diff --git a/revdep/README.md b/revdep/README.md
index eca30b124..007a3a7d3 100644
--- a/revdep/README.md
+++ b/revdep/README.md
@@ -2,355 +2,71 @@
|field |value |
|:--------|:-------------------------------------------------------------------------------------------------------------------------|
-|version |R version 4.3.0 (2023-04-21) |
-|os |Rocky Linux 8.7 (Green Obsidian) |
+|version |R version 4.3.2 (2023-10-31) |
+|os |Rocky Linux 8.8 (Green Obsidian) |
|system |x86_64, linux-gnu |
|ui |X11 |
|language |(EN) |
|collate |en_AU.UTF-8 |
|ctype |en_AU.UTF-8 |
|tz |:/etc/localtime |
-|date |2023-05-27 |
+|date |2023-12-17 |
|pandoc |2.19.2 @ /apps/z_install_tree/linux-rocky8-ivybridge/gcc-12.2.0/pandoc-2.19.2-vrhsk7cphmufa3sa5pjklo336yruubte/bin/pandoc |
# Dependencies
-|package |old |new |Δ |
-|:--------------|:-----|:---------|:--|
-|ergm |4.4.0 |4.5-7229 |* |
-|knitr |NA |1.43 |* |
-|statnet.common |NA |4.9.0-423 |* |
+|package |old |new |Δ |
+|:-------|:-----|:--------|:--|
+|ergm |4.5.0 |4.6-7282 |* |
+|cli |NA |3.6.2 |* |
+|stringi |NA |1.8.3 |* |
+|yaml |NA |2.3.8 |* |
# Revdeps
-## Failed to check (2)
+## Failed to check (1)
-|package |version |error |warning |note |
-|:--------------|:-------|:-----|:-------|:----|
-|[eoffice](failures.md#eoffice)|0.2.2 |1 | | |
-|[SWMPrExtension](failures.md#swmprextension)|2.2.4.2 |1 | | |
+|package |version |error |warning |note |
+|:-------|:-------|:-----|:-------|:----|
+|[lolog](failures.md#lolog)|1.3.1 |1 | |1 |
-## New problems (2)
+## All (35)
-|package |version |error |warning |note |
-|:--------|:-------|:------|:-------|:----|
-|[EpiModel](problems.md#epimodel)|2.3.2 |__+3__ | | |
-|[tergm](problems.md#tergm)|4.1.1 |__+1__ | | |
-
-## All (312)
-
-|package |version |error |warning |note |
-|:-------------------|:---------|:------|:-------|:----|
-|agridat |1.21 | | | |
-|AgroReg |1.2.9 | | | |
-|AICcPermanova |0.0.2 | | | |
-|allestimates |0.2.3 | | | |
-|[Amelia](problems.md#amelia)|1.8.1 | | |2 |
-|[amt](problems.md#amt)|0.2.1.0 |1 | | |
-|[AovBay](problems.md#aovbay)|0.1.0 | | |3 |
-|apaTables |2.0.8 | | | |
-|[archetyper](problems.md#archetyper)|0.1.0 | | |2 |
-|ardl.nardl |1.2.3 | | | |
-|arsenal |3.6.3 | | | |
-|[autocogs](problems.md#autocogs)|0.1.4 | | |1 |
-|autoimage |2.2.3 | | | |
-|autoReg |0.3.2 | | | |
-|autostats |0.4.0 | | | |
-|[BasketballAnalyzeR](problems.md#basketballanalyzer)|0.5.0 | | |1 |
-|batchtma |0.1.6 | | | |
-|[BayesPostEst](problems.md#bayespostest)|0.3.2 |1 | | |
-|Bergm |5.0.5 | | | |
-|bizicount |1.3.2 | | | |
-|[Blaunet](problems.md#blaunet)|2.2.1 | | |1 |
-|breathtestcore |0.8.6 | | | |
-|broom |1.0.4 | | | |
-|broom.helpers |1.13.0 | | | |
-|[broom.mixed](problems.md#broommixed)|0.2.9.4 | | |1 |
-|bruceR |0.8.10 | | | |
-|btergm |1.10.10 | | | |
-|bucky |1.0.7 | | | |
-|bumbl |1.0.3 | | | |
-|[card](problems.md#card)|0.1.0 | | |2 |
-|[catfun](problems.md#catfun)|0.1.4 | | |2 |
-|cdom |0.1.0 | | | |
-|chest |0.3.7 | | | |
-|codaredistlm |0.1.0 | | | |
-|collpcm |1.2 | | | |
-|conjoint |1.41 | | | |
-|[convergEU](problems.md#convergeu)|0.5.4 | | |1 |
-|CR2 |0.2.1 | | | |
-|crossmap |0.4.0 | | | |
-|[csdata](problems.md#csdata)|2023.5.22 | | |1 |
-|currr |0.1.2 | | | |
-|dcurves |0.4.0 | | | |
-|DeclareDesign |1.0.2 | | | |
-|[describedata](problems.md#describedata)|0.1.0 | | |1 |
-|did2s |1.0.2 | | | |
-|[didimputation](problems.md#didimputation)|0.3.0 | | |1 |
-|disk.frame |0.8.2 | | | |
-|[disto](problems.md#disto)|0.2.0 | | |2 |
-|[dnr](problems.md#dnr)|0.3.5 | | |2 |
-|doBy |4.6.16 | | | |
-|[dotwhisker](problems.md#dotwhisker)|0.7.4 | | |1 |
-|[dplyr](problems.md#dplyr)|1.1.2 | | |3 |
-|[dragon](problems.md#dragon)|1.2.1 | | |2 |
-|DynNom |5.0.2 | | | |
-|echarts4r |0.4.4 | | | |
-|edwards97 |0.1.1 | | | |
-|eechidna |1.4.1 | | | |
-|[eoffice](failures.md#eoffice)|0.2.2 |1 | | |
-|epimdr |0.6-5 | | | |
-|epimdr2 |1.0-9 | | | |
-|[EpiModel](problems.md#epimodel)|2.3.2 |__+3__ | | |
-|ergm.count |4.1.1 | | | |
-|ergm.ego |1.0.1 | | | |
-|ergm.multi |0.1.2 | | | |
-|ergm.rank |4.1.0 | | | |
-|ergMargins |0.1.3.1 | | | |
-|[ERSA](problems.md#ersa)|0.1.3 | | |1 |
-|[estimatr](problems.md#estimatr)|1.0.0 | | |2 |
-|ethnobotanyR |0.1.9 | | | |
-|[eurostat](problems.md#eurostat)|3.8.2 | | |1 |
-|ExPanDaR |0.5.3 | | | |
-|ExpDes |1.2.2 | | | |
-|[ExpDes.pt](problems.md#expdespt)|1.2.2 | | |1 |
-|explore |1.0.2 | | | |
-|[export](problems.md#export)|0.3.0 |1 | | |
-|[eyetrackingR](problems.md#eyetrackingr)|0.2.0 | | |2 |
-|faux |1.2.1 | | | |
-|feisr |1.3.0 | | | |
-|fergm |1.1.4 | | | |
-|[finalfit](problems.md#finalfit)|1.0.6 | | |2 |
-|[fivethirtyeight](problems.md#fivethirtyeight)|0.6.2 | | |4 |
-|[flextable](problems.md#flextable)|0.9.1 | | |1 |
-|forestmangr |0.9.5 | | | |
-|[forestmodel](problems.md#forestmodel)|0.6.2 | | |1 |
-|funneljoin |0.2.0 | | | |
-|[fwildclusterboot](problems.md#fwildclusterboot)|0.13.0 | | |1 |
-|geepack |1.3.9 | | | |
-|germinationmetrics |0.1.7 | | | |
-|getmstatistic |0.2.2 | | | |
-|GGally |2.1.2 | | | |
-|ggasym |0.1.6 | | | |
-|ggdist |3.3.0 | | | |
-|ggFishPlots |0.2.2 | | | |
-|[ggformula](problems.md#ggformula)|0.10.4 | | |1 |
-|gglm |1.0.2 | | | |
-|ggpmisc |0.5.2 | | | |
-|ggstats |0.3.0 | | | |
-|ggsurvfit |0.3.0 | | | |
-|[ghypernet](problems.md#ghypernet)|1.1.0 | | |2 |
-|[glmmfields](problems.md#glmmfields)|0.1.7 | | |2 |
-|[glmmTMB](problems.md#glmmtmb)|1.1.7 | | |1 |
-|[goldfish](problems.md#goldfish)|1.6.4 | | |2 |
-|gompertztrunc |0.1.1 | | | |
-|gRain |1.3.13 | | | |
-|gravity |1.1 | | | |
-|Greg |2.0.1 | | | |
-|[greybox](problems.md#greybox)|1.0.8 | | |1 |
-|groupdata2 |2.0.2 | | | |
-|gtreg |0.2.0 | | | |
-|gtsummary |1.7.1 | | | |
-|[gWQS](problems.md#gwqs)|3.0.4 | | |1 |
-|[hbal](problems.md#hbal)|1.2.8 | | |2 |
-|HDStIM |0.1.0 | | | |
-|[healthyR](problems.md#healthyr)|0.2.1 | | |1 |
-|healthyR.ai |0.0.13 | | | |
-|[heplots](problems.md#heplots)|1.4-2 | | |1 |
-|hergm |4.1-10 | | | |
-|[highcharter](problems.md#highcharter)|0.9.4 | | |2 |
-|[huxtable](problems.md#huxtable)|5.5.2 | | |1 |
-|[IceSat2R](problems.md#icesat2r)|1.0.4 | | |1 |
-|imputeREE |0.0.1 | | | |
-|[industRial](problems.md#industrial)|0.1.0 | | |1 |
-|infer |1.0.4 | | | |
-|insane |1.0.2 | | | |
-|insight |0.19.2 | | | |
-|[interactions](problems.md#interactions)|1.1.5 | | |1 |
-|iNZightRegression |1.3.3 | | | |
-|ITNr |0.7.0 | | | |
-|itraxR |1.8 | | | |
-|[ivx](problems.md#ivx)|1.1.0 | | |1 |
-|jlsm |0.1.0 | | | |
-|JSmediation |0.2.1 | | | |
-|jtools |2.2.1 | | | |
-|kayadata |1.2.0 | | | |
-|KinMixLite |2.1.0 | | | |
-|KMunicate |0.2.3 | | | |
-|[konfound](problems.md#konfound)|0.4.0 | | |1 |
-|lactater |0.1.4 | | | |
-|[latentnet](problems.md#latentnet)|2.10.6 | | |4 |
-|[lcsm](problems.md#lcsm)|0.3.2 | | |1 |
-|[LDAShiny](problems.md#ldashiny)|0.9.3 | | |1 |
-|[lin.eval](problems.md#lineval)|0.1.2 | | |1 |
-|logitr |1.1.0 | | | |
-|[lolog](problems.md#lolog)|1.3 |-1 | |1 |
-|[lspline](problems.md#lspline)|1.0-0 | | |1 |
-|[lucid](problems.md#lucid)|1.8 |1 | |1 |
-|lvm4net |0.3 | | | |
-|macleish |0.3.9 | | | |
-|[MagmaClustR](problems.md#magmaclustr)|1.1.2 | | |1 |
-|[MapeBay](problems.md#mapebay)|0.1.0 | | |3 |
-|marginaleffects |0.12.0 | | | |
-|margins |0.3.26 | | | |
-|[mason](problems.md#mason)|0.3.0 | | |1 |
-|MEclustnet |1.2.2 | | | |
-|merTools |0.6.1 | | | |
-|[metabolomicsR](problems.md#metabolomicsr)|1.0.0 | | |1 |
-|[mhurdle](problems.md#mhurdle)|1.3-0 | | |1 |
-|[mice](problems.md#mice)|3.15.0 |-1 | |2 |
-|[microbial](problems.md#microbial)|0.0.20 | | |1 |
-|midasr |0.8 | | | |
-|mixl |1.3.3 | | | |
-|mixpoissonreg |1.0.0 | | | |
-|mlergm |0.8 | | | |
-|MLMusingR |0.3.0 | | | |
-|mlogit |1.1-1 | | | |
-|modelr |0.1.11 | | | |
-|modelsummary |1.4.1 | | | |
-|[moderndive](problems.md#moderndive)|0.5.5 | | |1 |
-|momentfit |0.3 | | | |
-|mosaic |1.8.4.2 | | | |
-|motifr |1.0.0 | | | |
-|MplusAutomation |1.1.0 | | | |
-|[MSEtool](problems.md#msetool)|3.6.2 | | |1 |
-|mudfold |1.1.21 | | | |
-|Multiaovbay |0.1.0 | | | |
-|[multifear](problems.md#multifear)|0.1.2 | | |1 |
-|multifunc |0.9.4 | | | |
-|multinets |0.2.2 | | | |
-|[multiverse](problems.md#multiverse)|0.6.1 | | |1 |
-|mverse |0.1.0 | | | |
-|ndtv |0.13.3 | | | |
-|Neighboot |1.0.1 | | | |
-|nemBM |1.00.01 | | | |
-|nestedLogit |0.2.1 | | | |
-|nestedmodels |1.0.4 | | | |
-|NetCoupler |0.1.0 | | | |
-|[NetMix](problems.md#netmix)|0.2.0.1 | | |1 |
-|network |1.18.1 | | | |
-|[networkDynamic](problems.md#networkdynamic)|0.11.3 |1 | | |
-|NetworkExtinction |1.0.3 | | | |
-|networkLite |1.0.5 | | | |
-|[nlmixr2est](problems.md#nlmixr2est)|2.1.6 |1 | | |
-|nls.multstart |1.2.0 | | | |
-|[nlshelper](problems.md#nlshelper)|0.2 | | |1 |
