8afc4ee947e8d8533 Mon Sep 17 00:00:00 2001 From: David W Bitner Date: Thu, 5 Dec 2024 16:18:45 -0600 Subject: [PATCH 1/4] update dependencies, fixes for postgres 17 --- .pre-commit-config.yaml | 9 +- docker/pgstac/Dockerfile | 3 +- docker/pypgstac/bin/test | 6 +- scripts/runinpypgstac | 10 +- .../migrations/pgstac.0.9.1-unreleased.sql | 164 ++++++++++++++++++ src/pgstac/migrations/pgstac.unreleased.sql | 19 +- src/pgstac/pgstac.sql | 20 ++- src/pgstac/sql/003b_partitions.sql | 17 +- src/pgstac/sql/004_search.sql | 1 + src/pgstac/sql/004a_collectionsearch.sql | 3 +- src/pgstac/tests/pgtap/001_core.sql | 32 ---- src/pgstac/tests/pgtap/9999_readonly.sql | 31 ++++ src/pypgstac/pyproject.toml | 15 +- src/pypgstac/src/pypgstac/hydration.py | 2 +- src/pypgstac/src/pypgstac/load.py | 25 ++- .../tests/hydration/test_base_item.py | 5 +- .../tests/hydration/test_dehydrate.py | 9 +- src/pypgstac/tests/hydration/test_hydrate.py | 2 +- 18 files changed, 279 insertions(+), 94 deletions(-) create mode 100644 src/pgstac/tests/pgtap/9999_readonly.sql diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index da4e1d67..89ad3173 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -18,12 +18,15 @@ repos: - id: check-symlinks -- repo: https://github.com/charliermarsh/ruff-pre-commit - rev: 'v0.0.284' +- repo: https://github.com/astral-sh/ruff-pre-commit + rev: 'v0.8.2' hooks: - id: ruff - files: pypgstac\/.*\.py$ + files: src/pypgstac\/.*\.py$ args: [--fix, --exit-non-zero-on-fix] + - id: ruff-format + files: src/pypgstac\/.*\.py$ + - repo: local hooks: diff --git a/docker/pgstac/Dockerfile b/docker/pgstac/Dockerfile index 7035df7d..14114be1 100644 --- a/docker/pgstac/Dockerfile +++ b/docker/pgstac/Dockerfile @@ -1,9 +1,10 @@ -ARG PG_MAJOR=15 +ARG PG_MAJOR=17 ARG POSTGIS_MAJOR=3 # Base postgres image that pgstac can be installed onto FROM postgres:${PG_MAJOR}-bullseye AS pgstacbase ARG POSTGIS_MAJOR +ARG PG_MAJOR RUN \ apt-get update \ && apt-get upgrade -y \ diff --git a/docker/pypgstac/bin/test b/docker/pypgstac/bin/test index 5e61d1bb..33491850 100755 --- a/docker/pypgstac/bin/test +++ b/docker/pypgstac/bin/test @@ -46,10 +46,10 @@ function test_formatting(){ cd $SRCDIR/pypgstac echo "Running ruff" - ruff -n python tests + ruff check src/pypgstac tests echo "Running mypy" - mypy python + mypy src/pypgstac echo "Checking if there are any staged migrations." find $SRCDIR/pgstac/migrations | grep 'staged' && { echo "There are staged migrations in pypgstac/migrations. Please check migrations and remove staged suffix."; exit 1; } @@ -82,7 +82,7 @@ DROP DATABASE IF EXISTS pgstac_test_pgtap WITH (force); EOSQL if [[ $(echo "$TESTOUTPUT" | grep -e '^not') ]]; then echo "PGTap tests failed." - echo "$TESTOUTPUT" + echo "$TESTOUTPUT" | awk NF exit 1 else echo "PGTap Tests Passed!" diff --git a/scripts/runinpypgstac b/scripts/runinpypgstac index c25b4c00..bbd0517e 100755 --- a/scripts/runinpypgstac +++ b/scripts/runinpypgstac @@ -39,14 +39,20 @@ if [[ $BUILD == 1 ]]; then sleep 4 fi PGSTAC_RUNNING=$(docker compose ps pgstac --status running -q) +echo "PGSTAC_RUNNING=$PGSTAC_RUNNING" if [[ $CPFILES == 1 ]]; then - docker ps | grep pypgstacworker - [[ $? == 0 ]] && echo "Killing pypgstacworker" && docker kill pypgstacworker + echo "Checking if pypgstacworker is running" + docker ps | grep pypgstacworker && echo "Killing pypgstacworker" && docker kill pypgstacworker || echo "pypgstac worker not running" + echo "Running pypgstac worker" docker compose run -d --rm --name pypgstacworker pypgstac /bin/bash + echo "Executing ${CONTAINER_ARGS[@]} in pypgstac worker" docker compose exec pypgstac "${CONTAINER_ARGS[@]}" + echo "copying datafiles to host" docker cp pypgstacworker:/opt/src $SCRIPT_DIR/.. + echo "killing pypgstac worker" docker kill pypgstacworker else + echo "Running ${CONTAINER_ARGS[@]} in pypgstacworker" docker compose run -T --rm pypgstac "${CONTAINER_ARGS[@]}" fi JOBEXITCODE=$? diff --git a/src/pgstac/migrations/pgstac.0.9.1-unreleased.sql b/src/pgstac/migrations/pgstac.0.9.1-unreleased.sql index b3358eeb..4f34048f 100644 --- a/src/pgstac/migrations/pgstac.0.9.1-unreleased.sql +++ b/src/pgstac/migrations/pgstac.0.9.1-unreleased.sql @@ -251,6 +251,47 @@ END; $function$ ; +CREATE OR REPLACE FUNCTION pgstac.chunker(_where text, OUT s timestamp with time zone, OUT e timestamp with time zone) + RETURNS SETOF record + LANGUAGE plpgsql +AS $function$ +DECLARE + explain jsonb; +BEGIN + IF _where IS NULL THEN + _where := ' TRUE '; + END IF; + EXECUTE format('EXPLAIN (format json) SELECT 1 FROM items WHERE %s;', _where) + INTO explain; + RAISE DEBUG 'EXPLAIN: %', explain; + + RETURN QUERY + WITH t AS ( + SELECT j->>0 as p FROM + jsonb_path_query( + explain, + 'strict $.