reading_list.md

Reading list / reference for project background

• Digital pathogen surveillance
• Public Health Genomics, E. coli example
• Antibiotic-resistance predictions in-silico
• Pan-genome review
• [SuperPhy](link soon, manuscript is in the repo)
• Panseq
• Mithril presentation
• Mithril tutorial
• Coffeescript reference
• Blazegraph wiki
• GFVO
• Biological ontologies (OBO)