-|nrba |0.1.0 | | | |
-|[oceanic](problems.md#oceanic)|0.1.6 | | |1 |
-|oesr |0.1.0 | | | |
-|OlinkAnalyze |3.4.1 | | | |
-|omicwas |0.8.0 | | | |
-|omu |1.1.0 | | | |
-|[openintro](problems.md#openintro)|2.4.0 | | |2 |
-|owidR |1.4.1 | | | |
-|[packDAMipd](problems.md#packdamipd)|0.2.2 | | |1 |
-|panelr |0.7.7 | | | |
-|panelvar |0.5.5 | | | |
-|papaja |0.1.1 | | | |
-|parameters |0.21.0 | | | |
-|pbkrtest |0.5.2 | | | |
-|pder |1.0-2 | | | |
-|PHEindicatormethods |2.0.1 | | | |
-|[photosynthesis](problems.md#photosynthesis)|2.1.3 | | |2 |
-|[pixiedust](problems.md#pixiedust)|0.9.1 | | |2 |
-|[pkggraph](problems.md#pkggraph)|0.2.3 | | |1 |
-|[plm](problems.md#plm)|2.6-3 | | |1 |
-|[plotly](problems.md#plotly)|4.10.1 | | |1 |
-|POV |0.1.4 | | | |
-|prettyglm |1.0.0 | | | |
-|psychReport |3.0.2 | | | |
-|[pubh](problems.md#pubh)|1.2.7 | | |1 |
-|PVplr |0.1.2 | | | |
-|pwr2ppl |0.5.0 | | | |
-|qcpm |0.2 | | | |
-|qgcomp |2.10.1 | | | |
-|[qPCRtools](problems.md#qpcrtools)|0.2.1 | | |1 |
-|qte |1.3.1 | | | |
-|R2MLwiN |0.8-8 | | | |
-|[radiant.data](problems.md#radiantdata)|1.5.6 | | |1 |
-|radiant.model |1.5.0 | | | |
-|[RBesT](problems.md#rbest)|1.6-6 | | |2 |
-|RCT |1.1.2 | | | |
-|RDS |0.9-6 | | | |
-|[rdss](problems.md#rdss)|1.0.4 | | |2 |
-|reappraised |0.1.0 | | | |
-|regport |0.3.0 | | | |
-|regr.easy |1.0.2 | | | |
-|rem |1.3.1 | | | |
-|rempsyc |0.1.2 | | | |
-|[rfars](problems.md#rfars)|0.3.0 | | |1 |
-|RKorAPClient |0.7.6 | | | |
-|robomit |1.0.6 | | | |
-|rsample |1.1.1 | | | |
-|rstatix |0.7.2 | | | |
-|[sand](problems.md#sand)|2.0.0 | | |2 |
-|sclr |0.3.1 | | | |
-|scpoisson |0.0.1 | | | |
-|sdcLog |0.5.0 | | | |
-|sensemakr |0.1.4 | | | |
-|SetMethods |4.0 | | | |
-|sfdep |0.2.3 | | | |
-|[SherlockHolmes](problems.md#sherlockholmes)|1.0.1 | | |2 |
-|simglm |0.8.9 | | | |
-|simhelpers |0.1.2 | | | |
-|SimplifyStats |2.0.4 | | | |
-|simpr |0.2.6 | | | |
-|simTool |1.1.7 |-1 | | |
-|[simts](problems.md#simts)|0.2.1 | | |2 |
-|sjstats |0.18.2 | | | |
-|[skedastic](problems.md#skedastic)|2.0.1 | | |1 |
-|sna |2.7-1 | | | |
-|sovereign |1.2.1 | | | |
-|[sparklyr](problems.md#sparklyr)|1.8.1 | | |1 |
-|specr |1.0.0 | | | |
-|[spqdep](problems.md#spqdep)|0.1.2 | | |2 |
-|sspse |1.0.3 | | | |
-|[stabiliser](problems.md#stabiliser)|1.0.6 | | |1 |
-|[stargazer](problems.md#stargazer)|5.2.3 | | |1 |
-|[statnet](problems.md#statnet)|2019.6 | | |2 |
-|[statnet.common](problems.md#statnetcommon)|4.9.0 | | |1 |
-|[statnetWeb](problems.md#statnetweb)|0.5.6 | | |1 |
-|statsr |0.3.0 | | | |
-|[StroupGLMM](problems.md#stroupglmm)|0.1.0 | | |1 |
-|[survminer](problems.md#survminer)|0.4.9 | | |1 |
-|survParamSim |0.1.6 | | | |
-|swaprinc |1.0.1 | | | |
-|[SWMPrExtension](failures.md#swmprextension)|2.2.4.2 |1 | | |
-|[SynDI](problems.md#syndi)|0.1.0 | | |1 |
-|[takos](problems.md#takos)|0.2.0 | | |2 |
-|temperatureresponse |0.2 | | | |
-|[tergm](problems.md#tergm)|4.1.1 |__+1__ | | |
-|tergmLite |2.6.1 | | | |
-|[texPreview](problems.md#texpreview)|2.0.0 |2 | |1 |
-|[texreg](problems.md#texreg)|1.38.6 | | |2 |
-|theft |0.4.2.4 | | | |
-|tibbletime |0.1.8 | | | |
-|[tidybayes](problems.md#tidybayes)|3.0.4 | | |2 |
-|[tidycat](problems.md#tidycat)|0.1.2 | | |1 |
-|tidycmprsk |0.2.0 | | | |
-|tidycomm |0.2.1 | | | |
-|TidyDensity |1.2.5 | | | |
-|tidyfit |0.6.4 | | | |
-|tidymodels |1.1.0 | | | |
-|[tidyquant](problems.md#tidyquant)|1.0.7 | | |1 |
-|tidytext |0.4.1 | | | |
-|tidyverse |2.0.0 | | | |
-|[timetk](problems.md#timetk)|2.8.3 |2 | |1 |
-|tipr |1.0.1 | | | |
-|[tipsae](problems.md#tipsae)|0.0.13 | | |4 |
-|TOSTER |0.7.1 | | | |
-|tsna |0.3.5 | | | |
-|[TSS.RESTREND](problems.md#tssrestrend)|0.3.1 | | |1 |
-|urbin |0.1-12 | | | |
-|utile.visuals |0.3.3 | | | |
-|[valr](problems.md#valr)|0.6.8 | | |1 |
-|VBLPCM |2.4.9 | | | |
-|visR |0.3.1 | | | |
-|[webSDM](problems.md#websdm)|1.1-3 | | |1 |
-|[whippr](problems.md#whippr)|0.1.2 | | |1 |
-|whitewater |0.1.3 | | | |
-|widyr |0.1.5 | | | |
-|wooldridge |1.4-3 | | | |
-|wrappedtools |0.9.1 | | | |
-|xergm.common |1.7.8 | | | |
+|package |version |error |warning |note |
+|:------------|:-------|:-----|:-------|:----|
+|Bergm |5.0.7 | | | |
+|BFpack |1.2.3 | | | |
+|[Blaunet](problems.md#blaunet)|2.2.1 | | |1 |
+|[broom](problems.md#broom)|1.0.5 |1 | | |
+|[btergm](problems.md#btergm)|1.10.11 | | |1 |
+|[dnr](problems.md#dnr)|0.3.5 | | |2 |
+|EpiModel |2.4.0 | | | |
+|ergm.count |4.1.1 | | | |
+|ergm.ego |1.1.0 | | | |
+|ergm.multi |0.2.0 | | | |
+|ergm.rank |4.1.0 | | | |
+|ergMargins |1.1 | | | |
+|ergmgp |0.1-1 | | | |
+|[ergmito](problems.md#ergmito)|0.3-1 | | |1 |
+|fergm |1.1.4 | | | |
+|hergm |4.1-10 | | | |
+|[latentnet](problems.md#latentnet)|2.10.6 | | |4 |
+|[lolog](failures.md#lolog)|1.3.1 |1 | |1 |
+|mlergm |0.8 | | | |
+|motifr |1.0.0 | | | |
+|ndtv |0.13.3 | | | |
+|nemBM |1.00.01 | | | |
+|netmediate |0.1.2 | | | |
+|NetMix |0.2.0.2 | | | |
+|RDS |0.9-7 | | | |
+|[sand](problems.md#sand)|2.0.0 | | |2 |
+|[stargazer](problems.md#stargazer)|5.2.3 | | |1 |
+|[statnet](problems.md#statnet)|2019.6 | | |2 |
+|[statnetWeb](problems.md#statnetweb)|0.5.6 | | |1 |
+|tergm |4.2.0 | | | |
+|tergmLite |2.6.1 | | | |
+|[texreg](problems.md#texreg)|1.39.3 |1 | |2 |
+|tsna |0.3.5 | | | |
+|VBLPCM |2.4.9 | | | |
+|xergm.common |1.7.8 | | | |
diff --git a/revdep/cran.md b/revdep/cran.md
index 0040c210e..59a6e61e4 100644
--- a/revdep/cran.md
+++ b/revdep/cran.md
@@ -1,24 +1,12 @@
## revdepcheck results
-We checked 312 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+We checked 35 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
- * We saw 2 new problems
- * We failed to check 2 packages
+ * We saw 0 new problems
+ * We failed to check 1 packages
Issues with CRAN packages are summarised below.
-### New problems
-(This reports the first line of each new failure)
-
-* EpiModel
- checking examples ... ERROR
- checking tests ...
- checking re-building of vignette outputs ... ERROR
-
-* tergm
- checking tests ...
-
### Failed to check
-* eoffice (NA)
-* SWMPrExtension (NA)
+* lolog (NA)
diff --git a/revdep/failures.md b/revdep/failures.md
index e4b94ef5b..8bdc97d01 100644
--- a/revdep/failures.md
+++ b/revdep/failures.md
@@ -1,128 +1,26 @@
-# eoffice
+# lolog
-* Version: 0.2.2
-* GitHub: NA
-* Source code: https://github.com/cran/eoffice
-* Date/Publication: 2022-10-05 07:30:02 UTC
-* Number of recursive dependencies: 107
+* Version: 1.3.1
+* GitHub: https://github.com/statnet/lolog
+* Source code: https://github.com/cran/lolog
+* Date/Publication: 2023-12-07 12:40:02 UTC
+* Number of recursive dependencies: 86
-Run `revdep_details(, "eoffice")` for more info
+Run `revdepcheck::revdep_details(, "lolog")` for more info
## In both
-* checking whether package ‘eoffice’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/srv/scratch/z3528859/github/statnet/ergm/revdep/checks/eoffice/new/eoffice.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘eoffice’ ...
-** package ‘eoffice’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/srv/scratch/z3528859/R-4.3.0/library/magick/libs/magick.so':
- /apps/z_install_tree/linux-rocky8-ivybridge/gcc-12.2.0/glib-2.74.1-jrm3i3hfvjbyqoo4hipwrurprh3uteor/lib/libgobject-2.0.so.0: undefined symbol: g_uri_ref
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘eoffice’
-* removing ‘/srv/scratch/z3528859/github/statnet/ergm/revdep/checks/eoffice/new/eoffice.Rcheck/eoffice’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘eoffice’ ...
-** package ‘eoffice’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/srv/scratch/z3528859/R-4.3.0/library/magick/libs/magick.so':
- /apps/z_install_tree/linux-rocky8-ivybridge/gcc-12.2.0/glib-2.74.1-jrm3i3hfvjbyqoo4hipwrurprh3uteor/lib/libgobject-2.0.so.0: undefined symbol: g_uri_ref
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘eoffice’
-* removing ‘/srv/scratch/z3528859/github/statnet/ergm/revdep/checks/eoffice/old/eoffice.Rcheck/eoffice’
-
-
-```
-# SWMPrExtension
-
-
-
-* Version: 2.2.4.2
-* GitHub: https://github.com/NOAA-OCM/SWMPrExtension
-* Source code: https://github.com/cran/SWMPrExtension
-* Date/Publication: 2023-04-20 22:12:34 UTC
-* Number of recursive dependencies: 147
+* R CMD check timed out
+
-Run `revdep_details(, "SWMPrExtension")` for more info
-
-
-
-## In both
-
-* checking whether package ‘SWMPrExtension’ can be installed ... ERROR
+* checking installed package size ... NOTE
```
- Installation failed.
- See ‘/srv/scratch/z3528859/github/statnet/ergm/revdep/checks/SWMPrExtension/new/SWMPrExtension.Rcheck/00install.out’ for details.
+ installed size is 27.8Mb
+ sub-directories of 1Mb or more:
+ libs 26.2Mb
```
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘SWMPrExtension’ ...