**."Relation Name" ? (@ != null)' + ) j + ), + parts AS ( + SELECT sdate, edate FROM t JOIN partition_steps ON (t.p = name) + ), + times AS ( + SELECT sdate FROM parts + UNION + SELECT edate FROM parts + ), + uniq AS ( + SELECT DISTINCT sdate FROM times ORDER BY sdate + ), + last AS ( + SELECT sdate, lead(sdate, 1) over () as edate FROM uniq + ) + SELECT sdate, edate FROM last WHERE edate IS NOT NULL; +END; +$function$ +; + CREATE OR REPLACE FUNCTION pgstac.collection_search(_search jsonb DEFAULT '{}'::jsonb) RETURNS jsonb LANGUAGE plpgsql @@ -274,6 +315,7 @@ BEGIN FROM collection_search_rows(_search) c; number_returned := jsonb_array_length(out_records); + RAISE DEBUG 'nm: %, nr: %, l:%, o:%', number_matched, number_returned, _limit, _offset; @@ -346,6 +388,49 @@ END; $function$ ; +create or replace view "pgstac"."partition_sys_meta" as SELECT (parse_ident((pg_partition_tree.relid)::text))[cardinality(parse_ident((pg_partition_tree.relid)::text))] AS partition, + replace(replace( + CASE + WHEN (pg_partition_tree.level = 1) THEN pg_get_expr(c.relpartbound, c.oid) + ELSE pg_get_expr(parent.relpartbound, parent.oid) + END, 'FOR VALUES IN ('''::text, ''::text), ''')'::text, ''::text) AS collection, + pg_partition_tree.level, + c.reltuples, + c.relhastriggers, + COALESCE(constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity'::timestamp with time zone, 'infinity'::timestamp with time zone, '[]'::text)) AS partition_dtrange, + COALESCE((dt_constraint(edt.oid)).dt, constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity'::timestamp with time zone, 'infinity'::timestamp with time zone, '[]'::text)) AS constraint_dtrange, + COALESCE((dt_constraint(edt.oid)).edt, tstzrange('-infinity'::timestamp with time zone, 'infinity'::timestamp with time zone, '[]'::text)) AS constraint_edtrange + FROM (((pg_partition_tree('items'::regclass) pg_partition_tree(relid, parentrelid, isleaf, level) + JOIN pg_class c ON (((pg_partition_tree.relid)::oid = c.oid))) + JOIN pg_class parent ON ((((pg_partition_tree.parentrelid)::oid = parent.oid) AND pg_partition_tree.isleaf))) + LEFT JOIN pg_constraint edt ON (((edt.conrelid = c.oid) AND (edt.contype = 'c'::"char")))) + WHERE pg_partition_tree.isleaf; + + +create or replace view "pgstac"."partitions_view" as SELECT (parse_ident((pg_partition_tree.relid)::text))[cardinality(parse_ident((pg_partition_tree.relid)::text))] AS partition, + replace(replace( + CASE + WHEN (pg_partition_tree.level = 1) THEN pg_get_expr(c.relpartbound, c.oid) + ELSE pg_get_expr(parent.relpartbound, parent.oid) + END, 'FOR VALUES IN ('''::text, ''::text), ''')'::text, ''::text) AS collection, + pg_partition_tree.level, + c.reltuples, + c.relhastriggers, + COALESCE(constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity'::timestamp with time zone, 'infinity'::timestamp with time zone, '[]'::text)) AS partition_dtrange, + COALESCE((dt_constraint(edt.oid)).dt, constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity'::timestamp with time zone, 'infinity'::timestamp with time zone, '[]'::text)) AS constraint_dtrange, + COALESCE((dt_constraint(edt.oid)).edt, tstzrange('-infinity'::timestamp with time zone, 'infinity'::timestamp with time zone, '[]'::text)) AS constraint_edtrange, + partition_stats.dtrange, + partition_stats.edtrange, + partition_stats.spatial, + partition_stats.last_updated + FROM ((((pg_partition_tree('items'::regclass) pg_partition_tree(relid, parentrelid, isleaf, level) + JOIN pg_class c ON (((pg_partition_tree.relid)::oid = c.oid))) + JOIN pg_class parent ON ((((pg_partition_tree.parentrelid)::oid = parent.oid) AND pg_partition_tree.isleaf))) + LEFT JOIN pg_constraint edt ON (((edt.conrelid = c.oid) AND (edt.contype = 'c'::"char")))) + LEFT JOIN partition_stats ON (((parse_ident((pg_partition_tree.relid)::text))[cardinality(parse_ident((pg_partition_tree.relid)::text))] = partition_stats.partition))) + WHERE pg_partition_tree.isleaf; + + CREATE OR REPLACE FUNCTION pgstac.stac_search_to_where(j jsonb) RETURNS text LANGUAGE plpgsql @@ -440,6 +525,85 @@ END; $function$ ; +CREATE OR REPLACE FUNCTION pgstac.update_partition_stats(_partition text, istrigger boolean DEFAULT false) + RETURNS void + LANGUAGE plpgsql + STRICT SECURITY DEFINER +AS $function$ +DECLARE + dtrange tstzrange; + edtrange tstzrange; + cdtrange tstzrange; + cedtrange tstzrange; + extent geometry; + collection text; +BEGIN + RAISE NOTICE 'Updating stats for %.', _partition; + EXECUTE format( + $q$ + SELECT + tstzrange(min(datetime), max(datetime),'[]'), + tstzrange(min(end_datetime), max(end_datetime), '[]') + FROM %I + $q$, + _partition + ) INTO dtrange, edtrange; + extent := st_estimatedextent('pgstac', _partition, 'geometry'); + RAISE DEBUG 'Estimated Extent: %', extent; + INSERT INTO partition_stats (partition, dtrange, edtrange, spatial, last_updated) + SELECT _partition, dtrange, edtrange, extent, now() + ON CONFLICT (partition) DO + UPDATE SET + dtrange=EXCLUDED.dtrange, + edtrange=EXCLUDED.edtrange, + spatial=EXCLUDED.spatial, + last_updated=EXCLUDED.last_updated + ; + + SELECT + constraint_dtrange, constraint_edtrange, pv.collection + INTO cdtrange, cedtrange, collection + FROM partitions_view pv WHERE partition = _partition; + REFRESH MATERIALIZED VIEW partitions; + REFRESH MATERIALIZED VIEW partition_steps; + + + RAISE NOTICE 'Checking if we need to modify constraints...'; + RAISE NOTICE 'cdtrange: % dtrange: % cedtrange: % edtrange: %',cdtrange, dtrange, cedtrange, edtrange; + IF + (cdtrange IS DISTINCT FROM dtrange OR edtrange IS DISTINCT FROM cedtrange) + AND NOT istrigger + THEN + RAISE NOTICE 'Modifying Constraints'; + RAISE NOTICE 'Existing % %', cdtrange, cedtrange; + RAISE NOTICE 'New % %', dtrange, edtrange; + PERFORM drop_table_constraints(_partition); + PERFORM create_table_constraints(_partition, dtrange, edtrange); + REFRESH