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Hi, I'm trying to reproduce your contamination detection in Trichonephila clavipes spider genome (MWRG01, assembly GCA_002102615.1_NepCla1.0).
I use the following command:
~/Downloads/conterminator/build/bin/conterminator dna GCA_002102615.1_NepCla1.0_genomic.fna MWRG01 spider_result tmp --ncbi-tax-dump ../Aquifers/DB-LINKS/taxonomy
I always get segfault at the extractframes stage, although at a slightly different time, judging by the amount of World Size: 64 dbSize: 0 strings in the log (compare log.txt and log1.txt attached).
I use a self-compiled version (e5d7579, downloaded from github today) and the last NCBI's taxdump. Id mapping file attached. github-issue.tar.gz
Hi, I'm trying to reproduce your contamination detection in Trichonephila clavipes spider genome (MWRG01, assembly GCA_002102615.1_NepCla1.0).
I use the following command:
I always get segfault at the
extractframes
stage, although at a slightly different time, judging by the amount ofWorld Size: 64 dbSize: 0
strings in the log (comparelog.txt
andlog1.txt
attached).I use a self-compiled version (e5d7579, downloaded from github today) and the last NCBI's taxdump. Id mapping file attached.
github-issue.tar.gz
Thanks
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