-** package ‘SWMPrExtension’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/srv/scratch/z3528859/R-4.3.0/library/magick/libs/magick.so':
- /apps/z_install_tree/linux-rocky8-ivybridge/gcc-12.2.0/glib-2.74.1-jrm3i3hfvjbyqoo4hipwrurprh3uteor/lib/libgobject-2.0.so.0: undefined symbol: g_uri_ref
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘SWMPrExtension’
-* removing ‘/srv/scratch/z3528859/github/statnet/ergm/revdep/checks/SWMPrExtension/new/SWMPrExtension.Rcheck/SWMPrExtension’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘SWMPrExtension’ ...
-** package ‘SWMPrExtension’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/srv/scratch/z3528859/R-4.3.0/library/magick/libs/magick.so':
- /apps/z_install_tree/linux-rocky8-ivybridge/gcc-12.2.0/glib-2.74.1-jrm3i3hfvjbyqoo4hipwrurprh3uteor/lib/libgobject-2.0.so.0: undefined symbol: g_uri_ref
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘SWMPrExtension’
-* removing ‘/srv/scratch/z3528859/github/statnet/ergm/revdep/checks/SWMPrExtension/old/SWMPrExtension.Rcheck/SWMPrExtension’
-
-
-```
diff --git a/revdep/problems.md b/revdep/problems.md
index 34471c66b..840810882 100644
--- a/revdep/problems.md
+++ b/revdep/problems.md
@@ -1,112 +1,14 @@
-# Amelia
-
-
-
-* Version: 1.8.1
-* GitHub: NA
-* Source code: https://github.com/cran/Amelia
-* Date/Publication: 2022-11-19 19:40:29 UTC
-* Number of recursive dependencies: 48
-
-Run `revdep_details(, "Amelia")` for more info
-
-
-
-## In both
-
-* checking C++ specification ... NOTE
- ```
- Specified C++11: please drop specification unless essential
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 5.9Mb
- sub-directories of 1Mb or more:
- doc 1.4Mb
- libs 3.8Mb
- ```
-
-# amt
-
-
-
-* Version: 0.2.1.0
-* GitHub: https://github.com/jmsigner/amt
-* Source code: https://github.com/cran/amt
-* Date/Publication: 2023-03-28 08:20:02 UTC
-* Number of recursive dependencies: 149
-
-Run `revdep_details(, "amt")` for more info
-
-
-
-## In both
-
-* checking examples ... ERROR
- ```
- Running examples in ‘amt-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: time_of_day
- > ### Title: Time of the day when a fix was taken
- > ### Aliases: time_of_day time_of_day.track_xyt time_of_day.steps_xyt
- >
- > ### ** Examples
- >
- > data(deer)
- > deer |> time_of_day()
- Error in C_force_tz(to_posixct(time), tz, roll_dst) :
- CCTZ: Unrecognized output timezone: ":/etc/localtime"
- Calls: time_of_day ... -> .force_tz -> from_posixct -> C_force_tz
- Execution halted
- ```
-
-# AovBay
+# Blaunet
-* Version: 0.1.0
+* Version: 2.2.1
* GitHub: NA
-* Source code: https://github.com/cran/AovBay
-* Date/Publication: 2021-07-22 06:30:02 UTC
-* Number of recursive dependencies: 144
-
-Run `revdep_details(, "AovBay")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 41.3Mb
- sub-directories of 1Mb or more:
- libs 41.0Mb
- ```
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘RcppParallel’
- All declared Imports should be used.
- ```
-
-* checking for GNU extensions in Makefiles ... NOTE
- ```
- GNU make is a SystemRequirements.
- ```
-
-# archetyper
-
-
-
-* Version: 0.1.0
-* GitHub: https://github.com/mkorvink/archetyper
-* Source code: https://github.com/cran/archetyper
-* Date/Publication: 2021-03-17 14:00:05 UTC
-* Number of recursive dependencies: 181
+* Source code: https://github.com/cran/Blaunet
+* Date/Publication: 2022-09-27 08:10:08 UTC
+* Number of recursive dependencies: 75
-Run `revdep_details(, "archetyper")` for more info
+Run `revdepcheck::revdep_details(, "Blaunet")` for more info
@@ -115,220 +17,197 @@ Run `revdep_details(, "archetyper")` for more info
* checking dependencies in R code ... NOTE
```
Namespaces in Imports field not imported from:
- ‘bannerCommenter’ ‘config’ ‘feather’ ‘here’ ‘knitr’ ‘log4r’ ‘ps’
- ‘rmarkdown’ ‘skimr’ ‘snakecase’ ‘testthat’ ‘tidyverse’
+ ‘digest’ ‘ergm’ ‘foreign’ ‘gWidgets2’ ‘gWidgets2tcltk’ ‘haven’
+ ‘plot3D’ ‘plot3Drgl’ ‘rgl’ ‘sna’ ‘statnet.common’
All declared Imports should be used.
```
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# autocogs
+# broom
-* Version: 0.1.4
-* GitHub: https://github.com/schloerke/autocogs
-* Source code: https://github.com/cran/autocogs
-* Date/Publication: 2021-05-29 17:00:05 UTC
-* Number of recursive dependencies: 74
+* Version: 1.0.5
+* GitHub: https://github.com/tidymodels/broom
+* Source code: https://github.com/cran/broom
+* Date/Publication: 2023-06-09 22:50:02 UTC
+* Number of recursive dependencies: 305
-Run `revdep_details(, "autocogs")` for more info
+Run `revdepcheck::revdep_details(, "broom")` for more info
## In both
-* checking dependencies in R code ... NOTE
+* checking tests ...
```
- Namespaces in Imports field not imported from:
- ‘broom’ ‘diptest’ ‘ggplot2’ ‘hexbin’ ‘MASS’ ‘moments’
- All declared Imports should be used.
+ Running ‘spelling.R’
+ Running ‘test-all.R’
+ ERROR
+ Running the tests in ‘tests/test-all.R’ failed.
+ Last 13 lines of output:
+ ▆
+ 1. └─lme4::lmer(mpg ~ wt + (1 | cyl), data = mtcars) at test-stats-anova.R:133:3
+ 2. ├─base::do.call(...)
+ 3. └─lme4 (local) ``(...)
+ 4. ├─base::do.call(...)
+ ...
+ 5. └─methods (local) ``(...)
+ 6. └─methods::new(def, ...)
+ 7. ├─methods::initialize(value, ...)
+ 8. └─methods::initialize(value, ...)
+ 9. └─.Object$initialize(...)
+ 10. └─lme4 (local) initializePtr()
+
+ [ FAIL 1 | WARN 0 | SKIP 81 | PASS 1027 ]
+ Error: Test failures
+ Execution halted
```
-# BasketballAnalyzeR
+# btergm
-* Version: 0.5.0
-* GitHub: https://github.com/sndmrc/BasketballAnalyzeR
-* Source code: https://github.com/cran/BasketballAnalyzeR
-* Date/Publication: 2020-06-26 09:00:11 UTC
-* Number of recursive dependencies: 74
+* Version: 1.10.11
+* GitHub: https://github.com/leifeld/btergm
+* Source code: https://github.com/cran/btergm
+* Date/Publication: 2023-10-05 20:10:02 UTC
+* Number of recursive dependencies: 100
-Run `revdep_details(, "BasketballAnalyzeR")` for more info
+Run `revdepcheck::revdep_details(, "btergm")` for more info
## In both
-* checking dependencies in R code ... NOTE
+* checking data for non-ASCII characters ... NOTE
```
- Namespaces in Imports field not imported from:
- ‘circlize’ ‘hexbin’ ‘scales’ ‘sna’
- All declared Imports should be used.
+ Note: found 89 marked UTF-8 strings
```
-# BayesPostEst
+# dnr
-* Version: 0.3.2
-* GitHub: https://github.com/ShanaScogin/BayesPostEst
-* Source code: https://github.com/cran/BayesPostEst
-* Date/Publication: 2021-11-11 08:10:05 UTC
-* Number of recursive dependencies: 159
+* Version: 0.3.5
+* GitHub: NA
+* Source code: https://github.com/cran/dnr
+* Date/Publication: 2020-11-30 17:10:03 UTC
+* Number of recursive dependencies: 73
-Run `revdep_details(, "BayesPostEst")` for more info
+Run `revdepcheck::revdep_details(, "dnr")` for more info
## In both
-* checking package dependencies ... ERROR
+* checking package subdirectories ... NOTE
```
- Packages required but not available: 'R2jags', 'runjags', 'rjags'
-
- See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
- manual.
+ Problems with news in ‘NEWS.md’:
+ No news entries found.
```
-# Blaunet
-
-
-
-* Version: 2.2.1
-* GitHub: NA
-* Source code: https://github.com/cran/Blaunet
-* Date/Publication: 2022-09-27 08:10:08 UTC
-* Number of recursive dependencies: 75
-
-Run `revdep_details(, "Blaunet")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
+* checking Rd files ... NOTE
```
- Namespaces in Imports field not imported from:
- ‘digest’ ‘ergm’ ‘foreign’ ‘gWidgets2’ ‘gWidgets2tcltk’ ‘haven’
- ‘plot3D’ ‘plot3Drgl’ ‘rgl’ ‘sna’ ‘statnet.common’
- All declared Imports should be used.
+ checkRd: (-1) dnr.Rd:12: Escaped LaTeX specials: \#
```
-# broom.mixed
+# ergmito
-* Version: 0.2.9.4
-* GitHub: https://github.com/bbolker/broom.mixed
-* Source code: https://github.com/cran/broom.mixed
-* Date/Publication: 2022-04-17 17:42:29 UTC
-* Number of recursive dependencies: 164
+* Version: 0.3-1
+* GitHub: https://github.com/muriteams/ergmito
+* Source code: https://github.com/cran/ergmito
+* Date/Publication: 2023-06-14 10:42:05 UTC
+* Number of recursive dependencies: 69
-Run `revdep_details(, "broom.mixed")` for more info
+Run `revdepcheck::revdep_details(, "ergmito")` for more info
## In both
-* checking package dependencies ... NOTE
+* checking installed package size ... NOTE
```
- Packages suggested but not available for checking: 'glmmADMB', 'R2jags'
+ installed size is 7.3Mb
+ sub-directories of 1Mb or more:
+ libs 5.9Mb
```
-# card
+# latentnet
-* Version: 0.1.0
-* GitHub: https://github.com/asshah4/card
-* Source code: https://github.com/cran/card
-* Date/Publication: 2020-09-03 07:52:10 UTC
-* Number of recursive dependencies: 147
+* Version: 2.10.6
+* GitHub: https://github.com/statnet/latentnet
+* Source code: https://github.com/cran/latentnet
+* Date/Publication: 2022-05-11 12:30:05 UTC
+* Number of recursive dependencies: 116
-Run `revdep_details(, "card")` for more info
+Run `revdepcheck::revdep_details(, "latentnet")` for more info
## In both
-* checking package subdirectories ... NOTE
+* checking package dependencies ... NOTE
```
- Problems with news in ‘NEWS.md’:
- No news entries found.
+ Package suggested but not available for checking: ‘ergm.userterms’
```
-* checking dependencies in R code ... NOTE
+* checking Rd files ... NOTE
```
- Namespaces in Imports field not imported from:
- ‘Hmisc’ ‘methods’ ‘readr’ ‘recipes’ ‘sf’ ‘stringr’ ‘utils’
- All declared Imports should be used.
+ checkRd: (-1) simulate.ergmm.Rd:35: Escaped LaTeX specials: \$
+ checkRd: (-1) simulate.ergmm.Rd:36: Escaped LaTeX specials: \$
```
-# catfun
-
-
-
-* Version: 0.1.4
-* GitHub: NA
-* Source code: https://github.com/cran/catfun
-* Date/Publication: 2019-06-14 14:10:03 UTC
-* Number of recursive dependencies: 112
-
-Run `revdep_details(, "catfun")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
+* checking Rd cross-references ... NOTE
```
- Namespaces in Imports field not imported from:
- ‘broom’ ‘epitools’
- All declared Imports should be used.
+ Unknown package ‘ergm.userterms’ in Rd xrefs
```
-* checking LazyData ... NOTE
+* checking for GNU extensions in Makefiles ... NOTE
```
- 'LazyData' is specified without a 'data' directory
+ GNU make is a SystemRequirements.