MATERIALIZED VIEW partitions; + REFRESH MATERIALIZED VIEW partition_steps; + END IF; + RAISE NOTICE 'Checking if we need to update collection extents.'; + IF get_setting_bool('update_collection_extent') THEN + RAISE NOTICE 'updating collection extent for %', collection; + PERFORM run_or_queue(format($q$ + UPDATE collections + SET content = jsonb_set_lax( + content, + '{extent}'::text[], + collection_extent(%L, FALSE), + true, + 'use_json_null' + ) WHERE id=%L + ; + $q$, collection, collection)); + ELSE + RAISE NOTICE 'Not updating collection extent for %', collection; + END IF; + +END; +$function$ +; + CREATE OR REPLACE FUNCTION pgstac.where_stats(inwhere text, updatestats boolean DEFAULT false, conf jsonb DEFAULT NULL::jsonb) RETURNS search_wheres LANGUAGE plpgsql diff --git a/src/pgstac/migrations/pgstac.unreleased.sql b/src/pgstac/migrations/pgstac.unreleased.sql index 6e3e1cfd..054cc19d 100644 --- a/src/pgstac/migrations/pgstac.unreleased.sql +++ b/src/pgstac/migrations/pgstac.unreleased.sql @@ -2426,7 +2426,7 @@ $$ LANGUAGE PLPGSQL STABLE STRICT; CREATE OR REPLACE VIEW partition_sys_meta AS SELECT - relid::text as partition, + (parse_ident(relid::text))[cardinality(parse_ident(relid::text))] as partition, replace(replace(CASE WHEN level = 1 THEN pg_get_expr(c.relpartbound, c.oid) ELSE pg_get_expr(parent.relpartbound, parent.oid) END, 'FOR VALUES IN (''',''), ''')','') AS collection, @@ -2444,28 +2444,28 @@ FROM WHERE isleaf ; -CREATE VIEW partitions_view AS +CREATE OR REPLACE VIEW partitions_view AS SELECT - relid::text as partition, + (parse_ident(relid::text))[cardinality(parse_ident(relid::text))] as partition, replace(replace(CASE WHEN level = 1 THEN pg_get_expr(c.relpartbound, c.oid) ELSE pg_get_expr(parent.relpartbound, parent.oid) END, 'FOR VALUES IN (''',''), ''')','') AS collection, level, c.reltuples, c.relhastriggers, - COALESCE(constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity', 'infinity','[]')) as partition_dtrange, - COALESCE((dt_constraint(edt.oid)).dt, constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity', 'infinity','[]')) as constraint_dtrange, - COALESCE((dt_constraint(edt.oid)).edt, tstzrange('-infinity', 'infinity','[]')) as constraint_edtrange, + COALESCE(pgstac.constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity', 'infinity','[]')) as partition_dtrange, + COALESCE((pgstac.dt_constraint(edt.oid)).dt, pgstac.constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity', 'infinity','[]')) as constraint_dtrange, + COALESCE((pgstac.dt_constraint(edt.oid)).edt, tstzrange('-infinity', 'infinity','[]')) as constraint_edtrange, dtrange, edtrange, spatial, last_updated FROM - pg_partition_tree('items') + pg_partition_tree('pgstac.items') JOIN pg_class c ON (relid::regclass = c.oid) JOIN pg_class parent ON (parentrelid::regclass = parent.oid AND isleaf) LEFT JOIN pg_constraint edt ON (conrelid=c.oid AND contype='c') - LEFT JOIN partition_stats ON (relid::text=partition) + LEFT JOIN pgstac.partition_stats ON ((parse_ident(relid::text))[cardinality(parse_ident(relid::text))]=partition) WHERE isleaf ; @@ -2512,6 +2512,7 @@ BEGIN _partition ) INTO dtrange, edtrange; extent := st_estimatedextent('pgstac', _partition, 'geometry'); + RAISE DEBUG 'Estimated Extent: %', extent; INSERT INTO partition_stats (partition, dtrange, edtrange, spatial, last_updated) SELECT _partition, dtrange, edtrange, extent, now() ON CONFLICT (partition) DO @@ -2926,6 +2927,7 @@ BEGIN END IF; EXECUTE format('EXPLAIN (format json) SELECT 1 FROM items WHERE %s;', _where) INTO explain; + RAISE DEBUG 'EXPLAIN: %', explain; RETURN QUERY WITH t AS ( @@ -4121,6 +4123,7 @@ BEGIN FROM collection_search_rows(_search) c; number_returned := jsonb_array_length(out_records); + RAISE DEBUG 'nm: %, nr: %, l:%, o:%', number_matched, number_returned, _limit, _offset; diff --git a/src/pgstac/pgstac.sql b/src/pgstac/pgstac.sql index 17f72804..054cc19d 100644 --- a/src/pgstac/pgstac.sql +++ b/src/pgstac/pgstac.sql @@ -2426,7 +2426,7 @@ $$ LANGUAGE PLPGSQL STABLE STRICT; CREATE OR REPLACE VIEW partition_sys_meta AS SELECT - relid::text as partition, + (parse_ident(relid::text))[cardinality(parse_ident(relid::text))] as partition, replace(replace(CASE WHEN level = 1 THEN pg_get_expr(c.relpartbound, c.oid) ELSE pg_get_expr(parent.relpartbound, parent.oid) END, 'FOR VALUES IN (''',''), ''')','') AS collection, @@ -2444,28 +2444,28 @@ FROM WHERE isleaf ; -CREATE VIEW partitions_view AS +CREATE OR REPLACE VIEW partitions_view AS SELECT - relid::text as partition, + (parse_ident(relid::text))[cardinality(parse_ident(relid::text))] as partition, replace(replace(CASE WHEN level = 1 THEN pg_get_expr(c.relpartbound, c.oid) ELSE pg_get_expr(parent.relpartbound, parent.oid) END, 'FOR VALUES IN (''',''), ''')','') AS collection, level, c.reltuples, c.relhastriggers, - COALESCE(constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity', 'infinity','[]')) as partition_dtrange, - COALESCE((dt_constraint(edt.oid)).dt, constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity', 'infinity','[]')) as constraint_dtrange, - COALESCE((dt_constraint(edt.oid)).edt, tstzrange('-infinity', 'infinity','[]')) as constraint_edtrange, + COALESCE(pgstac.constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity', 