diff --git a/bin/sparql/mondo_labels.rq b/bin/sparql/mondo_labels.rq index 265c7e42..bb7cdd9e 100644 --- a/bin/sparql/mondo_labels.rq +++ b/bin/sparql/mondo_labels.rq @@ -14,7 +14,7 @@ WHERE { oboInOwl:hasBroadSynonym } ?mondo a owl:Class ; - rdfs:label ?label ; + ?p ?label ; oboInOwl:id ?mondo_id . BIND (strafter(str(?mondo_id), 'MONDO:') AS ?id) diff --git a/docs/help.md b/docs/help.md index a17518be..c861d79a 100644 --- a/docs/help.md +++ b/docs/help.md @@ -1,5 +1,5 @@ # TogoID ver. 2.0 -Datasets last updated: 2024-11-18 +Datasets last updated: 2024-11-26 ## About - [TogoID](https://togoid.dbcls.jp/) is an ID conversion service implementing unique features with an intuitive web interface and an API for programmatic access. TogoID supports datasets from various biological categories such as gene, protein, chemical compound, pathway, disease, etc. TogoID users can perform exploratory multistep conversions to find a path among IDs. To guide the interpretation of biological meanings in the conversions, we crafted an [ontology](https://togoid.dbcls.jp/ontology) that defines the semantics of the dataset relations. @@ -10,7 +10,7 @@ Datasets last updated: 2024-11-18 ## Video tutorial - [How to use TogoID: an exploratory ID converter to bridge biological datasets](https://youtu.be/gXnvm6Fn4R8) -## Statistics (as of 2024-11-18) +## Statistics (as of 2024-11-26) - Number of target datasets - 105 (from 73 databases) - For details on the target DBs and ID examples, please refer to the "DATASETS" tab. diff --git a/docs/help_ja.md b/docs/help_ja.md index 2a2cda69..4ad2e7e1 100644 --- a/docs/help_ja.md +++ b/docs/help_ja.md @@ -1,5 +1,5 @@ # TogoID ver. 2.0 -Datasets last updated: 2024-11-18 +Datasets last updated: 2024-11-26 ## About - [TogoID](https://togoid.dbcls.jp/) は、直感的なインターフェースにより生命科学系データベース(DB)間のつながりを探索的に確認しながらID変換を行うことができるウェブアプリケーションです。同一の実体を指すID間の変換だけでなく、関連する別のカテゴリーのIDへの変換も可能です。また、直接リンクされていないDBのID間でも、他のDBを経由した変換を探索することができます。 @@ -10,7 +10,7 @@ Datasets last updated: 2024-11-18 ## 動画マニュアル - [TogoIDを使って生命科学系データベースのさまざまなIDを探索的に変換する](https://youtu.be/gXnvm6Fn4R8) -## 統計 (2024-11-18) +## 統計 (2024-11-26) - 対象データセット数 - 105 (73 のデータベースに由来) - 対象DBの詳細やID例については、"DATASETS" タブ からご覧いただけます。 diff --git a/docs/news.md b/docs/news.md index 54fabef5..6af8d2b2 100644 --- a/docs/news.md +++ b/docs/news.md @@ -1,3 +1,6 @@ +# 2024-11-26 +- Weekly update has been completed. + # 2024-11-18 - Weekly update has been completed. diff --git a/log/error.log b/log/error.log index 395b19b4..0ef2e372 100644 --- a/log/error.log +++ b/log/error.log @@ -3,7 +3,7 @@ Error: check_remote_file_time(input/homologene/homologene.data, https://ftp.ncbi Error: Remote file is empty # Error: output/tsv/chembl_target-ensembl_gene.tsv new file size per old 0 / 61845 = 0.0 < 0.5 # Error: Failed to create output/tsv/chembl_target-ensembl_gene.tsv or created file was empty -Error: HTTP Error 500: Internal Server Error: https://api.alpha.glycosmos.org/partialmatch?wurcs=WURCS%3D2.0%2F4%2C10%2C9%2F%5Ba2122h-1b_1-5%5D%5Ba2112h-1b_1-5%5D%5BAad21122h-2a_2-6_5%2ANCC%2F3%3DO%5D%5Ba2112h-1b_1-5_2%2ANCC%2F3%3DO%5D%2F1-2-3-3-3-4-2-3-3-3%2Fa4-b1_b3-c2_b4-f1_c8-d2_d8-e2_f3-g1_f6-j2_g3-h2_h8-i2&rootnode=true G14091MR +Error: HTTP Error 500: Internal Server Error: https://api.alpha.glycosmos.org/partialmatch?wurcs=WURCS%3D2.0%2F4%2C11%2C10%2F%5Ba2122h-1b_1-5%5D%5Ba2112h-1b_1-5%5D%5Ba2122h-1b_1-5_2%2ANCC%2F3%3DO%5D%5Ba1221m-1a_1-5%5D%2F1-2-3-2-3-2-3-4-2-3-2%2Fa4-b1_b3-c1_c4-d1_d3-e1_e4-f1_f3-g1_g3-h1_g4-i1_i3-j1_j4-k1&rootnode=true G64227KZ # Error: output/tsv/glycomotif-glytoucan.tsv new file size per old 0 / 2804382 = 0.0 < 0.5 # Error: Failed to create output/tsv/glycomotif-glytoucan.tsv or created file was empty # Error: output/tsv/glytoucan-doid.tsv new file size per old 1538 / 4376 = 0.35146252285191953 < 0.5 diff --git a/log/pair_count.tsv b/log/pair_count.tsv index 8a0ebfde..639a1229 100644 --- a/log/pair_count.tsv +++ b/log/pair_count.tsv @@ -3,11 +3,11 @@ assembly_insdc-bioproject.tsv 2283159 assembly_insdc-biosample.tsv 2225812 assembly_insdc-insdc_master.tsv 2150193 bioproject-biosample.tsv 2546485 -bioproject-geo_series.tsv 220020 -bioproject-pubmed.tsv 281552 +bioproject-geo_series.tsv 220473 +bioproject-pubmed.tsv 281950 bioproject_umbrella-bioproject.tsv 104586 -biosample-bioproject.tsv 20274353 -biosample-geo_sample.tsv 9528638 +biosample-bioproject.tsv 20329479 +biosample-geo_sample.tsv 9540054 cellosaurus-ncit_disease.tsv 75821 cellosaurus-orphanet_phenotype.tsv 41448 chebi-glytoucan.tsv 10615 @@ -34,13 +34,13 @@ chembl_target-uniprot-TIO_000002.tsv 9094 chembl_target-uniprot-TIO_000130.tsv 1533 chembl_target-uniprot-TIO_000132.tsv 1434 chembl_target-uniprot.tsv 9094 -clinvar-dbsnp.tsv 2937845 -clinvar-hgnc.tsv 3060210 -clinvar-medgen.tsv 4193666 -clinvar-mondo.tsv 1992996 -clinvar-ncbigene.tsv 3060530 -clinvar-omim_phenotype.tsv 1638969 -clinvar-orphanet_phenotype.tsv 1865227 +clinvar-dbsnp.tsv 2937841 +clinvar-hgnc.tsv 3061979 +clinvar-medgen.tsv 4196850 +clinvar-mondo.tsv 1993860 +clinvar-ncbigene.tsv 3062299 +clinvar-omim_phenotype.tsv 1639794 +clinvar-orphanet_phenotype.tsv 1865790 clinvar-uniprot.tsv 20799 cog-insdc.tsv 115826 cog-refseq_protein.tsv 3340026 @@ -68,20 +68,20 @@ glytoucan-uniprot-TIO_000126.tsv 402 glytoucan-uniprot-TIO_000128.tsv 310 glytoucan-uniprot.tsv 82906 hgnc-ccds.tsv 35510 -hgnc-ec.tsv 2083 -hgnc-ensembl_gene.tsv 41244 -hgnc-hgnc_symbol.tsv 43882 -hgnc-insdc.tsv 21162 +hgnc-ec.tsv 2118 +hgnc-ensembl_gene.tsv 41199 +hgnc-hgnc_symbol.tsv 43838 +hgnc-insdc.tsv 21140 hgnc-lrg.tsv 1325 hgnc-mgi_gene.tsv 24072 hgnc-mirbase.tsv 1912 -hgnc-ncbigene.tsv 43813 -hgnc-omim_gene.tsv 17320 -hgnc-pubmed.tsv 34994 +hgnc-ncbigene.tsv 43753 +hgnc-omim_gene.tsv 17339 +hgnc-pubmed.tsv 35030 hgnc-refseq_genomic.tsv 13532 -hgnc-refseq_rna.tsv 28776 +hgnc-refseq_rna.tsv 28712 hgnc-rgd.tsv 18945 -hgnc-uniprot.tsv 20379 +hgnc-uniprot.tsv 20374 hmdb-chebi.tsv 13701 hmdb-inchi_key.tsv 217899 hmdb-pdb_ccd.tsv 522 @@ -119,12 +119,12 @@ medgen-omim_phenotype.tsv 11043 medgen-orphanet_phenotype.tsv 9063 mgi_gene-ensembl_gene.tsv 56426 mgi_gene-hgnc.tsv 24584 -mgi_gene-mgi_allele.tsv 111987 +mgi_gene-mgi_allele.tsv 112050 mgi_gene-ncbigene.tsv 90618 mgi_gene-uniprot.tsv 79070 -mgi_genotype-doid.tsv 7839 -mgi_genotype-mgi_allele.tsv 124809 -mgi_genotype-mp.tsv 401409 +mgi_genotype-doid.tsv 7840 +mgi_genotype-mgi_allele.tsv 125052 +mgi_genotype-mp.tsv 401482 mondo-doid.tsv 10712 mondo-hp_phenotype.tsv 574 mondo-meddra.tsv 1486 @@ -132,25 +132,25 @@ mondo-mesh.tsv 8352 mondo-omim_phenotype.tsv 9693 mondo-orphanet_phenotype.tsv 10380 nando-mondo.tsv 2390 -ncbigene-ensembl_gene.tsv 11671120 -ncbigene-ensembl_protein.tsv 13442158 -ncbigene-ensembl_transcript.tsv 14133616 +ncbigene-ensembl_gene.tsv 11681986 +ncbigene-ensembl_protein.tsv 13454144 +ncbigene-ensembl_transcript.tsv 14146143 ncbigene-flybase_gene.tsv 25078 -ncbigene-go.tsv 102174797 -ncbigene-hgnc.tsv 43838 +ncbigene-go.tsv 102598546 +ncbigene-hgnc.tsv 43845 ncbigene-mgi_gene.tsv 71682 ncbigene-mirbase.tsv 17541 -ncbigene-omim_gene.tsv 18546 -ncbigene-refseq_genomic.tsv 211768 -ncbigene-refseq_protein.tsv 69217894 -ncbigene-refseq_rna.tsv 67173120 -ncbigene-rgd.tsv 47289 +ncbigene-omim_gene.tsv 18551 +ncbigene-refseq_genomic.tsv 211770 +ncbigene-refseq_protein.tsv 69690608 +ncbigene-refseq_rna.tsv 67642626 +ncbigene-rgd.tsv 77241 ncbigene-sgd.tsv 6471 ncbigene-tair.tsv 32835 -ncbigene-taxonomy.tsv 57305467 +ncbigene-taxonomy.tsv 57768578 ncbigene-vgnc.tsv 112162 ncbigene-wormbase_gene.tsv 28785 -ncbigene-xenbase_gene.tsv 46841 +ncbigene-xenbase_gene.tsv 46840 ncbigene-zfin_gene.tsv 27177 ncit_disease-ncit_tissue.tsv 27199 oma_protein-ensembl_gene.tsv 2533621 @@ -170,14 +170,14 @@ pdb-interpro.tsv 726658 pdb-pdb_ccd.tsv 530587 pdb-pfam.tsv 339565 pdb-uniprot.tsv 341431 -pmc-pubmed.tsv 9638140 +pmc-pubmed.tsv 9664384 prosite-prosite_prorule.tsv 1455 pubchem_compound-atc.tsv 4965 pubchem_compound-chebi.tsv 174843 pubchem_compound-chembl_compound.tsv 2372556 pubchem_compound-drugbank.tsv 10789 pubchem_compound-glytoucan.tsv 69203 -pubchem_compound-inchi_key.tsv 119096080 +pubchem_compound-inchi_key.tsv 119096713 pubchem_pathway-ncbigene.tsv 33861 pubchem_pathway-pathbank.tsv 69387 pubchem_pathway-pubchem_compound.tsv 1253395 @@ -195,7 +195,7 @@ reactome_reaction-go.tsv 3318 reactome_reaction-iuphar_ligand.tsv 14709 reactome_reaction-mirbase.tsv 194 reactome_reaction-uniprot.tsv 679876 -refseq_protein-uniprot.tsv 154617878 +refseq_protein-uniprot.tsv 154617876 refseq_rna-dbsnp.tsv 267033326 refseq_rna-hgnc.tsv 227308 refseq_rna-ncbigene.tsv 66957414 @@ -209,28 +209,28 @@ rhea-go.tsv 4435 rhea-pubmed.tsv 142680 rhea-reactome_reaction.tsv 1511 rhea-uniprot.tsv 41448659 -sra_accession-bioproject.tsv 537477 -sra_accession-biosample.tsv 32055914 +sra_accession-bioproject.tsv 537619 +sra_accession-biosample.tsv 32063559 sra_accession-sra_analysis.tsv 329284 -sra_accession-sra_experiment.tsv 36095148 -sra_accession-sra_project.tsv 624977 -sra_accession-sra_run.tsv 40902883 -sra_accession-sra_sample.tsv 34804828 -sra_experiment-bioproject.tsv 31554967 -sra_experiment-biosample.tsv 31873477 -sra_experiment-sra_project.tsv 31899488 -sra_experiment-sra_sample.tsv 31899211 -sra_project-bioproject.tsv 537496 -sra_run-bioproject.tsv 33441595 -sra_run-biosample.tsv 33758531 -sra_run-sra_experiment.tsv 33817349 -sra_run-sra_project.tsv 33798890 -sra_run-sra_sample.tsv 33786315 -sra_sample-biosample.tsv 32070333 +sra_accession-sra_experiment.tsv 36134714 +sra_accession-sra_project.tsv 625496 +sra_accession-sra_run.tsv 40945774 +sra_accession-sra_sample.tsv 34837349 +sra_experiment-bioproject.tsv 31577033 +sra_experiment-biosample.tsv 31881755 +sra_experiment-sra_project.tsv 31921554 +sra_experiment-sra_sample.tsv 31921277 +sra_project-bioproject.tsv 537638 +sra_run-bioproject.tsv 33463976 +sra_run-biosample.tsv 33772350 +sra_run-sra_experiment.tsv 33847764 +sra_run-sra_project.tsv 33821271 +sra_run-sra_sample.tsv 33813940 +sra_sample-biosample.tsv 32077978 swisslipids-chebi.tsv 4276 swisslipids-hmdb.tsv 26026 swisslipids-inchi_key.tsv 593209 -taxonomy-pubmed.tsv 50609 +taxonomy-pubmed.tsv 50616 togovar-clinvar.tsv 745335 togovar-dbsnp.tsv 66877211 togovar-ensembl_gene.tsv 72473309 @@ -270,4 +270,4 @@ wikipathways-hmdb.tsv 4131 wikipathways-lipidmaps.tsv 1429 wikipathways-ncbigene.tsv 30267 wikipathways-uniprot.tsv 33518 -total 5197418100 +total 5199738167 diff --git a/log/pair_count_history.tsv b/log/pair_count_history.tsv index 38eae374..8efbeb7c 100644 --- a/log/pair_count_history.tsv +++ b/log/pair_count_history.tsv @@ -65,3 +65,4 @@ Date affy_probeset-ncbigene assembly_insdc-bioproject assembly_insdc-biosample a 2024-11-02 19063 2283159 2225812 2150193 2546485 219155 280897 104586 20158980 9499972 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937819 3052664 4183498 1991311 3052984 1637518 1862716 20799 115826 3340026 4019 4849 5671 55423 12969337 15910019 47792 14749031 5546630 12969340 241195 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2083 41244 43882 21162 1325 24072 1912 43813 17320 34994 13532 28776 18945 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24587 110999 90618 79034 7838 124731 401241 10712 574 1486 8352 9693 10380 2390 11648014 13414145 14101829 25078 101701291 43833 71682 17541 18541 211762 69118246 67171889 47288 6471 32835 57206436 112162 28785 46842 27169 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9614170 1455 4965 174843 2372556 10789 69203 118730900 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154618873 267059416 227230 65546825 190869 6191600 56922967 65576846 216654 7719 4435 142680 1511 41448659 536535 31958980 329255 35876479 621556 40676738 34592184 31454530 31789122 31799051 31798774 536554 33327693 33673989 33691490 33684988 33683705 31973248 4276 26026 593209 50467 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 11471 1148 4125 1398 30268 33518 5190192279 2024-11-09 19063 2283159 2225812 2150193 2546485 219632 281330 104586 20225455 9517180 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937837 3055902 4188105 1991707 3056222 1637694 1862922 20799 115826 3340026 4019 4849 5671 55423 12969337 15910019 47792 14749031 5546630 12969340 241195 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2083 41244 43882 21162 1325 24072 1912 43813 17320 34994 13532 28776 18945 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24584 111129 90618 79070 7839 124777 401337 10712 574 1486 8352 9693 10380 2390 11671126 13442166 14133624 25078 102174808 43833 71682 17541 18544 211764 69154949 67173056 47289 6471 32835 57240175 112162 28785 46841 27171 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9629383 1455 4965 174843 2372556 10789 69203 119084186 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154618104 267059416 227230 65546825 190869 6191600 56922967 65576846 216654 7719 4435 142680 1511 41448659 537052 32023315 329284 35985315 623349 40790046 34699841 31502359 31834873 31846880 31846603 537071 33386528 33719878 33751992 33743823 33731672 32037734 4276 26026 593209 50581 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 11471 1148 4125 1398 30268 33518 5192207706 2024-11-16 19063 2283159 2225812 2150193 2546485 220020 281552 104586 20274353 9528638 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937845 3060210 4193666 1992996 3060530 1638969 1865227 20799 115826 3340026 4019 4849 5671 55423 12969337 15910019 47792 14749031 5546630 12969340 241195 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2083 41244 43882 21162 1325 24072 1912 43813 17320 34994 13532 28776 18945 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24584 111987 90618 79070 7839 124809 401409 10712 574 1486 8352 9693 10380 2390 11671120 13442158 14133616 25078 102174797 43838 71682 17541 18546 211768 69217894 67173120 47289 6471 32835 57305467 112162 28785 46841 27177 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9638140 1455 4965 174843 2372556 10789 69203 119096080 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154617878 267033326 227308 66957414 190999 6311722 58133044 66987567 216654 7719 4435 142680 1511 41448659 537477 32055914 329284 36095148 624977 40902883 34804828 31554967 31873477 31899488 31899211 537496 33441595 33758531 33817349 33798890 33786315 32070333 4276 26026 593209 50609 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 5929 1153 4131 1429 30267 33518 5197418100 +2024-11-23 19063 2283159 2225812 2150193 2546485 220473 281950 104586 20329479 9540054 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937841 3061979 4196850 1993860 3062299 1639794 1865790 20799 115826 3340026 4019 4849 5671 55423 12969337 15910019 47792 14749031 5546630 12969340 241195 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2118 41199 43838 21140 1325 24072 1912 43753 17339 35030 13532 28712 18945 20374 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24584 112050 90618 79070 7840 125052 401482 10712 574 1486 8352 9693 10380 2390 11681986 13454144 14146143 25078 102598546 43845 71682 17541 18551 211770 69690608 67642626 77241 6471 32835 57768578 112162 28785 46840 27177 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9664384 1455 4965 174843 2372556 10789 69203 119096713 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154617876 267033326 227308 66957414 190999 6311722 58133044 66987567 216654 7719 4435 142680 1511 41448659 537619 32063559 329284 36134714 625496 40945774 34837349 31577033 31881755 31921554 31921277 537638 33463976 33772350 33847764 33821271 33813940 32077978 4276 26026 593209 50616 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 5929 1153 4131 1429 30267 33518 5199738167 diff --git a/log/update.log b/log/update.log index 8b5ed547..cf7d00f9 100644 --- a/log/update.log +++ b/log/update.log @@ -1,20 +1,19 @@ -*** Started: 2024-11-15T17:00:18 *** +*** Started: 2024-11-22T20:41:44 *** ## Prepare input files for BioProject # Checking lock file input/bioproject/download.lock for download -# Local file time: 2024-11-07 19:20:53 +0900 (input/bioproject/bioproject.xml) -# Remote file time: 2024-11-14 10:25:49 +0000 (https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml) +# Local file time: 2024-11-21 19:25:00 +0900 (input/bioproject/bioproject.xml) +# Remote file time: 2024-11-22 10:24:34 +0000 (https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/bioproject https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml python bin/bioproject_xml2tsv.py input/bioproject/bioproject.xml > input/bioproject/bioproject.tsv # Overwriting timestamp of the input/bioproject/download.lock ## Prepare input files for BioSample # Checking lock file input/biosample/download.lock for download -# Local file time: 2024-11-07 23:21:33 +0900 (input/biosample/biosample_set.xml.gz) -# Remote file time: 2024-11-14 14:29:09 +0000 (https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz) -wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/biosample https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz -gzip -dc input/biosample/biosample_set.xml.gz > input/biosample/biosample_set.xml -python bin/biosample_xml2tsv.py input/biosample/biosample_set.xml > input/biosample/biosample_set.tsv -# Overwriting timestamp of the input/biosample/download.lock +# Local file time: 2024-11-20 23:21:27 +0900 (input/biosample/biosample_set.xml.gz) +# Remote file time: 2024-11-20 14:21:27 +0000 (https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz) +# Local file size: 3168609624 (input/biosample/biosample_set.xml.gz) +# Remote file size: 3168609624 (https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz) +# Preserving timestamp of the input/biosample/download.lock ## Prepare input files for Cellosaurus # Checking lock file input/cellosaurus/download.lock for download # Local file time: 2024-09-10 19:57:24 +0900 (input/cellosaurus/cellosaurus.txt) @@ -24,16 +23,15 @@ python bin/biosample_xml2tsv.py input/biosample/biosample_set.xml > input/biosam # Preserving timestamp of the input/cellosaurus/download.lock ## Prepare input files for ClinVar # Checking lock file input/clinvar/download.lock for download -# Local file time: 2024-11-04 15:23:52 +0900 (input/clinvar/variant_summary.txt.gz) -# Remote file time: 2024-11-12 01:45:38 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz) -wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/clinvar https://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz -gzip -dc input/clinvar/variant_summary.txt.gz > input/clinvar/variant_summary.txt -# Overwriting timestamp of the input/clinvar/download.lock +# Local file time: 2024-11-21 07:27:11 +0900 (input/clinvar/variant_summary.txt.gz) +# Remote file time: 2024-11-20 22:27:11 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz) +# Local file size: 286525403 (input/clinvar/variant_summary.txt.gz) +# Remote file size: 286525403 (https://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz) +# Preserving timestamp of the input/clinvar/download.lock ## Prepare input files for Ensembl # Checking lock file input/ensembl/download.lock for download -# File input/ensembl/taxonomy.txt is created 6.998501807443148 days ago (will be updated when >5 days) -sparql_csv2tsv.sh input/ensembl/taxonomy.rq https://rdfportal.org/ebi/sparql > input/ensembl/taxonomy.txt -# Overwriting timestamp of the input/ensembl/download.lock +# File input/ensembl/taxonomy.txt is created 0.0626608927697801 days ago (will be updated when >5 days) +# Preserving timestamp of the input/ensembl/download.lock ## Prepare input files for GlyTouCan # Checking lock file input/glytoucan/download.lock for download wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/glytoucan https://glycosmos.org/download/glycosmos_ggdbs_pubmed.csv @@ -50,10 +48,9 @@ sparql_csv2tsv.sh bin/sparql/glycogene-uniprot.rq https://ts.glycosmos.org/sparq ## Prepare input files for HGNC # Checking lock file input/hgnc/download.lock for download # Local file time: 2024-10-19 02:02:15 +0900 (input/hgnc/hgnc_complete_set.txt) -# Remote file time: 2024-10-18 17:02:15 +0000 (https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt) -# Local file size: 16204004 (input/hgnc/hgnc_complete_set.txt) -# Remote file size: 16204004 (https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt) -# Preserving timestamp of the input/hgnc/download.lock +# Remote file time: 2024-11-19 14:39:37 +0000 (https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/hgnc https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt +# Overwriting timestamp of the input/hgnc/download.lock ## Prepare input files for Homologene # Checking lock file input/homologene/download.lock for download Error: check_remote_file_time(input/homologene/homologene.data, https://ftp.ncbi.nlm.nih.gov/pub/HomoloGene/current/homologene.data): no time information in "" @@ -101,49 +98,49 @@ bin/sparql_csv2tsv.sh bin/sparql/hp_category.rq https://rdfportal.org/bioportal/ # Preserving timestamp of the input/interpro/download.lock ## Prepare input files for MGI_GENE # Checking lock file input/mgi_gene/download.lock for download -# Local file time: 2024-11-04 22:03:58 +0900 (input/mgi_gene/MRK_List2.rpt) -# Remote file time: 2024-11-11 13:02:12 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt) +# Local file time: 2024-11-11 22:02:12 +0900 (input/mgi_gene/MRK_List2.rpt) +# Remote file time: 2024-11-18 13:01:51 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt -# Local file time: 2024-11-04 22:01:50 +0900 (input/mgi_gene/MGI_Gene_Model_Coord.rpt) -# Remote file time: 2024-11-11 13:00:53 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt) +# Local file time: 2024-11-11 22:00:53 +0900 (input/mgi_gene/MGI_Gene_Model_Coord.rpt) +# Remote file time: 2024-11-18 13:00:48 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt -# Local file time: 2024-11-04 22:04:09 +0900 (input/mgi_gene/MRK_SwissProt_TrEMBL.rpt) -# Remote file time: 2024-11-11 13:02:21 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt) +# Local file time: 2024-11-11 22:02:21 +0900 (input/mgi_gene/MRK_SwissProt_TrEMBL.rpt) +# Remote file time: 2024-11-18 13:01:58 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt -# Local file time: 2024-11-04 22:00:40 +0900 (input/mgi_gene/HGNC_AllianceHomology.rpt) -# Remote file time: 2024-11-11 13:00:29 +0000 (https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt) +# Local file time: 2024-11-11 22:00:29 +0900 (input/mgi_gene/HGNC_AllianceHomology.rpt) +# Remote file time: 2024-11-18 13:00:25 +0000 (https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt -# Local file time: 2024-11-04 22:03:15 +0900 (input/mgi_gene/MGI_PhenotypicAllele.rpt) -# Remote file time: 2024-11-11 13:01:42 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt) +# Local file time: 2024-11-11 22:01:42 +0900 (input/mgi_gene/MGI_PhenotypicAllele.rpt) +# Remote file time: 2024-11-18 13:01:26 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt # Overwriting timestamp of the input/mgi_gene/download.lock ## Prepare input files for MGI_GENOTYPE # Checking lock file input/mgi_genotype/download.lock for download -# Local file time: 2024-11-04 22:01:34 +0900 (input/mgi_genotype/MGI_DiseaseGeneModel.rpt) -# Remote file time: 2024-11-11 13:00:45 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt) +# Local file time: 2024-11-11 22:00:45 +0900 (input/mgi_genotype/MGI_DiseaseGeneModel.rpt) +# Remote file time: 2024-11-18 13:00:41 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_genotype https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt ruby bin/query_mousemine.rb > input/mgi_genotype/mousemine_genotype.tsv # Overwriting timestamp of the input/mgi_genotype/download.lock ## Prepare input files for NCBI Gene # Checking lock file input/ncbigene/download.lock for download -# Local file time: 2024-11-08 14:23:21 +0900 (input/ncbigene/gene2refseq.gz) -# Remote file time: 2024-11-15 07:10:15 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz) +# Local file time: 2024-11-15 16:10:15 +0900 (input/ncbigene/gene2refseq.gz) +# Remote file time: 2024-11-22 05:11:45 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz gzip -dc input/ncbigene/gene2refseq.gz > input/ncbigene/gene2refseq -# Local file time: 2024-11-08 14:17:57 +0900 (input/ncbigene/gene2ensembl.gz) -# Remote file time: 2024-11-15 07:02:56 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz) +# Local file time: 2024-11-15 16:02:56 +0900 (input/ncbigene/gene2ensembl.gz) +# Remote file time: 2024-11-22 05:06:58 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz gzip -dc input/ncbigene/gene2ensembl.gz > input/ncbigene/gene2ensembl -# Local file time: 2024-11-08 14:19:55 +0900 (input/ncbigene/gene2go.gz) -# Remote file time: 2024-11-15 07:05:22 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz) +# Local file time: 2024-11-15 16:05:22 +0900 (input/ncbigene/gene2go.gz) +# Remote file time: 2024-11-22 05:08:45 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz gzip -dc input/ncbigene/gene2go.gz > input/ncbigene/gene2go -# Local file time: 2024-11-08 14:33:36 +0900 (input/ncbigene/Homo_sapiens.gene_info.gz) -# Remote file time: 2024-11-15 07:21:03 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz) +# Local file time: 2024-11-15 16:21:03 +0900 (input/ncbigene/Homo_sapiens.gene_info.gz) +# Remote file time: 2024-11-22 05:19:04 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz gzip -dc input/ncbigene/Homo_sapiens.gene_info.gz > input/ncbigene/Homo_sapiens.gene_info -# Local file time: 2024-11-08 14:26:15 +0900 (input/ncbigene/gene_info.gz) -# Remote file time: 2024-11-15 07:13:14 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz) +# Local file time: 2024-11-15 16:13:14 +0900 (input/ncbigene/gene_info.gz) +# Remote file time: 2024-11-22 05:13:43 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz gzip -dc input/ncbigene/gene_info.gz > input/ncbigene/gene_info # Overwriting timestamp of the input/ncbigene/download.lock @@ -164,8 +161,8 @@ gzip -dc input/ncbigene/gene_info.gz > input/ncbigene/gene_info # Preserving timestamp of the input/oma_protein/download.lock ## Prepare input files for PMC # Checking lock file input/pmc/download.lock for download -# Local file time: 2024-11-08 19:16:14 +0900 (input/pmc/PMC-ids.csv.gz) -# Remote file time: 2024-11-14 10:10:18 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz) +# Local file time: 2024-11-14 19:10:18 +0900 (input/pmc/PMC-ids.csv.gz) +# Remote file time: 2024-11-22 10:24:41 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/pmc https://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz gzip -dc input/pmc/PMC-ids.csv.gz > input/pmc/PMC-ids.csv # Overwriting timestamp of the input/pmc/download.lock @@ -233,19 +230,17 @@ gzip -dc input/pmc/PMC-ids.csv.gz > input/pmc/PMC-ids.csv # Preserving timestamp of the input/reactome/download.lock ## Prepare input files for RefSeq Protein # Checking lock file input/refseq_protein/download.lock for download -# Local file time: 2024-11-07 19:22:47 +0900 (input/refseq_protein/gene_refseq_uniprotkb_collab.gz) -# Remote file time: 2024-11-14 10:22:40 +0000 (https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz) +# Local file time: 2024-11-14 19:22:40 +0900 (input/refseq_protein/gene_refseq_uniprotkb_collab.gz) +# Remote file time: 2024-11-21 10:22:57 +0000 (https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/refseq_protein https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz # Overwriting timestamp of the input/refseq_protein/download.lock ## Prepare input files for RefSeq RNA # Checking lock file input/refseq_rna/download.lock for download -# Local file time: 2024-09-13 14:51:19 +0900 (input/refseq_rna/RELEASE_NUMBER) +# Local file time: 2024-11-08 16:59:29 +0900 (input/refseq_rna/RELEASE_NUMBER) # Remote file time: 2024-11-08 07:59:29 +0000 (https://ftp.ncbi.nlm.nih.gov/refseq/release/RELEASE_NUMBER) -wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/refseq_rna https://ftp.ncbi.nlm.nih.gov/refseq/release/RELEASE_NUMBER -rm -f input/refseq_rna/complete.*.rna.gbff.gz -wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/refseq_rna --accept 'complete.*.rna.gbff.gz' ftp://ftp.ncbi.nlm.nih.gov:/refseq/release/complete/ -gzip -dc input/refseq_rna/complete.*.rna.gbff.gz | parse_refseq_rna_gbff.pl --summary > input/refseq_rna/refseq_rna_summary.tsv -# Overwriting timestamp of the input/refseq_rna/download.lock +# Local file size: 4 (input/refseq_rna/RELEASE_NUMBER) +# Remote file size: 4 (https://ftp.ncbi.nlm.nih.gov/refseq/release/RELEASE_NUMBER) +# Preserving timestamp of the input/refseq_rna/download.lock ## Prepare input files for Rhea # Checking lock file input/rhea/download.lock for download # Local file time: 2024-10-02 22:00:00 +0900 (input/rhea/rhea2uniprot_sprot.tsv) @@ -263,8 +258,8 @@ gzip -dc input/refseq_rna/complete.*.rna.gbff.gz | parse_refseq_rna_gbff.pl --su # Preserving timestamp of the input/rhea/download.lock ## Prepare input files for SRA # Checking lock file input/sra/download.lock for download -# Local file time: 2024-11-08 03:49:52 +0900 (input/sra/SRA_Accessions.tab) -# Remote file time: 2024-11-14 19:01:40 +0000 (https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab) +# Local file time: 2024-11-15 04:01:40 +0900 (input/sra/SRA_Accessions.tab) +# Remote file time: 2024-11-17 19:21:17 +0000 (https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/sra https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab # Overwriting timestamp of the input/sra/download.lock ## Prepare input files for SwissLipids @@ -288,214 +283,214 @@ wget --quiet --no-check-certificate -O input/uniprot/uniprot_reference_proteome. # Preserving timestamp of the input/uniprot/download.lock ## Prepare input files for Taxonomy # Checking lock file input/taxonomy/download.lock for download -# Local file time: 2024-11-08 19:29:40 +0900 (input/taxonomy/taxdump.tar.gz) -# Remote file time: 2024-11-15 17:29:07 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz) +# Local file time: 2024-11-16 02:29:07 +0900 (input/taxonomy/taxdump.tar.gz) +# Remote file time: 2024-11-22 12:28:36 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/taxonomy https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz mkdir -p input/taxonomy/taxdump && tar xzf input/taxonomy/taxdump.tar.gz -C input/taxonomy/taxdump/ # Overwriting timestamp of the input/taxonomy/download.lock ### Update TSV for affy_probeset-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/affy_probeset-ncbigene.tsv is newer than config/affy_probeset-ncbigene/config.yaml # File output/tsv/affy_probeset-ncbigene.tsv has no timestamp file -# File output/tsv/affy_probeset-ncbigene.tsv is created 7.286951710379467 days ago (will be updated when >5 days) +# File output/tsv/affy_probeset-ncbigene.tsv is created 6.778924766252802 days ago (will be updated when >5 days) ## Update config/affy_probeset-ncbigene/config.yaml => output/tsv/affy_probeset-ncbigene.tsv -< 2024-11-16T03:12:06 affy_probeset-ncbigene +< 2024-11-22T21:53:47 affy_probeset-ncbigene togoid-config config/affy_probeset-ncbigene update # Success: output/tsv/affy_probeset-ncbigene.tsv is updated -> 2024-11-16T03:12:08 affy_probeset-ncbigene +> 2024-11-22T21:53:48 affy_probeset-ncbigene Rule for TSV (output/tsv/affy_probeset-ncbigene.tsv) ------------------------------ Investigating output/tsv/affy_probeset-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:12:08 +0900 +timestamp: 2024-11-22 21:53:48 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for assembly_insdc-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-bioproject.tsv is newer than config/assembly_insdc-bioproject/config.yaml # File output/tsv/assembly_insdc-bioproject.tsv has no timestamp file -# File output/tsv/assembly_insdc-bioproject.tsv is created 7.2869326959711795 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-bioproject.tsv is created 6.778915314987674 days ago (will be updated when >5 days) ## Update config/assembly_insdc-bioproject/config.yaml => output/tsv/assembly_insdc-bioproject.tsv -< 2024-11-16T03:12:08 assembly_insdc-bioproject +< 2024-11-22T21:53:48 assembly_insdc-bioproject togoid-config config/assembly_insdc-bioproject update # Success: output/tsv/assembly_insdc-bioproject.tsv is updated -> 2024-11-16T03:12:10 assembly_insdc-bioproject +> 2024-11-22T21:53:51 assembly_insdc-bioproject Rule for TSV (output/tsv/assembly_insdc-bioproject.tsv) ------------------------------ Investigating output/tsv/assembly_insdc-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:12:10 +0900 +timestamp: 2024-11-22 21:53:51 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for assembly_insdc-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-biosample.tsv is newer than config/assembly_insdc-biosample/config.yaml # File output/tsv/assembly_insdc-biosample.tsv has no timestamp file -# File output/tsv/assembly_insdc-biosample.tsv is created 7.286925131610035 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-biosample.tsv is created 6.778915806330335 days ago (will be updated when >5 days) ## Update config/assembly_insdc-biosample/config.yaml => output/tsv/assembly_insdc-biosample.tsv -< 2024-11-16T03:12:10 assembly_insdc-biosample +< 2024-11-22T21:53:51 assembly_insdc-biosample togoid-config config/assembly_insdc-biosample update # Success: output/tsv/assembly_insdc-biosample.tsv is updated -> 2024-11-16T03:12:13 assembly_insdc-biosample +> 2024-11-22T21:53:54 assembly_insdc-biosample Rule for TSV (output/tsv/assembly_insdc-biosample.tsv) ------------------------------ Investigating output/tsv/assembly_insdc-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:12:13 +0900 +timestamp: 2024-11-22 21:53:54 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for assembly_insdc-insdc_master if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-insdc_master.tsv is newer than config/assembly_insdc-insdc_master/config.yaml # File output/tsv/assembly_insdc-insdc_master.tsv has no timestamp file -# File output/tsv/assembly_insdc-insdc_master.tsv is created 7.286924747433229 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-insdc_master.tsv is created 6.778920663905139 days ago (will be updated when >5 days) ## Update config/assembly_insdc-insdc_master/config.yaml => output/tsv/assembly_insdc-insdc_master.tsv -< 2024-11-16T03:12:13 assembly_insdc-insdc_master +< 2024-11-22T21:53:54 assembly_insdc-insdc_master togoid-config config/assembly_insdc-insdc_master update # Success: output/tsv/assembly_insdc-insdc_master.tsv is updated -> 2024-11-16T03:12:15 assembly_insdc-insdc_master +> 2024-11-22T21:53:57 assembly_insdc-insdc_master Rule for TSV (output/tsv/assembly_insdc-insdc_master.tsv) ------------------------------ Investigating output/tsv/assembly_insdc-insdc_master.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:12:15 +0900 +timestamp: 2024-11-22 21:53:57 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for bioproject-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-biosample.tsv is newer than config/bioproject-biosample/config.yaml # File output/tsv/bioproject-biosample.tsv is older than input/bioproject/download.lock ## Update config/bioproject-biosample/config.yaml => output/tsv/bioproject-biosample.tsv -< 2024-11-16T03:12:15 bioproject-biosample +< 2024-11-22T21:53:57 bioproject-biosample togoid-config config/bioproject-biosample update # Success: output/tsv/bioproject-biosample.tsv is updated -> 2024-11-16T03:12:18 bioproject-biosample +> 2024-11-22T21:54:01 bioproject-biosample Rule for TSV (output/tsv/bioproject-biosample.tsv) ------------------------------ Investigating output/tsv/bioproject-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:12:18 +0900 +timestamp: 2024-11-22 21:54:01 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-11-16 03:12:18 +0900) -latest-prerequisite time: 2024-11-16 03:12:18 +0900 +--prepare:bioproject (2024-11-22 21:54:01 +0900) +latest-prerequisite time: 2024-11-22 21:54:01 +0900 ................................ ### Update TSV for bioproject-geo_series if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-geo_series.tsv is newer than config/bioproject-geo_series/config.yaml # File output/tsv/bioproject-geo_series.tsv is older than input/bioproject/download.lock ## Update config/bioproject-geo_series/config.yaml => output/tsv/bioproject-geo_series.tsv -< 2024-11-16T03:12:18 bioproject-geo_series +< 2024-11-22T21:54:01 bioproject-geo_series togoid-config config/bioproject-geo_series update # Success: output/tsv/bioproject-geo_series.tsv is updated -> 2024-11-16T03:12:20 bioproject-geo_series +> 2024-11-22T21:54:03 bioproject-geo_series Rule for TSV (output/tsv/bioproject-geo_series.tsv) ------------------------------ Investigating output/tsv/bioproject-geo_series.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:12:20 +0900 +timestamp: 2024-11-22 21:54:03 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-11-16 03:12:20 +0900) -latest-prerequisite time: 2024-11-16 03:12:20 +0900 +--prepare:bioproject (2024-11-22 21:54:03 +0900) +latest-prerequisite time: 2024-11-22 21:54:03 +0900 ................................ ### Update TSV for bioproject-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-pubmed.tsv is newer than config/bioproject-pubmed/config.yaml # File output/tsv/bioproject-pubmed.tsv is older than input/bioproject/download.lock ## Update config/bioproject-pubmed/config.yaml => output/tsv/bioproject-pubmed.tsv -< 2024-11-16T03:12:20 bioproject-pubmed +< 2024-11-22T21:54:03 bioproject-pubmed togoid-config config/bioproject-pubmed update # Success: output/tsv/bioproject-pubmed.tsv is updated -> 2024-11-16T03:12:22 bioproject-pubmed +> 2024-11-22T21:54:04 bioproject-pubmed Rule for TSV (output/tsv/bioproject-pubmed.tsv) ------------------------------ Investigating output/tsv/bioproject-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:12:22 +0900 +timestamp: 2024-11-22 21:54:04 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-11-16 03:12:22 +0900) -latest-prerequisite time: 2024-11-16 03:12:22 +0900 +--prepare:bioproject (2024-11-22 21:54:04 +0900) +latest-prerequisite time: 2024-11-22 21:54:04 +0900 ................................ ### Update TSV for bioproject_umbrella-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject_umbrella-bioproject.tsv is newer than config/bioproject_umbrella-bioproject/config.yaml # File output/tsv/bioproject_umbrella-bioproject.tsv has no timestamp file -# File output/tsv/bioproject_umbrella-bioproject.tsv is created 7.286954993553217 days ago (will be updated when >5 days) +# File output/tsv/bioproject_umbrella-bioproject.tsv is created 6.778957471176886 days ago (will be updated when >5 days) ## Update config/bioproject_umbrella-bioproject/config.yaml => output/tsv/bioproject_umbrella-bioproject.tsv -< 2024-11-16T03:12:22 bioproject_umbrella-bioproject +< 2024-11-22T21:54:04 bioproject_umbrella-bioproject togoid-config config/bioproject_umbrella-bioproject update # Success: output/tsv/bioproject_umbrella-bioproject.tsv is updated -> 2024-11-16T03:12:22 bioproject_umbrella-bioproject +> 2024-11-22T21:54:05 bioproject_umbrella-bioproject Rule for TSV (output/tsv/bioproject_umbrella-bioproject.tsv) ------------------------------ Investigating output/tsv/bioproject_umbrella-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:12:22 +0900 +timestamp: 2024-11-22 21:54:05 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-11-16 03:12:22 +0900) -latest-prerequisite time: 2024-11-16 03:12:22 +0900 +--prepare:bioproject (2024-11-22 21:54:05 +0900) +latest-prerequisite time: 2024-11-22 21:54:05 +0900 ................................ ### Update TSV for biosample-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/biosample-bioproject.tsv is newer than config/biosample-bioproject/config.yaml # File output/tsv/biosample-bioproject.tsv is older than input/biosample/download.lock ## Update config/biosample-bioproject/config.yaml => output/tsv/biosample-bioproject.tsv -< 2024-11-16T03:12:22 biosample-bioproject +< 2024-11-22T21:54:05 biosample-bioproject togoid-config config/biosample-bioproject update # Success: output/tsv/biosample-bioproject.tsv is updated -> 2024-11-16T03:13:43 biosample-bioproject +> 2024-11-22T21:55:22 biosample-bioproject Rule for TSV (output/tsv/biosample-bioproject.tsv) ------------------------------ Investigating output/tsv/biosample-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:13:43 +0900 +timestamp: 2024-11-22 21:55:22 +0900 pre-requisites: --output/tsv/ () ---prepare:biosample (2024-11-16 03:13:43 +0900) -latest-prerequisite time: 2024-11-16 03:13:43 +0900 +--prepare:biosample (2024-11-22 21:55:22 +0900) +latest-prerequisite time: 2024-11-22 21:55:22 +0900 ................................ ### Update TSV for biosample-geo_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/biosample-geo_sample.tsv is newer than config/biosample-geo_sample/config.yaml # File output/tsv/biosample-geo_sample.tsv is older than input/biosample/download.lock ## Update config/biosample-geo_sample/config.yaml => output/tsv/biosample-geo_sample.tsv -< 2024-11-16T03:13:43 biosample-geo_sample +< 2024-11-22T21:55:22 biosample-geo_sample togoid-config config/biosample-geo_sample update # Success: output/tsv/biosample-geo_sample.tsv is updated -> 2024-11-16T03:15:17 biosample-geo_sample +> 2024-11-22T21:56:56 biosample-geo_sample Rule for TSV (output/tsv/biosample-geo_sample.tsv) ------------------------------ Investigating output/tsv/biosample-geo_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:15:17 +0900 +timestamp: 2024-11-22 21:56:56 +0900 pre-requisites: --output/tsv/ () ---prepare:biosample (2024-11-16 03:15:17 +0900) -latest-prerequisite time: 2024-11-16 03:15:17 +0900 +--prepare:biosample (2024-11-22 21:56:56 +0900) +latest-prerequisite time: 2024-11-22 21:56:56 +0900 ................................ ### Update TSV for cellosaurus-ncit_disease if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -510,8 +505,8 @@ task needed: true timestamp: 2024-09-13 20:46:20 +0900 pre-requisites: --output/tsv/ () ---prepare:cellosaurus (2024-11-16 03:15:17 +0900) -latest-prerequisite time: 2024-11-16 03:15:17 +0900 +--prepare:cellosaurus (2024-11-22 21:56:56 +0900) +latest-prerequisite time: 2024-11-22 21:56:56 +0900 ................................ ### Update TSV for cellosaurus-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -526,271 +521,271 @@ task needed: true timestamp: 2024-09-13 20:46:24 +0900 pre-requisites: --output/tsv/ () ---prepare:cellosaurus (2024-11-16 03:15:17 +0900) -latest-prerequisite time: 2024-11-16 03:15:17 +0900 +--prepare:cellosaurus (2024-11-22 21:56:56 +0900) +latest-prerequisite time: 2024-11-22 21:56:56 +0900 ................................ ### Update TSV for chebi-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chebi-glytoucan.tsv is newer than config/chebi-glytoucan/config.yaml # File output/tsv/chebi-glytoucan.tsv has no timestamp file -# File output/tsv/chebi-glytoucan.tsv is created 7.286440221162488 days ago (will be updated when >5 days) +# File output/tsv/chebi-glytoucan.tsv is created 6.778934947247293 days ago (will be updated when >5 days) ## Update config/chebi-glytoucan/config.yaml => output/tsv/chebi-glytoucan.tsv -< 2024-11-16T03:15:17 chebi-glytoucan +< 2024-11-22T21:56:57 chebi-glytoucan togoid-config config/chebi-glytoucan update # Success: output/tsv/chebi-glytoucan.tsv is updated -> 2024-11-16T03:15:17 chebi-glytoucan +> 2024-11-22T21:56:58 chebi-glytoucan Rule for TSV (output/tsv/chebi-glytoucan.tsv) ------------------------------ Investigating output/tsv/chebi-glytoucan.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:15:17 +0900 +timestamp: 2024-11-22 21:56:58 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chebi-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chebi-inchi_key.tsv is newer than config/chebi-inchi_key/config.yaml # File output/tsv/chebi-inchi_key.tsv has no timestamp file -# File output/tsv/chebi-inchi_key.tsv is created 7.286437356625046 days ago (will be updated when >5 days) +# File output/tsv/chebi-inchi_key.tsv is created 6.7789328270614 days ago (will be updated when >5 days) ## Update config/chebi-inchi_key/config.yaml => output/tsv/chebi-inchi_key.tsv -< 2024-11-16T03:15:17 chebi-inchi_key +< 2024-11-22T21:56:58 chebi-inchi_key togoid-config config/chebi-inchi_key update # Success: output/tsv/chebi-inchi_key.tsv is updated -> 2024-11-16T03:15:18 chebi-inchi_key +> 2024-11-22T21:56:59 chebi-inchi_key Rule for TSV (output/tsv/chebi-inchi_key.tsv) ------------------------------ Investigating output/tsv/chebi-inchi_key.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:15:18 +0900 +timestamp: 2024-11-22 21:56:59 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_compound-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-chebi.tsv is newer than config/chembl_compound-chebi/config.yaml # File output/tsv/chembl_compound-chebi.tsv has no timestamp file -# File output/tsv/chembl_compound-chebi.tsv is created 7.286442855517084 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-chebi.tsv is created 6.778949847340857 days ago (will be updated when >5 days) ## Update config/chembl_compound-chebi/config.yaml => output/tsv/chembl_compound-chebi.tsv -< 2024-11-16T03:15:18 chembl_compound-chebi +< 2024-11-22T21:57:00 chembl_compound-chebi togoid-config config/chembl_compound-chebi update # Success: output/tsv/chembl_compound-chebi.tsv is updated -> 2024-11-16T03:15:19 chembl_compound-chebi +> 2024-11-22T21:57:02 chembl_compound-chebi Rule for TSV (output/tsv/chembl_compound-chebi.tsv) ------------------------------ Investigating output/tsv/chembl_compound-chebi.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:15:19 +0900 +timestamp: 2024-11-22 21:57:02 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_compound-chembl_target if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-chembl_target.tsv is newer than config/chembl_compound-chembl_target/config.yaml # File output/tsv/chembl_compound-chembl_target.tsv has no timestamp file -# File output/tsv/chembl_compound-chembl_target.tsv is created 7.275415444050857 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-chembl_target.tsv is created 6.767694442418923 days ago (will be updated when >5 days) ## Update config/chembl_compound-chembl_target/config.yaml => output/tsv/chembl_compound-chembl_target.tsv -< 2024-11-16T03:15:19 chembl_compound-chembl_target +< 2024-11-22T21:57:02 chembl_compound-chembl_target togoid-config config/chembl_compound-chembl_target update # Success: output/tsv/chembl_compound-chembl_target.tsv is updated -> 2024-11-16T03:31:34 chembl_compound-chembl_target +> 2024-11-22T22:13:16 chembl_compound-chembl_target Rule for TSV (output/tsv/chembl_compound-chembl_target.tsv) ------------------------------ Investigating output/tsv/chembl_compound-chembl_target.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:34 +0900 +timestamp: 2024-11-22 22:13:16 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_compound-drugbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-drugbank.tsv is newer than config/chembl_compound-drugbank/config.yaml # File output/tsv/chembl_compound-drugbank.tsv has no timestamp file -# File output/tsv/chembl_compound-drugbank.tsv is created 7.286694149425914 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-drugbank.tsv is created 6.778956041366342 days ago (will be updated when >5 days) ## Update config/chembl_compound-drugbank/config.yaml => output/tsv/chembl_compound-drugbank.tsv -< 2024-11-16T03:31:34 chembl_compound-drugbank +< 2024-11-22T22:13:16 chembl_compound-drugbank togoid-config config/chembl_compound-drugbank update # Success: output/tsv/chembl_compound-drugbank.tsv is updated -> 2024-11-16T03:31:34 chembl_compound-drugbank +> 2024-11-22T22:13:16 chembl_compound-drugbank Rule for TSV (output/tsv/chembl_compound-drugbank.tsv) ------------------------------ Investigating output/tsv/chembl_compound-drugbank.