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Biodivine BMA Data

Rust library for working with models in BMA format.

Work in progress.

This library should offer functionality for:

  • Parsing BMA models from JSON and XML. We aim to support the newest BMA JSON format, but also try to handle older JSON and XML variants.
  • Creating new BMA models and exporting them into the latest BMA JSON format.
  • Converting BMA models into RegulatoryGraph and BooleanNetwork instances of lib-param-bn.
    • This includes processing BMA real-number update expressions into BDD-based counterparts.
  • Converting BooleanNetwork instances into BMA models.
  • Translating between BMA and AEON model formats.