'infinity','[]')) as partition_dtrange, + COALESCE((pgstac.dt_constraint(edt.oid)).dt, pgstac.constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity', 'infinity','[]')) as constraint_dtrange, + COALESCE((pgstac.dt_constraint(edt.oid)).edt, tstzrange('-infinity', 'infinity','[]')) as constraint_edtrange, dtrange, edtrange, spatial, last_updated FROM - pg_partition_tree('items') + pg_partition_tree('pgstac.items') JOIN pg_class c ON (relid::regclass = c.oid) JOIN pg_class parent ON (parentrelid::regclass = parent.oid AND isleaf) LEFT JOIN pg_constraint edt ON (conrelid=c.oid AND contype='c') - LEFT JOIN partition_stats ON (relid::text=partition) + LEFT JOIN pgstac.partition_stats ON ((parse_ident(relid::text))[cardinality(parse_ident(relid::text))]=partition) WHERE isleaf ; @@ -2512,6 +2512,7 @@ BEGIN _partition ) INTO dtrange, edtrange; extent := st_estimatedextent('pgstac', _partition, 'geometry'); + RAISE DEBUG 'Estimated Extent: %', extent; INSERT INTO partition_stats (partition, dtrange, edtrange, spatial, last_updated) SELECT _partition, dtrange, edtrange, extent, now() ON CONFLICT (partition) DO @@ -2926,6 +2927,7 @@ BEGIN END IF; EXECUTE format('EXPLAIN (format json) SELECT 1 FROM items WHERE %s;', _where) INTO explain; + RAISE DEBUG 'EXPLAIN: %', explain; RETURN QUERY WITH t AS ( @@ -4121,6 +4123,8 @@ BEGIN FROM collection_search_rows(_search) c; number_returned := jsonb_array_length(out_records); + RAISE DEBUG 'nm: %, nr: %, l:%, o:%', number_matched, number_returned, _limit, _offset; + IF _limit <= number_matched AND number_matched > 0 THEN --need to have paging links diff --git a/src/pgstac/sql/003b_partitions.sql b/src/pgstac/sql/003b_partitions.sql index 98b242a5..042f2742 100644 --- a/src/pgstac/sql/003b_partitions.sql +++ b/src/pgstac/sql/003b_partitions.sql @@ -46,7 +46,7 @@ $$ LANGUAGE PLPGSQL STABLE STRICT; CREATE OR REPLACE VIEW partition_sys_meta AS SELECT - relid::text as partition, + (parse_ident(relid::text))[cardinality(parse_ident(relid::text))] as partition, replace(replace(CASE WHEN level = 1 THEN pg_get_expr(c.relpartbound, c.oid) ELSE pg_get_expr(parent.relpartbound, parent.oid) END, 'FOR VALUES IN (''',''), ''')','') AS collection, @@ -64,28 +64,28 @@ FROM WHERE isleaf ; -CREATE VIEW partitions_view AS +CREATE OR REPLACE VIEW partitions_view AS SELECT - relid::text as partition, + (parse_ident(relid::text))[cardinality(parse_ident(relid::text))] as partition, replace(replace(CASE WHEN level = 1 THEN pg_get_expr(c.relpartbound, c.oid) ELSE pg_get_expr(parent.relpartbound, parent.oid) END, 'FOR VALUES IN (''',''), ''')','') AS collection, level, c.reltuples, c.relhastriggers, - COALESCE(constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity', 'infinity','[]')) as partition_dtrange, - COALESCE((dt_constraint(edt.oid)).dt, constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity', 'infinity','[]')) as constraint_dtrange, - COALESCE((dt_constraint(edt.oid)).edt, tstzrange('-infinity', 'infinity','[]')) as constraint_edtrange, + COALESCE(pgstac.constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity', 'infinity','[]')) as partition_dtrange, + COALESCE((pgstac.dt_constraint(edt.oid)).dt, pgstac.constraint_tstzrange(pg_get_expr(c.relpartbound, c.oid)), tstzrange('-infinity', 'infinity','[]')) as constraint_dtrange, + COALESCE((pgstac.dt_constraint(edt.oid)).edt, tstzrange('-infinity', 'infinity','[]')) as constraint_edtrange, dtrange, edtrange, spatial, last_updated FROM - pg_partition_tree('items') + pg_partition_tree('pgstac.items') JOIN pg_class c ON (relid::regclass = c.oid) JOIN pg_class parent ON (parentrelid::regclass = parent.oid AND isleaf) LEFT JOIN pg_constraint edt ON (conrelid=c.oid AND contype='c') - LEFT JOIN partition_stats ON (relid::text=partition) + LEFT JOIN pgstac.partition_stats ON ((parse_ident(relid::text))[cardinality(parse_ident(relid::text))]=partition) WHERE isleaf ; @@ -132,6 +132,7 @@ BEGIN _partition ) INTO dtrange, edtrange; extent := st_estimatedextent('pgstac', _partition, 'geometry'); + RAISE DEBUG 'Estimated Extent: %', extent; INSERT INTO partition_stats (partition, dtrange, edtrange, spatial, last_updated) SELECT _partition, dtrange, edtrange, extent, now() ON CONFLICT (partition) DO diff --git a/src/pgstac/sql/004_search.sql b/src/pgstac/sql/004_search.sql index d9e1c633..a447a723 100644 --- a/src/pgstac/sql/004_search.sql +++ b/src/pgstac/sql/004_search.sql @@ -12,6 +12,7 @@ BEGIN END IF; EXECUTE format('EXPLAIN (format json) SELECT 1 FROM items WHERE %s;', _where) INTO explain; + RAISE DEBUG 'EXPLAIN: %', explain; RETURN QUERY WITH t AS ( diff --git a/src/pgstac/sql/004a_collectionsearch.sql b/src/pgstac/sql/004a_collectionsearch.sql index 0c6c3b21..77fc8839 100644 --- a/src/pgstac/sql/004a_collectionsearch.sql +++ b/src/pgstac/sql/004a_collectionsearch.sql @@ -99,10 +99,11 @@ BEGIN FROM collection_search_rows(_search) c; number_returned := jsonb_array_length(out_records); + RAISE DEBUG 'nm: %, nr: %, l:%, o:%', number_matched, number_returned, _limit, _offset; - IF _limit <= number_matched AND number_matched = 0 THEN --need to have paging links + IF _limit <= number_matched AND number_matched > 0 THEN --need to have paging links nextoffset := least(_offset + _limit, number_matched - 