```
-# convergEU
+# lolog
-* Version: 0.5.4
-* GitHub: NA
-* Source code: https://github.com/cran/convergEU
-* Date/Publication: 2023-02-18 08:50:02 UTC
-* Number of recursive dependencies: 175
+* Version: 1.3.1
+* GitHub: https://github.com/statnet/lolog
+* Source code: https://github.com/cran/lolog
+* Date/Publication: 2023-12-07 12:40:02 UTC
+* Number of recursive dependencies: 86
-Run `revdep_details(, "convergEU")` for more info
+Run `revdepcheck::revdep_details(, "lolog")` for more info
## In both
-* checking data for non-ASCII characters ... NOTE
+* R CMD check timed out
+
+
+* checking installed package size ... NOTE
```
- Note: found 1 marked UTF-8 string
+ installed size is 27.8Mb
+ sub-directories of 1Mb or more:
+ libs 26.2Mb
```
-# csdata
+# sand
-* Version: 2023.5.22
-* GitHub: https://github.com/csids/csdata
-* Source code: https://github.com/cran/csdata
-* Date/Publication: 2023-05-22 10:10:18 UTC
-* Number of recursive dependencies: 136
+* Version: 2.0.0
+* GitHub: https://github.com/kolaczyk/sand
+* Source code: https://github.com/cran/sand
+* Date/Publication: 2020-07-02 07:20:06 UTC
+* Number of recursive dependencies: 156
-Run `revdep_details(, "csdata")` for more info
+Run `revdepcheck::revdep_details(, "sand")` for more info
@@ -336,2797 +215,137 @@ Run `revdep_details(, "csdata")` for more info
* checking package dependencies ... NOTE
```
- Package suggested but not available for checking: ‘geojsonio’
+ Package suggested but not available for checking: ‘networkTomography’
```
-# describedata
-
-
-
-* Version: 0.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/describedata
-* Date/Publication: 2019-08-02 11:50:02 UTC
-* Number of recursive dependencies: 69
-
-Run `revdep_details(, "describedata")` for more info
-
-
-
-## In both
-
-* checking LazyData ... NOTE
+* checking data for non-ASCII characters ... NOTE
```
- 'LazyData' is specified without a 'data' directory
+ Note: found 6 marked UTF-8 strings
```
-# didimputation
+# stargazer
-* Version: 0.3.0
+* Version: 5.2.3
* GitHub: NA
-* Source code: https://github.com/cran/didimputation
-* Date/Publication: 2022-08-25 20:02:33 UTC
-* Number of recursive dependencies: 64
+* Source code: https://github.com/cran/stargazer
+* Date/Publication: 2022-03-04 11:50:02 UTC
+* Number of recursive dependencies: 0
-Run `revdep_details(, "didimputation")` for more info
+Run `revdepcheck::revdep_details(, "stargazer")` for more info
## In both
-* checking C++ specification ... NOTE
+* checking package dependencies ... NOTE
```
- Specified C++11: please drop specification unless essential
+ Packages which this enhances but not available for checking:
+ 'brglm', 'censReg', 'dynlm', 'eha', 'erer', 'fGarch', 'glmx',
+ 'mclogit', 'rms', 'sampleSelection'
```
-# disto
+# statnet
-* Version: 0.2.0
-* GitHub: https://github.com/talegari/disto
-* Source code: https://github.com/cran/disto
-* Date/Publication: 2018-08-02 12:50:02 UTC
-* Number of recursive dependencies: 124
+* Version: 2019.6
+* GitHub: https://github.com/statnet/statnet
+* Source code: https://github.com/cran/statnet
+* Date/Publication: 2019-06-14 08:00:06 UTC
+* Number of recursive dependencies: 99
-Run `revdep_details(, "disto")` for more info
+Run `revdepcheck::revdep_details(, "statnet")` for more info
## In both
-* checking package subdirectories ... NOTE
+* checking package dependencies ... NOTE
```
- Problems with news in ‘NEWS.md’:
- No news entries found.
+ Package suggested but not available for checking: ‘networksis’
```
-* checking dependencies in R code ... NOTE
+* checking startup messages can be suppressed ... NOTE
```
- Namespaces in Imports field not imported from:
- ‘dplyr’ ‘proxy’
- All declared Imports should be used.
+ unable to reach CRAN
+
+ It looks like this package (or a package it requires) has a startup
+ message which cannot be suppressed: see ?packageStartupMessage.
```
-# dnr
+# statnetWeb
-* Version: 0.3.5
+* Version: 0.5.6
* GitHub: NA
-* Source code: https://github.com/cran/dnr
-* Date/Publication: 2020-11-30 17:10:03 UTC
-* Number of recursive dependencies: 73
+* Source code: https://github.com/cran/statnetWeb
+* Date/Publication: 2020-08-05 18:00:03 UTC
+* Number of recursive dependencies: 67
-Run `revdep_details(, "dnr")` for more info
+Run `revdepcheck::revdep_details(, "statnetWeb")` for more info
## In both
-* checking package subdirectories ... NOTE
- ```
- Problems with news in ‘NEWS.md’:
- No news entries found.
- ```
-
-* checking Rd files ... NOTE
+* checking LazyData ... NOTE
```
- checkRd: (-1) dnr.Rd:12: Escaped LaTeX specials: \#
+ 'LazyData' is specified without a 'data' directory
```
-# dotwhisker
+# texreg
-* Version: 0.7.4
-* GitHub: https://github.com/fsolt/dotwhisker
-* Source code: https://github.com/cran/dotwhisker
-* Date/Publication: 2021-09-02 14:50:35 UTC
-* Number of recursive dependencies: 74
+* Version: 1.39.3
+* GitHub: https://github.com/leifeld/texreg
+* Source code: https://github.com/cran/texreg
+* Date/Publication: 2023-11-10 00:00:03 UTC
+* Number of recursive dependencies: 104
-Run `revdep_details(, "dotwhisker")` for more info
+Run `revdepcheck::revdep_details(, "texreg")` for more info
## In both
-* checking Rd cross-references ... NOTE
+* checking tests ...
```
- Unknown package ‘broomExtra’ in Rd xrefs
+ Running ‘testthat.R’
+ ERROR
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ ▆
+ 1. └─lme4::lmer(...) at test-texreg.R:169:3
+ 2. ├─base::do.call(...)
+ 3. └─lme4 (local) ``(...)
+ 4. ├─base::do.call(...)
+ 5. └─methods (local) ``(...)
+ 6. └─methods::new(def, ...)
+ 7. ├─methods::initialize(value, ...)
+ 8. └─methods::initialize(value, ...)
+ 9. └─.Object$initialize(...)
+ 10. └─lme4 (local) initializePtr()
+
+ [ FAIL 1 | WARN 0 | SKIP 32 | PASS 213 ]
+ Error: Test failures
+ Execution halted
```
-# dplyr
-
-
-
-* Version: 1.1.2
-* GitHub: https://github.com/tidyverse/dplyr
-* Source code: https://github.com/cran/dplyr
-* Date/Publication: 2023-04-20 14:00:03 UTC
-* Number of recursive dependencies: 96
-
-Run `revdep_details(, "dplyr")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Packages suggested but not available for checking: 'RMySQL', 'RPostgreSQL'
- ```
-
-* checking Rd cross-references ... NOTE
- ```
- Package unavailable to check Rd xrefs: ‘RMySQL’
- ```
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 4 marked UTF-8 strings
- ```
-
-# dragon
-
-
-
-* Version: 1.2.1
-* GitHub: https://github.com/sjspielman/dragon
-* Source code: https://github.com/cran/dragon
-* Date/Publication: 2022-04-08 08:42:33 UTC
-* Number of recursive dependencies: 130
-
-Run `revdep_details(, "dragon")` for more info
-
-
-
-## In both
-
-* checking package subdirectories ... NOTE
- ```
- Problems with news in ‘NEWS.md’:
- No news entries found.
- ```
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘htmltools’
- All declared Imports should be used.
- ```
-
-# eoffice
-
-
-
-* Version: 0.2.2
-* GitHub: NA
-* Source code: https://github.com/cran/eoffice
-* Date/Publication: 2022-10-05 07:30:02 UTC
-* Number of recursive dependencies: 107
-
-Run `revdep_details(, "eoffice")` for more info
-
-
-
-## In both
-
-* checking whether package ‘eoffice’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/srv/scratch/z3528859/github/statnet/ergm/revdep/checks/eoffice/new/eoffice.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘eoffice’ ...
-** package ‘eoffice’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/srv/scratch/z3528859/R-4.3.0/library/magick/libs/magick.so':
- /apps/z_install_tree/linux-rocky8-ivybridge/gcc-12.2.0/glib-2.74.1-jrm3i3hfvjbyqoo4hipwrurprh3uteor/lib/libgobject-2.0.so.0: undefined symbol: g_uri_ref
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘eoffice’
-* removing ‘/srv/scratch/z3528859/github/statnet/ergm/revdep/checks/eoffice/new/eoffice.Rcheck/eoffice’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘eoffice’ ...
-** package ‘eoffice’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/srv/scratch/z3528859/R-4.3.0/library/magick/libs/magick.so':
- /apps/z_install_tree/linux-rocky8-ivybridge/gcc-12.2.0/glib-2.74.1-jrm3i3hfvjbyqoo4hipwrurprh3uteor/lib/libgobject-2.0.so.0: undefined symbol: g_uri_ref
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘eoffice’
-* removing ‘/srv/scratch/z3528859/github/statnet/ergm/revdep/checks/eoffice/old/eoffice.Rcheck/eoffice’
-
-
-```
-# EpiModel
-
-
-
-* Version: 2.3.2
-* GitHub: https://github.com/EpiModel/EpiModel
-* Source code: https://github.com/cran/EpiModel
-* Date/Publication: 2023-02-16 23:30:02 UTC
-* Number of recursive dependencies: 120
-
-Run `revdep_details(, "EpiModel")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘EpiModel-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: as.data.frame.netdx
- > ### Title: Extract Timed Edgelists for netdx Objects
- > ### Aliases: as.data.frame.netdx
- > ### Keywords: extract
- >
- > ### ** Examples
- >
- ...
- Maximizing the pseudolikelihood.
- Finished MPLE.
- >
- > # Simulate the network with netdx
- > dx <- netdx(est, nsims = 3, nsteps = 10, keep.tedgelist = TRUE,
- + verbose = FALSE)
- Error in simulate.formula_lhs(object = TARGET_STATS ~ edges, nsim = if (dynamic == :
- No applicable method for LHS of type ‘NULL’.
- Calls: netdx ... eval -> eval -> -> simulate.formula_lhs
- Execution halted
- ```
-
-* checking tests ...
- ```
- Running ‘test-all.R’
- ERROR
- Running the tests in ‘tests/test-all.R’ failed.
- Last 13 lines of output:
- 16. ├─stats::simulate(...)
- 17. └─ergm:::simulate.formula_lhs(...)
- ── Error ('test-utils.R:38:3'): color_tea ──────────────────────────────────────
- Error in `UseMethod("get.vertex.attribute")`: no applicable method for 'get.vertex.attribute' applied to an object of class "NULL"
- Backtrace:
- ▆
- 1. └─EpiModel::netsim(est, param, init, control) at test-utils.R:38:2
- 2. └─EpiModel::crosscheck.net(x, param, init, control)
- 3. ├─get_vertex_attribute(nw, "status") %in% c("s", "i", "r")
- 4. └─EpiModel::get_vertex_attribute(nw, "status")
- 5. └─network::get.vertex.attribute(...)
-
- [ FAIL 37 | WARN 37 | SKIP 119 | PASS 376 ]
- Error: Test failures
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘attributes-and-summary-statistics.Rmd’ using rmarkdown
-
- Quitting from lines 303-338 [tracker-list] (attributes-and-summary-statistics.Rmd)
- Error: processing vignette 'attributes-and-summary-statistics.Rmd' failed with diagnostics:
- no applicable method for 'get.vertex.attribute' applied to an object of class "NULL"
- --- failed re-building ‘attributes-and-summary-statistics.Rmd’
-
- --- re-building ‘Intro.Rmd’ using rmarkdown
- --- finished re-building ‘Intro.Rmd’
- ...
- --- failed re-building ‘model-parameters.Rmd’
-
- --- re-building ‘network-objects.Rmd’ using rmarkdown
- --- finished re-building ‘network-objects.Rmd’
-
- SUMMARY: processing the following files failed:
- ‘attributes-and-summary-statistics.Rmd’ ‘model-parameters.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-# ERSA
-
-
-
-* Version: 0.1.3
-* GitHub: NA
-* Source code: https://github.com/cran/ERSA
-* Date/Publication: 2020-09-22 23:00:02 UTC
-* Number of recursive dependencies: 99
-
-Run `revdep_details(, "ERSA")` for more info
-
-
-
-## In both
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# estimatr
-
-
-
-* Version: 1.0.0
-* GitHub: https://github.com/DeclareDesign/estimatr
-* Source code: https://github.com/cran/estimatr
-* Date/Publication: 2022-07-04 12:40:05 UTC
-* Number of recursive dependencies: 99
-
-Run `revdep_details(, "estimatr")` for more info
-
-
-
-## In both
-
-* checking C++ specification ... NOTE
- ```
- Specified C++11: please drop specification unless essential
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 29.6Mb
- sub-directories of 1Mb or more:
- libs 29.2Mb
- ```
-
-# eurostat
-
-
-
-* Version: 3.8.2
-* GitHub: https://github.com/rOpenGov/eurostat
-* Source code: https://github.com/cran/eurostat
-* Date/Publication: 2023-03-06 15:40:02 UTC
-* Number of recursive dependencies: 102
-
-Run `revdep_details(, "eurostat")` for more info
-
-
-
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 1054 marked UTF-8 strings
- ```
-
-# ExpDes.pt
-
-
-
-* Version: 1.2.2
-* GitHub: NA
-* Source code: https://github.com/cran/ExpDes.pt
-* Date/Publication: 2021-10-05 04:20:08 UTC
-* Number of recursive dependencies: 1
-
-Run `revdep_details(, "ExpDes.pt")` for more info
-
-
-
-## In both
-
-* checking Rd files ... NOTE
- ```
- checkRd: (-1) ccF.Rd:5: Escaped LaTeX specials: \&
- checkRd: (-1) ccF.Rd:32: Escaped LaTeX specials: \&
- checkRd: (-1) ccF.Rd:29: Escaped LaTeX specials: \&
- ```
-
-# export
-
-
-
-* Version: 0.3.0
-* GitHub: https://github.com/tomwenseleers/export
-* Source code: https://github.com/cran/export
-* Date/Publication: 2022-12-07 15:40:02 UTC
-* Number of recursive dependencies: 97
-
-Run `revdep_details(, "export")` for more info
-
-
-
-## In both
-
-* checking examples ... ERROR
- ```
- Running examples in ‘export-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: graph2bitmap
- > ### Title: Save currently active R graph to bitmap format
- > ### Aliases: graph2bitmap graph2png graph2tif graph2jpg
- >
- > ### ** Examples
- >
- > # Create a file name
- ...
