diff --git a/_config.yml b/_config.yml index b682d1b..3720074 100644 --- a/_config.yml +++ b/_config.yml @@ -18,7 +18,7 @@ # You can create any custom variable you would like, and they will be accessible # in the templates via {{ site.myvariable }}. -title: TIMS Group +title: TIMS subtitle: Terminology Infrastructure Management Services Group email: shahim@essaid.com description: >- # this means to ignore newlines until "baseurl:" diff --git a/_pages/projects.md b/_pages/projects.md index 6febc63..04efb58 100644 --- a/_pages/projects.md +++ b/_pages/projects.md @@ -7,32 +7,32 @@ permalink: /projects/ TIMS hosts a FHIR server that provides a unique set of ontologies, terminologies, with unique features such as text search and SSSOM-formatted mappings. -- http://fhir.terminology-services.com -- http://20.3.198.176:8080/ (mirror) +- [http://fhir.terminology-services.com](http://fhir.terminology-services.com]) +- [http://20.3.198.176:8080/](http://20.3.198.176:8080/) (mirror) - [More information](/terminology-server/) ### SSSOM SSSOM is a non-TIMS project, but TIMS contributes to this project by enabling it to export FHIR ConceptMap JSON resources with SSSOM extensions. -https://github.com/mapping-commons/sssom-py/ +[https://github.com/mapping-commons/sssom-py/](https://github.com/mapping-commons/sssom-py/) ### OWL-on-FHIR Python-based non-minimalistic OWL to FHIR converter. -https://github.com/HOT-Ecosystem/owl-on-fhir +[https://github.com/HOT-Ecosystem/owl-on-fhir](https://github.com/HOT-Ecosystem/owl-on-fhir) ### OMOP2OWL-vocab Convert OMOP vocab into OWL and SemanticSQL. -https://github.com/HOT-Ecosystem/omop2owl-vocab +[https://github.com/HOT-Ecosystem/omop2owl-vocab](https://github.com/HOT-Ecosystem/omop2owl-vocab) ### OMOP2FHIR-vocab Convert OMOP vocab to FHIR. -https://github.com/HOT-Ecosystem/omop2fhir-vocab +[https://github.com/HOT-Ecosystem/omop2fhir-vocab](https://github.com/HOT-Ecosystem/omop2fhir-vocab) ### TimsUI A minimalistic web UI for the TIMS terminology server. -https://github.com/HOT-Ecosystem/TimsUI +[https://github.com/HOT-Ecosystem/TimsUI](https://github.com/HOT-Ecosystem/TimsUI) diff --git a/_pages/team.md b/_pages/team.md index 018c8b2..905a2a0 100644 --- a/_pages/team.md +++ b/_pages/team.md @@ -6,7 +6,9 @@ permalink: /team/ Director: Melissa Haendel Director: Chris Chute Project Management: Lisa Eskenazi -Development: Shahim Essaid -Development: Joe Flack -Development: Sigfried Gold -Development: Stephanie Hong +Development: Shahim Essaid +Development: Joe Flack +Contributor: Sigfried Gold +Contributor: Stephanie Hong +Contributor: Tim Putman +Contributor: Chris Roeder diff --git a/_pages/terminology-server.md b/_pages/terminology-server.md index dbe0a99..ffd351c 100644 --- a/_pages/terminology-server.md +++ b/_pages/terminology-server.md @@ -6,8 +6,8 @@ permalink: /terminology-server/ TIMS hosts a FHIR server that provides a unique set of ontologies, terminologies, with unique features such as text search and SSSOM-formatted mappings. -- http://fhir.terminology-services.com -- http://20.3.198.176:8080/ (mirror) +- [http://fhir.terminology-services.com](http://fhir.terminology-services.com) +- [http://20.3.198.176:8080/](http://20.3.198.176:8080/) (mirror) ### Notable features [//]: # (TODO: need to clarify this list) @@ -24,7 +24,7 @@ The TIMS server has a few unique features, some of which are not available on an - [SSSOM](https://mapping-commons.github.io/sssom/home/) extensions for ConceptMap resources ### Terminology content -#### CodeSystems +**CodeSystems** [//]: # (TODO: need to clarify this list) TIMS hosts several popular biomedical terminologies, but is unique in that it offers several biomedical ontologies in the FHIR CodeSystem format. @@ -35,10 +35,13 @@ the FHIR CodeSystem format. * HPO * CompLoinc * OMOP vocabularies -* And more on the way +* More on the way... -#### ConceptMap -Many of the terminologies and ontologies for which CodeSystems are available also +**ConceptMap** +Many of the terminologies and ontologies also contain mappings to other terminologies/ontologies, and are represented +as FHIR ConceptMap resources. TIMS uniquely includes additional fields from the [SSSOM]( +https://mapping-commons.github.io/sssom/home/) extensions (Simple Standard fo Sharing Ontology Mappings) standard, +embedded as FHIR extensions. [//]: # (#### ValueSet)