1); prevoffset := greatest(_offset - _limit, 0); diff --git a/src/pgstac/tests/pgtap/001_core.sql b/src/pgstac/tests/pgtap/001_core.sql index d7da02df..ee8ecbbf 100644 --- a/src/pgstac/tests/pgtap/001_core.sql +++ b/src/pgstac/tests/pgtap/001_core.sql @@ -27,38 +27,6 @@ SELECT lives_ok( 'Search works with readonly mode set to off in readwrite mode.' ); -SET transaction_read_only TO 'on'; - -SELECT results_eq( - $$ SHOW transaction_read_only; $$, - $$ SELECT 'on'; $$, - 'Transaction set to read only' -); - -SELECT throws_ok( - $$ SELECT search('{}'); $$, - '25006' -); - -SET pgstac.readonly to 'true'; -SELECT results_eq( - $$ SELECT pgstac.readonly(); $$, - $$ SELECT TRUE; $$, - 'Readonly is set to true' -); - -SELECT lives_ok( - $$ SELECT search('{}'); $$, - 'Search works with readonly mode set to on in readonly mode.' -); - -SET pgstac.context TO 'on'; -SELECT lives_ok( - $$ SELECT search('{}'); $$, - 'Search works with readonly mode set to on in readonly mode and the context extension enabled.' -); -RESET transaction_read_only; -RESET pgstac.readonly; RESET pgstac.context; SELECT is_definer('update_partition_stats'); SELECT is_definer('partition_after_triggerfunc'); diff --git a/src/pgstac/tests/pgtap/9999_readonly.sql b/src/pgstac/tests/pgtap/9999_readonly.sql new file mode 100644 index 00000000..4c7c474f --- /dev/null +++ b/src/pgstac/tests/pgtap/9999_readonly.sql @@ -0,0 +1,31 @@ +SET transaction_read_only TO 'on'; + +SELECT results_eq( + $$ SHOW transaction_read_only; $$, + $$ SELECT 'on'; $$, + 'Transaction set to read only' +); + +SELECT throws_ok( + $$ SELECT search('{}'); $$, + '25006' +); + +SET pgstac.readonly to 'true'; +SELECT results_eq( + $$ SELECT pgstac.readonly(); $$, + $$ SELECT TRUE; $$, + 'Readonly is set to true' +); + +SELECT lives_ok( + $$ SELECT search('{}'); $$, + 'Search works with readonly mode set to on in readonly mode.' +); + +SET pgstac.context TO 'on'; +SELECT lives_ok( + $$ SELECT search('{}'); $$, + 'Search works with readonly mode set to on in readonly mode and the context extension enabled.' +); +RESET pgstac.readonly; diff --git a/src/pypgstac/pyproject.toml b/src/pypgstac/pyproject.toml index a800e719..4d5c8a06 100644 --- a/src/pypgstac/pyproject.toml +++ b/src/pypgstac/pyproject.toml @@ -23,7 +23,7 @@ dependencies = [ "cachetools==5.3.*", "fire==0.4.*", "hydraters==0.1.*", - "orjson>=3.5.2", + "orjson>=3.6.2", "plpygis==0.2.*", "pydantic>=1.7", "python-dateutil==2.8.*", @@ -40,12 +40,11 @@ test = [ "types-cachetools", ] dev = [ - "flake8==3.9.*", - "black>=21.7b0", - "mypy>=0.910", - "types-orjson==0.1.1", + "flake8==7.1.1", + "black>=24.10.0", + "mypy>=1.13.0", "types-setuptools", - "ruff==0.0.231", + "ruff==0.8.2", "pre-commit", ] psycopg = [ @@ -83,7 +82,7 @@ exclude_lines = [ "if TYPE_CHECKING:", ] -[tool.ruff] +[tool.ruff.lint] select = [ "E", # pycodestyle errors "W", # pycodestyle warnings @@ -112,7 +111,7 @@ ignore = [ "B905", ] -[tool.ruff.isort] +[tool.ruff.lint.isort] known-first-party = ["pypgstac"] [tool.mypy] diff --git a/src/pypgstac/src/pypgstac/hydration.py b/src/pypgstac/src/pypgstac/hydration.py index 3044c2c6..30798489 100644 --- a/src/pypgstac/src/pypgstac/hydration.py +++ b/src/pypgstac/src/pypgstac/hydration.py @@ -20,7 +20,7 @@ def hydrate_py(base_item: Dict[str, Any], item: Dict[str, Any]) -> Dict[str, Any # This will prevent the base item values from being mutated, e.g. by # filtering out fields in `filter_fields`. def merge(b: Dict[str, Any], i: Dict[str, Any]) -> None: - for key in b: + for key, _ in b.items(): if key in i: if isinstance(b[key], dict) and isinstance(i.get(key), dict): # Recurse on dicts to merge values diff --git a/src/pypgstac/src/pypgstac/load.py b/src/pypgstac/src/pypgstac/load.py index 2e9bcc6a..2cb3c89d 100644 --- a/src/pypgstac/src/pypgstac/load.py +++ b/src/pypgstac/src/pypgstac/load.py @@ -1,4 +1,5 @@ """Utilities to bulk load data into pgstac from json/ndjson.""" + import contextlib import itertools import logging @@ -83,7 +84,10 @@ class Methods(str, Enum): @contextlib.contextmanager def open_std( - filename: str, mode: str = "r", *args: Any, **kwargs: Any, + filename: str, + mode: str = "r", + *args: Any, + **kwargs: Any, ) -> Generator[Any, None, None]: """Open files and i/o streams transparently.""" fh: Union[TextIO, BinaryIO] @@ -305,7 +309,6 @@ def load_partition( logger.debug(f"Partition {partition.name} does not require an update.") with conn.transaction(): - t = time.perf_counter() if insert_mode in ( None, @@ -432,7 +435,6 @@ def load_partition( ; """, ).format(sql.Identifier(partition.name)), - ) logger.debug(cur.statusmessage) logger.debug(f"Rows affected: {cur.rowcount}") @@ -442,7 +444,7 @@ def load_partition( f"You entered {insert_mode}.", ) logger.debug("Updating Partition Stats") - cur.execute("SELECT update_partition_stats_q(%s);",(partition.name,)) + cur.execute("SELECT update_partition_stats_q(%s);", (partition.name,)) logger.debug(cur.statusmessage) logger.debug(f"Rows affected: {cur.rowcount}") logger.debug( @@ -492,14 +494,10 @@ def _partition_update(self, item: Dict[str, Any]) -> str: ), ) if db_rows: - datetime_range_min: Optional[datetime] = db_rows[0][0] or datetime.min - datetime_range_max: Optional[datetime] = db_rows[0][1] or datetime.max - end_datetime_range_min: