diff --git a/data/easycomplexsearch.sh b/data/easycomplexsearch.sh index 4e7d7b07..20505c9a 100644 --- a/data/easycomplexsearch.sh +++ b/data/easycomplexsearch.sh @@ -39,8 +39,8 @@ if [ "$PREFMODE" != "EXHAUSTIVE" ]; then || fail "Expandcomplex died" fi if notExists "${TMP_PATH}/result_expand_aligned.dbtype"; then - echo "$MMSEQS" $COMPLEX_ALIGNMENT_ALGO "${QUERY}" "${TARGET}" "${TMP_PATH}/result_expand_pref" "${TMP_PATH}/result_expand_aligned" ${COMPLEX_ALIGN_PAR}; - "$MMSEQS" $COMPLEX_ALIGNMENT_ALGO "${QUERY}" "${TARGET}" "${TMP_PATH}/result_expand_pref" "${TMP_PATH}/result_expand_aligned" ${COMPLEX_ALIGN_PAR} \ + echo "$MMSEQS" $COMPLEX_ALIGNMENT_ALGO "${QUERY}" "${TARGET}" "${TMP_PATH}/result_expand_pref" "${TMP_PATH}/result_expand_aligned" "${COMPLEX_ALIGN_PAR}"; + "$MMSEQS" $COMPLEX_ALIGNMENT_ALGO "${QUERY}" "${TARGET}" "${TMP_PATH}/result_expand_pref" "${TMP_PATH}/result_expand_aligned" "${COMPLEX_ALIGN_PAR}" \ || fail "something died" fi RESULT="${TMP_PATH}/result_expand_aligned" @@ -65,7 +65,7 @@ if [ -n "${REMOVE_TMP}" ]; then # shellcheck disable=SC2086 "$MMSEQS" rmdb "${TMP_PATH}/result" ${VERBOSITY} if [ "$PREFMODE" -ne "EXHAUSTIVE" ]; then - "$MMSEQS" rmdb "${TMP_PATH}/result_expand_aligned" ${VERBOSITY} + "$MMSEQS" rmdb "${TMP_PATH}/result_expand_aligned" "${VERBOSITY}" fi # shellcheck disable=SC2086 "$MMSEQS" rmdb "${TMP_PATH}/complex_result" ${VERBOSITY}