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Error while running segmentation code "# bash docker run -it --rm --gpus all -v <-your-path>/BraTS_Format/SYSU0032/:/app/data/ -v <-your-path>/Results:/app/results/ sustechmedical/brain_tumor_segmentation python runner.py" #1

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biotech98 opened this issue Jun 7, 2023 · 0 comments

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@biotech98
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I used the given dataset and got stuck in last step. Please help me in sorting out the error. I am not aware why this same error is popping up again and again.

error:

Traceback (most recent call last):
File "runner.py", line 48, in
case_identifiers = [i[:-len("_t1.nii.gz")] for i in subfiles(folder, suffix="_t1.nii.gz", join=False)]
File "/opt/conda/lib/python3.8/site-packages/batchgenerators/utilities/file_and_folder_operations.py", line 24, in subfiles
res = [l(folder, i) for i in os.listdir(folder) if os.path.isfile(os.path.join(folder, i))
PermissionError: [Errno 13] Permission denied: '/app/data/'

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