- > graph2tif(x = x, file = filen, dpi = 400, height = 5, aspectr = 4)
- TIFFOpen: /scratch/pbs.4432494.kman.restech.unsw.edu.tif: Permission denied.
- Warning in dev.off(ii) :
- unable to open TIFF file '/scratch/pbs.4432494.kman.restech.unsw.edu.tif'
- Exported graph as /scratch/pbs.4432494.kman.restech.unsw.edu.tif
- > graph2jpg(x = x, file = filen, dpi = 400, height = 5, aspectr = 4)
- Error in grid.newpage() :
- could not open file '/scratch/pbs.4432494.kman.restech.unsw.edu.jpeg'
- Calls: graph2jpg ... graph2bitmap -> myplot -> print -> print.ggplot -> grid.newpage
- Execution halted
- ```
-
-# eyetrackingR
-
-
-
-* Version: 0.2.0
-* GitHub: https://github.com/samhforbes/eyetrackingR
-* Source code: https://github.com/cran/eyetrackingR
-* Date/Publication: 2021-09-27 10:00:14 UTC
-* Number of recursive dependencies: 97
-
-Run `revdep_details(, "eyetrackingR")` for more info
-
-
-
-## In both
-
-* checking package subdirectories ... NOTE
- ```
- Problems with news in ‘NEWS.md’:
- No news entries found.
- ```
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘rlang’
- All declared Imports should be used.
- ```
-
-# finalfit
-
-
-
-* Version: 1.0.6
-* GitHub: https://github.com/ewenharrison/finalfit
-* Source code: https://github.com/cran/finalfit
-* Date/Publication: 2023-01-14 13:40:02 UTC
-* Number of recursive dependencies: 157
-
-Run `revdep_details(, "finalfit")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 5.6Mb
- sub-directories of 1Mb or more:
- doc 4.9Mb
- ```
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘tidyselect’
- All declared Imports should be used.
- ```
-
-# fivethirtyeight
-
-
-
-* Version: 0.6.2
-* GitHub: https://github.com/rudeboybert/fivethirtyeight
-* Source code: https://github.com/cran/fivethirtyeight
-* Date/Publication: 2021-10-07 13:40:02 UTC
-* Number of recursive dependencies: 72
-
-Run `revdep_details(, "fivethirtyeight")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘fivethirtyeightdata’
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 5.0Mb
- sub-directories of 1Mb or more:
- data 3.8Mb
- ```
-
-* checking Rd cross-references ... NOTE
- ```
- Package unavailable to check Rd xrefs: ‘fivethirtyeightdata’
- ```
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 584 marked UTF-8 strings
- ```
-
-# flextable
-
-
-
-* Version: 0.9.1
-* GitHub: https://github.com/davidgohel/flextable
-* Source code: https://github.com/cran/flextable
-* Date/Publication: 2023-04-02 11:20:02 UTC
-* Number of recursive dependencies: 138
-
-Run `revdep_details(, "flextable")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Packages suggested but not available for checking:
- 'equatags', 'doconv', 'pdftools'
- ```
-
-# forestmodel
-
-
-
-* Version: 0.6.2
-* GitHub: NA
-* Source code: https://github.com/cran/forestmodel
-* Date/Publication: 2020-07-19 11:50:03 UTC
-* Number of recursive dependencies: 58
-
-Run `revdep_details(, "forestmodel")` for more info
-
-
-
-## In both
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# fwildclusterboot
-
-
-
-* Version: 0.13.0
-* GitHub: https://github.com/s3alfisc/fwildclusterboot
-* Source code: https://github.com/cran/fwildclusterboot
-* Date/Publication: 2023-02-26 01:00:13 UTC
-* Number of recursive dependencies: 124
-
-Run `revdep_details(, "fwildclusterboot")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 6.5Mb
- sub-directories of 1Mb or more:
- libs 5.4Mb
- ```
-
-# ggformula
-
-
-
-* Version: 0.10.4
-* GitHub: https://github.com/ProjectMOSAIC/ggformula
-* Source code: https://github.com/cran/ggformula
-* Date/Publication: 2023-04-11 14:50:02 UTC
-* Number of recursive dependencies: 133
-
-Run `revdep_details(, "ggformula")` for more info
-
-
-
-## In both
-
-* checking Rd cross-references ... NOTE
- ```
- Package unavailable to check Rd xrefs: ‘akima’
- ```
-
-# ghypernet
-
-
-
-* Version: 1.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/ghypernet
-* Date/Publication: 2021-10-15 13:30:05 UTC
-* Number of recursive dependencies: 98
-
-Run `revdep_details(, "ghypernet")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘methods’
- All declared Imports should be used.
- ```
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 11 marked UTF-8 strings
- ```
-
-# glmmfields
-
-
-
-* Version: 0.1.7
-* GitHub: https://github.com/seananderson/glmmfields
-* Source code: https://github.com/cran/glmmfields
-* Date/Publication: 2023-03-10 22:50:02 UTC
-* Number of recursive dependencies: 109
-
-Run `revdep_details(, "glmmfields")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 75.2Mb
- sub-directories of 1Mb or more:
- libs 74.4Mb
- ```
-
-* checking for GNU extensions in Makefiles ... NOTE
- ```
- GNU make is a SystemRequirements.
- ```
-
-# glmmTMB
-
-
-
-* Version: 1.1.7
-* GitHub: https://github.com/glmmTMB/glmmTMB
-* Source code: https://github.com/cran/glmmTMB
-* Date/Publication: 2023-04-05 21:03:31 UTC
-* Number of recursive dependencies: 160
-
-Run `revdep_details(, "glmmTMB")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 72.9Mb
- sub-directories of 1Mb or more:
- doc 1.3Mb
- libs 67.7Mb
- test_data 2.2Mb
- vignette_data 1.1Mb
- ```
-
-# goldfish
-
-
-
-* Version: 1.6.4
-* GitHub: https://github.com/snlab-ch/goldfish
-* Source code: https://github.com/cran/goldfish
-* Date/Publication: 2022-08-24 08:30:06 UTC
-* Number of recursive dependencies: 153
-
-Run `revdep_details(, "goldfish")` for more info
-
-
-
-## In both
-
-* checking C++ specification ... NOTE
- ```
- Specified C++11: please drop specification unless essential
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 11.0Mb
- sub-directories of 1Mb or more:
- libs 9.7Mb
- ```
-
-# greybox
-
-
-
-* Version: 1.0.8
-* GitHub: https://github.com/config-i1/greybox
-* Source code: https://github.com/cran/greybox
-* Date/Publication: 2023-04-02 15:30:07 UTC
-* Number of recursive dependencies: 72
-
-Run `revdep_details(, "greybox")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Package which this enhances but not available for checking: ‘vars’
- ```
-
-# gWQS
-
-
-
-* Version: 3.0.4
-* GitHub: NA
-* Source code: https://github.com/cran/gWQS
-* Date/Publication: 2021-05-20 09:30:02 UTC
-* Number of recursive dependencies: 103
-
-Run `revdep_details(, "gWQS")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘dplyr’
- All declared Imports should be used.
- ```
-
-# hbal
-
-
-
-* Version: 1.2.8
-* GitHub: NA
-* Source code: https://github.com/cran/hbal
-* Date/Publication: 2023-01-24 15:30:05 UTC
-* Number of recursive dependencies: 86
-
-Run `revdep_details(, "hbal")` for more info
-
-
-
-## In both
-
-* checking C++ specification ... NOTE
- ```
- Specified C++11: please drop specification unless essential
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 8.6Mb
- sub-directories of 1Mb or more:
- libs 8.3Mb
- ```
-
-# healthyR
-
-
-
-* Version: 0.2.1
-* GitHub: https://github.com/spsanderson/healthyR
-* Source code: https://github.com/cran/healthyR
-* Date/Publication: 2023-04-06 22:20:03 UTC
-* Number of recursive dependencies: 154
-
-Run `revdep_details(, "healthyR")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 5.5Mb
- sub-directories of 1Mb or more:
- data 1.5Mb
- doc 3.8Mb
- ```
-
-# heplots
-
-
-
-* Version: 1.4-2
-* GitHub: https://github.com/friendly/heplots
-* Source code: https://github.com/cran/heplots
-* Date/Publication: 2022-10-19 23:35:06 UTC
-* Number of recursive dependencies: 112
-
-Run `revdep_details(, "heplots")` for more info
-
-
-
-## In both
-
-* checking Rd cross-references ... NOTE
- ```
- Packages unavailable to check Rd xrefs: ‘Sleuth2’, ‘archdata’, ‘qqtest’
- ```
-
-# highcharter
-
-
-
-* Version: 0.9.4
-* GitHub: https://github.com/jbkunst/highcharter
-* Source code: https://github.com/cran/highcharter
-* Date/Publication: 2022-01-03 16:40:05 UTC
-* Number of recursive dependencies: 150
-
-Run `revdep_details(, "highcharter")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘geojsonio’
- ```
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 11 marked UTF-8 strings
- ```
-
-# huxtable
-
-
-
-* Version: 5.5.2
-* GitHub: https://github.com/hughjonesd/huxtable
-* Source code: https://github.com/cran/huxtable
-* Date/Publication: 2022-12-16 13:30:02 UTC
-* Number of recursive dependencies: 171
-
-Run `revdep_details(, "huxtable")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘R6’ ‘xml2’
- All declared Imports should be used.
- ```
-
-# IceSat2R
-
-
-
-* Version: 1.0.4
-* GitHub: https://github.com/mlampros/IceSat2R
-* Source code: https://github.com/cran/IceSat2R
-* Date/Publication: 2022-11-17 07:50:02 UTC
-* Number of recursive dependencies: 144
-
-Run `revdep_details(, "IceSat2R")` for more info
-
-
-
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 10 marked UTF-8 strings
- ```
-
-# industRial
-
-
-
-* Version: 0.1.0
-* GitHub: https://github.com/J-Ramalho/industRial
-* Source code: https://github.com/cran/industRial
-* Date/Publication: 2021-06-11 09:40:02 UTC
-* Number of recursive dependencies: 197
-
-Run `revdep_details(, "industRial")` for more info
-
-
-
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 2 marked UTF-8 strings
- ```
-
-# interactions
-
-
-
-* Version: 1.1.5
-* GitHub: https://github.com/jacob-long/interactions
-* Source code: https://github.com/cran/interactions
-* Date/Publication: 2021-07-02 07:00:04 UTC
-* Number of recursive dependencies: 99
-
-Run `revdep_details(, "interactions")` for more info
-
-
-
-## In both
-
-* checking Rd cross-references ... NOTE
- ```
- Package unavailable to check Rd xrefs: ‘pequod’
- ```
-
-# ivx
-
-
-
-* Version: 1.1.0
-* GitHub: https://github.com/kvasilopoulos/ivx
-* Source code: https://github.com/cran/ivx
-* Date/Publication: 2020-11-24 13:50:02 UTC
-* Number of recursive dependencies: 78
-
-Run `revdep_details(, "ivx")` for more info
-
-
-
-## In both
-
-* checking C++ specification ... NOTE
- ```
- Specified C++11: please drop specification unless essential
- ```
-
-# konfound
-
-
-
-* Version: 0.4.0
-* GitHub: https://github.com/jrosen48/konfound
-* Source code: https://github.com/cran/konfound
-* Date/Publication: 2021-06-01 07:40:05 UTC
-* Number of recursive dependencies: 141
-
-Run `revdep_details(, "konfound")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘mice’ ‘tibble’
- All declared Imports should be used.
- ```
-
-# latentnet
-
-
-
-* Version: 2.10.6
-* GitHub: https://github.com/statnet/latentnet
-* Source code: https://github.com/cran/latentnet
-* Date/Publication: 2022-05-11 12:30:05 UTC
-* Number of recursive dependencies: 115
-
-Run `revdep_details(, "latentnet")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘ergm.userterms’
- ```
-
-* checking Rd files ... NOTE
- ```
- checkRd: (-1) simulate.ergmm.Rd:35: Escaped LaTeX specials: \$
- checkRd: (-1) simulate.ergmm.Rd:36: Escaped LaTeX specials: \$
- ```
-
-* checking Rd cross-references ... NOTE
- ```
- Unknown package ‘ergm.userterms’ in Rd xrefs
- ```
-
-* checking for GNU extensions in Makefiles ... NOTE
- ```
- GNU make is a SystemRequirements.
