README.md

CNest - The Copy Number Estimator

Docker Implementation for CNest - Detection and Genome Wide Association Testing
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Table of Contents

• About the Project
  • Built With
• Getting Started
  • Prerequisites
  • Installation
• Usage
• License
• Contact
• Acknowledgements

About The Project

These methods allow large scale CNV detection from very large WGS and WES datasets and generate all the required information for proper genome wide association testing for copy number differences.

Built With

• Docker

Getting Started

To get a local copy up and running follow these simple steps.

Prerequisites

Docker

Installation

1. Clone the repo

git clone https://github.com/tf2/CNest.git

2. Build the docker image

docker build --tag cnv:1.0 .

Usage

For more examples, please refer to the Documentation

License

Distributed under the MIT License. See LICENSE for more information.

Contact

Tomas William Fitzgerald - @tomaswfitz - [email protected]

Project Link: https://github.com/tf2/CNest

Acknowledgements

• Ewan Birney - @ewanbirney
• Shimin Shuai
• Beri Shifaw