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Failure to load dahlin18 data #24

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sgmccalla opened this issue Jun 23, 2021 · 0 comments
Open

Failure to load dahlin18 data #24

sgmccalla opened this issue Jun 23, 2021 · 0 comments

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@sgmccalla
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When I try to load the Dahlin et al 2018 data, I receive the following error. I have tried both updating and downgrading scanpy and anndata, but still receive the same error. Is there a sc.read parameter I am failing to use? I have tried using both 'sc.read' and 'sc.read_h5ad' but receive the same error.

`adata = sc.read('scanpy_processed_matrix_both_no_cc.h5ad')
Traceback (most recent call last):
File "", line 1, in
File "/mnt/ws/home/smccalla/anaconda3/envs/scanpy/lib/python3.6/site-packages/scanpy/readwrite.py", line 78, in read
backup_url=backup_url, cache=cache, **kwargs)
File "/mnt/ws/home/smccalla/anaconda3/envs/scanpy/lib/python3.6/site-packages/scanpy/readwrite.py", line 435, in _read
return read_h5ad(filename, backed=backed)
File "/mnt/ws/home/smccalla/anaconda3/envs/scanpy/lib/python3.6/site-packages/anndata/_io/h5ad.py", line 437, in read_h5ad
return AnnData(**d)
TypeError: init() got an unexpected keyword argument 'data_graph_distance_local_csr_data'

adata = sc.read_h5ad('scanpy_processed_matrix_both_no_cc.h5ad')
Traceback (most recent call last):
File "", line 1, in
File "/mnt/ws/home/smccalla/anaconda3/envs/scanpy/lib/python3.6/site-packages/anndata/_io/h5ad.py", line 437, in read_h5ad
return AnnData(**d)
TypeError: init() got an unexpected keyword argument 'data_graph_distance_local_csr_data'`

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