Optional[datetime] = ( - db_rows[0][2] or datetime.min - ) - end_datetime_range_max: Optional[datetime] = ( - db_rows[0][3] or datetime.max - ) + datetime_range_min: datetime = db_rows[0][0] or datetime.min + datetime_range_max: datetime = db_rows[0][1] or datetime.max + end_datetime_range_min: datetime = db_rows[0][2] or datetime.min + end_datetime_range_max: datetime = db_rows[0][3] or datetime.max partition = Partition( name=partition_name, @@ -579,7 +577,8 @@ def read_dehydrated(self, file: Union[Path, str] = "stdin") -> Generator: yield item def read_hydrated( - self, file: Union[Path, str, Iterator[Any]] = "stdin", + self, + file: Union[Path, str, Iterator[Any]] = "stdin", ) -> Generator: for line in read_json(file): item = self.format_item(line) diff --git a/src/pypgstac/tests/hydration/test_base_item.py b/src/pypgstac/tests/hydration/test_base_item.py index 8c360fb1..022028a5 100644 --- a/src/pypgstac/tests/hydration/test_base_item.py +++ b/src/pypgstac/tests/hydration/test_base_item.py @@ -22,10 +22,11 @@ def test_landsat_c2_l1(loader: Loader) -> None: base_item = cast( Dict[str, Any], loader.db.query_one( - "SELECT base_item FROM collections WHERE id=%s;", (collection["id"],), + "SELECT base_item FROM collections WHERE id=%s;", + (collection["id"],), ), ) - assert type(base_item) == dict + assert type(base_item) is dict assert base_item["collection"] == collection["id"] assert base_item["assets"] == collection["item_assets"] diff --git a/src/pypgstac/tests/hydration/test_dehydrate.py b/src/pypgstac/tests/hydration/test_dehydrate.py index fe837f0b..a41efa3f 100644 --- a/src/pypgstac/tests/hydration/test_dehydrate.py +++ b/src/pypgstac/tests/hydration/test_dehydrate.py @@ -23,7 +23,9 @@ class TestDehydrate: def dehydrate( - self, base_item: Dict[str, Any], item: Dict[str, Any], + self, + base_item: Dict[str, Any], + item: Dict[str, Any], ) -> Dict[str, Any]: return hydration.dehydrate(base_item, item) @@ -42,11 +44,12 @@ def test_landsat_c2_l1(self, loader: Loader) -> None: base_item = cast( Dict[str, Any], loader.db.query_one( - "SELECT base_item FROM collections WHERE id=%s;", (collection["id"],), + "SELECT base_item FROM collections WHERE id=%s;", + (collection["id"],), ), ) - assert type(base_item) == dict + assert type(base_item) is dict dehydrated = self.dehydrate(base_item, item) diff --git a/src/pypgstac/tests/hydration/test_hydrate.py b/src/pypgstac/tests/hydration/test_hydrate.py index d6928353..efa49567 100644 --- a/src/pypgstac/tests/hydration/test_hydrate.py +++ b/src/pypgstac/tests/hydration/test_hydrate.py @@ -68,7 +68,7 @@ def test_landsat_c2_l1(self, loader: Loader) -> None: ), ) - assert type(base_item) == dict + assert type(base_item) is dict hydrated = self.hydrate(base_item, dehydrated) assert hydrated == raw_item From d4b619b5ff2ba6c49debe5f4561c9aa07380b127 Mon Sep 17 00:00:00 2001 From: David W Bitner Date: Thu, 5 Dec 2024 17:02:34 -0600 Subject: [PATCH 2/4] update queryables to more smartly handle properties.datetime --- .../migrations/pgstac.0.9.1-unreleased.sql | 59 +++++++++++++++++++ src/pgstac/migrations/pgstac.unreleased.sql | 5 ++ src/pgstac/pgstac.sql | 5 ++ src/pgstac/sql/002a_queryables.sql | 5 ++ 4 files changed, 74 insertions(+) diff --git a/src/pgstac/migrations/pgstac.0.9.1-unreleased.sql b/src/pgstac/migrations/pgstac.0.9.1-unreleased.sql index 4f34048f..37e0f8c6 100644 --- a/src/pgstac/migrations/pgstac.0.9.1-unreleased.sql +++ b/src/pgstac/migrations/pgstac.0.9.1-unreleased.sql @@ -431,6 +431,65 @@ create or replace view "pgstac"."partitions_view" as SELECT (parse_ident((pg_pa WHERE pg_partition_tree.isleaf; +CREATE OR REPLACE FUNCTION pgstac.queryable(dotpath text, OUT path text, OUT expression text, OUT wrapper text, OUT nulled_wrapper text) + RETURNS record + LANGUAGE plpgsql + STABLE STRICT +AS $function$ +DECLARE + q RECORD; + path_elements text[]; +BEGIN + dotpath := replace(dotpath, 'properties.', ''); + IF dotpath = 'start_datetime' THEN + dotpath := 'datetime'; + END IF; + IF dotpath IN ('id', 'geometry', 'datetime', 'end_datetime', 'collection') THEN + path := dotpath; + expression := dotpath; + wrapper := NULL; + RETURN; + END IF; + + SELECT * INTO q FROM queryables + WHERE + name=dotpath + OR name = 'properties.' || dotpath + OR name = replace(dotpath, 'properties.', '') + ; + IF q.property_wrapper IS NULL THEN + IF q.definition->>'type' = 'number' THEN + wrapper := 'to_float'; + nulled_wrapper := wrapper; + ELSIF q.definition->>'format' = 'date-time' THEN + wrapper := 'to_tstz'; + nulled_wrapper := wrapper; + ELSE + nulled_wrapper := NULL; + wrapper := 'to_text'; + END IF; + ELSE + wrapper := q.property_wrapper; + nulled_wrapper := wrapper; + END IF; + IF q.property_path IS NOT NULL THEN + path := q.property_path; + ELSE + path_elements := string_to_array(dotpath, '.'); + IF path_elements[1] IN ('links', 'assets', 'stac_version', 'stac_extensions') THEN + path := format('content->%s', array_to_path(path_elements)); + ELSIF path_elements[1] = 'properties' THEN + path := format('content->%s', array_to_path(path_elements)); + ELSE + path := format($F$content->'properties'->%s$F$, array_to_path(path_elements)); + END IF; + END IF; + expression := format('%I(%s)', wrapper, path); + RETURN; +END; +$function$ +; + CREATE OR REPLACE