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The result of "$taxidmapping" is: BL_ORD_ID:0 0 and etc. #22

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maruiqi0710 opened this issue Sep 7, 2023 · 0 comments
Open

The result of "$taxidmapping" is: BL_ORD_ID:0 0 and etc. #22

maruiqi0710 opened this issue Sep 7, 2023 · 0 comments

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@maruiqi0710
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maruiqi0710 commented Sep 7, 2023

I donwload nt from ftp.ncbi.nlm.nih.gov:/blast/db/FASTA/nt.gz.
Then, make db using:

makeblastdb -in ./nt -dbtype nucl -out ./nt_blast_db

Then, run

"$blastdbcmd" -db "$db" -entry all -outfmt "%a %T" > "$taxidmapping"

The result of "$taxidmapping" is:

BL_ORD_ID:0 0
BL_ORD_ID:1 0
BL_ORD_ID:2 0
BL_ORD_ID:3 0
………………

What's wrong?

@maruiqi0710 maruiqi0710 changed the title the result of "$taxidmapping" is: BL_ORD_ID:0 0 and etc. The result of "$taxidmapping" is: BL_ORD_ID:0 0 and etc. Sep 7, 2023
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