- ```
-
-# lcsm
-
-
-
-* Version: 0.3.2
-* GitHub: https://github.com/milanwiedemann/lcsm
-* Source code: https://github.com/cran/lcsm
-* Date/Publication: 2023-02-25 23:40:02 UTC
-* Number of recursive dependencies: 136
-
-Run `revdep_details(, "lcsm")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘cli’
- All declared Imports should be used.
- ```
-
-# LDAShiny
-
-
-
-* Version: 0.9.3
-* GitHub: https://github.com/JavierDeLaHoz/LDAShiny
-* Source code: https://github.com/cran/LDAShiny
-* Date/Publication: 2021-03-29 10:02:12 UTC
-* Number of recursive dependencies: 139
-
-Run `revdep_details(, "LDAShiny")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘beepr’ ‘broom’ ‘chinese.misc’ ‘dplyr’ ‘DT’ ‘highcharter’
- ‘htmlwidgets’ ‘ldatuning’ ‘parallel’ ‘plotly’ ‘purrr’ ‘quanteda’
- ‘shinyalert’ ‘shinyBS’ ‘shinycssloaders’ ‘shinyjs’ ‘shinyWidgets’
- ‘SnowballC’ ‘stringr’ ‘textmineR’ ‘tidyr’ ‘tidytext’ ‘topicmodels’
- All declared Imports should be used.
- ```
-
-# lin.eval
-
-
-
-* Version: 0.1.2
-* GitHub: NA
-* Source code: https://github.com/cran/lin.eval
-* Date/Publication: 2019-02-22 00:00:03 UTC
-* Number of recursive dependencies: 29
-
-Run `revdep_details(, "lin.eval")` for more info
-
-
-
-## In both
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# lolog
-
-
-
-* Version: 1.3
-* GitHub: https://github.com/statnet/lolog
-* Source code: https://github.com/cran/lolog
-* Date/Publication: 2021-07-01 07:50:06 UTC
-* Number of recursive dependencies: 85
-
-Run `revdep_details(, "lolog")` for more info
-
-
-
-## Newly fixed
-
-* R CMD check timed out
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 27.8Mb
- sub-directories of 1Mb or more:
- libs 26.1Mb
- ```
-
-# lspline
-
-
-
-* Version: 1.0-0
-* GitHub: NA
-* Source code: https://github.com/cran/lspline
-* Date/Publication: 2017-04-10 21:15:06 UTC
-* Number of recursive dependencies: 73
-
-Run `revdep_details(, "lspline")` for more info
-
-
-
-## In both
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# lucid
-
-
-
-* Version: 1.8
-* GitHub: https://github.com/kwstat/lucid
-* Source code: https://github.com/cran/lucid
-* Date/Publication: 2021-04-16 13:40:05 UTC
-* Number of recursive dependencies: 73
-
-Run `revdep_details(, "lucid")` for more info
-
-
-
-## In both
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- ...
- --- re-building ‘lucid_examples.Rmd’ using rmarkdown
-
- Quitting from lines 234-258 [jags] (lucid_examples.Rmd)
- Error: processing vignette 'lucid_examples.Rmd' failed with diagnostics:
- could not find function "jags.model"
- --- failed re-building ‘lucid_examples.Rmd’
-
- SUMMARY: processing the following file failed:
- ‘lucid_examples.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘rjags’
- ```
-
-# MagmaClustR
-
-
-
-* Version: 1.1.2
-* GitHub: https://github.com/ArthurLeroy/MagmaClustR
-* Source code: https://github.com/cran/MagmaClustR
-* Date/Publication: 2023-05-23 18:32:03 UTC
-* Number of recursive dependencies: 108
-
-Run `revdep_details(, "MagmaClustR")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘gifski’
- ```
-
-# MapeBay
-
-
-
-* Version: 0.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/MapeBay
-* Date/Publication: 2021-11-15 09:00:09 UTC
-* Number of recursive dependencies: 188
-
-Run `revdep_details(, "MapeBay")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 41.3Mb
- sub-directories of 1Mb or more:
- libs 41.0Mb
- ```
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘RcppParallel’
- All declared Imports should be used.
- ```
-
-* checking for GNU extensions in Makefiles ... NOTE
- ```
- GNU make is a SystemRequirements.
- ```
-
-# mason
-
-
-
-* Version: 0.3.0
-* GitHub: https://github.com/lwjohnst86/mason
-* Source code: https://github.com/cran/mason
-* Date/Publication: 2020-06-04 16:10:05 UTC
-* Number of recursive dependencies: 73
-
-Run `revdep_details(, "mason")` for more info
-
-
-
-## In both
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# metabolomicsR
-
-
-
-* Version: 1.0.0
-* GitHub: https://github.com/XikunHan/metabolomicsR
-* Source code: https://github.com/cran/metabolomicsR
-* Date/Publication: 2022-04-29 07:40:02 UTC
-* Number of recursive dependencies: 180
-
-Run `revdep_details(, "metabolomicsR")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘genuMet’
- ```
-
-# mhurdle
-
-
-
-* Version: 1.3-0
-* GitHub: NA
-* Source code: https://github.com/cran/mhurdle
-* Date/Publication: 2021-12-10 12:20:02 UTC
-* Number of recursive dependencies: 76
-
-Run `revdep_details(, "mhurdle")` for more info
-
-
-
-## In both
-
-* checking package subdirectories ... NOTE
- ```
- Problems with news in ‘NEWS.md’:
- No news entries found.
- ```
-
-# mice
-
-
-
-* Version: 3.15.0
-* GitHub: https://github.com/amices/mice
-* Source code: https://github.com/cran/mice
-* Date/Publication: 2022-11-19 13:00:02 UTC
-* Number of recursive dependencies: 134
-
-Run `revdep_details(, "mice")` for more info
-
-
-
-## Newly fixed
-
-* checking tests ...
- ```
- Running ‘testthat.R’
- ERROR
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- Backtrace:
- ▆
- 1. ├─testthat::expect_warning(K <- parlmice(nhanes, n.core = 2, m = 7)) at test-parlmice.R:32:2
- 2. │ └─testthat:::quasi_capture(...)
- 3. │ ├─testthat (local) .capture(...)
- 4. │ │ └─base::withCallingHandlers(...)
- 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
- 6. └─mice::parlmice(nhanes, n.core = 2, m = 7)
- 7. └─parallel::makeCluster(n.core, type = cl.type)
- 8. └─parallel::makePSOCKcluster(names = spec, ...)
- 9. └─base::serverSocket(port = port)
-
- [ FAIL 5 | WARN 0 | SKIP 0 | PASS 367 ]
- Error: Test failures
- Execution halted
- ```
-
-## In both
-
-* checking C++ specification ... NOTE
- ```
- Specified C++11: please drop specification unless essential
- ```
-
-* checking Rd \usage sections ... NOTE
- ```
- S3 methods shown with full name in documentation object 'cbind.mids':
- ‘cbind.mids’
-
- S3 methods shown with full name in documentation object 'rbind.mids':
- ‘rbind.mids’
-
- The \usage entries for S3 methods should use the \method markup and not
- their full name.
- See chapter ‘Writing R documentation files’ in the ‘Writing R
- Extensions’ manual.
- ```
-
-# microbial
-
-
-
-* Version: 0.0.20
-* GitHub: NA
-* Source code: https://github.com/cran/microbial
-* Date/Publication: 2021-11-01 15:40:02 UTC
-* Number of recursive dependencies: 172
-
-Run `revdep_details(, "microbial")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘testthat’
- All declared Imports should be used.
- ```
-
-# moderndive
-
-
-
-* Version: 0.5.5
-* GitHub: https://github.com/moderndive/moderndive
-* Source code: https://github.com/cran/moderndive
-* Date/Publication: 2022-12-01 22:20:02 UTC
-* Number of recursive dependencies: 107
-
-Run `revdep_details(, "moderndive")` for more info
-
-
-
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 5238 marked UTF-8 strings
- ```
-
-# MSEtool
-
-
-
-* Version: 3.6.2
-* GitHub: https://github.com/Blue-Matter/MSEtool
-* Source code: https://github.com/cran/MSEtool
-* Date/Publication: 2023-03-28 21:20:05 UTC
-* Number of recursive dependencies: 147
-
-Run `revdep_details(, "MSEtool")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 12.9Mb
- sub-directories of 1Mb or more:
- data 4.5Mb
- libs 5.6Mb
- R 1.9Mb
- ```
-
-# multifear
-
-
-
-* Version: 0.1.2
-* GitHub: https://github.com/AngelosPsy/multifear
-* Source code: https://github.com/cran/multifear
-* Date/Publication: 2021-06-01 20:50:02 UTC
-* Number of recursive dependencies: 119
-
-Run `revdep_details(, "multifear")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘ez’
- All declared Imports should be used.
- ```
-
-# multiverse
-
-
-
-* Version: 0.6.1
-* GitHub: https://github.com/MUCollective/multiverse
-* Source code: https://github.com/cran/multiverse
-* Date/Publication: 2022-07-04 13:20:02 UTC
-* Number of recursive dependencies: 120
-
-Run `revdep_details(, "multiverse")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘gifski’
- ```
-
-# NetMix
-
-
-
-* Version: 0.2.0.1
-* GitHub: https://github.com/solivella/NetMix
-* Source code: https://github.com/cran/NetMix
-* Date/Publication: 2022-11-16 16:34:41 UTC
-* Number of recursive dependencies: 59
-
-Run `revdep_details(, "NetMix")` for more info
-
-
-
-## In both
-
-* checking C++ specification ... NOTE
- ```
- Specified C++11: please drop specification unless essential
- ```
-
-# networkDynamic
-
-
-
-* Version: 0.11.3
-* GitHub: NA
-* Source code: https://github.com/cran/networkDynamic
-* Date/Publication: 2023-02-16 08:20:02 UTC
-* Number of recursive dependencies: 39
-
-Run `revdep_details(, "networkDynamic")` for more info
-
-
-
-## In both
-
-* checking tests ...
- ```
- Running ‘activate_tests.R’
- Running ‘age.at_tests.R’
- Running ‘classTests.R’
- Running ‘converter_tests.R’
- Running ‘get_tests.R’
- Running ‘import_tests.R’
- Running ‘network_tests.R’
- Running ‘pid_tests.R’
- Running ‘query_tests.R’
- Running ‘reconcile.activityTests.R’
- ...
- > expect_equal(network.size(net),5)
- > expect_true(is.networkDynamic(net))
- > expect_equal(unlist(get.vertex.activity(net,as.spellList=TRUE)[4:5,1:2]),c(1,1,2,2),check.names=FALSE)
- Error: unlist(get.vertex.activity(net, as.spellList = TRUE)[4:5, 1:2]) (`actual`) not equal to c(1, 1, 2, 2) (`expected`).
-
- `names(actual)` is a character vector ('onset1', 'onset2', 'terminus1', 'terminus2')
- `names(expected)` is absent
- In addition: Warning message:
- Unused arguments (check.names = FALSE)
- Execution halted
- ```
-
-# nlmixr2est
-
-
-
-* Version: 2.1.6
-* GitHub: https://github.com/nlmixr2/nlmixr2est
-* Source code: https://github.com/cran/nlmixr2est
-* Date/Publication: 2023-05-25 23:20:02 UTC
-* Number of recursive dependencies: 197
-
-Run `revdep_details(, "nlmixr2est")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... ERROR
- ```
- Package required but not available: ‘symengine’
-
- See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
- manual.
- ```
-
-# nlshelper
-
-
-
-* Version: 0.2
-* GitHub: NA
-* Source code: https://github.com/cran/nlshelper
-* Date/Publication: 2017-04-03 20:19:13 UTC
-* Number of recursive dependencies: 38
-
-Run `revdep_details(, "nlshelper")` for more info
-
-
-
-## In both
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# oceanic
-
-
-
-* Version: 0.1.6
-* GitHub: NA
-* Source code: https://github.com/cran/oceanic
-* Date/Publication: 2023-05-09 04:20:02 UTC
-* Number of recursive dependencies: 53
-
-Run `revdep_details(, "oceanic")` for more info
-
-
-
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 1242 marked UTF-8 strings
- ```
-
-# openintro
-
-
-
-* Version: 2.4.0
-* GitHub: https://github.com/OpenIntroStat/openintro
-* Source code: https://github.com/cran/openintro
-* Date/Publication: 2022-09-01 02:40:02 UTC
-* Number of recursive dependencies: 93
-
-Run `revdep_details(, "openintro")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 5.1Mb
- sub-directories of 1Mb or more:
- data 4.2Mb
- ```
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 2524 marked UTF-8 strings
- ```
-
-# packDAMipd
-
-
-
-* Version: 0.2.2
-* GitHub: https://github.com/sheejamk/packDAMipd
-* Source code: https://github.com/cran/packDAMipd
-* Date/Publication: 2021-03-03 09:20:14 UTC
-* Number of recursive dependencies: 217
-
-Run `revdep_details(, "packDAMipd")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘flexsurv’ ‘nlme’ ‘tibble’ ‘tidyverse’ ‘tm’
- All declared Imports should be used.