FUNCTION pgstac.stac_search_to_where(j jsonb) RETURNS text LANGUAGE plpgsql diff --git a/src/pgstac/migrations/pgstac.unreleased.sql b/src/pgstac/migrations/pgstac.unreleased.sql index 054cc19d..0858b646 100644 --- a/src/pgstac/migrations/pgstac.unreleased.sql +++ b/src/pgstac/migrations/pgstac.unreleased.sql @@ -1070,12 +1070,17 @@ DECLARE q RECORD; path_elements text[]; BEGIN + dotpath := replace(dotpath, 'properties.', ''); + IF dotpath = 'start_datetime' THEN + dotpath := 'datetime'; + END IF; IF dotpath IN ('id', 'geometry', 'datetime', 'end_datetime', 'collection') THEN path := dotpath; expression := dotpath; wrapper := NULL; RETURN; END IF; + SELECT * INTO q FROM queryables WHERE name=dotpath diff --git a/src/pgstac/pgstac.sql b/src/pgstac/pgstac.sql index 054cc19d..0858b646 100644 --- a/src/pgstac/pgstac.sql +++ b/src/pgstac/pgstac.sql @@ -1070,12 +1070,17 @@ DECLARE q RECORD; path_elements text[]; BEGIN + dotpath := replace(dotpath, 'properties.', ''); + IF dotpath = 'start_datetime' THEN + dotpath := 'datetime'; + END IF; IF dotpath IN ('id', 'geometry', 'datetime', 'end_datetime', 'collection') THEN path := dotpath; expression := dotpath; wrapper := NULL; RETURN; END IF; + SELECT * INTO q FROM queryables WHERE name=dotpath diff --git a/src/pgstac/sql/002a_queryables.sql b/src/pgstac/sql/002a_queryables.sql index a439b0a9..bbc92142 100644 --- a/src/pgstac/sql/002a_queryables.sql +++ b/src/pgstac/sql/002a_queryables.sql @@ -126,12 +126,17 @@ DECLARE q RECORD; path_elements text[]; BEGIN + dotpath := replace(dotpath, 'properties.', ''); + IF dotpath = 'start_datetime' THEN + dotpath := 'datetime'; + END IF; IF dotpath IN ('id', 'geometry', 'datetime', 'end_datetime', 'collection') THEN path := dotpath; expression := dotpath; wrapper := NULL; RETURN; END IF; + SELECT * INTO q FROM queryables WHERE name=dotpath From 8e3a4ecdcd3e64d064ad62bd46d08a689c26e160 Mon Sep 17 00:00:00 2001 From: David W Bitner Date: Thu, 5 Dec 2024 17:06:43 -0600 Subject: [PATCH 3/4] lint fix --- src/pypgstac/src/pypgstac/load.py | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/src/pypgstac/src/pypgstac/load.py b/src/pypgstac/src/pypgstac/load.py index fb638efc..1be86cb7 100644 --- a/src/pypgstac/src/pypgstac/load.py +++ b/src/pypgstac/src/pypgstac/load.py @@ -318,7 +318,9 @@ def load_partition( sql.SQL( """ COPY {} - (id, collection, datetime, end_datetime, geometry, content, private) + (id, collection, datetime, + end_datetime, geometry, + content, private) FROM stdin; """, ).format(sql.Identifier(partition.name)), @@ -354,7 +356,9 @@ def load_partition( with cur.copy( """ COPY items_ingest_temp - (id, collection, datetime, end_datetime, geometry, content, private) + (id, collection, datetime, + end_datetime, geometry, + content, private) FROM stdin; """, ) as copy: From 08264b80d0b1477914eb8696c12c9225c9d8873d Mon Sep 17 00:00:00 2001 From: David W Bitner Date: Thu, 5 Dec 2024 17:18:53 -0600 Subject: [PATCH 4/4] private field breaking pgtap tests --- src/pgstac/tests/testdata/items.ndjson | 200 +++++++++--------- .../tests/testdata/items_private.ndjson | 100 +++++++++ src/pypgstac/src/pypgstac/load.py | 4 +- src/pypgstac/tests/test_load.py | 26 ++- 4 files changed, 220 insertions(+), 110 deletions(-) create mode 100644 src/pgstac/tests/testdata/items_private.ndjson diff --git a/src/pgstac/tests/testdata/items.ndjson b/src/pgstac/tests/testdata/items.ndjson index d3e95ab7..9af6436c 100644 --- a/src/pgstac/tests/testdata/items.ndjson +++ b/src/pgstac/tests/testdata/items.ndjson @@ -1,100 +1,100 @@ -{"id": "pgstac-test-item-0003", private": {"created_by": "stac-task"}, "bbox": [-85.379245, 30.933949, -85.308201, 31.003555], "type": "Feature", "links": [], "assets": {"image": {"href": "https://naipeuwest.blob.core.windows.net/naip/v002/al/2011/al_100cm_2011/30085/m_3008506_nw_16_1_20110825.tif", "type": "image/tiff; application=geotiff; profile=cloud-optimized", "roles": ["data"], "title": "RGBIR COG tile", "eo:bands": [{"name": "Red", "common_name": "red"}, {"name": "Green", "common_name": "green"}, {"name": "Blue", "common_name": "blue"}, {"name": "NIR", "common_name": "nir", "description": "near-infrared"}]}, "metadata": {"href": "https://naipeuwest.blob.core.windows.net/naip/v002/al/2011/al_fgdc_2011/30085/m_3008506_nw_16_1_20110825.txt", "type": "text/plain", "roles": ["metadata"], "title": "FGDC Metdata"}, "thumbnail": {"href": "https://naipeuwest.blob.core.windows.net/naip/v002/al/2011/al_100cm_2011/30085/m_3008506_nw_16_1_20110825.200.jpg", "type": "image/jpeg", "roles": ["thumbnail"], "title": "Thumbnail"}}, "geometry": {"type": "Polygon", "coordinates": [[[-85.309412, 30.933949], [-85.308201, 31.002658], [-85.378084, 31.003555], [-85.379245, 30.934843], [-85.309412, 30.933949]]]}, "collection": "pgstac-test-collection", "properties": {"gsd": 1, "datetime": "2011-08-25T00:00:00Z", "naip:year": "2011", "proj:bbox": [654842, 3423507, 661516, 3431125], "proj:epsg": 26916, "providers": [{"url": "https://www.fsa.usda.gov/programs-and-services/aerial-photography/imagery-programs/naip-imagery/", "name": "USDA Farm Service Agency", "roles": ["producer", "licensor"]}], "naip:state": "al", "proj:shape": [7618, 6674], "eo:cloud_cover": 28, "proj:transform": [1, 0, 654842, 0, -1, 3431125, 0, 0, 