From 3d9011c3c25d6db770d56787c7d35d84e6692135 Mon Sep 17 00:00:00 2001 From: Daniel DW Kim Date: Mon, 13 Jan 2025 17:07:29 +0900 Subject: [PATCH] Add badges --- README.md | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 39b0474..126a6a3 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,8 @@ # Unicore +[![Build](https://img.shields.io/github/actions/workflow/status/steineggerlab/unicore/ci.yml)](https://github.com/steineggerlab/unicore/actions) +[![License](https://img.shields.io/github/license/steineggerlab/unicore)](https://github.com/steineggerlab/unicore/blob/main/LICENSE) +[![Bioconda](https://img.shields.io/conda/dn/bioconda/unicore?logo=anaconda)](https://anaconda.org/bioconda/unicore) + Unicore is a method for scalable and accurate phylogenetic reconstruction with structural core genes using Foldseek and ProstT5, universally applicable to any given set of taxa. ## Publications @@ -35,7 +39,7 @@ conda install -c conda-forge pytorch-gpu ### GPU acceleration with Foldseek-ProstT5 (beta) > Note. This feature is under development and may not work in some environments. We will provide an update after the stable release of Foldseek-ProstT5. -Foldseek provides a GPU-compatible static binary for ProstT5 prediction (requires Linux with AVX2 support, glibc>=2.29, and nvidia-driver>=525.60.13)
+Foldseek provides a GPU-compatible static binary for ProstT5 prediction (requires Linux with AVX2 support, `glibc` ≥2.29, and `nvidia-driver` ≥525.60.13)
To use it, please install it by running the following command: ``` wget https://mmseqs.com/foldseek/foldseek-linux-gpu.tar.gz; tar xvfz foldseek-linux-gpu.tar.gz; export PATH=$(pwd)/foldseek/bin/:$PATH