- ```
-
-# photosynthesis
-
-
-
-* Version: 2.1.3
-* GitHub: https://github.com/cdmuir/photosynthesis
-* Source code: https://github.com/cran/photosynthesis
-* Date/Publication: 2023-05-11 21:20:02 UTC
-* Number of recursive dependencies: 143
-
-Run `revdep_details(, "photosynthesis")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 7.2Mb
- sub-directories of 1Mb or more:
- doc 6.1Mb
- ```
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 13 marked UTF-8 strings
- ```
-
-# pixiedust
-
-
-
-* Version: 0.9.1
-* GitHub: https://github.com/nutterb/pixiedust
-* Source code: https://github.com/cran/pixiedust
-* Date/Publication: 2021-01-15 11:50:02 UTC
-* Number of recursive dependencies: 70
-
-Run `revdep_details(, "pixiedust")` for more info
-
-
-
-## In both
-
-* checking Rd files ... NOTE
- ```
- checkRd: (-1) sanitize_latex.Rd:49: Escaped LaTeX specials: \$
- ```
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# pkggraph
-
-
-
-* Version: 0.2.3
-* GitHub: https://github.com/talegari/pkggraph
-* Source code: https://github.com/cran/pkggraph
-* Date/Publication: 2018-11-15 09:50:03 UTC
-* Number of recursive dependencies: 71
-
-Run `revdep_details(, "pkggraph")` for more info
-
-
-
-## In both
-
-* checking package subdirectories ... NOTE
- ```
- Problems with news in ‘NEWS.md’:
- No news entries found.
- ```
-
-# plm
-
-
-
-* Version: 2.6-3
-* GitHub: https://github.com/ycroissant/plm
-* Source code: https://github.com/cran/plm
-* Date/Publication: 2023-04-09 11:40:02 UTC
-* Number of recursive dependencies: 110
-
-Run `revdep_details(, "plm")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 5.7Mb
- sub-directories of 1Mb or more:
- tests 3.1Mb
- ```
-
-# plotly
-
-
-
-* Version: 4.10.1
-* GitHub: https://github.com/plotly/plotly.R
-* Source code: https://github.com/cran/plotly
-* Date/Publication: 2022-11-07 07:30:03 UTC
-* Number of recursive dependencies: 167
-
-Run `revdep_details(, "plotly")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 7.2Mb
- sub-directories of 1Mb or more:
- htmlwidgets 4.0Mb
- ```
-
-# pubh
-
-
-
-* Version: 1.2.7
-* GitHub: https://github.com/josie-athens/pubh
-* Source code: https://github.com/cran/pubh
-* Date/Publication: 2022-04-04 13:50:02 UTC
-* Number of recursive dependencies: 233
-
-Run `revdep_details(, "pubh")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘Hmisc’ ‘sjPlot’
- All declared Imports should be used.
- ```
-
-# qPCRtools
-
-
-
-* Version: 0.2.1
-* GitHub: https://github.com/lixiang117423/qPCRtools
-* Source code: https://github.com/cran/qPCRtools
-* Date/Publication: 2022-08-15 10:30:02 UTC
-* Number of recursive dependencies: 137
-
-Run `revdep_details(, "qPCRtools")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘data.table’ ‘readxl’ ‘reshape2’ ‘sjmisc’ ‘stringr’ ‘xlsx’
- All declared Imports should be used.
- ```
-
-# radiant.data
-
-
-
-* Version: 1.5.6
-* GitHub: https://github.com/radiant-rstats/radiant.data
-* Source code: https://github.com/cran/radiant.data
-* Date/Publication: 2023-04-23 07:00:02 UTC
-* Number of recursive dependencies: 146
-
-Run `revdep_details(, "radiant.data")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘RPostgres’
- ```
-
-# RBesT
-
-
-
-* Version: 1.6-6
-* GitHub: https://github.com/Novartis/RBesT
-* Source code: https://github.com/cran/RBesT
-* Date/Publication: 2023-03-03 18:20:02 UTC
-* Number of recursive dependencies: 131
-
-Run `revdep_details(, "RBesT")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 69.0Mb
- sub-directories of 1Mb or more:
- doc 1.8Mb
- libs 65.8Mb
- ```
-
-* checking for GNU extensions in Makefiles ... NOTE
- ```
- GNU make is a SystemRequirements.
- ```
-
-# rdss
-
-
-
-* Version: 1.0.4
-* GitHub: NA
-* Source code: https://github.com/cran/rdss
-* Date/Publication: 2023-05-02 08:10:03 UTC
-* Number of recursive dependencies: 201
-
-Run `revdep_details(, "rdss")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘DIDmultiplegt’
- ```
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 5 marked UTF-8 strings
- ```
-
-# rfars
-
-
-
-* Version: 0.3.0
-* GitHub: https://github.com/s87jackson/rfars
-* Source code: https://github.com/cran/rfars
-* Date/Publication: 2023-05-05 09:40:02 UTC
-* Number of recursive dependencies: 94
-
-Run `revdep_details(, "rfars")` for more info
-
-
-
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 806 marked UTF-8 strings
- ```
-
-# sand
-
-
-
-* Version: 2.0.0
-* GitHub: https://github.com/kolaczyk/sand
-* Source code: https://github.com/cran/sand
-* Date/Publication: 2020-07-02 07:20:06 UTC
-* Number of recursive dependencies: 155
-
-Run `revdep_details(, "sand")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘networkTomography’
- ```
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 6 marked UTF-8 strings
- ```
-
-# SherlockHolmes
-
-
-
-* Version: 1.0.1
-* GitHub: NA
-* Source code: https://github.com/cran/SherlockHolmes
-* Date/Publication: 2023-03-28 14:40:06 UTC
-* Number of recursive dependencies: 108
-
-Run `revdep_details(, "SherlockHolmes")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 6.4Mb
- sub-directories of 1Mb or more:
- doc 1.7Mb
- extdata 4.2Mb
- ```
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 14 marked UTF-8 strings
- ```
-
-# simts
-
-
-
-* Version: 0.2.1
-* GitHub: https://github.com/SMAC-Group/simts
-* Source code: https://github.com/cran/simts
-* Date/Publication: 2022-09-03 17:00:02 UTC
-* Number of recursive dependencies: 55
-
-Run `revdep_details(, "simts")` for more info
-
-
-
-## In both
-
-* checking C++ specification ... NOTE
- ```
- Specified C++11: please drop specification unless essential
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 32.3Mb
- sub-directories of 1Mb or more:
- doc 1.5Mb
- libs 29.9Mb
- ```
-
-# skedastic
-
-
-
-* Version: 2.0.1
-* GitHub: https://github.com/tjfarrar/skedastic
-* Source code: https://github.com/cran/skedastic
-* Date/Publication: 2022-11-06 07:40:02 UTC
-* Number of recursive dependencies: 200
-
-Run `revdep_details(, "skedastic")` for more info
-
-
-
-## In both
-
-* checking Rd cross-references ... NOTE
- ```
- Packages unavailable to check Rd xrefs: ‘cmna’, ‘lmboot’
- ```
-
-# sparklyr
-
-
-
-* Version: 1.8.1
-* GitHub: https://github.com/sparklyr/sparklyr
-* Source code: https://github.com/cran/sparklyr
-* Date/Publication: 2023-03-22 13:40:02 UTC
-* Number of recursive dependencies: 116
-
-Run `revdep_details(, "sparklyr")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 6.3Mb
- sub-directories of 1Mb or more:
- java 3.4Mb
- R 1.5Mb
- ```
-
-# spqdep
-
-
-
-* Version: 0.1.2
-* GitHub: NA
-* Source code: https://github.com/cran/spqdep
-* Date/Publication: 2022-03-28 16:20:02 UTC
-* Number of recursive dependencies: 114
-
-Run `revdep_details(, "spqdep")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘lwgeom’ ‘rgeoda’
- All declared Imports should be used.
- ```
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 4 marked UTF-8 strings
- ```
-
-# stabiliser
-
-
-
-* Version: 1.0.6
-* GitHub: NA
-* Source code: https://github.com/cran/stabiliser
-* Date/Publication: 2023-05-17 11:00:05 UTC
-* Number of recursive dependencies: 149
-
-Run `revdep_details(, "stabiliser")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘knitr’
- All declared Imports should be used.
- ```
-
-# stargazer
-
-
-
-* Version: 5.2.3
-* GitHub: NA
-* Source code: https://github.com/cran/stargazer
-* Date/Publication: 2022-03-04 11:50:02 UTC
-* Number of recursive dependencies: 0
-
-Run `revdep_details(, "stargazer")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Packages which this enhances but not available for checking:
- 'brglm', 'dynlm', 'eha', 'erer', 'fGarch', 'gmm'
- ```
-
-# statnet
-
-
-
-* Version: 2019.6
-* GitHub: https://github.com/statnet/statnet
-* Source code: https://github.com/cran/statnet
-* Date/Publication: 2019-06-14 08:00:06 UTC
-* Number of recursive dependencies: 98
-
-Run `revdep_details(, "statnet")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘networksis’
- ```
-
-* checking startup messages can be suppressed ... NOTE
- ```
- unable to reach CRAN
-
- It looks like this package (or a package it requires) has a startup
- message which cannot be suppressed: see ?packageStartupMessage.
- ```
-
-# statnet.common
-
-
-
-* Version: 4.9.0
-* GitHub: https://github.com/statnet/statnet.common
-* Source code: https://github.com/cran/statnet.common
-* Date/Publication: 2023-05-24 16:10:02 UTC
-* Number of recursive dependencies: 20
-
-Run `revdep_details(, "statnet.common")` for more info
-
-
-
-## In both
-
-* checking R code for possible problems ... NOTE
- ```
- Found the following possibly unsafe calls:
- File ‘statnet.common/R/control.utilities.R’:
- unlockBinding("snctrl", environment(snctrl))
- unlockBinding("snctrl", environment(update_my_snctrl))
- ```
-
-# statnetWeb
-
-
-
-* Version: 0.5.6
-* GitHub: NA
-* Source code: https://github.com/cran/statnetWeb
-* Date/Publication: 2020-08-05 18:00:03 UTC
-* Number of recursive dependencies: 67
-
-Run `revdep_details(, "statnetWeb")` for more info
-
-
-
-## In both
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# StroupGLMM
-
-
-
-* Version: 0.1.0
-* GitHub: https://github.com/MYaseen208/StroupGLMM
-* Source code: https://github.com/cran/StroupGLMM
-* Date/Publication: 2016-04-19 01:00:56
-* Number of recursive dependencies: 92
-
-Run `revdep_details(, "StroupGLMM")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘broom’ ‘car’ ‘lmerTest’ ‘pbkrtest’
- All declared Imports should be used.
- ```
-
-# survminer
-
-
-
-* Version: 0.4.9
-* GitHub: https://github.com/kassambara/survminer
-* Source code: https://github.com/cran/survminer
-* Date/Publication: 2021-03-09 09:50:03 UTC
-* Number of recursive dependencies: 129
-
-Run `revdep_details(, "survminer")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 6.0Mb
- sub-directories of 1Mb or more:
- doc 5.5Mb
- ```
-
-# SWMPrExtension
-
-
-
-* Version: 2.2.4.2
-* GitHub: https://github.com/NOAA-OCM/SWMPrExtension
-* Source code: https://github.com/cran/SWMPrExtension
-* Date/Publication: 2023-04-20 22:12:34 UTC
-* Number of recursive dependencies: 147
-
-Run `revdep_details(, "SWMPrExtension")` for more info
-
-
-
-## In both
-
-* checking whether package ‘SWMPrExtension’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/srv/scratch/z3528859/github/statnet/ergm/revdep/checks/SWMPrExtension/new/SWMPrExtension.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘SWMPrExtension’ ...
-** package ‘SWMPrExtension’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/srv/scratch/z3528859/R-4.3.0/library/magick/libs/magick.so':
- /apps/z_install_tree/linux-rocky8-ivybridge/gcc-12.2.0/glib-2.74.1-jrm3i3hfvjbyqoo4hipwrurprh3uteor/lib/libgobject-2.0.so.0: undefined symbol: g_uri_ref
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘SWMPrExtension’
-* removing ‘/srv/scratch/z3528859/github/statnet/ergm/revdep/checks/SWMPrExtension/new/SWMPrExtension.Rcheck/SWMPrExtension’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘SWMPrExtension’ ...
-** package ‘SWMPrExtension’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/srv/scratch/z3528859/R-4.3.0/library/magick/libs/magick.so':
- /apps/z_install_tree/linux-rocky8-ivybridge/gcc-12.2.0/glib-2.74.1-jrm3i3hfvjbyqoo4hipwrurprh3uteor/lib/libgobject-2.0.so.0: undefined symbol: g_uri_ref
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘SWMPrExtension’
-* removing ‘/srv/scratch/z3528859/github/statnet/ergm/revdep/checks/SWMPrExtension/old/SWMPrExtension.Rcheck/SWMPrExtension’
-
-
-```
-# SynDI
-
-
-
-* Version: 0.1.0
-* GitHub: https://github.com/umich-biostatistics/SynDI
-* Source code: https://github.com/cran/SynDI
-* Date/Publication: 2022-05-25 07:50:05 UTC
-* Number of recursive dependencies: 66
-
-Run `revdep_details(, "SynDI")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘arm’ ‘boot’ ‘broom’ ‘knitr’ ‘MASS’ ‘mvtnorm’ ‘randomForest’
- ‘StackImpute’
- All declared Imports should be used.