1]}, "stac_version": "1.0.0-beta.2", "stac_extensions": ["eo", "projection"]} -{"id": "pgstac-test-item-0004", private": {"created_by": "stac-task"}, "bbox": [-87.190775, 30.934712, -87.121772, 31.002794], "type": "Feature", "links": [], "assets": {"image": {"href": "https://naipeuwest.blob.core.windows.net/naip/v002/al/2011/al_100cm_2011/30087/m_3008707_ne_16_1_20110824.tif", "type": "image/tiff; 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application=geotiff; profile=cloud-optimized", "roles": ["data"], "title": "RGBIR COG tile", "eo:bands": [{"name": "Red", "common_name": "red"}, {"name": "Green", "common_name": "green"}, {"name": "Blue", "common_name": "blue"}, {"name": "NIR", "common_name": "nir", "description": "near-infrared"}]}, "metadata": {"href": "https://naipeuwest.blob.core.windows.net/naip/v002/al/2011/al_fgdc_2011/30087/m_3008726_se_16_1_20110731.txt", "type": "text/plain", "roles": ["metadata"], "title": "FGDC Metdata"}, "thumbnail": {"href": "https://naipeuwest.blob.core.windows.net/naip/v002/al/2011/al_100cm_2011/30087/m_3008726_se_16_1_20110731.200.jpg", "type": "image/jpeg", "roles": ["thumbnail"], "title": "Thumbnail"}}, "geometry": {"type": "Polygon", "coordinates": [[[-87.74637, 30.497308], [-87.746892, 30.565604], [-87.816179, 30.565188], [-87.815608, 30.496894], [-87.74637, 30.497308]]]}, "collection": "pgstac-test-collection", "properties": {"gsd": 1, "datetime": "2011-07-31T00:00:00Z", "naip:year": 2013, "proj:bbox": [421730, 3374130, 428375, 3381699], "proj:epsg": 26916, "providers": [{"url": "https://www.fsa.usda.gov/programs-and-services/aerial-photography/imagery-programs/naip-imagery/", "name": "USDA Farm Service Agency", "roles": ["producer", "licensor"]}], "naip:state": "zz", "proj:shape": [7569, 6645], "eo:cloud_cover": 50, "proj:transform": [1, 0, 421730, 0, -1, 3381699, 0, 0, 1]}, "stac_version": "1.0.0-beta.2", "stac_extensions": ["eo", "projection"]} diff --git a/src/pypgstac/src/pypgstac/load.py b/src/pypgstac/src/pypgstac/load.py index 1be86cb7..76d97e7e 100644 --- a/src/pypgstac/src/pypgstac/load.py +++ b/src/pypgstac/src/pypgstac/load.py @@ -335,7 +335,7 @@ def load_partition( item["end_datetime"], item["geometry"], item["content"], - item["private"], + item.get("private", None), ), ) logger.debug(cur.statusmessage) @@ -372,7 +372,7 @@ def load_partition( item["end_datetime"], item["geometry"], item["content"], - item["private"], + item.get("private", None), ), ) logger.debug(cur.statusmessage) diff --git a/src/pypgstac/tests/test_load.py b/src/pypgstac/tests/test_load.py index 918a33ce..564ab8f6 100644 --- a/src/pypgstac/tests/test_load.py +++ b/src/pypgstac/tests/test_load.py @@ -1,4 +1,5 @@ """Tests for pypgstac.""" + import json import re from pathlib import Path @@ -14,7 +15,7 @@ TEST_DATA_DIR = HERE.parent.parent / "pgstac" / "tests" / "testdata" TEST_COLLECTIONS_JSON = TEST_DATA_DIR / "collections.json" TEST_COLLECTIONS = TEST_DATA_DIR / "collections.ndjson" -TEST_ITEMS = TEST_DATA_DIR / "items.ndjson" +TEST_ITEMS = TEST_DATA_DIR / "items_private.ndjson" TEST_DEHYDRATED_ITEMS = TEST_DATA_DIR / "items.pgcopy" S1_GRD_COLLECTION = ( @@ -32,7 +33,7 @@ def version_increment(source_version: str) -> str: - source_version = re.sub("-dev$","",source_version) + source_version = re.sub("-dev$", "", source_version) version = V(source_version) return ".".join( map( @@ -267,11 +268,15 @@ def test_load_items_dehydrated_ignore_succeeds(loader: Loader) -> None: ) loader.load_items( - str(TEST_DEHYDRATED_ITEMS), insert_mode=Methods.insert, dehydrated=True, + str(TEST_DEHYDRATED_ITEMS), + insert_mode=Methods.insert, + dehydrated=True, ) loader.load_items( - str(TEST_DEHYDRATED_ITEMS), insert_mode=Methods.ignore, dehydrated=True, + str(TEST_DEHYDRATED_ITEMS), + insert_mode=Methods.ignore, + dehydrated=True, ) @@ -357,14 +362,17 @@ def test_load_dehydrated(loader: Loader) -> None: dehydrated_items = HERE / "data-files" / "load" / "dehydrated.txt" loader.load_items( - str(dehydrated_items), insert_mode=Methods.insert, dehydrated=True, + str(dehydrated_items), + insert_mode=Methods.insert, + dehydrated=True, ) def test_load_collections_incompatible_version(loader: Loader) -> None: """Test pypgstac collections loader raises an exception for incompatible version.""" with mock.patch( - "pypgstac.db.PgstacDB.version", new_callable=mock.PropertyMock, + "pypgstac.db.PgstacDB.version", + new_callable=mock.PropertyMock, ) as mock_version: mock_version.return_value = "dummy" with pytest.raises(ValueError): @@ -381,7 +389,8 @@ def test_load_items_incompatible_version(loader: Loader) -> None: insert_mode=Methods.insert, ) with mock.patch( - "pypgstac.db.PgstacDB.version", new_callable=mock.PropertyMock, + "pypgstac.db.PgstacDB.version", + new_callable=mock.PropertyMock, ) as mock_version: mock_version.return_value = "dummy" with pytest.raises(ValueError): @@ -394,7 +403,8 @@ def test_load_items_incompatible_version(loader: Loader) -> None: def test_load_compatible_major_minor_version(loader: Loader) -> None: """Test pypgstac loader doesn't raise an exception.""" with mock.patch( - "pypgstac.load.__version__", version_increment(__version__), + "pypgstac.load.__version__", + version_increment(__version__), ) as mock_version: loader.load_collections( str(TEST_COLLECTIONS_JSON),