- ```
-
-# takos
-
-
-
-* Version: 0.2.0
-* GitHub: https://github.com/sere3s/takos
-* Source code: https://github.com/cran/takos
-* Date/Publication: 2020-10-19 09:50:02 UTC
-* Number of recursive dependencies: 45
-
-Run `revdep_details(, "takos")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘devEMF’ ‘MASS’ ‘segmented’ ‘smoother’ ‘tools’
- All declared Imports should be used.
- ```
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# tergm
-
-
-
-* Version: 4.1.1
-* GitHub: https://github.com/statnet/tergm
-* Source code: https://github.com/cran/tergm
-* Date/Publication: 2022-11-08 14:10:02 UTC
-* Number of recursive dependencies: 79
-
-Run `revdep_details(, "tergm")` for more info
-
-
-
-## Newly broken
-
-* checking tests ...
- ```
- Running ‘degree.mean.age.R’
- Running ‘dynamic_EGMME.R’
- Running ‘dynamic_MLE_blockdiag.bipartite.R’
- Running ‘dynamic_MLE_blockdiag.R’
- Running ‘sim_gf_sum.R’
- Running ‘simulate_networkDynamic.R’
- Running ‘tergm_offset_tests.R’
- Running ‘tergm_parallel.R’
- Running ‘testthat.R’
- ERROR
- ...
- 5. └─base::replicate(...)
- 6. └─base::sapply(...)
- 7. └─base::lapply(X = X, FUN = FUN, ...)
- 8. └─tergm (local) FUN(X[[i]], ...)
- 9. └─tergm::tergm_MCMC_sample(...)
- 10. └─tergm::tergm_MCMC_slave(state, eta.comb, control, verbose)
-
- [ FAIL 1 | WARN 29 | SKIP 0 | PASS 3598 ]
- Error: Test failures
- Execution halted
- ```
-
-# texPreview
-
-
-
-* Version: 2.0.0
-* GitHub: https://github.com/yonicd/texPreview
-* Source code: https://github.com/cran/texPreview
-* Date/Publication: 2022-03-31 07:30:02 UTC
-* Number of recursive dependencies: 94
-
-Run `revdep_details(, "texPreview")` for more info
-
-
-
-## In both
-
-* checking tests ...
- ```
- Running ‘testthat.R’/srv/scratch/z3528859/R-4.3.0/bin/BATCH: line 60: 3447639 Aborted ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1
-
- ERROR
- Running the tests in ‘tests/testthat.R’ failed.
- Complete output:
- > library(testthat)
- > library(texPreview)
- > test_check("texPreview")
- malloc(): invalid size (unsorted)
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- sh: line 1: 3448038 Aborted '/srv/scratch/z3528859/R-4.3.0/bin/R' --vanilla --no-echo > '/scratch/pbs.4432494.kman.restech.unsw.edu.au/RtmphyRO03/file349cda3f54fd6d' 2>&1 < '/scratch/pbs.4432494.kman.restech.unsw.edu.au/RtmphyRO03/file349cda2849b6e1'
- --- re-building ‘classes.Rmd’ using rmarkdown
- malloc(): invalid size (unsorted)
- sh: line 1: 3448078 Aborted '/srv/scratch/z3528859/R-4.3.0/bin/R' --vanilla --no-echo > '/scratch/pbs.4432494.kman.restech.unsw.edu.au/RtmphyRO03/file349cda5d32daf4' 2>&1 < '/scratch/pbs.4432494.kman.restech.unsw.edu.au/RtmphyRO03/file349cda303d7d4'
- --- re-building ‘engine.Rmd’ using rmarkdown
- malloc(): invalid size (unsorted)
- sh: line 1: 3448116 Aborted '/srv/scratch/z3528859/R-4.3.0/bin/R' --vanilla --no-echo > '/scratch/pbs.4432494.kman.restech.unsw.edu.au/RtmphyRO03/file349cda3056d66f' 2>&1 < '/scratch/pbs.4432494.kman.restech.unsw.edu.au/RtmphyRO03/file349cda4fb532c'
- --- re-building ‘kable.Rmd’ using rmarkdown
- malloc(): invalid size (unsorted)
- ...
- --- finished re-building ‘tex_packages.Rmd’
-
- sh: line 1: 3448273 Aborted '/srv/scratch/z3528859/R-4.3.0/bin/R' --vanilla --no-echo > '/scratch/pbs.4432494.kman.restech.unsw.edu.au/RtmphyRO03/file349cda6bf6b908' 2>&1 < '/scratch/pbs.4432494.kman.restech.unsw.edu.au/RtmphyRO03/file349cdae12245e'
- --- re-building ‘tikz.Rmd’ using rmarkdown
- malloc(): invalid size (unsorted)
- SUMMARY: processing the following files failed:
- ‘classes.Rmd’ ‘engine.Rmd’ ‘kable.Rmd’ ‘rmarkdown.Rmd’ ‘tikz.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘pdftools’
- ```
-
-# texreg
-
-
-
-* Version: 1.38.6
-* GitHub: https://github.com/leifeld/texreg
-* Source code: https://github.com/cran/texreg
-* Date/Publication: 2022-04-06 22:00:02 UTC
-* Number of recursive dependencies: 86
-
-Run `revdep_details(, "texreg")` for more info
-
-
-
-## In both
-
* checking package dependencies ... NOTE
```
Packages which this enhances but not available for checking:
- 'alpaca', 'brglm', 'dynlm', 'eha', 'erer', 'fGarch', 'gamlss.inf',
- 'gmm', 'metaSEM', 'mnlogit', 'oglmx', 'pglm', 'simex', 'spatialreg',
- 'Zelig'
- ```
-
-* checking Rd cross-references ... NOTE
- ```
- Packages unavailable to check Rd xrefs: ‘spatialreg’, ‘eha’, ‘brglm’, ‘dynlm’, ‘fGarch’, ‘alpaca’, ‘gamlss.inf’, ‘gmm’, ‘erer’, ‘oglmx’, ‘pglm’, ‘simex’, ‘metaSEM’
- ```
-
-# tidybayes
-
-
-
-* Version: 3.0.4
-* GitHub: https://github.com/mjskay/tidybayes
-* Source code: https://github.com/cran/tidybayes
-* Date/Publication: 2023-03-14 04:30:02 UTC
-* Number of recursive dependencies: 199
-
-Run `revdep_details(, "tidybayes")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Packages suggested but not available for checking:
- 'runjags', 'rjags', 'jagsUI', 'gifski'
- ```
-
-* checking Rd cross-references ... NOTE
- ```
- Packages unavailable to check Rd xrefs: ‘runjags’, ‘rjags’, ‘jagsUI’
- ```
-
-# tidycat
-
-
-
-* Version: 0.1.2
-* GitHub: https://github.com/guyabel/tidycat
-* Source code: https://github.com/cran/tidycat
-* Date/Publication: 2021-08-02 04:20:01 UTC
-* Number of recursive dependencies: 71
-
-Run `revdep_details(, "tidycat")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘tidyr’
- All declared Imports should be used.
- ```
-
-# tidyquant
-
-
-
-* Version: 1.0.7
-* GitHub: https://github.com/business-science/tidyquant
-* Source code: https://github.com/cran/tidyquant
-* Date/Publication: 2023-03-31 20:40:02 UTC
-* Number of recursive dependencies: 178
-
-Run `revdep_details(, "tidyquant")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘tidyverse’
- All declared Imports should be used.
- ```
-
-# timetk
-
-
-
-* Version: 2.8.3
-* GitHub: https://github.com/business-science/timetk
-* Source code: https://github.com/cran/timetk
-* Date/Publication: 2023-03-30 14:20:05 UTC
-* Number of recursive dependencies: 177
-
-Run `revdep_details(, "timetk")` for more info
-
-
-
-## In both
-
-* checking examples ... ERROR
- ```
- Running examples in ‘timetk-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: parse_date2
- > ### Title: Fast, flexible date and datetime parsing
- > ### Aliases: parse_date2 parse_datetime2
- >
- > ### ** Examples
- >
- >
- ...
- [1] "2011-01-01"
- > parse_date2("2011 June 3rd")
- [1] "2011-06-03"
- >
- > # Fast datetime parsing
- > parse_datetime2("2011")
- Error in C_force_tz(to_posixct(time), tz, roll_dst) :
- CCTZ: Unrecognized timezone of the input vector: ":/etc/localtime"
- Calls: parse_datetime2 ... -> .force_tz -> from_posixct -> C_force_tz
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... ERROR
- ```
- Error(s) in re-building vignettes:
- ...
- --- re-building ‘TK04_Plotting_Time_Series.Rmd’ using rmarkdown
- --- finished re-building ‘TK04_Plotting_Time_Series.Rmd’
-
- --- re-building ‘TK07_Time_Series_Data_Wrangling.Rmd’ using rmarkdown
-
- Quitting from lines 175-181 [unnamed-chunk-10] (TK07_Time_Series_Data_Wrangling.Rmd)
- Error: processing vignette 'TK07_Time_Series_Data_Wrangling.Rmd' failed with diagnostics:
- ℹ In argument: `date %>% between_time("start", first(date) %+time% "1
- ...
- ℹ In group 1: `symbol = "AMZN"`.
- Caused by error in `C_time_add()`:
- ! CCTZ: Invalid timezone of the input vector: ""
- --- failed re-building ‘TK07_Time_Series_Data_Wrangling.Rmd’
-
- SUMMARY: processing the following file failed:
- ‘TK07_Time_Series_Data_Wrangling.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 2750 marked UTF-8 strings
- ```
-
-# tipsae
-
-
-
-* Version: 0.0.13
-* GitHub: NA
-* Source code: https://github.com/cran/tipsae
-* Date/Publication: 2023-04-21 16:00:03 UTC
-* Number of recursive dependencies: 156
-
-Run `revdep_details(, "tipsae")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 66.3Mb
- sub-directories of 1Mb or more:
- doc 1.9Mb
- libs 62.3Mb
- ```
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘sp’
- All declared Imports should be used.
- ```
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 1 marked UTF-8 string
+ 'alpaca', 'bife', 'brglm', 'brms', 'dynlm', 'eha', 'erer', 'feisr',
+ 'fGarch', 'forecast', 'gamlss', 'gamlss.inf', 'glmmTMB', 'gnm',
+ 'h2o', 'logitr', 'lqmm', 'metaSEM', 'mhurdle', 'miceadds', 'mnlogit',
+ 'MuMIn', 'oglmx', 'pglm', 'rms', 'simex', 'truncreg', 'Zelig'
```
-* checking for GNU extensions in Makefiles ... NOTE
- ```
- GNU make is a SystemRequirements.
- ```
-
-# TSS.RESTREND
-
-
-
-* Version: 0.3.1
-* GitHub: NA
-* Source code: https://github.com/cran/TSS.RESTREND
-* Date/Publication: 2020-08-02 20:10:02 UTC
-* Number of recursive dependencies: 112
-
-Run `revdep_details(, "TSS.RESTREND")` for more info
-
-
-
-## In both
-
* checking Rd cross-references ... NOTE
```
- Package unavailable to check Rd xrefs: ‘gimms’
- ```
-
-# valr
-
-
-
-* Version: 0.6.8
-* GitHub: https://github.com/rnabioco/valr
-* Source code: https://github.com/cran/valr
-* Date/Publication: 2023-05-16 14:10:02 UTC
-* Number of recursive dependencies: 173
-
-Run `revdep_details(, "valr")` for more info
-
-
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 14.2Mb
- sub-directories of 1Mb or more:
- libs 13.0Mb
- ```
-
-# webSDM
-
-
-
-* Version: 1.1-3
-* GitHub: https://github.com/giopogg/webSDM
-* Source code: https://github.com/cran/webSDM
-* Date/Publication: 2023-03-14 13:50:02 UTC
-* Number of recursive dependencies: 190
-
-Run `revdep_details(, "webSDM")` for more info
-
-
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘Matrix’
- All declared Imports should be used.
- ```
-
-# whippr
-
-
-
-* Version: 0.1.2
-* GitHub: https://github.com/fmmattioni/whippr
-* Source code: https://github.com/cran/whippr
-* Date/Publication: 2022-09-09 07:00:02 UTC
-* Number of recursive dependencies: 135
-
-Run `revdep_details(, "whippr")` for more info
-
-
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘anomalize’
+ Packages unavailable to check Rd xrefs: ‘h2o’, ‘eha’, ‘MuMIn’, ‘bife’, ‘brglm’, ‘brms’, ‘dynlm’, ‘forecast’, ‘fGarch’, ‘alpaca’, ‘feisr’, ‘gamlss’, ‘gamlss.inf’, ‘miceadds’, ‘glmmTMB’, ‘gnm’, ‘lqmm’, ‘rms’, ‘erer’, ‘mhurdle’, ‘oglmx’, ‘pglm’, ‘simex’, ‘truncreg’, ‘metaSEM’
```