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:34 +0900 +timestamp: 2024-11-22 22:13:16 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_compound-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-hmdb.tsv is newer than config/chembl_compound-hmdb/config.yaml # File output/tsv/chembl_compound-hmdb.tsv has no timestamp file -# File output/tsv/chembl_compound-hmdb.tsv is created 7.286693780217813 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-hmdb.tsv is created 6.7789583307945716 days ago (will be updated when >5 days) ## Update config/chembl_compound-hmdb/config.yaml => output/tsv/chembl_compound-hmdb.tsv -< 2024-11-16T03:31:34 chembl_compound-hmdb +< 2024-11-22T22:13:16 chembl_compound-hmdb togoid-config config/chembl_compound-hmdb update # Success: output/tsv/chembl_compound-hmdb.tsv is updated -> 2024-11-16T03:31:34 chembl_compound-hmdb +> 2024-11-22T22:13:17 chembl_compound-hmdb Rule for TSV (output/tsv/chembl_compound-hmdb.tsv) ------------------------------ Investigating output/tsv/chembl_compound-hmdb.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:34 +0900 +timestamp: 2024-11-22 22:13:17 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_compound-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-inchi_key.tsv is newer than config/chembl_compound-inchi_key/config.yaml # File output/tsv/chembl_compound-inchi_key.tsv has no timestamp file -# File output/tsv/chembl_compound-inchi_key.tsv is created 7.2866453330542935 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-inchi_key.tsv is created 6.778914759461632 days ago (will be updated when >5 days) ## Update config/chembl_compound-inchi_key/config.yaml => output/tsv/chembl_compound-inchi_key.tsv -< 2024-11-16T03:31:34 chembl_compound-inchi_key +< 2024-11-22T22:13:17 chembl_compound-inchi_key togoid-config config/chembl_compound-inchi_key update # Success: output/tsv/chembl_compound-inchi_key.tsv is updated -> 2024-11-16T03:31:39 chembl_compound-inchi_key +> 2024-11-22T22:13:22 chembl_compound-inchi_key Rule for TSV (output/tsv/chembl_compound-inchi_key.tsv) ------------------------------ Investigating output/tsv/chembl_compound-inchi_key.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:39 +0900 +timestamp: 2024-11-22 22:13:22 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_compound-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-mesh.tsv is newer than config/chembl_compound-mesh/config.yaml # File output/tsv/chembl_compound-mesh.tsv has no timestamp file -# File output/tsv/chembl_compound-mesh.tsv is created 7.286688645249537 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-mesh.tsv is created 6.778965319958866 days ago (will be updated when >5 days) ## Update config/chembl_compound-mesh/config.yaml => output/tsv/chembl_compound-mesh.tsv -< 2024-11-16T03:31:39 chembl_compound-mesh +< 2024-11-22T22:13:22 chembl_compound-mesh togoid-config config/chembl_compound-mesh update # Success: output/tsv/chembl_compound-mesh.tsv is updated -> 2024-11-16T03:31:39 chembl_compound-mesh +> 2024-11-22T22:13:22 chembl_compound-mesh Rule for TSV (output/tsv/chembl_compound-mesh.tsv) ------------------------------ Investigating output/tsv/chembl_compound-mesh.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:39 +0900 +timestamp: 2024-11-22 22:13:22 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_compound-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pdb_ccd.tsv is newer than config/chembl_compound-pdb_ccd/config.yaml # File output/tsv/chembl_compound-pdb_ccd.tsv has no timestamp file -# File output/tsv/chembl_compound-pdb_ccd.tsv is created 7.286689949804491 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pdb_ccd.tsv is created 6.778966798997014 days ago (will be updated when >5 days) ## Update config/chembl_compound-pdb_ccd/config.yaml => output/tsv/chembl_compound-pdb_ccd.tsv -< 2024-11-16T03:31:39 chembl_compound-pdb_ccd +< 2024-11-22T22:13:22 chembl_compound-pdb_ccd togoid-config config/chembl_compound-pdb_ccd update # Success: output/tsv/chembl_compound-pdb_ccd.tsv is updated -> 2024-11-16T03:31:40 chembl_compound-pdb_ccd +> 2024-11-22T22:13:23 chembl_compound-pdb_ccd Rule for TSV (output/tsv/chembl_compound-pdb_ccd.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pdb_ccd.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:40 +0900 +timestamp: 2024-11-22 22:13:23 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_compound-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubchem_compound.tsv is newer than config/chembl_compound-pubchem_compound/config.yaml # File output/tsv/chembl_compound-pubchem_compound.tsv has no timestamp file -# File output/tsv/chembl_compound-pubchem_compound.tsv is created 7.28664537721478 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubchem_compound.tsv is created 6.778925573805487 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubchem_compound/config.yaml => output/tsv/chembl_compound-pubchem_compound.tsv -< 2024-11-16T03:31:40 chembl_compound-pubchem_compound +< 2024-11-22T22:13:23 chembl_compound-pubchem_compound togoid-config config/chembl_compound-pubchem_compound update # Success: output/tsv/chembl_compound-pubchem_compound.tsv is updated -> 2024-11-16T03:31:44 chembl_compound-pubchem_compound +> 2024-11-22T22:13:27 chembl_compound-pubchem_compound Rule for TSV (output/tsv/chembl_compound-pubchem_compound.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pubchem_compound.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:44 +0900 +timestamp: 2024-11-22 22:13:27 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_compound-pubchem_substance if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubchem_substance.tsv is newer than config/chembl_compound-pubchem_substance/config.yaml # File output/tsv/chembl_compound-pubchem_substance.tsv has no timestamp file -# File output/tsv/chembl_compound-pubchem_substance.tsv is created 7.286677416154561 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubchem_substance.tsv is created 6.778956971307558 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubchem_substance/config.yaml => output/tsv/chembl_compound-pubchem_substance.tsv -< 2024-11-16T03:31:44 chembl_compound-pubchem_substance +< 2024-11-22T22:13:27 chembl_compound-pubchem_substance togoid-config config/chembl_compound-pubchem_substance update # Success: output/tsv/chembl_compound-pubchem_substance.tsv is updated -> 2024-11-16T03:31:45 chembl_compound-pubchem_substance +> 2024-11-22T22:13:28 chembl_compound-pubchem_substance Rule for TSV (output/tsv/chembl_compound-pubchem_substance.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pubchem_substance.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:45 +0900 +timestamp: 2024-11-22 22:13:28 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_compound-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubmed.tsv is newer than config/chembl_compound-pubmed/config.yaml # File output/tsv/chembl_compound-pubmed.tsv has no timestamp file -# File output/tsv/chembl_compound-pubmed.tsv is created 7.286655802199097 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubmed.tsv is created 6.778935967619177 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubmed/config.yaml => output/tsv/chembl_compound-pubmed.tsv -< 2024-11-16T03:31:45 chembl_compound-pubmed +< 2024-11-22T22:13:28 chembl_compound-pubmed togoid-config config/chembl_compound-pubmed update # Success: output/tsv/chembl_compound-pubmed.tsv is updated -> 2024-11-16T03:31:48 chembl_compound-pubmed +> 2024-11-22T22:13:30 chembl_compound-pubmed Rule for TSV (output/tsv/chembl_compound-pubmed.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pubmed.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:48 +0900 +timestamp: 2024-11-22 22:13:30 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_target-ensembl_gene if check_tsv_filesize false or check_config_timestamp true or check_tsv_timestamp true # File output/tsv/chembl_target-ensembl_gene.tsv is older than config/chembl_target-ensembl_gene/config.yaml ## Update config/chembl_target-ensembl_gene/config.yaml => output/tsv/chembl_target-ensembl_gene.tsv -< 2024-11-16T03:31:48 chembl_target-ensembl_gene +< 2024-11-22T22:13:30 chembl_target-ensembl_gene togoid-config config/chembl_target-ensembl_gene update # Error: output/tsv/chembl_target-ensembl_gene.tsv new file size per old 0 / 61845 = 0.0 < 0.5 # Error: Failed to create output/tsv/chembl_target-ensembl_gene.tsv or created file was empty # Failure: output/tsv/chembl_target-ensembl_gene.tsv is not updated -> 2024-11-16T03:31:48 chembl_target-ensembl_gene +> 2024-11-22T22:13:31 chembl_target-ensembl_gene Rule for TSV (output/tsv/chembl_target-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/chembl_target-ensembl_gene.tsv @@ -799,294 +794,294 @@ task needed: true timestamp: 2023-08-25 17:59:01 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_target-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-go.tsv is newer than config/chembl_target-go/config.yaml # File output/tsv/chembl_target-go.tsv has no timestamp file -# File output/tsv/chembl_target-go.tsv is created 7.286684320707638 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-go.tsv is created 6.778962077792743 days ago (will be updated when >5 days) ## Update config/chembl_target-go/config.yaml => output/tsv/chembl_target-go.tsv -< 2024-11-16T03:31:48 chembl_target-go +< 2024-11-22T22:13:31 chembl_target-go togoid-config config/chembl_target-go update # Success: output/tsv/chembl_target-go.tsv is updated -> 2024-11-16T03:31:49 chembl_target-go +> 2024-11-22T22:13:31 chembl_target-go Rule for TSV (output/tsv/chembl_target-go.tsv) ------------------------------ Investigating output/tsv/chembl_target-go.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:49 +0900 +timestamp: 2024-11-22 22:13:31 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_target-interpro if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-interpro.tsv is newer than config/chembl_target-interpro/config.yaml # File output/tsv/chembl_target-interpro.tsv has no timestamp file -# File output/tsv/chembl_target-interpro.tsv is created 7.286684550952767 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-interpro.tsv is created 6.77895320595235 days ago (will be updated when >5 days) ## Update config/chembl_target-interpro/config.yaml => output/tsv/chembl_target-interpro.tsv -< 2024-11-16T03:31:49 chembl_target-interpro +< 2024-11-22T22:13:31 chembl_target-interpro togoid-config config/chembl_target-interpro update # Success: output/tsv/chembl_target-interpro.tsv is updated -> 2024-11-16T03:31:50 chembl_target-interpro +> 2024-11-22T22:13:32 chembl_target-interpro Rule for TSV (output/tsv/chembl_target-interpro.tsv) ------------------------------ Investigating output/tsv/chembl_target-interpro.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:50 +0900 +timestamp: 2024-11-22 22:13:32 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_target-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-pdb.tsv is newer than config/chembl_target-pdb/config.yaml # File output/tsv/chembl_target-pdb.tsv has no timestamp file -# File output/tsv/chembl_target-pdb.tsv is created 7.286693719721771 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-pdb.tsv is created 6.778953391358449 days ago (will be updated when >5 days) ## Update config/chembl_target-pdb/config.yaml => output/tsv/chembl_target-pdb.tsv -< 2024-11-16T03:31:50 chembl_target-pdb +< 2024-11-22T22:13:32 chembl_target-pdb togoid-config config/chembl_target-pdb update # Success: output/tsv/chembl_target-pdb.tsv is updated -> 2024-11-16T03:31:50 chembl_target-pdb +> 2024-11-22T22:13:32 chembl_target-pdb Rule for TSV (output/tsv/chembl_target-pdb.tsv) ------------------------------ Investigating output/tsv/chembl_target-pdb.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:50 +0900 +timestamp: 2024-11-22 22:13:32 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_target-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-pfam.tsv is newer than config/chembl_target-pfam/config.yaml # File output/tsv/chembl_target-pfam.tsv has no timestamp file -# File output/tsv/chembl_target-pfam.tsv is created 7.28669434490088 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-pfam.tsv is created 6.77895417342956 days ago (will be updated when >5 days) ## Update config/chembl_target-pfam/config.yaml => output/tsv/chembl_target-pfam.tsv -< 2024-11-16T03:31:50 chembl_target-pfam +< 2024-11-22T22:13:32 chembl_target-pfam togoid-config config/chembl_target-pfam update # Success: output/tsv/chembl_target-pfam.tsv is updated -> 2024-11-16T03:31:51 chembl_target-pfam +> 2024-11-22T22:13:33 chembl_target-pfam Rule for TSV (output/tsv/chembl_target-pfam.tsv) ------------------------------ Investigating output/tsv/chembl_target-pfam.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:51 +0900 +timestamp: 2024-11-22 22:13:33 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_target-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-reactome_pathway.tsv is newer than config/chembl_target-reactome_pathway/config.yaml # File output/tsv/chembl_target-reactome_pathway.tsv has no timestamp file -# File output/tsv/chembl_target-reactome_pathway.tsv is created 7.2866940465718395 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-reactome_pathway.tsv is created 6.778954722247697 days ago (will be updated when >5 days) ## Update config/chembl_target-reactome_pathway/config.yaml => output/tsv/chembl_target-reactome_pathway.tsv -< 2024-11-16T03:31:51 chembl_target-reactome_pathway +< 2024-11-22T22:13:33 chembl_target-reactome_pathway togoid-config config/chembl_target-reactome_pathway update # Success: output/tsv/chembl_target-reactome_pathway.tsv is updated -> 2024-11-16T03:31:51 chembl_target-reactome_pathway +> 2024-11-22T22:13:33 chembl_target-reactome_pathway Rule for TSV (output/tsv/chembl_target-reactome_pathway.tsv) ------------------------------ Investigating output/tsv/chembl_target-reactome_pathway.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:51 +0900 +timestamp: 2024-11-22 22:13:33 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for chembl_target-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-uniprot.tsv is newer than config/chembl_target-uniprot/config.yaml # File output/tsv/chembl_target-uniprot.tsv has no timestamp file -# File output/tsv/chembl_target-uniprot.tsv is created 7.286693303464607 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-uniprot.tsv is created 6.778953902603148 days ago (will be updated when >5 days) ## Update config/chembl_target-uniprot/config.yaml => output/tsv/chembl_target-uniprot.tsv -< 2024-11-16T03:31:51 chembl_target-uniprot +< 2024-11-22T22:13:33 chembl_target-uniprot togoid-config config/chembl_target-uniprot update # Success: output/tsv/chembl_target-uniprot.tsv is updated -> 2024-11-16T03:31:52 chembl_target-uniprot +> 2024-11-22T22:13:34 chembl_target-uniprot Rule for TSV (output/tsv/chembl_target-uniprot.tsv) ------------------------------ Investigating output/tsv/chembl_target-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:31:52 +0900 +timestamp: 2024-11-22 22:13:34 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for clinvar-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-dbsnp.tsv is newer than config/clinvar-dbsnp/config.yaml # File output/tsv/clinvar-dbsnp.tsv is older than input/clinvar/download.lock ## Update config/clinvar-dbsnp/config.yaml => output/tsv/clinvar-dbsnp.tsv -< 2024-11-16T03:31:52 clinvar-dbsnp +< 2024-11-22T22:13:34 clinvar-dbsnp togoid-config config/clinvar-dbsnp update # Success: output/tsv/clinvar-dbsnp.tsv is updated -> 2024-11-16T03:32:30 clinvar-dbsnp +> 2024-11-22T22:14:12 clinvar-dbsnp Rule for TSV (output/tsv/clinvar-dbsnp.tsv) ------------------------------ Investigating output/tsv/clinvar-dbsnp.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:32:30 +0900 +timestamp: 2024-11-22 22:14:12 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-16 03:32:30 +0900) -latest-prerequisite time: 2024-11-16 03:32:30 +0900 +--prepare:clinvar (2024-11-22 22:14:12 +0900) +latest-prerequisite time: 2024-11-22 22:14:12 +0900 ................................ ### Update TSV for clinvar-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-hgnc.tsv is newer than config/clinvar-hgnc/config.yaml # File output/tsv/clinvar-hgnc.tsv is older than input/clinvar/download.lock ## Update config/clinvar-hgnc/config.yaml => output/tsv/clinvar-hgnc.tsv -< 2024-11-16T03:32:30 clinvar-hgnc +< 2024-11-22T22:14:12 clinvar-hgnc togoid-config config/clinvar-hgnc update # Success: output/tsv/clinvar-hgnc.tsv is updated -> 2024-11-16T03:33:23 clinvar-hgnc +> 2024-11-22T22:15:05 clinvar-hgnc Rule for TSV (output/tsv/clinvar-hgnc.tsv) ------------------------------ Investigating output/tsv/clinvar-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:33:23 +0900 +timestamp: 2024-11-22 22:15:05 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-16 03:33:23 +0900) -latest-prerequisite time: 2024-11-16 03:33:23 +0900 +--prepare:clinvar (2024-11-22 22:15:05 +0900) +latest-prerequisite time: 2024-11-22 22:15:05 +0900 ................................ ### Update TSV for clinvar-medgen if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-medgen.tsv is newer than config/clinvar-medgen/config.yaml # File output/tsv/clinvar-medgen.tsv is older than input/clinvar/download.lock ## Update config/clinvar-medgen/config.yaml => output/tsv/clinvar-medgen.tsv -< 2024-11-16T03:33:23 clinvar-medgen +< 2024-11-22T22:15:05 clinvar-medgen togoid-config config/clinvar-medgen update # Success: output/tsv/clinvar-medgen.tsv is updated -> 2024-11-16T03:34:58 clinvar-medgen +> 2024-11-22T22:16:39 clinvar-medgen Rule for TSV (output/tsv/clinvar-medgen.tsv) ------------------------------ Investigating output/tsv/clinvar-medgen.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:34:58 +0900 +timestamp: 2024-11-22 22:16:39 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-16 03:34:58 +0900) -latest-prerequisite time: 2024-11-16 03:34:58 +0900 +--prepare:clinvar (2024-11-22 22:16:39 +0900) +latest-prerequisite time: 2024-11-22 22:16:39 +0900 ................................ ### Update TSV for clinvar-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-mondo.tsv is newer than config/clinvar-mondo/config.yaml # File output/tsv/clinvar-mondo.tsv is older than input/clinvar/download.lock ## Update config/clinvar-mondo/config.yaml => output/tsv/clinvar-mondo.tsv -< 2024-11-16T03:34:58 clinvar-mondo +< 2024-11-22T22:16:39 clinvar-mondo togoid-config config/clinvar-mondo update # Success: output/tsv/clinvar-mondo.tsv is updated -> 2024-11-16T03:36:32 clinvar-mondo +> 2024-11-22T22:18:09 clinvar-mondo Rule for TSV (output/tsv/clinvar-mondo.tsv) ------------------------------ Investigating output/tsv/clinvar-mondo.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:36:32 +0900 +timestamp: 2024-11-22 22:18:09 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-16 03:36:32 +0900) -latest-prerequisite time: 2024-11-16 03:36:32 +0900 +--prepare:clinvar (2024-11-22 22:18:09 +0900) +latest-prerequisite time: 2024-11-22 22:18:09 +0900 ................................ ### Update TSV for clinvar-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-ncbigene.tsv is newer than config/clinvar-ncbigene/config.yaml # File output/tsv/clinvar-ncbigene.tsv is older than input/clinvar/download.lock ## Update config/clinvar-ncbigene/config.yaml => output/tsv/clinvar-ncbigene.tsv -< 2024-11-16T03:36:32 clinvar-ncbigene +< 2024-11-22T22:18:09 clinvar-ncbigene togoid-config config/clinvar-ncbigene update # Success: output/tsv/clinvar-ncbigene.tsv is updated -> 2024-11-16T03:37:23 clinvar-ncbigene +> 2024-11-22T22:19:01 clinvar-ncbigene Rule for TSV (output/tsv/clinvar-ncbigene.tsv) ------------------------------ Investigating output/tsv/clinvar-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:37:23 +0900 +timestamp: 2024-11-22 22:19:01 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-16 03:37:23 +0900) -latest-prerequisite time: 2024-11-16 03:37:23 +0900 +--prepare:clinvar (2024-11-22 22:19:01 +0900) +latest-prerequisite time: 2024-11-22 22:19:01 +0900 ................................ ### Update TSV for clinvar-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-omim_phenotype.tsv is newer than config/clinvar-omim_phenotype/config.yaml # File output/tsv/clinvar-omim_phenotype.tsv is older than input/clinvar/download.lock ## Update config/clinvar-omim_phenotype/config.yaml => output/tsv/clinvar-omim_phenotype.tsv -< 2024-11-16T03:37:23 clinvar-omim_phenotype +< 2024-11-22T22:19:01 clinvar-omim_phenotype togoid-config config/clinvar-omim_phenotype update # Success: output/tsv/clinvar-omim_phenotype.tsv is updated -> 2024-11-16T03:38:54 clinvar-omim_phenotype +> 2024-11-22T22:20:30 clinvar-omim_phenotype Rule for TSV (output/tsv/clinvar-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/clinvar-omim_phenotype.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:38:54 +0900 +timestamp: 2024-11-22 22:20:30 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-16 03:38:54 +0900) -latest-prerequisite time: 2024-11-16 03:38:54 +0900 +--prepare:clinvar (2024-11-22 22:20:30 +0900) +latest-prerequisite time: 2024-11-22 22:20:30 +0900 ................................ ### Update TSV for clinvar-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-orphanet_phenotype.tsv is newer than config/clinvar-orphanet_phenotype/config.yaml # File output/tsv/clinvar-orphanet_phenotype.tsv is older than input/clinvar/download.lock ## Update config/clinvar-orphanet_phenotype/config.yaml => output/tsv/clinvar-orphanet_phenotype.tsv -< 2024-11-16T03:38:54 clinvar-orphanet_phenotype +< 2024-11-22T22:20:30 clinvar-orphanet_phenotype togoid-config config/clinvar-orphanet_phenotype update # Success: output/tsv/clinvar-orphanet_phenotype.tsv is updated -> 2024-11-16T03:40:25 clinvar-orphanet_phenotype +> 2024-11-22T22:21:59 clinvar-orphanet_phenotype Rule for TSV (output/tsv/clinvar-orphanet_phenotype.tsv) ------------------------------ Investigating output/tsv/clinvar-orphanet_phenotype.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:40:25 +0900 +timestamp: 2024-11-22 22:21:59 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-16 03:40:25 +0900) -latest-prerequisite time: 2024-11-16 03:40:25 +0900 +--prepare:clinvar (2024-11-22 22:21:59 +0900) +latest-prerequisite time: 2024-11-22 22:21:59 +0900 ................................ ### Update TSV for clinvar-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-uniprot.tsv is newer than config/clinvar-uniprot/config.yaml # File output/tsv/clinvar-uniprot.tsv is older than input/clinvar/download.lock ## Update config/clinvar-uniprot/config.yaml => output/tsv/clinvar-uniprot.tsv -< 2024-11-16T03:40:25 clinvar-uniprot +< 2024-11-22T22:21:59 clinvar-uniprot togoid-config config/clinvar-uniprot update # Success: output/tsv/clinvar-uniprot.tsv is updated -> 2024-11-16T03:41:16 clinvar-uniprot +> 2024-11-22T22:22:49 clinvar-uniprot Rule for TSV (output/tsv/clinvar-uniprot.tsv) ------------------------------ Investigating output/tsv/clinvar-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:41:16 +0900 +timestamp: 2024-11-22 22:22:49 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-16 03:41:16 +0900) -latest-prerequisite time: 2024-11-16 03:41:16 +0900 +--prepare:clinvar (2024-11-22 22:22:49 +0900) +latest-prerequisite time: 2024-11-22 22:22:49 +0900 ................................ ### Update TSV for cog-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1101,8 +1096,8 @@ task needed: true timestamp: 2023-07-28 17:55:29 +0900 pre-requisites: --output/tsv/ () ---prepare:cog (2024-11-16 03:41:16 +0900) -latest-prerequisite time: 2024-11-16 03:41:16 +0900 +--prepare:cog (2024-11-22 22:22:49 +0900) +latest-prerequisite time: 2024-11-22 22:22:49 +0900 ................................ ### Update TSV for cog-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1117,163 +1112,163 @@ task needed: true timestamp: 2023-07-28 17:55:40 +0900 pre-requisites: --output/tsv/ () ---prepare:cog (2024-11-16 03:41:16 +0900) -latest-prerequisite time: 2024-11-16 03:41:16 +0900 +--prepare:cog (2024-11-22 22:22:49 +0900) +latest-prerequisite time: 2024-11-22 22:22:49 +0900 ................................ ### Update TSV for doid-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-mesh.tsv is newer than config/doid-mesh/config.yaml # File output/tsv/doid-mesh.tsv has no timestamp file -# File output/tsv/doid-mesh.tsv is created 7.286679568289665 days ago (will be updated when >5 days) +# File output/tsv/doid-mesh.tsv is created 6.7788558699325465 days ago (will be updated when >5 days) ## Update config/doid-mesh/config.yaml => output/tsv/doid-mesh.tsv -< 2024-11-16T03:41:16 doid-mesh +< 2024-11-22T22:22:49 doid-mesh togoid-config config/doid-mesh update # Success: output/tsv/doid-mesh.tsv is updated -> 2024-11-16T03:41:16 doid-mesh +> 2024-11-22T22:22:50 doid-mesh Rule for TSV (output/tsv/doid-mesh.tsv) ------------------------------ Investigating output/tsv/doid-mesh.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:41:16 +0900 +timestamp: 2024-11-22 22:22:50 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for doid-ncit_disease if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-ncit_disease.tsv is newer than config/doid-ncit_disease/config.yaml # File output/tsv/doid-ncit_disease.tsv has no timestamp file -# File output/tsv/doid-ncit_disease.tsv is created 7.286674023001539 days ago (will be updated when >5 days) +# File output/tsv/doid-ncit_disease.tsv is created 6.778856584456076 days ago (will be updated when >5 days) ## Update config/doid-ncit_disease/config.yaml => output/tsv/doid-ncit_disease.tsv -< 2024-11-16T03:41:16 doid-ncit_disease +< 2024-11-22T22:22:50 doid-ncit_disease togoid-config config/doid-ncit_disease update # Success: output/tsv/doid-ncit_disease.tsv is updated -> 2024-11-16T03:41:17 doid-ncit_disease +> 2024-11-22T22:22:50 doid-ncit_disease Rule for TSV (output/tsv/doid-ncit_disease.tsv) ------------------------------ Investigating output/tsv/doid-ncit_disease.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:41:17 +0900 +timestamp: 2024-11-22 22:22:50 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for doid-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-omim_phenotype.tsv is newer than config/doid-omim_phenotype/config.yaml # File output/tsv/doid-omim_phenotype.tsv has no timestamp file -# File output/tsv/doid-omim_phenotype.tsv is created 7.286672199370972 days ago (will be updated when >5 days) +# File output/tsv/doid-omim_phenotype.tsv is created 6.778858118098032 days ago (will be updated when >5 days) ## Update config/doid-omim_phenotype/config.yaml => output/tsv/doid-omim_phenotype.tsv -< 2024-11-16T03:41:17 doid-omim_phenotype +< 2024-11-22T22:22:50 doid-omim_phenotype togoid-config config/doid-omim_phenotype update # Success: output/tsv/doid-omim_phenotype.tsv is updated -> 2024-11-16T03:41:17 doid-omim_phenotype +> 2024-11-22T22:22:51 doid-omim_phenotype Rule for TSV (output/tsv/doid-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/doid-omim_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:41:17 +0900 +timestamp: 2024-11-22 22:22:51 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for ensembl_gene-affy_probeset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-affy_probeset.tsv is newer than config/ensembl_gene-affy_probeset/config.yaml # File output/tsv/ensembl_gene-affy_probeset.tsv has no timestamp file -# File output/tsv/ensembl_gene-affy_probeset.tsv is created 7.286060839718091 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-affy_probeset.tsv is created 6.778195383676713 days ago (will be updated when >5 days) ## Update config/ensembl_gene-affy_probeset/config.yaml => output/tsv/ensembl_gene-affy_probeset.tsv -< 2024-11-16T03:41:17 ensembl_gene-affy_probeset +< 2024-11-22T22:22:51 ensembl_gene-affy_probeset togoid-config config/ensembl_gene-affy_probeset update # Success: output/tsv/ensembl_gene-affy_probeset.tsv is updated -> 2024-11-16T03:42:15 ensembl_gene-affy_probeset +> 2024-11-22T22:23:38 ensembl_gene-affy_probeset Rule for TSV (output/tsv/ensembl_gene-affy_probeset.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-affy_probeset.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:42:15 +0900 +timestamp: 2024-11-22 22:23:38 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-16 03:42:15 +0900) -latest-prerequisite time: 2024-11-16 03:42:15 +0900 +--prepare:ensembl (2024-11-22 22:23:38 +0900) +latest-prerequisite time: 2024-11-22 22:23:38 +0900 ................................ ### Update TSV for ensembl_gene-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ensembl_protein.tsv is newer than config/ensembl_gene-ensembl_protein/config.yaml # File output/tsv/ensembl_gene-ensembl_protein.tsv has no timestamp file -# File output/tsv/ensembl_gene-ensembl_protein.tsv is created 7.285386673761285 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ensembl_protein.tsv is created 6.777486672460012 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ensembl_protein/config.yaml => output/tsv/ensembl_gene-ensembl_protein.tsv -< 2024-11-16T03:42:15 ensembl_gene-ensembl_protein +< 2024-11-22T22:23:40 ensembl_gene-ensembl_protein togoid-config config/ensembl_gene-ensembl_protein update # Success: output/tsv/ensembl_gene-ensembl_protein.tsv is updated -> 2024-11-16T03:44:05 ensembl_gene-ensembl_protein +> 2024-11-22T22:25:33 ensembl_gene-ensembl_protein Rule for TSV (output/tsv/ensembl_gene-ensembl_protein.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-ensembl_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:44:05 +0900 +timestamp: 2024-11-22 22:25:33 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-16 03:44:05 +0900) -latest-prerequisite time: 2024-11-16 03:44:05 +0900 +--prepare:ensembl (2024-11-22 22:25:33 +0900) +latest-prerequisite time: 2024-11-22 22:25:33 +0900 ................................ ### Update TSV for ensembl_gene-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ensembl_transcript.tsv is newer than config/ensembl_gene-ensembl_transcript/config.yaml # File output/tsv/ensembl_gene-ensembl_transcript.tsv has no timestamp file -# File output/tsv/ensembl_gene-ensembl_transcript.tsv is created 7.285007939338612 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ensembl_transcript.tsv is created 6.777333646189896 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ensembl_transcript/config.yaml => output/tsv/ensembl_gene-ensembl_transcript.tsv -< 2024-11-16T03:44:05 ensembl_gene-ensembl_transcript +< 2024-11-22T22:25:33 ensembl_gene-ensembl_transcript togoid-config config/ensembl_gene-ensembl_transcript update # Success: output/tsv/ensembl_gene-ensembl_transcript.tsv is updated -> 2024-11-16T03:46:11 ensembl_gene-ensembl_transcript +> 2024-11-22T22:27:32 ensembl_gene-ensembl_transcript Rule for TSV (output/tsv/ensembl_gene-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:46:11 +0900 +timestamp: 2024-11-22 22:27:31 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-16 03:46:11 +0900) -latest-prerequisite time: 2024-11-16 03:46:11 +0900 +--prepare:ensembl (2024-11-22 22:27:32 +0900) +latest-prerequisite time: 2024-11-22 22:27:32 +0900 ................................ ### Update TSV for ensembl_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-hgnc.tsv is newer than config/ensembl_gene-hgnc/config.yaml # File output/tsv/ensembl_gene-hgnc.tsv has no timestamp file -# File output/tsv/ensembl_gene-hgnc.tsv is created 7.286461104771551 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-hgnc.tsv is created 6.778705616416077 days ago (will be updated when >5 days) ## Update config/ensembl_gene-hgnc/config.yaml => output/tsv/ensembl_gene-hgnc.tsv -< 2024-11-16T03:46:11 ensembl_gene-hgnc +< 2024-11-22T22:27:32 ensembl_gene-hgnc togoid-config config/ensembl_gene-hgnc update # Success: output/tsv/ensembl_gene-hgnc.tsv is updated -> 2024-11-16T03:46:11 ensembl_gene-hgnc +> 2024-11-22T22:27:32 ensembl_gene-hgnc Rule for TSV (output/tsv/ensembl_gene-hgnc.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:46:11 +0900 +timestamp: 2024-11-22 22:27:32 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-16 03:46:11 +0900) -latest-prerequisite time: 2024-11-16 03:46:11 +0900 +--prepare:ensembl (2024-11-22 22:27:32 +0900) +latest-prerequisite time: 2024-11-22 22:27:32 +0900 ................................ ### Update TSV for ensembl_gene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ncbigene.tsv is newer than config/ensembl_gene-ncbigene/config.yaml # File output/tsv/ensembl_gene-ncbigene.tsv has no timestamp file -# File output/tsv/ensembl_gene-ncbigene.tsv is created 7.284891291475694 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ncbigene.tsv is created 6.777358451308669 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ncbigene/config.yaml => output/tsv/ensembl_gene-ncbigene.tsv -< 2024-11-16T03:46:11 ensembl_gene-ncbigene +< 2024-11-22T22:27:32 ensembl_gene-ncbigene togoid-config config/ensembl_gene-ncbigene update Warning: Failed to retrieve taxon:8840 in loop_count:1 Warning: Failed to retrieve taxon:9771 in loop_count:1 @@ -1339,25 +1334,25 @@ Warning: Failed to retrieve taxon:99837 in loop_count:1 Warning: Failed to retrieve taxon:37032 in loop_count:1 Warning: Failed to retrieve taxon:181631 in loop_count:1 # Success: output/tsv/ensembl_gene-ncbigene.tsv is updated -> 2024-11-16T03:48:08 ensembl_gene-ncbigene +> 2024-11-22T22:29:27 ensembl_gene-ncbigene Rule for TSV (output/tsv/ensembl_gene-ncbigene.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:48:08 +0900 +timestamp: 2024-11-22 22:29:27 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-16 03:48:08 +0900) -latest-prerequisite time: 2024-11-16 03:48:08 +0900 +--prepare:ensembl (2024-11-22 22:29:27 +0900) +latest-prerequisite time: 2024-11-22 22:29:27 +0900 ................................ ### Update TSV for ensembl_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-uniprot.tsv is newer than config/ensembl_gene-uniprot/config.yaml # File output/tsv/ensembl_gene-uniprot.tsv has no timestamp file -# File output/tsv/ensembl_gene-uniprot.tsv is created 7.285270556128322 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-uniprot.tsv is created 6.777733178044432 days ago (will be updated when >5 days) ## Update config/ensembl_gene-uniprot/config.yaml => output/tsv/ensembl_gene-uniprot.tsv -< 2024-11-16T03:48:08 ensembl_gene-uniprot +< 2024-11-22T22:29:27 ensembl_gene-uniprot togoid-config config/ensembl_gene-uniprot update Warning: Failed to retrieve taxon:9771 in loop_count:1 Warning: Failed to retrieve taxon:8823 in loop_count:1 @@ -1416,109 +1411,109 @@ Warning: Failed to retrieve taxon:37032 in loop_count:1 Warning: Failed to retrieve taxon:181631 in loop_count:1 Warning: Failed to retrieve taxon:9999 in loop_count:1 # Success: output/tsv/ensembl_gene-uniprot.tsv is updated -> 2024-11-16T03:49:31 ensembl_gene-uniprot +> 2024-11-22T22:30:48 ensembl_gene-uniprot Rule for TSV (output/tsv/ensembl_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:49:31 +0900 +timestamp: 2024-11-22 22:30:48 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-16 03:49:31 +0900) -latest-prerequisite time: 2024-11-16 03:49:31 +0900 +--prepare:ensembl (2024-11-22 22:30:48 +0900) +latest-prerequisite time: 2024-11-22 22:30:48 +0900 ................................ ### Update TSV for ensembl_protein-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_protein-ensembl_transcript.tsv is newer than config/ensembl_protein-ensembl_transcript/config.yaml # File output/tsv/ensembl_protein-ensembl_transcript.tsv has no timestamp file -# File output/tsv/ensembl_protein-ensembl_transcript.tsv is created 7.284466199388646 days ago (will be updated when >5 days) +# File output/tsv/ensembl_protein-ensembl_transcript.tsv is created 6.777333747240892 days ago (will be updated when >5 days) ## Update config/ensembl_protein-ensembl_transcript/config.yaml => output/tsv/ensembl_protein-ensembl_transcript.tsv -< 2024-11-16T03:49:31 ensembl_protein-ensembl_transcript +< 2024-11-22T22:30:48 ensembl_protein-ensembl_transcript togoid-config config/ensembl_protein-ensembl_transcript update # Success: output/tsv/ensembl_protein-ensembl_transcript.tsv is updated -> 2024-11-16T03:51:26 ensembl_protein-ensembl_transcript +> 2024-11-22T22:32:42 ensembl_protein-ensembl_transcript Rule for TSV (output/tsv/ensembl_protein-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/ensembl_protein-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:51:26 +0900 +timestamp: 2024-11-22 22:32:42 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-16 03:51:26 +0900) -latest-prerequisite time: 2024-11-16 03:51:26 +0900 +--prepare:ensembl (2024-11-22 22:32:42 +0900) +latest-prerequisite time: 2024-11-22 22:32:42 +0900 ................................ ### Update TSV for ensembl_transcript-affy_probeset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-affy_probeset.tsv is newer than config/ensembl_transcript-affy_probeset/config.yaml # File output/tsv/ensembl_transcript-affy_probeset.tsv has no timestamp file -# File output/tsv/ensembl_transcript-affy_probeset.tsv is created 7.285163761906516 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-affy_probeset.tsv is created 6.778022157002997 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-affy_probeset/config.yaml => output/tsv/ensembl_transcript-affy_probeset.tsv -< 2024-11-16T03:51:26 ensembl_transcript-affy_probeset +< 2024-11-22T22:32:42 ensembl_transcript-affy_probeset togoid-config config/ensembl_transcript-affy_probeset update # Success: output/tsv/ensembl_transcript-affy_probeset.tsv is updated -> 2024-11-16T03:52:21 ensembl_transcript-affy_probeset +> 2024-11-22T22:33:34 ensembl_transcript-affy_probeset Rule for TSV (output/tsv/ensembl_transcript-affy_probeset.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-affy_probeset.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:52:21 +0900 +timestamp: 2024-11-22 22:33:34 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-16 03:52:21 +0900) -latest-prerequisite time: 2024-11-16 03:52:21 +0900 +--prepare:ensembl (2024-11-22 22:33:34 +0900) +latest-prerequisite time: 2024-11-22 22:33:34 +0900 ................................ ### Update TSV for ensembl_transcript-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-go.tsv is newer than config/ensembl_transcript-go/config.yaml # File output/tsv/ensembl_transcript-go.tsv has no timestamp file -# File output/tsv/ensembl_transcript-go.tsv is created 7.282770364068703 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-go.tsv is created 6.775809647514062 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-go/config.yaml => output/tsv/ensembl_transcript-go.tsv -< 2024-11-16T03:52:21 ensembl_transcript-go +< 2024-11-22T22:33:34 ensembl_transcript-go togoid-config config/ensembl_transcript-go update # Success: output/tsv/ensembl_transcript-go.tsv is updated -> 2024-11-16T03:56:24 ensembl_transcript-go +> 2024-11-22T22:37:25 ensembl_transcript-go Rule for TSV (output/tsv/ensembl_transcript-go.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:56:24 +0900 +timestamp: 2024-11-22 22:37:25 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-16 03:56:24 +0900) -latest-prerequisite time: 2024-11-16 03:56:24 +0900 +--prepare:ensembl (2024-11-22 22:37:25 +0900) +latest-prerequisite time: 2024-11-22 22:37:25 +0900 ................................ ### Update TSV for ensembl_transcript-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-hgnc.tsv is newer than config/ensembl_transcript-hgnc/config.yaml # File output/tsv/ensembl_transcript-hgnc.tsv has no timestamp file -# File output/tsv/ensembl_transcript-hgnc.tsv is created 7.285570704499305 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-hgnc.tsv is created 6.778470711296181 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-hgnc/config.yaml => output/tsv/ensembl_transcript-hgnc.tsv -< 2024-11-16T03:56:24 ensembl_transcript-hgnc +< 2024-11-22T22:37:25 ensembl_transcript-hgnc togoid-config config/ensembl_transcript-hgnc update # Success: output/tsv/ensembl_transcript-hgnc.tsv is updated -> 2024-11-16T03:56:25 ensembl_transcript-hgnc +> 2024-11-22T22:37:26 ensembl_transcript-hgnc Rule for TSV (output/tsv/ensembl_transcript-hgnc.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:56:25 +0900 +timestamp: 2024-11-22 22:37:26 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-16 03:56:25 +0900) -latest-prerequisite time: 2024-11-16 03:56:25 +0900 +--prepare:ensembl (2024-11-22 22:37:26 +0900) +latest-prerequisite time: 2024-11-22 22:37:26 +0900 ................................ ### Update TSV for ensembl_transcript-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-refseq_rna.tsv is newer than config/ensembl_transcript-refseq_rna/config.yaml # File output/tsv/ensembl_transcript-refseq_rna.tsv has no timestamp file -# File output/tsv/ensembl_transcript-refseq_rna.tsv is created 7.283099399135336 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-refseq_rna.tsv is created 6.776161715185695 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-refseq_rna/config.yaml => output/tsv/ensembl_transcript-refseq_rna.tsv -< 2024-11-16T03:56:25 ensembl_transcript-refseq_rna +< 2024-11-22T22:37:26 ensembl_transcript-refseq_rna togoid-config config/ensembl_transcript-refseq_rna update Warning: Failed to retrieve taxon:8840 in loop_count:1 Warning: Failed to retrieve taxon:9771 in loop_count:1 @@ -1589,73 +1584,73 @@ Warning: Failed to retrieve taxon:99837 in loop_count:1 Warning: Failed to retrieve taxon:181631 in loop_count:1 Warning: Failed to retrieve taxon:99883 in loop_count:1 # Success: output/tsv/ensembl_transcript-refseq_rna.tsv is updated -> 2024-11-16T03:59:45 ensembl_transcript-refseq_rna +> 2024-11-22T22:40:42 ensembl_transcript-refseq_rna Rule for TSV (output/tsv/ensembl_transcript-refseq_rna.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-refseq_rna.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 03:59:45 +0900 +timestamp: 2024-11-22 22:40:42 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-16 03:59:45 +0900) -latest-prerequisite time: 2024-11-16 03:59:45 +0900 +--prepare:ensembl (2024-11-22 22:40:42 +0900) +latest-prerequisite time: 2024-11-22 22:40:42 +0900 ................................ ### Update TSV for gea-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/gea-bioproject.tsv is newer than config/gea-bioproject/config.yaml # File output/tsv/gea-bioproject.tsv has no timestamp file -# File output/tsv/gea-bioproject.tsv is created 7.285412696616158 days ago (will be updated when >5 days) +# File output/tsv/gea-bioproject.tsv is created 6.778426644051204 days ago (will be updated when >5 days) ## Update config/gea-bioproject/config.yaml => output/tsv/gea-bioproject.tsv -< 2024-11-16T03:59:45 gea-bioproject +< 2024-11-22T22:40:42 gea-bioproject togoid-config config/gea-bioproject update # Success: output/tsv/gea-bioproject.tsv is updated -> 2024-11-16T03:59:46 gea-bioproject +> 2024-11-22T22:40:42 gea-bioproject Rule for TSV (output/tsv/gea-bioproject.tsv) ------------------------------ Investigating output/tsv/gea-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:59:46 +0900 +timestamp: 2024-11-22 22:40:42 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for gea-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/gea-biosample.tsv is newer than config/gea-biosample/config.yaml # File output/tsv/gea-biosample.tsv has no timestamp file -# File output/tsv/gea-biosample.tsv is created 7.285413070293797 days ago (will be updated when >5 days) +# File output/tsv/gea-biosample.tsv is created 6.778426572638889 days ago (will be updated when >5 days) ## Update config/gea-biosample/config.yaml => output/tsv/gea-biosample.tsv -< 2024-11-16T03:59:46 gea-biosample +< 2024-11-22T22:40:42 gea-biosample togoid-config config/gea-biosample update # Success: output/tsv/gea-biosample.tsv is updated -> 2024-11-16T03:59:46 gea-biosample +> 2024-11-22T22:40:43 gea-biosample Rule for TSV (output/tsv/gea-biosample.tsv) ------------------------------ Investigating output/tsv/gea-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 03:59:46 +0900 +timestamp: 2024-11-22 22:40:43 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for glycomotif-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glycomotif-glytoucan.tsv is newer than config/glycomotif-glytoucan/config.yaml # File output/tsv/glycomotif-glytoucan.tsv has no timestamp file -# File output/tsv/glycomotif-glytoucan.tsv is created 91.2726014060048 days ago (will be updated when >5 days) +# File output/tsv/glycomotif-glytoucan.tsv is created 98.05103828475077 days ago (will be updated when >5 days) ## Update config/glycomotif-glytoucan/config.yaml => output/tsv/glycomotif-glytoucan.tsv -< 2024-11-16T03:59:46 glycomotif-glytoucan +< 2024-11-22T22:40:43 glycomotif-glytoucan togoid-config config/glycomotif-glytoucan update -Error: HTTP Error 500: Internal Server Error: https://api.alpha.glycosmos.org/partialmatch?wurcs=WURCS%3D2.0%2F4%2C10%2C9%2F%5Ba2122h-1b_1-5%5D%5Ba2112h-1b_1-5%5D%5BAad21122h-2a_2-6_5%2ANCC%2F3%3DO%5D%5Ba2112h-1b_1-5_2%2ANCC%2F3%3DO%5D%2F1-2-3-3-3-4-2-3-3-3%2Fa4-b1_b3-c2_b4-f1_c8-d2_d8-e2_f3-g1_f6-j2_g3-h2_h8-i2&rootnode=true G14091MR +Error: HTTP Error 500: Internal Server Error: https://api.alpha.glycosmos.org/partialmatch?wurcs=WURCS%3D2.0%2F4%2C11%2C10%2F%5Ba2122h-1b_1-5%5D%5Ba2112h-1b_1-5%5D%5Ba2122h-1b_1-5_2%2ANCC%2F3%3DO%5D%5Ba1221m-1a_1-5%5D%2F1-2-3-2-3-2-3-4-2-3-2%2Fa4-b1_b3-c1_c4-d1_d3-e1_e4-f1_f3-g1_g3-h1_g4-i1_i3-j1_j4-k1&rootnode=true G64227KZ # Error: output/tsv/glycomotif-glytoucan.tsv new file size per old 0 / 2804382 = 0.0 < 0.5 # Error: Failed to create output/tsv/glycomotif-glytoucan.tsv or created file was empty # Failure: output/tsv/glycomotif-glytoucan.tsv is not updated -> 2024-11-16T04:00:24 glycomotif-glytoucan +> 2024-11-22T22:41:15 glycomotif-glytoucan Rule for TSV (output/tsv/glycomotif-glytoucan.tsv) ------------------------------ Investigating output/tsv/glycomotif-glytoucan.tsv @@ -1664,19 +1659,19 @@ task needed: true timestamp: 2024-08-16 21:27:13 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for glytoucan-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-doid.tsv is newer than config/glytoucan-doid/config.yaml # File output/tsv/glytoucan-doid.tsv is older than input/glytoucan/download.lock ## Update config/glytoucan-doid/config.yaml => output/tsv/glytoucan-doid.tsv -< 2024-11-16T04:00:24 glytoucan-doid +< 2024-11-22T22:41:15 glytoucan-doid togoid-config config/glytoucan-doid update # Error: output/tsv/glytoucan-doid.tsv new file size per old 1538 / 4376 = 0.35146252285191953 < 0.5 # Failure: output/tsv/glytoucan-doid.tsv is not updated -> 2024-11-16T04:00:31 glytoucan-doid +> 2024-11-22T22:41:24 glytoucan-doid Rule for TSV (output/tsv/glytoucan-doid.tsv) ------------------------------ Investigating output/tsv/glytoucan-doid.tsv @@ -1685,58 +1680,58 @@ task needed: true timestamp: 2024-03-22 20:42:15 +0900 pre-requisites: --output/tsv/ () ---prepare:glytoucan (2024-11-16 04:00:31 +0900) -latest-prerequisite time: 2024-11-16 04:00:31 +0900 +--prepare:glytoucan (2024-11-22 22:41:24 +0900) +latest-prerequisite time: 2024-11-22 22:41:24 +0900 ................................ ### Update TSV for glytoucan-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-ncbigene.tsv is newer than config/glytoucan-ncbigene/config.yaml # File output/tsv/glytoucan-ncbigene.tsv is older than input/glytoucan/download.lock ## Update config/glytoucan-ncbigene/config.yaml => output/tsv/glytoucan-ncbigene.tsv -< 2024-11-16T04:00:31 glytoucan-ncbigene +< 2024-11-22T22:41:24 glytoucan-ncbigene togoid-config config/glytoucan-ncbigene update # Success: output/tsv/glytoucan-ncbigene.tsv is updated -> 2024-11-16T04:00:32 glytoucan-ncbigene +> 2024-11-22T22:41:24 glytoucan-ncbigene Rule for TSV (output/tsv/glytoucan-ncbigene.tsv) ------------------------------ Investigating output/tsv/glytoucan-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:00:32 +0900 +timestamp: 2024-11-22 22:41:24 +0900 pre-requisites: --output/tsv/ () ---prepare:glytoucan (2024-11-16 04:00:32 +0900) -latest-prerequisite time: 2024-11-16 04:00:32 +0900 +--prepare:glytoucan (2024-11-22 22:41:24 +0900) +latest-prerequisite time: 2024-11-22 22:41:24 +0900 ................................ ### Update TSV for glytoucan-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-uniprot.tsv is newer than config/glytoucan-uniprot/config.yaml # File output/tsv/glytoucan-uniprot.tsv is older than input/glytoucan/download.lock ## Update config/glytoucan-uniprot/config.yaml => output/tsv/glytoucan-uniprot.tsv -< 2024-11-16T04:00:32 glytoucan-uniprot +< 2024-11-22T22:41:24 glytoucan-uniprot togoid-config config/glytoucan-uniprot update # Success: output/tsv/glytoucan-uniprot.tsv is updated -> 2024-11-16T04:00:33 glytoucan-uniprot +> 2024-11-22T22:41:26 glytoucan-uniprot Rule for TSV (output/tsv/glytoucan-uniprot.tsv) ------------------------------ Investigating output/tsv/glytoucan-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:00:33 +0900 +timestamp: 2024-11-22 22:41:26 +0900 pre-requisites: --output/tsv/ () ---prepare:glytoucan (2024-11-16 04:00:33 +0900) -latest-prerequisite time: 2024-11-16 04:00:33 +0900 +--prepare:glytoucan (2024-11-22 22:41:26 +0900) +latest-prerequisite time: 2024-11-22 22:41:26 +0900 ................................ ### Update TSV for hgnc-ccds if check_tsv_filesize false or check_config_timestamp true or check_tsv_timestamp true # File output/tsv/hgnc-ccds.tsv is older than config/hgnc-ccds/config.yaml ## Update config/hgnc-ccds/config.yaml => output/tsv/hgnc-ccds.tsv -< 2024-11-16T04:00:33 hgnc-ccds +< 2024-11-22T22:41:26 hgnc-ccds togoid-config config/hgnc-ccds update # Error: output/tsv/hgnc-ccds.tsv new file size per old 252491 / 544502 = 0.46370995882476096 < 0.5 # Failure: output/tsv/hgnc-ccds.tsv is not updated -> 2024-11-16T04:00:34 hgnc-ccds +> 2024-11-22T22:41:27 hgnc-ccds Rule for TSV (output/tsv/hgnc-ccds.tsv) ------------------------------ Investigating output/tsv/hgnc-ccds.tsv @@ -1745,232 +1740,288 @@ task needed: true timestamp: 2024-08-16 21:27:23 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:27 +0900) +latest-prerequisite time: 2024-11-22 22:41:27 +0900 ................................ -### Update TSV for hgnc-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ec.tsv is newer than config/hgnc-ec/config.yaml -# File output/tsv/hgnc-ec.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-ec.tsv +# File output/tsv/hgnc-ec.tsv is older than input/hgnc/download.lock +## Update config/hgnc-ec/config.yaml => output/tsv/hgnc-ec.tsv +< 2024-11-22T22:41:27 hgnc-ec +togoid-config config/hgnc-ec update +# Success: output/tsv/hgnc-ec.tsv is updated +> 2024-11-22T22:41:27 hgnc-ec Rule for TSV (output/tsv/hgnc-ec.tsv) ------------------------------ Investigating output/tsv/hgnc-ec.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-25 21:03:33 +0900 +timestamp: 2024-11-22 22:41:27 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:27 +0900) +latest-prerequisite time: 2024-11-22 22:41:27 +0900 ................................ -### Update TSV for hgnc-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ensembl_gene.tsv is newer than config/hgnc-ensembl_gene/config.yaml -# File output/tsv/hgnc-ensembl_gene.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-ensembl_gene.tsv +# File output/tsv/hgnc-ensembl_gene.tsv is older than input/hgnc/download.lock +## Update config/hgnc-ensembl_gene/config.yaml => output/tsv/hgnc-ensembl_gene.tsv +< 2024-11-22T22:41:27 hgnc-ensembl_gene +togoid-config config/hgnc-ensembl_gene update +# Success: output/tsv/hgnc-ensembl_gene.tsv is updated +> 2024-11-22T22:41:28 hgnc-ensembl_gene Rule for TSV (output/tsv/hgnc-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/hgnc-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-25 21:03:34 +0900 +timestamp: 2024-11-22 22:41:28 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:28 +0900) +latest-prerequisite time: 2024-11-22 22:41:28 +0900 ................................ -### Update TSV for hgnc-hgnc_symbol if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-hgnc_symbol if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-hgnc_symbol.tsv is newer than config/hgnc-hgnc_symbol/config.yaml -# File output/tsv/hgnc-hgnc_symbol.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-hgnc_symbol.tsv +# File output/tsv/hgnc-hgnc_symbol.tsv is older than input/hgnc/download.lock +## Update config/hgnc-hgnc_symbol/config.yaml => output/tsv/hgnc-hgnc_symbol.tsv +< 2024-11-22T22:41:28 hgnc-hgnc_symbol +togoid-config config/hgnc-hgnc_symbol update +# Success: output/tsv/hgnc-hgnc_symbol.tsv is updated +> 2024-11-22T22:41:28 hgnc-hgnc_symbol Rule for TSV (output/tsv/hgnc-hgnc_symbol.tsv) ------------------------------ Investigating output/tsv/hgnc-hgnc_symbol.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-25 21:03:34 +0900 +timestamp: 2024-11-22 22:41:28 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:28 +0900) +latest-prerequisite time: 2024-11-22 22:41:28 +0900 ................................ -### Update TSV for hgnc-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-insdc.tsv is newer than config/hgnc-insdc/config.yaml -# File output/tsv/hgnc-insdc.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-insdc.tsv +# File output/tsv/hgnc-insdc.tsv is older than input/hgnc/download.lock +## Update config/hgnc-insdc/config.yaml => output/tsv/hgnc-insdc.tsv +< 2024-11-22T22:41:28 hgnc-insdc +togoid-config config/hgnc-insdc update +# Success: output/tsv/hgnc-insdc.tsv is updated +> 2024-11-22T22:41:29 hgnc-insdc Rule for TSV (output/tsv/hgnc-insdc.tsv) ------------------------------ Investigating output/tsv/hgnc-insdc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-25 21:03:35 +0900 +timestamp: 2024-11-22 22:41:29 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:29 +0900) +latest-prerequisite time: 2024-11-22 22:41:29 +0900 ................................ -### Update TSV for hgnc-lrg if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-lrg if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-lrg.tsv is newer than config/hgnc-lrg/config.yaml -# File output/tsv/hgnc-lrg.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-lrg.tsv +# File output/tsv/hgnc-lrg.tsv is older than input/hgnc/download.lock +## Update config/hgnc-lrg/config.yaml => output/tsv/hgnc-lrg.tsv +< 2024-11-22T22:41:29 hgnc-lrg +togoid-config config/hgnc-lrg update +# Success: output/tsv/hgnc-lrg.tsv is updated +> 2024-11-22T22:41:29 hgnc-lrg Rule for TSV (output/tsv/hgnc-lrg.tsv) ------------------------------ Investigating output/tsv/hgnc-lrg.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-25 21:03:35 +0900 +timestamp: 2024-11-22 22:41:29 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:29 +0900) +latest-prerequisite time: 2024-11-22 22:41:29 +0900 ................................ -### Update TSV for hgnc-mgi_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-mgi_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-mgi_gene.tsv is newer than config/hgnc-mgi_gene/config.yaml -# File output/tsv/hgnc-mgi_gene.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-mgi_gene.tsv +# File output/tsv/hgnc-mgi_gene.tsv is older than input/hgnc/download.lock +## Update config/hgnc-mgi_gene/config.yaml => output/tsv/hgnc-mgi_gene.tsv +< 2024-11-22T22:41:29 hgnc-mgi_gene +togoid-config config/hgnc-mgi_gene update +# Success: output/tsv/hgnc-mgi_gene.tsv is updated +> 2024-11-22T22:41:30 hgnc-mgi_gene Rule for TSV (output/tsv/hgnc-mgi_gene.tsv) ------------------------------ Investigating output/tsv/hgnc-mgi_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-25 21:03:36 +0900 +timestamp: 2024-11-22 22:41:30 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:30 +0900) +latest-prerequisite time: 2024-11-22 22:41:30 +0900 ................................ -### Update TSV for hgnc-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-mirbase.tsv is newer than config/hgnc-mirbase/config.yaml -# File output/tsv/hgnc-mirbase.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-mirbase.tsv +# File output/tsv/hgnc-mirbase.tsv is older than input/hgnc/download.lock +## Update config/hgnc-mirbase/config.yaml => output/tsv/hgnc-mirbase.tsv +< 2024-11-22T22:41:30 hgnc-mirbase +togoid-config config/hgnc-mirbase update +# Success: output/tsv/hgnc-mirbase.tsv is updated +> 2024-11-22T22:41:30 hgnc-mirbase Rule for TSV (output/tsv/hgnc-mirbase.tsv) ------------------------------ Investigating output/tsv/hgnc-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-25 21:03:37 +0900 +timestamp: 2024-11-22 22:41:30 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:30 +0900) +latest-prerequisite time: 2024-11-22 22:41:30 +0900 ................................ -### Update TSV for hgnc-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ncbigene.tsv is newer than config/hgnc-ncbigene/config.yaml -# File output/tsv/hgnc-ncbigene.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-ncbigene.tsv +# File output/tsv/hgnc-ncbigene.tsv is older than input/hgnc/download.lock +## Update config/hgnc-ncbigene/config.yaml => output/tsv/hgnc-ncbigene.tsv +< 2024-11-22T22:41:30 hgnc-ncbigene +togoid-config config/hgnc-ncbigene update +# Success: output/tsv/hgnc-ncbigene.tsv is updated +> 2024-11-22T22:41:31 hgnc-ncbigene Rule for TSV (output/tsv/hgnc-ncbigene.tsv) ------------------------------ Investigating output/tsv/hgnc-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-25 21:03:37 +0900 +timestamp: 2024-11-22 22:41:31 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:31 +0900) +latest-prerequisite time: 2024-11-22 22:41:31 +0900 ................................ -### Update TSV for hgnc-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-omim_gene.tsv is newer than config/hgnc-omim_gene/config.yaml -# File output/tsv/hgnc-omim_gene.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-omim_gene.tsv +# File output/tsv/hgnc-omim_gene.tsv is older than input/hgnc/download.lock +## Update config/hgnc-omim_gene/config.yaml => output/tsv/hgnc-omim_gene.tsv +< 2024-11-22T22:41:31 hgnc-omim_gene +togoid-config config/hgnc-omim_gene update +# Success: output/tsv/hgnc-omim_gene.tsv is updated +> 2024-11-22T22:41:31 hgnc-omim_gene Rule for TSV (output/tsv/hgnc-omim_gene.tsv) ------------------------------ Investigating output/tsv/hgnc-omim_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-25 21:03:38 +0900 +timestamp: 2024-11-22 22:41:31 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:31 +0900) +latest-prerequisite time: 2024-11-22 22:41:31 +0900 ................................ -### Update TSV for hgnc-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-pubmed.tsv is newer than config/hgnc-pubmed/config.yaml -# File output/tsv/hgnc-pubmed.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-pubmed.tsv +# File output/tsv/hgnc-pubmed.tsv is older than input/hgnc/download.lock +## Update config/hgnc-pubmed/config.yaml => output/tsv/hgnc-pubmed.tsv +< 2024-11-22T22:41:31 hgnc-pubmed +togoid-config config/hgnc-pubmed update +# Success: output/tsv/hgnc-pubmed.tsv is updated +> 2024-11-22T22:41:32 hgnc-pubmed Rule for TSV (output/tsv/hgnc-pubmed.tsv) ------------------------------ Investigating output/tsv/hgnc-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-25 21:03:38 +0900 +timestamp: 2024-11-22 22:41:32 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:32 +0900) +latest-prerequisite time: 2024-11-22 22:41:32 +0900 ................................ -### Update TSV for hgnc-refseq_genomic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-refseq_genomic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-refseq_genomic.tsv is newer than config/hgnc-refseq_genomic/config.yaml -# File output/tsv/hgnc-refseq_genomic.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-refseq_genomic.tsv +# File output/tsv/hgnc-refseq_genomic.tsv is older than input/hgnc/download.lock +## Update config/hgnc-refseq_genomic/config.yaml => output/tsv/hgnc-refseq_genomic.tsv +< 2024-11-22T22:41:32 hgnc-refseq_genomic +togoid-config config/hgnc-refseq_genomic update +# Success: output/tsv/hgnc-refseq_genomic.tsv is updated +> 2024-11-22T22:41:33 hgnc-refseq_genomic Rule for TSV (output/tsv/hgnc-refseq_genomic.tsv) ------------------------------ Investigating output/tsv/hgnc-refseq_genomic.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-25 21:03:39 +0900 +timestamp: 2024-11-22 22:41:33 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:33 +0900) +latest-prerequisite time: 2024-11-22 22:41:33 +0900 ................................ -### Update TSV for hgnc-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-refseq_rna.tsv is newer than config/hgnc-refseq_rna/config.yaml -# File output/tsv/hgnc-refseq_rna.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-refseq_rna.tsv +# File output/tsv/hgnc-refseq_rna.tsv is older than input/hgnc/download.lock +## Update config/hgnc-refseq_rna/config.yaml => output/tsv/hgnc-refseq_rna.tsv +< 2024-11-22T22:41:33 hgnc-refseq_rna +togoid-config config/hgnc-refseq_rna update +# Success: output/tsv/hgnc-refseq_rna.tsv is updated +> 2024-11-22T22:41:33 hgnc-refseq_rna Rule for TSV (output/tsv/hgnc-refseq_rna.tsv) ------------------------------ Investigating output/tsv/hgnc-refseq_rna.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-25 21:03:39 +0900 +timestamp: 2024-11-22 22:41:33 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:33 +0900) +latest-prerequisite time: 2024-11-22 22:41:33 +0900 ................................ -### Update TSV for hgnc-rgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-rgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-rgd.tsv is newer than config/hgnc-rgd/config.yaml -# File output/tsv/hgnc-rgd.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-rgd.tsv +# File output/tsv/hgnc-rgd.tsv is older than input/hgnc/download.lock +## Update config/hgnc-rgd/config.yaml => output/tsv/hgnc-rgd.tsv +< 2024-11-22T22:41:33 hgnc-rgd +togoid-config config/hgnc-rgd update +# Success: output/tsv/hgnc-rgd.tsv is updated +> 2024-11-22T22:41:34 hgnc-rgd Rule for TSV (output/tsv/hgnc-rgd.tsv) ------------------------------ Investigating output/tsv/hgnc-rgd.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-25 21:03:40 +0900 +timestamp: 2024-11-22 22:41:34 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:34 +0900) +latest-prerequisite time: 2024-11-22 22:41:34 +0900 ................................ -### Update TSV for hgnc-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-uniprot.tsv is newer than config/hgnc-uniprot/config.yaml -# File output/tsv/hgnc-uniprot.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-uniprot.tsv +# File output/tsv/hgnc-uniprot.tsv is older than input/hgnc/download.lock +## Update config/hgnc-uniprot/config.yaml => output/tsv/hgnc-uniprot.tsv +< 2024-11-22T22:41:34 hgnc-uniprot +togoid-config config/hgnc-uniprot update +# Success: output/tsv/hgnc-uniprot.tsv is updated +> 2024-11-22T22:41:34 hgnc-uniprot Rule for TSV (output/tsv/hgnc-uniprot.tsv) ------------------------------ Investigating output/tsv/hgnc-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-19 13:28:13 +0900 +timestamp: 2024-11-22 22:41:34 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hgnc (2024-11-22 22:41:34 +0900) +latest-prerequisite time: 2024-11-22 22:41:34 +0900 ................................ ### Update TSV for hmdb-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1985,8 +2036,8 @@ task needed: true timestamp: 2023-07-03 13:03:28 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hmdb (2024-11-22 22:41:34 +0900) +latest-prerequisite time: 2024-11-22 22:41:34 +0900 ................................ ### Update TSV for hmdb-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2001,8 +2052,8 @@ task needed: true timestamp: 2023-07-03 13:03:51 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hmdb (2024-11-22 22:41:34 +0900) +latest-prerequisite time: 2024-11-22 22:41:34 +0900 ................................ ### Update TSV for hmdb-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2017,8 +2068,8 @@ task needed: true timestamp: 2024-01-20 02:10:47 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hmdb (2024-11-22 22:41:34 +0900) +latest-prerequisite time: 2024-11-22 22:41:34 +0900 ................................ ### Update TSV for hmdb-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2033,8 +2084,8 @@ task needed: true timestamp: 2023-07-03 13:06:27 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:hmdb (2024-11-22 22:41:34 +0900) +latest-prerequisite time: 2024-11-22 22:41:34 +0900 ................................ ### Update TSV for homologene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2049,29 +2100,29 @@ task needed: true timestamp: 2023-06-02 19:58:16 +0900 pre-requisites: --output/tsv/ () ---prepare:homologene (2024-11-16 04:00:34 +0900) -latest-prerequisite time: 2024-11-16 04:00:34 +0900 +--prepare:homologene (2024-11-22 22:41:34 +0900) +latest-prerequisite time: 2024-11-22 22:41:34 +0900 ................................ ### Update TSV for hp_inheritance-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hp_inheritance-omim_phenotype.tsv is newer than config/hp_inheritance-omim_phenotype/config.yaml # File output/tsv/hp_inheritance-omim_phenotype.tsv has no timestamp file -# File output/tsv/hp_inheritance-omim_phenotype.tsv is created 7.285468056680404 days ago (will be updated when >5 days) +# File output/tsv/hp_inheritance-omim_phenotype.tsv is created 6.778464564551621 days ago (will be updated when >5 days) ## Update config/hp_inheritance-omim_phenotype/config.yaml => output/tsv/hp_inheritance-omim_phenotype.tsv -< 2024-11-16T04:00:34 hp_inheritance-omim_phenotype +< 2024-11-22T22:41:34 hp_inheritance-omim_phenotype togoid-config config/hp_inheritance-omim_phenotype update # Success: output/tsv/hp_inheritance-omim_phenotype.tsv is updated -> 2024-11-16T04:00:35 hp_inheritance-omim_phenotype +> 2024-11-22T22:41:35 hp_inheritance-omim_phenotype Rule for TSV (output/tsv/hp_inheritance-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/hp_inheritance-omim_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:00:35 +0900 +timestamp: 2024-11-22 22:41:35 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for hp_phenotype-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2086,8 +2137,8 @@ task needed: true timestamp: 2024-08-16 21:27:32 +0900 pre-requisites: --output/tsv/ () ---prepare:hp_phenotype (2024-11-16 04:00:35 +0900) -latest-prerequisite time: 2024-11-16 04:00:35 +0900 +--prepare:hp_phenotype (2024-11-22 22:41:35 +0900) +latest-prerequisite time: 2024-11-22 22:41:35 +0900 ................................ ### Update TSV for hp_phenotype-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2102,92 +2153,92 @@ task needed: true timestamp: 2024-08-16 21:27:33 +0900 pre-requisites: --output/tsv/ () ---prepare:hp_phenotype (2024-11-16 04:00:35 +0900) -latest-prerequisite time: 2024-11-16 04:00:35 +0900 +--prepare:hp_phenotype (2024-11-22 22:41:35 +0900) +latest-prerequisite time: 2024-11-22 22:41:35 +0900 ................................ ### Update TSV for insdc-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc-bioproject.tsv is newer than config/insdc-bioproject/config.yaml # File output/tsv/insdc-bioproject.tsv has no timestamp file -# File output/tsv/insdc-bioproject.tsv is created 7.285206997265555 days ago (will be updated when >5 days) +# File output/tsv/insdc-bioproject.tsv is created 6.778156954874027 days ago (will be updated when >5 days) ## Update config/insdc-bioproject/config.yaml => output/tsv/insdc-bioproject.tsv -< 2024-11-16T04:00:35 insdc-bioproject +< 2024-11-22T22:41:35 insdc-bioproject togoid-config config/insdc-bioproject update # Success: output/tsv/insdc-bioproject.tsv is updated -> 2024-11-16T04:01:03 insdc-bioproject +> 2024-11-22T22:42:03 insdc-bioproject Rule for TSV (output/tsv/insdc-bioproject.tsv) ------------------------------ Investigating output/tsv/insdc-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:01:03 +0900 +timestamp: 2024-11-22 22:42:03 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for insdc-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc-biosample.tsv is newer than config/insdc-biosample/config.yaml # File output/tsv/insdc-biosample.tsv has no timestamp file -# File output/tsv/insdc-biosample.tsv is created 7.2845359288857985 days ago (will be updated when >5 days) +# File output/tsv/insdc-biosample.tsv is created 6.777488531344051 days ago (will be updated when >5 days) ## Update config/insdc-biosample/config.yaml => output/tsv/insdc-biosample.tsv -< 2024-11-16T04:01:03 insdc-biosample +< 2024-11-22T22:42:03 insdc-biosample togoid-config config/insdc-biosample update # Success: output/tsv/insdc-biosample.tsv is updated -> 2024-11-16T04:02:28 insdc-biosample +> 2024-11-22T22:43:31 insdc-biosample Rule for TSV (output/tsv/insdc-biosample.tsv) ------------------------------ Investigating output/tsv/insdc-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:02:28 +0900 +timestamp: 2024-11-22 22:43:31 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for insdc_master-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc_master-bioproject.tsv is newer than config/insdc_master-bioproject/config.yaml # File output/tsv/insdc_master-bioproject.tsv has no timestamp file -# File output/tsv/insdc_master-bioproject.tsv is created 7.285504255867338 days ago (will be updated when >5 days) +# File output/tsv/insdc_master-bioproject.tsv is created 6.7784854632629745 days ago (will be updated when >5 days) ## Update config/insdc_master-bioproject/config.yaml => output/tsv/insdc_master-bioproject.tsv -< 2024-11-16T04:02:28 insdc_master-bioproject +< 2024-11-22T22:43:31 insdc_master-bioproject togoid-config config/insdc_master-bioproject update # Success: output/tsv/insdc_master-bioproject.tsv is updated -> 2024-11-16T04:02:29 insdc_master-bioproject +> 2024-11-22T22:43:32 insdc_master-bioproject Rule for TSV (output/tsv/insdc_master-bioproject.tsv) ------------------------------ Investigating output/tsv/insdc_master-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:02:29 +0900 +timestamp: 2024-11-22 22:43:32 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for insdc_master-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc_master-biosample.tsv is newer than config/insdc_master-biosample/config.yaml # File output/tsv/insdc_master-biosample.tsv has no timestamp file -# File output/tsv/insdc_master-biosample.tsv is created 7.285503932733195 days ago (will be updated when >5 days) +# File output/tsv/insdc_master-biosample.tsv is created 6.778484922489236 days ago (will be updated when >5 days) ## Update config/insdc_master-biosample/config.yaml => output/tsv/insdc_master-biosample.tsv -< 2024-11-16T04:02:29 insdc_master-biosample +< 2024-11-22T22:43:32 insdc_master-biosample togoid-config config/insdc_master-biosample update # Success: output/tsv/insdc_master-biosample.tsv is updated -> 2024-11-16T04:02:31 insdc_master-biosample +> 2024-11-22T22:43:34 insdc_master-biosample Rule for TSV (output/tsv/insdc_master-biosample.tsv) ------------------------------ Investigating output/tsv/insdc_master-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:02:31 +0900 +timestamp: 2024-11-22 22:43:34 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for interpro-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2202,8 +2253,8 @@ task needed: true timestamp: 2024-10-06 20:21:42 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-16 04:02:31 +0900) -latest-prerequisite time: 2024-11-16 04:02:31 +0900 +--prepare:interpro (2024-11-22 22:43:34 +0900) +latest-prerequisite time: 2024-11-22 22:43:34 +0900 ................................ ### Update TSV for interpro-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2218,8 +2269,8 @@ task needed: true timestamp: 2024-10-06 20:21:44 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-16 04:02:31 +0900) -latest-prerequisite time: 2024-11-16 04:02:31 +0900 +--prepare:interpro (2024-11-22 22:43:34 +0900) +latest-prerequisite time: 2024-11-22 22:43:34 +0900 ................................ ### Update TSV for interpro-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2234,8 +2285,8 @@ task needed: true timestamp: 2024-10-06 20:21:46 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-16 04:02:31 +0900) -latest-prerequisite time: 2024-11-16 04:02:31 +0900 +--prepare:interpro (2024-11-22 22:43:34 +0900) +latest-prerequisite time: 2024-11-22 22:43:34 +0900 ................................ ### Update TSV for interpro-prosite if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2250,8 +2301,8 @@ task needed: true timestamp: 2024-10-06 20:21:47 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-16 04:02:31 +0900) -latest-prerequisite time: 2024-11-16 04:02:31 +0900 +--prepare:interpro (2024-11-22 22:43:34 +0900) +latest-prerequisite time: 2024-11-22 22:43:34 +0900 ................................ ### Update TSV for interpro-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2266,8 +2317,8 @@ task needed: true timestamp: 2024-10-06 20:21:49 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-16 04:02:31 +0900) -latest-prerequisite time: 2024-11-16 04:02:31 +0900 +--prepare:interpro (2024-11-22 22:43:34 +0900) +latest-prerequisite time: 2024-11-22 22:43:34 +0900 ................................ ### Update TSV for interpro-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2282,8 +2333,8 @@ task needed: true timestamp: 2024-10-06 20:21:51 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-16 04:02:31 +0900) -latest-prerequisite time: 2024-11-16 04:02:31 +0900 +--prepare:interpro (2024-11-22 22:43:34 +0900) +latest-prerequisite time: 2024-11-22 22:43:34 +0900 ................................ ### Update TSV for interpro-smart if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2298,8 +2349,8 @@ task needed: true timestamp: 2024-10-06 20:21:53 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-16 04:02:31 +0900) -latest-prerequisite time: 2024-11-16 04:02:31 +0900 +--prepare:interpro (2024-11-22 22:43:34 +0900) +latest-prerequisite time: 2024-11-22 22:43:34 +0900 ................................ ### Update TSV for interpro-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2314,79 +2365,79 @@ task needed: true timestamp: 2024-10-07 00:10:25 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-16 04:02:31 +0900) -latest-prerequisite time: 2024-11-16 04:02:31 +0900 +--prepare:interpro (2024-11-22 22:43:34 +0900) +latest-prerequisite time: 2024-11-22 22:43:34 +0900 ................................ ### Update TSV for jga_study-jga_dataset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-jga_dataset.tsv is newer than config/jga_study-jga_dataset/config.yaml # File output/tsv/jga_study-jga_dataset.tsv has no timestamp file -# File output/tsv/jga_study-jga_dataset.tsv is created 7.285516709452488 days ago (will be updated when >5 days) +# File output/tsv/jga_study-jga_dataset.tsv is created 6.778505033430359 days ago (will be updated when >5 days) ## Update config/jga_study-jga_dataset/config.yaml => output/tsv/jga_study-jga_dataset.tsv -< 2024-11-16T04:02:31 jga_study-jga_dataset +< 2024-11-22T22:43:34 jga_study-jga_dataset togoid-config config/jga_study-jga_dataset update # Success: output/tsv/jga_study-jga_dataset.tsv is updated -> 2024-11-16T04:02:31 jga_study-jga_dataset +> 2024-11-22T22:43:35 jga_study-jga_dataset Rule for TSV (output/tsv/jga_study-jga_dataset.tsv) ------------------------------ Investigating output/tsv/jga_study-jga_dataset.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:02:31 +0900 +timestamp: 2024-11-22 22:43:35 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for jga_study-nbdc_human_db if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-nbdc_human_db.tsv is newer than config/jga_study-nbdc_human_db/config.yaml # File output/tsv/jga_study-nbdc_human_db.tsv has no timestamp file -# File output/tsv/jga_study-nbdc_human_db.tsv is created 7.285517792623438 days ago (will be updated when >5 days) +# File output/tsv/jga_study-nbdc_human_db.tsv is created 6.7785028336430315 days ago (will be updated when >5 days) ## Update config/jga_study-nbdc_human_db/config.yaml => output/tsv/jga_study-nbdc_human_db.tsv -< 2024-11-16T04:02:31 jga_study-nbdc_human_db +< 2024-11-22T22:43:35 jga_study-nbdc_human_db togoid-config config/jga_study-nbdc_human_db update # Success: output/tsv/jga_study-nbdc_human_db.tsv is updated -> 2024-11-16T04:02:32 jga_study-nbdc_human_db +> 2024-11-22T22:43:35 jga_study-nbdc_human_db Rule for TSV (output/tsv/jga_study-nbdc_human_db.tsv) ------------------------------ Investigating output/tsv/jga_study-nbdc_human_db.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:02:32 +0900 +timestamp: 2024-11-22 22:43:35 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for jga_study-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-pubmed.tsv is newer than config/jga_study-pubmed/config.yaml # File output/tsv/jga_study-pubmed.tsv has no timestamp file -# File output/tsv/jga_study-pubmed.tsv is created 7.285519335596667 days ago (will be updated when >5 days) +# File output/tsv/jga_study-pubmed.tsv is created 6.778504543312802 days ago (will be updated when >5 days) ## Update config/jga_study-pubmed/config.yaml => output/tsv/jga_study-pubmed.tsv -< 2024-11-16T04:02:32 jga_study-pubmed +< 2024-11-22T22:43:35 jga_study-pubmed togoid-config config/jga_study-pubmed update # Success: output/tsv/jga_study-pubmed.tsv is updated -> 2024-11-16T04:02:32 jga_study-pubmed +> 2024-11-22T22:43:36 jga_study-pubmed Rule for TSV (output/tsv/jga_study-pubmed.tsv) ------------------------------ Investigating output/tsv/jga_study-pubmed.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:02:32 +0900 +timestamp: 2024-11-22 22:43:36 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for lipidmaps-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-chebi.tsv is newer than config/lipidmaps-chebi/config.yaml # File output/tsv/lipidmaps-chebi.tsv has no timestamp file -# File output/tsv/lipidmaps-chebi.tsv is created 55.98175607973549 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-chebi.tsv is created 62.760265291576665 days ago (will be updated when >5 days) ## Update config/lipidmaps-chebi/config.yaml => output/tsv/lipidmaps-chebi.tsv -< 2024-11-16T04:02:32 lipidmaps-chebi +< 2024-11-22T22:43:36 lipidmaps-chebi togoid-config config/lipidmaps-chebi update # Error: output/tsv/lipidmaps-chebi.tsv new file size per old 248 / 253350 = 0.0009788829682257747 < 0.5 # Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML @@ -2406,7 +2457,7 @@ togoid-config config/lipidmaps-chebi update # Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML problems. Please try again later.

# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML # Failure: output/tsv/lipidmaps-chebi.tsv is not updated -> 2024-11-16T04:02:35 lipidmaps-chebi +> 2024-11-22T22:43:37 lipidmaps-chebi Rule for TSV (output/tsv/lipidmaps-chebi.tsv) ------------------------------ Investigating output/tsv/lipidmaps-chebi.tsv @@ -2415,16 +2466,16 @@ task needed: true timestamp: 2024-09-21 04:28:49 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for lipidmaps-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-inchi_key.tsv is newer than config/lipidmaps-inchi_key/config.yaml # File output/tsv/lipidmaps-inchi_key.tsv has no timestamp file -# File output/tsv/lipidmaps-inchi_key.tsv is created 55.981745048063836 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-inchi_key.tsv is created 62.76024235230744 days ago (will be updated when >5 days) ## Update config/lipidmaps-inchi_key/config.yaml => output/tsv/lipidmaps-inchi_key.tsv -< 2024-11-16T04:02:35 lipidmaps-inchi_key +< 2024-11-22T22:43:37 lipidmaps-inchi_key togoid-config config/lipidmaps-inchi_key update # Error: output/tsv/lipidmaps-inchi_key.tsv new file size per old 248 / 1976727 = 0.0001254599142926666 < 0.5 # Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML @@ -2444,7 +2495,7 @@ togoid-config config/lipidmaps-inchi_key update # Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML problems. Please try again later.

# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML # Failure: output/tsv/lipidmaps-inchi_key.tsv is not updated -> 2024-11-16T04:02:37 lipidmaps-inchi_key +> 2024-11-22T22:43:39 lipidmaps-inchi_key Rule for TSV (output/tsv/lipidmaps-inchi_key.tsv) ------------------------------ Investigating output/tsv/lipidmaps-inchi_key.tsv @@ -2453,16 +2504,16 @@ task needed: true timestamp: 2024-09-21 04:28:53 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for lipidmaps-swisslipids if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-swisslipids.tsv is newer than config/lipidmaps-swisslipids/config.yaml # File output/tsv/lipidmaps-swisslipids.tsv has no timestamp file -# File output/tsv/lipidmaps-swisslipids.tsv is created 55.98172607996565 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-swisslipids.tsv is created 62.760223496436296 days ago (will be updated when >5 days) ## Update config/lipidmaps-swisslipids/config.yaml => output/tsv/lipidmaps-swisslipids.tsv -< 2024-11-16T04:02:37 lipidmaps-swisslipids +< 2024-11-22T22:43:39 lipidmaps-swisslipids togoid-config config/lipidmaps-swisslipids update # Error: output/tsv/lipidmaps-swisslipids.tsv new file size per old 248 / 284047 = 0.0008730949455547849 < 0.5 # Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML @@ -2482,7 +2533,7 @@ togoid-config config/lipidmaps-swisslipids update # Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML problems. Please try again later.

# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML # Failure: output/tsv/lipidmaps-swisslipids.tsv is not updated -> 2024-11-16T04:02:38 lipidmaps-swisslipids +> 2024-11-22T22:43:40 lipidmaps-swisslipids Rule for TSV (output/tsv/lipidmaps-swisslipids.tsv) ------------------------------ Investigating output/tsv/lipidmaps-swisslipids.tsv @@ -2491,21 +2542,21 @@ task needed: true timestamp: 2024-09-21 04:28:56 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for mbgd_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mbgd_gene-uniprot.tsv is newer than config/mbgd_gene-uniprot/config.yaml # File output/tsv/mbgd_gene-uniprot.tsv has no timestamp file -# File output/tsv/mbgd_gene-uniprot.tsv is created 28.246162391028644 days ago (will be updated when >5 days) +# File output/tsv/mbgd_gene-uniprot.tsv is created 35.02466040315127 days ago (will be updated when >5 days) ## Update config/mbgd_gene-uniprot/config.yaml => output/tsv/mbgd_gene-uniprot.tsv -< 2024-11-16T04:02:38 mbgd_gene-uniprot +< 2024-11-22T22:43:40 mbgd_gene-uniprot togoid-config config/mbgd_gene-uniprot update # Error: output/tsv/mbgd_gene-uniprot.tsv new file size per old 0 / 4017692184 = 0.0 < 0.5 # Error: Failed to create output/tsv/mbgd_gene-uniprot.tsv or created file was empty # Failure: output/tsv/mbgd_gene-uniprot.tsv is not updated -> 2024-11-16T04:02:41 mbgd_gene-uniprot +> 2024-11-22T22:43:44 mbgd_gene-uniprot Rule for TSV (output/tsv/mbgd_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/mbgd_gene-uniprot.tsv @@ -2514,21 +2565,21 @@ task needed: true timestamp: 2024-10-18 22:08:10 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for mbgd_organism-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mbgd_organism-taxonomy.tsv is newer than config/mbgd_organism-taxonomy/config.yaml # File output/tsv/mbgd_organism-taxonomy.tsv has no timestamp file -# File output/tsv/mbgd_organism-taxonomy.tsv is created 28.246196631950507 days ago (will be updated when >5 days) +# File output/tsv/mbgd_organism-taxonomy.tsv is created 35.024696220151874 days ago (will be updated when >5 days) ## Update config/mbgd_organism-taxonomy/config.yaml => output/tsv/mbgd_organism-taxonomy.tsv -< 2024-11-16T04:02:41 mbgd_organism-taxonomy +< 2024-11-22T22:43:44 mbgd_organism-taxonomy togoid-config config/mbgd_organism-taxonomy update # Error: output/tsv/mbgd_organism-taxonomy.tsv new file size per old 0 / 81445 = 0.0 < 0.5 # Error: Failed to create output/tsv/mbgd_organism-taxonomy.tsv or created file was empty # Failure: output/tsv/mbgd_organism-taxonomy.tsv is not updated -> 2024-11-16T04:02:44 mbgd_organism-taxonomy +> 2024-11-22T22:43:47 mbgd_organism-taxonomy Rule for TSV (output/tsv/mbgd_organism-taxonomy.tsv) ------------------------------ Investigating output/tsv/mbgd_organism-taxonomy.tsv @@ -2537,307 +2588,307 @@ task needed: true timestamp: 2024-10-18 22:08:10 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for medgen-hp_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-hp_phenotype.tsv is newer than config/medgen-hp_phenotype/config.yaml # File output/tsv/medgen-hp_phenotype.tsv has no timestamp file -# File output/tsv/medgen-hp_phenotype.tsv is created 7.285529047048391 days ago (will be updated when >5 days) +# File output/tsv/medgen-hp_phenotype.tsv is created 6.778494415975961 days ago (will be updated when >5 days) ## Update config/medgen-hp_phenotype/config.yaml => output/tsv/medgen-hp_phenotype.tsv -< 2024-11-16T04:02:44 medgen-hp_phenotype +< 2024-11-22T22:43:47 medgen-hp_phenotype togoid-config config/medgen-hp_phenotype update # Success: output/tsv/medgen-hp_phenotype.tsv is updated -> 2024-11-16T04:02:45 medgen-hp_phenotype +> 2024-11-22T22:43:47 medgen-hp_phenotype Rule for TSV (output/tsv/medgen-hp_phenotype.tsv) ------------------------------ Investigating output/tsv/medgen-hp_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:02:45 +0900 +timestamp: 2024-11-22 22:43:47 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for medgen-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-mesh.tsv is newer than config/medgen-mesh/config.yaml # File output/tsv/medgen-mesh.tsv has no timestamp file -# File output/tsv/medgen-mesh.tsv is created 7.285527549142557 days ago (will be updated when >5 days) +# File output/tsv/medgen-mesh.tsv is created 6.7784945039133095 days ago (will be updated when >5 days) ## Update config/medgen-mesh/config.yaml => output/tsv/medgen-mesh.tsv -< 2024-11-16T04:02:45 medgen-mesh +< 2024-11-22T22:43:47 medgen-mesh togoid-config config/medgen-mesh update # Success: output/tsv/medgen-mesh.tsv is updated -> 2024-11-16T04:02:45 medgen-mesh +> 2024-11-22T22:43:48 medgen-mesh Rule for TSV (output/tsv/medgen-mesh.tsv) ------------------------------ Investigating output/tsv/medgen-mesh.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:02:45 +0900 +timestamp: 2024-11-22 22:43:48 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for medgen-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-mondo.tsv is newer than config/medgen-mondo/config.yaml # File output/tsv/medgen-mondo.tsv has no timestamp file -# File output/tsv/medgen-mondo.tsv is created 7.285527214314537 days ago (will be updated when >5 days) +# File output/tsv/medgen-mondo.tsv is created 6.778493891375312 days ago (will be updated when >5 days) ## Update config/medgen-mondo/config.yaml => output/tsv/medgen-mondo.tsv -< 2024-11-16T04:02:45 medgen-mondo +< 2024-11-22T22:43:48 medgen-mondo togoid-config config/medgen-mondo update # Success: output/tsv/medgen-mondo.tsv is updated -> 2024-11-16T04:02:46 medgen-mondo +> 2024-11-22T22:43:48 medgen-mondo Rule for TSV (output/tsv/medgen-mondo.tsv) ------------------------------ Investigating output/tsv/medgen-mondo.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:02:46 +0900 +timestamp: 2024-11-22 22:43:48 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for medgen-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-ncbigene.tsv is newer than config/medgen-ncbigene/config.yaml # File output/tsv/medgen-ncbigene.tsv has no timestamp file -# File output/tsv/medgen-ncbigene.tsv is created 7.285527185103889 days ago (will be updated when >5 days) +# File output/tsv/medgen-ncbigene.tsv is created 6.778495330531239 days ago (will be updated when >5 days) ## Update config/medgen-ncbigene/config.yaml => output/tsv/medgen-ncbigene.tsv -< 2024-11-16T04:02:46 medgen-ncbigene +< 2024-11-22T22:43:48 medgen-ncbigene togoid-config config/medgen-ncbigene update # Success: output/tsv/medgen-ncbigene.tsv is updated -> 2024-11-16T04:02:46 medgen-ncbigene +> 2024-11-22T22:43:49 medgen-ncbigene Rule for TSV (output/tsv/medgen-ncbigene.tsv) ------------------------------ Investigating output/tsv/medgen-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:02:46 +0900 +timestamp: 2024-11-22 22:43:49 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for medgen-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-omim_phenotype.tsv is newer than config/medgen-omim_phenotype/config.yaml # File output/tsv/medgen-omim_phenotype.tsv has no timestamp file -# File output/tsv/medgen-omim_phenotype.tsv is created 7.2855271137270945 days ago (will be updated when >5 days) +# File output/tsv/medgen-omim_phenotype.tsv is created 6.7784947203955435 days ago (will be updated when >5 days) ## Update config/medgen-omim_phenotype/config.yaml => output/tsv/medgen-omim_phenotype.tsv -< 2024-11-16T04:02:46 medgen-omim_phenotype +< 2024-11-22T22:43:49 medgen-omim_phenotype togoid-config config/medgen-omim_phenotype update # Success: output/tsv/medgen-omim_phenotype.tsv is updated -> 2024-11-16T04:02:47 medgen-omim_phenotype +> 2024-11-22T22:43:49 medgen-omim_phenotype Rule for TSV (output/tsv/medgen-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/medgen-omim_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:02:47 +0900 +timestamp: 2024-11-22 22:43:49 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for medgen-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-orphanet_phenotype.tsv is newer than config/medgen-orphanet_phenotype/config.yaml # File output/tsv/medgen-orphanet_phenotype.tsv has no timestamp file -# File output/tsv/medgen-orphanet_phenotype.tsv is created 7.285528092512338 days ago (will be updated when >5 days) +# File output/tsv/medgen-orphanet_phenotype.tsv is created 6.778494555290879 days ago (will be updated when >5 days) ## Update config/medgen-orphanet_phenotype/config.yaml => output/tsv/medgen-orphanet_phenotype.tsv -< 2024-11-16T04:02:47 medgen-orphanet_phenotype +< 2024-11-22T22:43:49 medgen-orphanet_phenotype togoid-config config/medgen-orphanet_phenotype update # Success: output/tsv/medgen-orphanet_phenotype.tsv is updated -> 2024-11-16T04:02:47 medgen-orphanet_phenotype +> 2024-11-22T22:43:49 medgen-orphanet_phenotype Rule for TSV (output/tsv/medgen-orphanet_phenotype.tsv) ------------------------------ Investigating output/tsv/medgen-orphanet_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:02:47 +0900 +timestamp: 2024-11-22 22:43:49 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for mgi_gene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-ensembl_gene.tsv is newer than config/mgi_gene-ensembl_gene/config.yaml # File output/tsv/mgi_gene-ensembl_gene.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-ensembl_gene/config.yaml => output/tsv/mgi_gene-ensembl_gene.tsv -< 2024-11-16T04:02:47 mgi_gene-ensembl_gene +< 2024-11-22T22:43:49 mgi_gene-ensembl_gene togoid-config config/mgi_gene-ensembl_gene update # Success: output/tsv/mgi_gene-ensembl_gene.tsv is updated -> 2024-11-16T04:02:48 mgi_gene-ensembl_gene +> 2024-11-22T22:43:50 mgi_gene-ensembl_gene Rule for TSV (output/tsv/mgi_gene-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/mgi_gene-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:02:48 +0900 +timestamp: 2024-11-22 22:43:50 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-11-16 04:02:48 +0900) -latest-prerequisite time: 2024-11-16 04:02:48 +0900 +--prepare:mgi_gene (2024-11-22 22:43:50 +0900) +latest-prerequisite time: 2024-11-22 22:43:50 +0900 ................................ ### Update TSV for mgi_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-hgnc.tsv is newer than config/mgi_gene-hgnc/config.yaml # File output/tsv/mgi_gene-hgnc.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-hgnc/config.yaml => output/tsv/mgi_gene-hgnc.tsv -< 2024-11-16T04:02:48 mgi_gene-hgnc +< 2024-11-22T22:43:50 mgi_gene-hgnc togoid-config config/mgi_gene-hgnc update # Success: output/tsv/mgi_gene-hgnc.tsv is updated -> 2024-11-16T04:02:48 mgi_gene-hgnc +> 2024-11-22T22:43:51 mgi_gene-hgnc Rule for TSV (output/tsv/mgi_gene-hgnc.tsv) ------------------------------ Investigating output/tsv/mgi_gene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:02:48 +0900 +timestamp: 2024-11-22 22:43:51 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-11-16 04:02:48 +0900) -latest-prerequisite time: 2024-11-16 04:02:48 +0900 +--prepare:mgi_gene (2024-11-22 22:43:51 +0900) +latest-prerequisite time: 2024-11-22 22:43:51 +0900 ................................ ### Update TSV for mgi_gene-mgi_allele if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-mgi_allele.tsv is newer than config/mgi_gene-mgi_allele/config.yaml # File output/tsv/mgi_gene-mgi_allele.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-mgi_allele/config.yaml => output/tsv/mgi_gene-mgi_allele.tsv -< 2024-11-16T04:02:48 mgi_gene-mgi_allele +< 2024-11-22T22:43:51 mgi_gene-mgi_allele togoid-config config/mgi_gene-mgi_allele update # Success: output/tsv/mgi_gene-mgi_allele.tsv is updated -> 2024-11-16T04:02:49 mgi_gene-mgi_allele +> 2024-11-22T22:43:52 mgi_gene-mgi_allele Rule for TSV (output/tsv/mgi_gene-mgi_allele.tsv) ------------------------------ Investigating output/tsv/mgi_gene-mgi_allele.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:02:49 +0900 +timestamp: 2024-11-22 22:43:52 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-11-16 04:02:49 +0900) -latest-prerequisite time: 2024-11-16 04:02:49 +0900 +--prepare:mgi_gene (2024-11-22 22:43:52 +0900) +latest-prerequisite time: 2024-11-22 22:43:52 +0900 ................................ ### Update TSV for mgi_gene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-ncbigene.tsv is newer than config/mgi_gene-ncbigene/config.yaml # File output/tsv/mgi_gene-ncbigene.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-ncbigene/config.yaml => output/tsv/mgi_gene-ncbigene.tsv -< 2024-11-16T04:02:49 mgi_gene-ncbigene +< 2024-11-22T22:43:52 mgi_gene-ncbigene togoid-config config/mgi_gene-ncbigene update # Success: output/tsv/mgi_gene-ncbigene.tsv is updated -> 2024-11-16T04:02:50 mgi_gene-ncbigene +> 2024-11-22T22:43:53 mgi_gene-ncbigene Rule for TSV (output/tsv/mgi_gene-ncbigene.tsv) ------------------------------ Investigating output/tsv/mgi_gene-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:02:50 +0900 +timestamp: 2024-11-22 22:43:52 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-11-16 04:02:50 +0900) -latest-prerequisite time: 2024-11-16 04:02:50 +0900 +--prepare:mgi_gene (2024-11-22 22:43:53 +0900) +latest-prerequisite time: 2024-11-22 22:43:53 +0900 ................................ ### Update TSV for mgi_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-uniprot.tsv is newer than config/mgi_gene-uniprot/config.yaml # File output/tsv/mgi_gene-uniprot.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-uniprot/config.yaml => output/tsv/mgi_gene-uniprot.tsv -< 2024-11-16T04:02:50 mgi_gene-uniprot +< 2024-11-22T22:43:53 mgi_gene-uniprot togoid-config config/mgi_gene-uniprot update # Success: output/tsv/mgi_gene-uniprot.tsv is updated -> 2024-11-16T04:02:50 mgi_gene-uniprot +> 2024-11-22T22:43:53 mgi_gene-uniprot Rule for TSV (output/tsv/mgi_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/mgi_gene-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:02:50 +0900 +timestamp: 2024-11-22 22:43:53 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-11-16 04:02:50 +0900) -latest-prerequisite time: 2024-11-16 04:02:50 +0900 +--prepare:mgi_gene (2024-11-22 22:43:53 +0900) +latest-prerequisite time: 2024-11-22 22:43:53 +0900 ................................ ### Update TSV for mgi_genotype-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-doid.tsv is newer than config/mgi_genotype-doid/config.yaml # File output/tsv/mgi_genotype-doid.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-doid/config.yaml => output/tsv/mgi_genotype-doid.tsv -< 2024-11-16T04:02:50 mgi_genotype-doid +< 2024-11-22T22:43:53 mgi_genotype-doid togoid-config config/mgi_genotype-doid update # Success: output/tsv/mgi_genotype-doid.tsv is updated -> 2024-11-16T04:02:52 mgi_genotype-doid +> 2024-11-22T22:43:55 mgi_genotype-doid Rule for TSV (output/tsv/mgi_genotype-doid.tsv) ------------------------------ Investigating output/tsv/mgi_genotype-doid.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:02:52 +0900 +timestamp: 2024-11-22 22:43:55 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_genotype (2024-11-16 04:02:52 +0900) -latest-prerequisite time: 2024-11-16 04:02:52 +0900 +--prepare:mgi_genotype (2024-11-22 22:43:55 +0900) +latest-prerequisite time: 2024-11-22 22:43:55 +0900 ................................ ### Update TSV for mgi_genotype-mgi_allele if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-mgi_allele.tsv is newer than config/mgi_genotype-mgi_allele/config.yaml # File output/tsv/mgi_genotype-mgi_allele.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-mgi_allele/config.yaml => output/tsv/mgi_genotype-mgi_allele.tsv -< 2024-11-16T04:02:52 mgi_genotype-mgi_allele +< 2024-11-22T22:43:55 mgi_genotype-mgi_allele togoid-config config/mgi_genotype-mgi_allele update # Success: output/tsv/mgi_genotype-mgi_allele.tsv is updated -> 2024-11-16T04:02:53 mgi_genotype-mgi_allele +> 2024-11-22T22:43:56 mgi_genotype-mgi_allele Rule for TSV (output/tsv/mgi_genotype-mgi_allele.tsv) ------------------------------ Investigating output/tsv/mgi_genotype-mgi_allele.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:02:53 +0900 +timestamp: 2024-11-22 22:43:56 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_genotype (2024-11-16 04:02:53 +0900) -latest-prerequisite time: 2024-11-16 04:02:53 +0900 +--prepare:mgi_genotype (2024-11-22 22:43:56 +0900) +latest-prerequisite time: 2024-11-22 22:43:56 +0900 ................................ ### Update TSV for mgi_genotype-mp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-mp.tsv is newer than config/mgi_genotype-mp/config.yaml # File output/tsv/mgi_genotype-mp.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-mp/config.yaml => output/tsv/mgi_genotype-mp.tsv -< 2024-11-16T04:02:53 mgi_genotype-mp +< 2024-11-22T22:43:56 mgi_genotype-mp togoid-config config/mgi_genotype-mp update # Success: output/tsv/mgi_genotype-mp.tsv is updated -> 2024-11-16T04:02:56 mgi_genotype-mp +> 2024-11-22T22:43:58 mgi_genotype-mp Rule for TSV (output/tsv/mgi_genotype-mp.tsv) ------------------------------ Investigating output/tsv/mgi_genotype-mp.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:02:56 +0900 +timestamp: 2024-11-22 22:43:58 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_genotype (2024-11-16 04:02:56 +0900) -latest-prerequisite time: 2024-11-16 04:02:56 +0900 +--prepare:mgi_genotype (2024-11-22 22:43:58 +0900) +latest-prerequisite time: 2024-11-22 22:43:58 +0900 ................................ ### Update TSV for mondo-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-doid.tsv is newer than config/mondo-doid/config.yaml # File output/tsv/mondo-doid.tsv has no timestamp file -# File output/tsv/mondo-doid.tsv is created 174.53763174955102 days ago (will be updated when >5 days) +# File output/tsv/mondo-doid.tsv is created 181.31613332461197 days ago (will be updated when >5 days) ## Update config/mondo-doid/config.yaml => output/tsv/mondo-doid.tsv -< 2024-11-16T04:02:56 mondo-doid +< 2024-11-22T22:43:58 mondo-doid togoid-config config/mondo-doid update # Error: output/tsv/mondo-doid.tsv new file size per old 0 / 155460 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-doid.tsv or created file was empty # Failure: output/tsv/mondo-doid.tsv is not updated -> 2024-11-16T04:02:56 mondo-doid +> 2024-11-22T22:43:59 mondo-doid Rule for TSV (output/tsv/mondo-doid.tsv) ------------------------------ Investigating output/tsv/mondo-doid.tsv @@ -2846,21 +2897,21 @@ task needed: true timestamp: 2024-05-25 15:08:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for mondo-hp_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-hp_phenotype.tsv is newer than config/mondo-hp_phenotype/config.yaml # File output/tsv/mondo-hp_phenotype.tsv has no timestamp file -# File output/tsv/mondo-hp_phenotype.tsv is created 174.53763083968406 days ago (will be updated when >5 days) +# File output/tsv/mondo-hp_phenotype.tsv is created 181.31613233950347 days ago (will be updated when >5 days) ## Update config/mondo-hp_phenotype/config.yaml => output/tsv/mondo-hp_phenotype.tsv -< 2024-11-16T04:02:56 mondo-hp_phenotype +< 2024-11-22T22:43:59 mondo-hp_phenotype togoid-config config/mondo-hp_phenotype update # Error: output/tsv/mondo-hp_phenotype.tsv new file size per old 0 / 9184 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-hp_phenotype.tsv or created file was empty # Failure: output/tsv/mondo-hp_phenotype.tsv is not updated -> 2024-11-16T04:02:57 mondo-hp_phenotype +> 2024-11-22T22:43:59 mondo-hp_phenotype Rule for TSV (output/tsv/mondo-hp_phenotype.tsv) ------------------------------ Investigating output/tsv/mondo-hp_phenotype.tsv @@ -2869,21 +2920,21 @@ task needed: true timestamp: 2024-05-25 15:08:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for mondo-meddra if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-meddra.tsv is newer than config/mondo-meddra/config.yaml # File output/tsv/mondo-meddra.tsv has no timestamp file -# File output/tsv/mondo-meddra.tsv is created 174.53763098978553 days ago (will be updated when >5 days) +# File output/tsv/mondo-meddra.tsv is created 181.31613387214995 days ago (will be updated when >5 days) ## Update config/mondo-meddra/config.yaml => output/tsv/mondo-meddra.tsv -< 2024-11-16T04:02:57 mondo-meddra +< 2024-11-22T22:43:59 mondo-meddra togoid-config config/mondo-meddra update # Error: output/tsv/mondo-meddra.tsv new file size per old 0 / 25262 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-meddra.tsv or created file was empty # Failure: output/tsv/mondo-meddra.tsv is not updated -> 2024-11-16T04:02:57 mondo-meddra +> 2024-11-22T22:44:00 mondo-meddra Rule for TSV (output/tsv/mondo-meddra.tsv) ------------------------------ Investigating output/tsv/mondo-meddra.tsv @@ -2892,21 +2943,21 @@ task needed: true timestamp: 2024-05-25 15:08:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for mondo-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-mesh.tsv is newer than config/mondo-mesh/config.yaml # File output/tsv/mondo-mesh.tsv has no timestamp file -# File output/tsv/mondo-mesh.tsv is created 174.53763065845655 days ago (will be updated when >5 days) +# File output/tsv/mondo-mesh.tsv is created 181.3161329350113 days ago (will be updated when >5 days) ## Update config/mondo-mesh/config.yaml => output/tsv/mondo-mesh.tsv -< 2024-11-16T04:02:57 mondo-mesh +< 2024-11-22T22:44:00 mondo-mesh togoid-config config/mondo-mesh update # Error: output/tsv/mondo-mesh.tsv new file size per old 0 / 133836 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-mesh.tsv or created file was empty # Failure: output/tsv/mondo-mesh.tsv is not updated -> 2024-11-16T04:02:58 mondo-mesh +> 2024-11-22T22:44:00 mondo-mesh Rule for TSV (output/tsv/mondo-mesh.tsv) ------------------------------ Investigating output/tsv/mondo-mesh.tsv @@ -2915,21 +2966,21 @@ task needed: true timestamp: 2024-05-25 15:08:46 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for mondo-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-omim_phenotype.tsv is newer than config/mondo-omim_phenotype/config.yaml # File output/tsv/mondo-omim_phenotype.tsv has no timestamp file -# File output/tsv/mondo-omim_phenotype.tsv is created 174.53763072534073 days ago (will be updated when >5 days) +# File output/tsv/mondo-omim_phenotype.tsv is created 181.31613311635832 days ago (will be updated when >5 days) ## Update config/mondo-omim_phenotype/config.yaml => output/tsv/mondo-omim_phenotype.tsv -< 2024-11-16T04:02:58 mondo-omim_phenotype +< 2024-11-22T22:44:00 mondo-omim_phenotype togoid-config config/mondo-omim_phenotype update # Error: output/tsv/mondo-omim_phenotype.tsv new file size per old 0 / 145395 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-omim_phenotype.tsv or created file was empty # Failure: output/tsv/mondo-omim_phenotype.tsv is not updated -> 2024-11-16T04:02:58 mondo-omim_phenotype +> 2024-11-22T22:44:01 mondo-omim_phenotype Rule for TSV (output/tsv/mondo-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/mondo-omim_phenotype.tsv @@ -2938,21 +2989,21 @@ task needed: true timestamp: 2024-05-25 15:08:46 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for mondo-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-orphanet_phenotype.tsv is newer than config/mondo-orphanet_phenotype/config.yaml # File output/tsv/mondo-orphanet_phenotype.tsv has no timestamp file -# File output/tsv/mondo-orphanet_phenotype.tsv is created 174.53763048414888 days ago (will be updated when >5 days) +# File output/tsv/mondo-orphanet_phenotype.tsv is created 181.31613299940705 days ago (will be updated when >5 days) ## Update config/mondo-orphanet_phenotype/config.yaml => output/tsv/mondo-orphanet_phenotype.tsv -< 2024-11-16T04:02:58 mondo-orphanet_phenotype +< 2024-11-22T22:44:01 mondo-orphanet_phenotype togoid-config config/mondo-orphanet_phenotype update # Error: output/tsv/mondo-orphanet_phenotype.tsv new file size per old 0 / 146923 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-orphanet_phenotype.tsv or created file was empty # Failure: output/tsv/mondo-orphanet_phenotype.tsv is not updated -> 2024-11-16T04:02:58 mondo-orphanet_phenotype +> 2024-11-22T22:44:01 mondo-orphanet_phenotype Rule for TSV (output/tsv/mondo-orphanet_phenotype.tsv) ------------------------------ Investigating output/tsv/mondo-orphanet_phenotype.tsv @@ -2961,450 +3012,450 @@ task needed: true timestamp: 2024-05-25 15:08:47 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for nando-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/nando-mondo.tsv is newer than config/nando-mondo/config.yaml # File output/tsv/nando-mondo.tsv has no timestamp file -# File output/tsv/nando-mondo.tsv is created 7.285519298687847 days ago (will be updated when >5 days) +# File output/tsv/nando-mondo.tsv is created 6.778497776625613 days ago (will be updated when >5 days) ## Update config/nando-mondo/config.yaml => output/tsv/nando-mondo.tsv -< 2024-11-16T04:02:58 nando-mondo +< 2024-11-22T22:44:01 nando-mondo togoid-config config/nando-mondo update # Success: output/tsv/nando-mondo.tsv is updated -> 2024-11-16T04:02:59 nando-mondo +> 2024-11-22T22:44:01 nando-mondo Rule for TSV (output/tsv/nando-mondo.tsv) ------------------------------ Investigating output/tsv/nando-mondo.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:02:59 +0900 +timestamp: 2024-11-22 22:44:01 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for ncbigene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_gene.tsv is newer than config/ncbigene-ensembl_gene/config.yaml # File output/tsv/ncbigene-ensembl_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_gene/config.yaml => output/tsv/ncbigene-ensembl_gene.tsv -< 2024-11-16T04:02:59 ncbigene-ensembl_gene +< 2024-11-22T22:44:01 ncbigene-ensembl_gene togoid-config config/ncbigene-ensembl_gene update # Success: output/tsv/ncbigene-ensembl_gene.tsv is updated -> 2024-11-16T04:03:33 ncbigene-ensembl_gene +> 2024-11-22T22:44:37 ncbigene-ensembl_gene Rule for TSV (output/tsv/ncbigene-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:03:33 +0900 +timestamp: 2024-11-22 22:44:37 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:03:33 +0900) -latest-prerequisite time: 2024-11-16 04:03:33 +0900 +--prepare:ncbigene (2024-11-22 22:44:37 +0900) +latest-prerequisite time: 2024-11-22 22:44:37 +0900 ................................ ### Update TSV for ncbigene-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_protein.tsv is newer than config/ncbigene-ensembl_protein/config.yaml # File output/tsv/ncbigene-ensembl_protein.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_protein/config.yaml => output/tsv/ncbigene-ensembl_protein.tsv -< 2024-11-16T04:03:33 ncbigene-ensembl_protein +< 2024-11-22T22:44:37 ncbigene-ensembl_protein togoid-config config/ncbigene-ensembl_protein update # Success: output/tsv/ncbigene-ensembl_protein.tsv is updated -> 2024-11-16T04:04:50 ncbigene-ensembl_protein +> 2024-11-22T22:45:47 ncbigene-ensembl_protein Rule for TSV (output/tsv/ncbigene-ensembl_protein.tsv) ------------------------------ Investigating output/tsv/ncbigene-ensembl_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:04:50 +0900 +timestamp: 2024-11-22 22:45:47 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:04:50 +0900) -latest-prerequisite time: 2024-11-16 04:04:50 +0900 +--prepare:ncbigene (2024-11-22 22:45:47 +0900) +latest-prerequisite time: 2024-11-22 22:45:47 +0900 ................................ ### Update TSV for ncbigene-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_transcript.tsv is newer than config/ncbigene-ensembl_transcript/config.yaml # File output/tsv/ncbigene-ensembl_transcript.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_transcript/config.yaml => output/tsv/ncbigene-ensembl_transcript.tsv -< 2024-11-16T04:04:50 ncbigene-ensembl_transcript +< 2024-11-22T22:45:47 ncbigene-ensembl_transcript togoid-config config/ncbigene-ensembl_transcript update # Success: output/tsv/ncbigene-ensembl_transcript.tsv is updated -> 2024-11-16T04:05:56 ncbigene-ensembl_transcript +> 2024-11-22T22:46:50 ncbigene-ensembl_transcript Rule for TSV (output/tsv/ncbigene-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/ncbigene-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:05:56 +0900 +timestamp: 2024-11-22 22:46:50 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:05:56 +0900) -latest-prerequisite time: 2024-11-16 04:05:56 +0900 +--prepare:ncbigene (2024-11-22 22:46:50 +0900) +latest-prerequisite time: 2024-11-22 22:46:50 +0900 ................................ ### Update TSV for ncbigene-flybase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-flybase_gene.tsv is newer than config/ncbigene-flybase_gene/config.yaml # File output/tsv/ncbigene-flybase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-flybase_gene/config.yaml => output/tsv/ncbigene-flybase_gene.tsv -< 2024-11-16T04:05:56 ncbigene-flybase_gene +< 2024-11-22T22:46:50 ncbigene-flybase_gene togoid-config config/ncbigene-flybase_gene update # Success: output/tsv/ncbigene-flybase_gene.tsv is updated -> 2024-11-16T04:07:24 ncbigene-flybase_gene +> 2024-11-22T22:50:01 ncbigene-flybase_gene Rule for TSV (output/tsv/ncbigene-flybase_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-flybase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:07:24 +0900 +timestamp: 2024-11-22 22:50:01 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:07:24 +0900) -latest-prerequisite time: 2024-11-16 04:07:24 +0900 +--prepare:ncbigene (2024-11-22 22:50:01 +0900) +latest-prerequisite time: 2024-11-22 22:50:01 +0900 ................................ ### Update TSV for ncbigene-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-go.tsv is newer than config/ncbigene-go/config.yaml # File output/tsv/ncbigene-go.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-go/config.yaml => output/tsv/ncbigene-go.tsv -< 2024-11-16T04:07:24 ncbigene-go +< 2024-11-22T22:50:01 ncbigene-go togoid-config config/ncbigene-go update # Success: output/tsv/ncbigene-go.tsv is updated -> 2024-11-16T04:14:30 ncbigene-go +> 2024-11-22T23:06:39 ncbigene-go Rule for TSV (output/tsv/ncbigene-go.tsv) ------------------------------ Investigating output/tsv/ncbigene-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:14:30 +0900 +timestamp: 2024-11-22 23:06:38 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:14:30 +0900) -latest-prerequisite time: 2024-11-16 04:14:30 +0900 +--prepare:ncbigene (2024-11-22 23:06:39 +0900) +latest-prerequisite time: 2024-11-22 23:06:39 +0900 ................................ ### Update TSV for ncbigene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-hgnc.tsv is newer than config/ncbigene-hgnc/config.yaml # File output/tsv/ncbigene-hgnc.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-hgnc/config.yaml => output/tsv/ncbigene-hgnc.tsv -< 2024-11-16T04:14:30 ncbigene-hgnc +< 2024-11-22T23:06:39 ncbigene-hgnc togoid-config config/ncbigene-hgnc update # Success: output/tsv/ncbigene-hgnc.tsv is updated -> 2024-11-16T04:14:31 ncbigene-hgnc +> 2024-11-22T23:06:40 ncbigene-hgnc Rule for TSV (output/tsv/ncbigene-hgnc.tsv) ------------------------------ Investigating output/tsv/ncbigene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:14:31 +0900 +timestamp: 2024-11-22 23:06:40 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:14:31 +0900) -latest-prerequisite time: 2024-11-16 04:14:31 +0900 +--prepare:ncbigene (2024-11-22 23:06:40 +0900) +latest-prerequisite time: 2024-11-22 23:06:40 +0900 ................................ ### Update TSV for ncbigene-mgi_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-mgi_gene.tsv is newer than config/ncbigene-mgi_gene/config.yaml # File output/tsv/ncbigene-mgi_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-mgi_gene/config.yaml => output/tsv/ncbigene-mgi_gene.tsv -< 2024-11-16T04:14:32 ncbigene-mgi_gene +< 2024-11-22T23:06:40 ncbigene-mgi_gene togoid-config config/ncbigene-mgi_gene update # Success: output/tsv/ncbigene-mgi_gene.tsv is updated -> 2024-11-16T04:15:40 ncbigene-mgi_gene +> 2024-11-22T23:07:52 ncbigene-mgi_gene Rule for TSV (output/tsv/ncbigene-mgi_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-mgi_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:15:40 +0900 +timestamp: 2024-11-22 23:07:52 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:15:40 +0900) -latest-prerequisite time: 2024-11-16 04:15:40 +0900 +--prepare:ncbigene (2024-11-22 23:07:52 +0900) +latest-prerequisite time: 2024-11-22 23:07:52 +0900 ................................ ### Update TSV for ncbigene-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-mirbase.tsv is newer than config/ncbigene-mirbase/config.yaml # File output/tsv/ncbigene-mirbase.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-mirbase/config.yaml => output/tsv/ncbigene-mirbase.tsv -< 2024-11-16T04:15:40 ncbigene-mirbase +< 2024-11-22T23:07:52 ncbigene-mirbase togoid-config config/ncbigene-mirbase update # Success: output/tsv/ncbigene-mirbase.tsv is updated -> 2024-11-16T04:17:33 ncbigene-mirbase +> 2024-11-22T23:09:45 ncbigene-mirbase Rule for TSV (output/tsv/ncbigene-mirbase.tsv) ------------------------------ Investigating output/tsv/ncbigene-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:17:33 +0900 +timestamp: 2024-11-22 23:09:45 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:17:33 +0900) -latest-prerequisite time: 2024-11-16 04:17:33 +0900 +--prepare:ncbigene (2024-11-22 23:09:45 +0900) +latest-prerequisite time: 2024-11-22 23:09:45 +0900 ................................ ### Update TSV for ncbigene-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-omim_gene.tsv is newer than config/ncbigene-omim_gene/config.yaml # File output/tsv/ncbigene-omim_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-omim_gene/config.yaml => output/tsv/ncbigene-omim_gene.tsv -< 2024-11-16T04:17:33 ncbigene-omim_gene +< 2024-11-22T23:09:45 ncbigene-omim_gene togoid-config config/ncbigene-omim_gene update # Success: output/tsv/ncbigene-omim_gene.tsv is updated -> 2024-11-16T04:17:34 ncbigene-omim_gene +> 2024-11-22T23:09:46 ncbigene-omim_gene Rule for TSV (output/tsv/ncbigene-omim_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-omim_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:17:34 +0900 +timestamp: 2024-11-22 23:09:46 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:17:34 +0900) -latest-prerequisite time: 2024-11-16 04:17:34 +0900 +--prepare:ncbigene (2024-11-22 23:09:46 +0900) +latest-prerequisite time: 2024-11-22 23:09:46 +0900 ................................ ### Update TSV for ncbigene-refseq_genomic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_genomic.tsv is newer than config/ncbigene-refseq_genomic/config.yaml # File output/tsv/ncbigene-refseq_genomic.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_genomic/config.yaml => output/tsv/ncbigene-refseq_genomic.tsv -< 2024-11-16T04:17:34 ncbigene-refseq_genomic +< 2024-11-22T23:09:46 ncbigene-refseq_genomic togoid-config config/ncbigene-refseq_genomic update # Success: output/tsv/ncbigene-refseq_genomic.tsv is updated -> 2024-11-16T04:22:11 ncbigene-refseq_genomic +> 2024-11-22T23:14:22 ncbigene-refseq_genomic Rule for TSV (output/tsv/ncbigene-refseq_genomic.tsv) ------------------------------ Investigating output/tsv/ncbigene-refseq_genomic.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:22:11 +0900 +timestamp: 2024-11-22 23:14:22 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:22:11 +0900) -latest-prerequisite time: 2024-11-16 04:22:11 +0900 +--prepare:ncbigene (2024-11-22 23:14:22 +0900) +latest-prerequisite time: 2024-11-22 23:14:22 +0900 ................................ ### Update TSV for ncbigene-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_protein.tsv is newer than config/ncbigene-refseq_protein/config.yaml # File output/tsv/ncbigene-refseq_protein.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_protein/config.yaml => output/tsv/ncbigene-refseq_protein.tsv -< 2024-11-16T04:22:11 ncbigene-refseq_protein +< 2024-11-22T23:14:22 ncbigene-refseq_protein togoid-config config/ncbigene-refseq_protein update # Success: output/tsv/ncbigene-refseq_protein.tsv is updated -> 2024-11-16T04:27:11 ncbigene-refseq_protein +> 2024-11-22T23:19:52 ncbigene-refseq_protein Rule for TSV (output/tsv/ncbigene-refseq_protein.tsv) ------------------------------ Investigating output/tsv/ncbigene-refseq_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:27:11 +0900 +timestamp: 2024-11-22 23:19:52 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:27:11 +0900) -latest-prerequisite time: 2024-11-16 04:27:11 +0900 +--prepare:ncbigene (2024-11-22 23:19:52 +0900) +latest-prerequisite time: 2024-11-22 23:19:52 +0900 ................................ ### Update TSV for ncbigene-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_rna.tsv is newer than config/ncbigene-refseq_rna/config.yaml # File output/tsv/ncbigene-refseq_rna.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_rna/config.yaml => output/tsv/ncbigene-refseq_rna.tsv -< 2024-11-16T04:27:11 ncbigene-refseq_rna +< 2024-11-22T23:19:52 ncbigene-refseq_rna togoid-config config/ncbigene-refseq_rna update # Success: output/tsv/ncbigene-refseq_rna.tsv is updated -> 2024-11-16T04:31:33 ncbigene-refseq_rna +> 2024-11-22T23:24:50 ncbigene-refseq_rna Rule for TSV (output/tsv/ncbigene-refseq_rna.tsv) ------------------------------ Investigating output/tsv/ncbigene-refseq_rna.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:31:33 +0900 +timestamp: 2024-11-22 23:24:50 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:31:33 +0900) -latest-prerequisite time: 2024-11-16 04:31:33 +0900 +--prepare:ncbigene (2024-11-22 23:24:50 +0900) +latest-prerequisite time: 2024-11-22 23:24:50 +0900 ................................ ### Update TSV for ncbigene-rgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-rgd.tsv is newer than config/ncbigene-rgd/config.yaml # File output/tsv/ncbigene-rgd.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-rgd/config.yaml => output/tsv/ncbigene-rgd.tsv -< 2024-11-16T04:31:33 ncbigene-rgd +< 2024-11-22T23:24:50 ncbigene-rgd togoid-config config/ncbigene-rgd update # Success: output/tsv/ncbigene-rgd.tsv is updated -> 2024-11-16T04:32:40 ncbigene-rgd +> 2024-11-22T23:25:59 ncbigene-rgd Rule for TSV (output/tsv/ncbigene-rgd.tsv) ------------------------------ Investigating output/tsv/ncbigene-rgd.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:32:40 +0900 +timestamp: 2024-11-22 23:25:59 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:32:40 +0900) -latest-prerequisite time: 2024-11-16 04:32:40 +0900 +--prepare:ncbigene (2024-11-22 23:25:59 +0900) +latest-prerequisite time: 2024-11-22 23:25:59 +0900 ................................ ### Update TSV for ncbigene-sgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-sgd.tsv is newer than config/ncbigene-sgd/config.yaml # File output/tsv/ncbigene-sgd.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-sgd/config.yaml => output/tsv/ncbigene-sgd.tsv -< 2024-11-16T04:32:40 ncbigene-sgd +< 2024-11-22T23:25:59 ncbigene-sgd togoid-config config/ncbigene-sgd update # Success: output/tsv/ncbigene-sgd.tsv is updated -> 2024-11-16T04:34:01 ncbigene-sgd +> 2024-11-22T23:27:16 ncbigene-sgd Rule for TSV (output/tsv/ncbigene-sgd.tsv) ------------------------------ Investigating output/tsv/ncbigene-sgd.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:34:01 +0900 +timestamp: 2024-11-22 23:27:16 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:34:01 +0900) -latest-prerequisite time: 2024-11-16 04:34:01 +0900 +--prepare:ncbigene (2024-11-22 23:27:16 +0900) +latest-prerequisite time: 2024-11-22 23:27:16 +0900 ................................ ### Update TSV for ncbigene-tair if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-tair.tsv is newer than config/ncbigene-tair/config.yaml # File output/tsv/ncbigene-tair.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-tair/config.yaml => output/tsv/ncbigene-tair.tsv -< 2024-11-16T04:34:01 ncbigene-tair +< 2024-11-22T23:27:16 ncbigene-tair togoid-config config/ncbigene-tair update # Success: output/tsv/ncbigene-tair.tsv is updated -> 2024-11-16T04:35:19 ncbigene-tair +> 2024-11-22T23:28:35 ncbigene-tair Rule for TSV (output/tsv/ncbigene-tair.tsv) ------------------------------ Investigating output/tsv/ncbigene-tair.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:35:19 +0900 +timestamp: 2024-11-22 23:28:35 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:35:19 +0900) -latest-prerequisite time: 2024-11-16 04:35:19 +0900 +--prepare:ncbigene (2024-11-22 23:28:35 +0900) +latest-prerequisite time: 2024-11-22 23:28:35 +0900 ................................ ### Update TSV for ncbigene-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-taxonomy.tsv is newer than config/ncbigene-taxonomy/config.yaml # File output/tsv/ncbigene-taxonomy.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-taxonomy/config.yaml => output/tsv/ncbigene-taxonomy.tsv -< 2024-11-16T04:35:19 ncbigene-taxonomy +< 2024-11-22T23:28:35 ncbigene-taxonomy togoid-config config/ncbigene-taxonomy update # Success: output/tsv/ncbigene-taxonomy.tsv is updated -> 2024-11-16T04:36:08 ncbigene-taxonomy +> 2024-11-22T23:29:24 ncbigene-taxonomy Rule for TSV (output/tsv/ncbigene-taxonomy.tsv) ------------------------------ Investigating output/tsv/ncbigene-taxonomy.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:36:08 +0900 +timestamp: 2024-11-22 23:29:24 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:36:08 +0900) -latest-prerequisite time: 2024-11-16 04:36:08 +0900 +--prepare:ncbigene (2024-11-22 23:29:24 +0900) +latest-prerequisite time: 2024-11-22 23:29:24 +0900 ................................ ### Update TSV for ncbigene-vgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-vgnc.tsv is newer than config/ncbigene-vgnc/config.yaml # File output/tsv/ncbigene-vgnc.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-vgnc/config.yaml => output/tsv/ncbigene-vgnc.tsv -< 2024-11-16T04:36:08 ncbigene-vgnc +< 2024-11-22T23:29:24 ncbigene-vgnc togoid-config config/ncbigene-vgnc update # Success: output/tsv/ncbigene-vgnc.tsv is updated -> 2024-11-16T04:37:27 ncbigene-vgnc +> 2024-11-22T23:30:42 ncbigene-vgnc Rule for TSV (output/tsv/ncbigene-vgnc.tsv) ------------------------------ Investigating output/tsv/ncbigene-vgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:37:27 +0900 +timestamp: 2024-11-22 23:30:42 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:37:27 +0900) -latest-prerequisite time: 2024-11-16 04:37:27 +0900 +--prepare:ncbigene (2024-11-22 23:30:42 +0900) +latest-prerequisite time: 2024-11-22 23:30:42 +0900 ................................ ### Update TSV for ncbigene-wormbase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-wormbase_gene.tsv is newer than config/ncbigene-wormbase_gene/config.yaml # File output/tsv/ncbigene-wormbase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-wormbase_gene/config.yaml => output/tsv/ncbigene-wormbase_gene.tsv -< 2024-11-16T04:37:27 ncbigene-wormbase_gene +< 2024-11-22T23:30:42 ncbigene-wormbase_gene togoid-config config/ncbigene-wormbase_gene update # Success: output/tsv/ncbigene-wormbase_gene.tsv is updated -> 2024-11-16T04:38:44 ncbigene-wormbase_gene +> 2024-11-22T23:32:00 ncbigene-wormbase_gene Rule for TSV (output/tsv/ncbigene-wormbase_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-wormbase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:38:44 +0900 +timestamp: 2024-11-22 23:32:00 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:38:44 +0900) -latest-prerequisite time: 2024-11-16 04:38:44 +0900 +--prepare:ncbigene (2024-11-22 23:32:00 +0900) +latest-prerequisite time: 2024-11-22 23:32:00 +0900 ................................ ### Update TSV for ncbigene-xenbase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-xenbase_gene.tsv is newer than config/ncbigene-xenbase_gene/config.yaml # File output/tsv/ncbigene-xenbase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-xenbase_gene/config.yaml => output/tsv/ncbigene-xenbase_gene.tsv -< 2024-11-16T04:38:44 ncbigene-xenbase_gene +< 2024-11-22T23:32:00 ncbigene-xenbase_gene togoid-config config/ncbigene-xenbase_gene update # Success: output/tsv/ncbigene-xenbase_gene.tsv is updated -> 2024-11-16T04:40:01 ncbigene-xenbase_gene +> 2024-11-22T23:33:19 ncbigene-xenbase_gene Rule for TSV (output/tsv/ncbigene-xenbase_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-xenbase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:40:01 +0900 +timestamp: 2024-11-22 23:33:19 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:40:01 +0900) -latest-prerequisite time: 2024-11-16 04:40:01 +0900 +--prepare:ncbigene (2024-11-22 23:33:19 +0900) +latest-prerequisite time: 2024-11-22 23:33:19 +0900 ................................ ### Update TSV for ncbigene-zfin_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-zfin_gene.tsv is newer than config/ncbigene-zfin_gene/config.yaml # File output/tsv/ncbigene-zfin_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-zfin_gene/config.yaml => output/tsv/ncbigene-zfin_gene.tsv -< 2024-11-16T04:40:01 ncbigene-zfin_gene +< 2024-11-22T23:33:19 ncbigene-zfin_gene togoid-config config/ncbigene-zfin_gene update # Success: output/tsv/ncbigene-zfin_gene.tsv is updated -> 2024-11-16T04:41:20 ncbigene-zfin_gene +> 2024-11-22T23:34:38 ncbigene-zfin_gene Rule for TSV (output/tsv/ncbigene-zfin_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-zfin_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:41:20 +0900 +timestamp: 2024-11-22 23:34:37 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-16 04:41:20 +0900) -latest-prerequisite time: 2024-11-16 04:41:20 +0900 +--prepare:ncbigene (2024-11-22 23:34:38 +0900) +latest-prerequisite time: 2024-11-22 23:34:38 +0900 ................................ ### Update TSV for ncit_disease-ncit_tissue if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncit_disease-ncit_tissue.tsv is newer than config/ncit_disease-ncit_tissue/config.yaml # File output/tsv/ncit_disease-ncit_tissue.tsv has no timestamp file -# File output/tsv/ncit_disease-ncit_tissue.tsv is created 7.28608265615272 days ago (will be updated when >5 days) +# File output/tsv/ncit_disease-ncit_tissue.tsv is created 6.7869741528505445 days ago (will be updated when >5 days) ## Update config/ncit_disease-ncit_tissue/config.yaml => output/tsv/ncit_disease-ncit_tissue.tsv -< 2024-11-16T04:41:20 ncit_disease-ncit_tissue +< 2024-11-22T23:34:38 ncit_disease-ncit_tissue togoid-config config/ncit_disease-ncit_tissue update # Success: output/tsv/ncit_disease-ncit_tissue.tsv is updated -> 2024-11-16T04:41:23 ncit_disease-ncit_tissue +> 2024-11-22T23:34:42 ncit_disease-ncit_tissue Rule for TSV (output/tsv/ncit_disease-ncit_tissue.tsv) ------------------------------ Investigating output/tsv/ncit_disease-ncit_tissue.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:41:23 +0900 +timestamp: 2024-11-22 23:34:42 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for oma_protein-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3419,8 +3470,8 @@ task needed: true timestamp: 2024-09-27 22:31:53 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-11-16 04:41:23 +0900) -latest-prerequisite time: 2024-11-16 04:41:23 +0900 +--prepare:oma_protein (2024-11-22 23:34:42 +0900) +latest-prerequisite time: 2024-11-22 23:34:42 +0900 ................................ ### Update TSV for oma_protein-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3435,8 +3486,8 @@ task needed: true timestamp: 2024-09-27 22:39:06 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-11-16 04:41:23 +0900) -latest-prerequisite time: 2024-11-16 04:41:23 +0900 +--prepare:oma_protein (2024-11-22 23:34:42 +0900) +latest-prerequisite time: 2024-11-22 23:34:42 +0900 ................................ ### Update TSV for oma_protein-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3451,8 +3502,8 @@ task needed: true timestamp: 2024-09-27 22:39:32 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-11-16 04:41:23 +0900) -latest-prerequisite time: 2024-11-16 04:41:23 +0900 +--prepare:oma_protein (2024-11-22 23:34:42 +0900) +latest-prerequisite time: 2024-11-22 23:34:42 +0900 ................................ ### Update TSV for oma_protein-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3467,301 +3518,301 @@ task needed: true timestamp: 2024-09-27 22:39:39 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-11-16 04:41:23 +0900) -latest-prerequisite time: 2024-11-16 04:41:23 +0900 +--prepare:oma_protein (2024-11-22 23:34:42 +0900) +latest-prerequisite time: 2024-11-22 23:34:42 +0900 ................................ ### Update TSV for orphanet_gene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-ensembl_gene.tsv is newer than config/orphanet_gene-ensembl_gene/config.yaml # File output/tsv/orphanet_gene-ensembl_gene.tsv has no timestamp file -# File output/tsv/orphanet_gene-ensembl_gene.tsv is created 7.286110747753993 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-ensembl_gene.tsv is created 6.78701653986904 days ago (will be updated when >5 days) ## Update config/orphanet_gene-ensembl_gene/config.yaml => output/tsv/orphanet_gene-ensembl_gene.tsv -< 2024-11-16T04:41:23 orphanet_gene-ensembl_gene +< 2024-11-22T23:34:42 orphanet_gene-ensembl_gene togoid-config config/orphanet_gene-ensembl_gene update # Success: output/tsv/orphanet_gene-ensembl_gene.tsv is updated -> 2024-11-16T04:41:24 orphanet_gene-ensembl_gene +> 2024-11-22T23:34:42 orphanet_gene-ensembl_gene Rule for TSV (output/tsv/orphanet_gene-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-ensembl_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:41:24 +0900 +timestamp: 2024-11-22 23:34:42 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for orphanet_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-hgnc.tsv is newer than config/orphanet_gene-hgnc/config.yaml # File output/tsv/orphanet_gene-hgnc.tsv has no timestamp file -# File output/tsv/orphanet_gene-hgnc.tsv is created 7.286112359465313 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-hgnc.tsv is created 6.787019330745069 days ago (will be updated when >5 days) ## Update config/orphanet_gene-hgnc/config.yaml => output/tsv/orphanet_gene-hgnc.tsv -< 2024-11-16T04:41:24 orphanet_gene-hgnc +< 2024-11-22T23:34:42 orphanet_gene-hgnc togoid-config config/orphanet_gene-hgnc update # Success: output/tsv/orphanet_gene-hgnc.tsv is updated -> 2024-11-16T04:41:24 orphanet_gene-hgnc +> 2024-11-22T23:34:43 orphanet_gene-hgnc Rule for TSV (output/tsv/orphanet_gene-hgnc.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-hgnc.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:41:24 +0900 +timestamp: 2024-11-22 23:34:43 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for orphanet_gene-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-omim_gene.tsv is newer than config/orphanet_gene-omim_gene/config.yaml # File output/tsv/orphanet_gene-omim_gene.tsv has no timestamp file -# File output/tsv/orphanet_gene-omim_gene.tsv is created 7.286112389903831 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-omim_gene.tsv is created 6.7870191883052895 days ago (will be updated when >5 days) ## Update config/orphanet_gene-omim_gene/config.yaml => output/tsv/orphanet_gene-omim_gene.tsv -< 2024-11-16T04:41:24 orphanet_gene-omim_gene +< 2024-11-22T23:34:43 orphanet_gene-omim_gene togoid-config config/orphanet_gene-omim_gene update # Success: output/tsv/orphanet_gene-omim_gene.tsv is updated -> 2024-11-16T04:41:24 orphanet_gene-omim_gene +> 2024-11-22T23:34:43 orphanet_gene-omim_gene Rule for TSV (output/tsv/orphanet_gene-omim_gene.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-omim_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:41:24 +0900 +timestamp: 2024-11-22 23:34:43 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for orphanet_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-uniprot.tsv is newer than config/orphanet_gene-uniprot/config.yaml # File output/tsv/orphanet_gene-uniprot.tsv has no timestamp file -# File output/tsv/orphanet_gene-uniprot.tsv is created 7.286112227801528 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-uniprot.tsv is created 6.787019576823565 days ago (will be updated when >5 days) ## Update config/orphanet_gene-uniprot/config.yaml => output/tsv/orphanet_gene-uniprot.tsv -< 2024-11-16T04:41:24 orphanet_gene-uniprot +< 2024-11-22T23:34:43 orphanet_gene-uniprot togoid-config config/orphanet_gene-uniprot update # Success: output/tsv/orphanet_gene-uniprot.tsv is updated -> 2024-11-16T04:41:25 orphanet_gene-uniprot +> 2024-11-22T23:34:44 orphanet_gene-uniprot Rule for TSV (output/tsv/orphanet_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:41:25 +0900 +timestamp: 2024-11-22 23:34:44 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for orphanet_phenotype-meddra if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-meddra.tsv is newer than config/orphanet_phenotype-meddra/config.yaml # File output/tsv/orphanet_phenotype-meddra.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-meddra.tsv is created 7.286111742879236 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-meddra.tsv is created 6.787019881587292 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-meddra/config.yaml => output/tsv/orphanet_phenotype-meddra.tsv -< 2024-11-16T04:41:25 orphanet_phenotype-meddra +< 2024-11-22T23:34:44 orphanet_phenotype-meddra togoid-config config/orphanet_phenotype-meddra update # Success: output/tsv/orphanet_phenotype-meddra.tsv is updated -> 2024-11-16T04:41:25 orphanet_phenotype-meddra +> 2024-11-22T23:34:44 orphanet_phenotype-meddra Rule for TSV (output/tsv/orphanet_phenotype-meddra.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-meddra.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:41:25 +0900 +timestamp: 2024-11-22 23:34:44 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for orphanet_phenotype-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-mesh.tsv is newer than config/orphanet_phenotype-mesh/config.yaml # File output/tsv/orphanet_phenotype-mesh.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-mesh.tsv is created 7.286111352386459 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-mesh.tsv is created 6.787020122000973 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-mesh/config.yaml => output/tsv/orphanet_phenotype-mesh.tsv -< 2024-11-16T04:41:25 orphanet_phenotype-mesh +< 2024-11-22T23:34:44 orphanet_phenotype-mesh togoid-config config/orphanet_phenotype-mesh update # Success: output/tsv/orphanet_phenotype-mesh.tsv is updated -> 2024-11-16T04:41:26 orphanet_phenotype-mesh +> 2024-11-22T23:34:44 orphanet_phenotype-mesh Rule for TSV (output/tsv/orphanet_phenotype-mesh.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-mesh.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:41:26 +0900 +timestamp: 2024-11-22 23:34:44 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for orphanet_phenotype-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-omim_phenotype.tsv is newer than config/orphanet_phenotype-omim_phenotype/config.yaml # File output/tsv/orphanet_phenotype-omim_phenotype.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-omim_phenotype.tsv is created 7.286111042084676 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-omim_phenotype.tsv is created 6.78701995590117 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-omim_phenotype/config.yaml => output/tsv/orphanet_phenotype-omim_phenotype.tsv -< 2024-11-16T04:41:26 orphanet_phenotype-omim_phenotype +< 2024-11-22T23:34:44 orphanet_phenotype-omim_phenotype togoid-config config/orphanet_phenotype-omim_phenotype update # Success: output/tsv/orphanet_phenotype-omim_phenotype.tsv is updated -> 2024-11-16T04:41:26 orphanet_phenotype-omim_phenotype +> 2024-11-22T23:34:45 orphanet_phenotype-omim_phenotype Rule for TSV (output/tsv/orphanet_phenotype-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-omim_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:41:26 +0900 +timestamp: 2024-11-22 23:34:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for orphanet_phenotype-orphanet_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-orphanet_gene.tsv is newer than config/orphanet_phenotype-orphanet_gene/config.yaml # File output/tsv/orphanet_phenotype-orphanet_gene.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-orphanet_gene.tsv is created 7.2861104212154855 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-orphanet_gene.tsv is created 6.787019535045093 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-orphanet_gene/config.yaml => output/tsv/orphanet_phenotype-orphanet_gene.tsv -< 2024-11-16T04:41:26 orphanet_phenotype-orphanet_gene +< 2024-11-22T23:34:45 orphanet_phenotype-orphanet_gene togoid-config config/orphanet_phenotype-orphanet_gene update # Success: output/tsv/orphanet_phenotype-orphanet_gene.tsv is updated -> 2024-11-16T04:41:26 orphanet_phenotype-orphanet_gene +> 2024-11-22T23:34:45 orphanet_phenotype-orphanet_gene Rule for TSV (output/tsv/orphanet_phenotype-orphanet_gene.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-orphanet_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:41:26 +0900 +timestamp: 2024-11-22 23:34:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pdb-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-go.tsv is newer than config/pdb-go/config.yaml # File output/tsv/pdb-go.tsv has no timestamp file -# File output/tsv/pdb-go.tsv is created 7.286068411187813 days ago (will be updated when >5 days) +# File output/tsv/pdb-go.tsv is created 6.78697856452397 days ago (will be updated when >5 days) ## Update config/pdb-go/config.yaml => output/tsv/pdb-go.tsv -< 2024-11-16T04:41:26 pdb-go +< 2024-11-22T23:34:45 pdb-go togoid-config config/pdb-go update # Success: output/tsv/pdb-go.tsv is updated -> 2024-11-16T04:41:30 pdb-go +> 2024-11-22T23:34:50 pdb-go Rule for TSV (output/tsv/pdb-go.tsv) ------------------------------ Investigating output/tsv/pdb-go.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:41:30 +0900 +timestamp: 2024-11-22 23:34:50 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pdb-interpro if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-interpro.tsv is newer than config/pdb-interpro/config.yaml # File output/tsv/pdb-interpro.tsv has no timestamp file -# File output/tsv/pdb-interpro.tsv is created 7.286097025521748 days ago (will be updated when >5 days) +# File output/tsv/pdb-interpro.tsv is created 6.787008985259235 days ago (will be updated when >5 days) ## Update config/pdb-interpro/config.yaml => output/tsv/pdb-interpro.tsv -< 2024-11-16T04:41:30 pdb-interpro +< 2024-11-22T23:34:50 pdb-interpro togoid-config config/pdb-interpro update # Success: output/tsv/pdb-interpro.tsv is updated -> 2024-11-16T04:41:32 pdb-interpro +> 2024-11-22T23:34:51 pdb-interpro Rule for TSV (output/tsv/pdb-interpro.tsv) ------------------------------ Investigating output/tsv/pdb-interpro.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:41:32 +0900 +timestamp: 2024-11-22 23:34:51 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pdb-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-pdb_ccd.tsv is newer than config/pdb-pdb_ccd/config.yaml # File output/tsv/pdb-pdb_ccd.tsv has no timestamp file -# File output/tsv/pdb-pdb_ccd.tsv is created 7.286101603357304 days ago (will be updated when >5 days) +# File output/tsv/pdb-pdb_ccd.tsv is created 6.787013734325497 days ago (will be updated when >5 days) ## Update config/pdb-pdb_ccd/config.yaml => output/tsv/pdb-pdb_ccd.tsv -< 2024-11-16T04:41:32 pdb-pdb_ccd +< 2024-11-22T23:34:51 pdb-pdb_ccd togoid-config config/pdb-pdb_ccd update # Success: output/tsv/pdb-pdb_ccd.tsv is updated -> 2024-11-16T04:41:33 pdb-pdb_ccd +> 2024-11-22T23:34:52 pdb-pdb_ccd Rule for TSV (output/tsv/pdb-pdb_ccd.tsv) ------------------------------ Investigating output/tsv/pdb-pdb_ccd.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:41:33 +0900 +timestamp: 2024-11-22 23:34:52 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pdb-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-pfam.tsv is newer than config/pdb-pfam/config.yaml # File output/tsv/pdb-pfam.tsv has no timestamp file -# File output/tsv/pdb-pfam.tsv is created 7.286104478156158 days ago (will be updated when >5 days) +# File output/tsv/pdb-pfam.tsv is created 6.787015503341702 days ago (will be updated when >5 days) ## Update config/pdb-pfam/config.yaml => output/tsv/pdb-pfam.tsv -< 2024-11-16T04:41:33 pdb-pfam +< 2024-11-22T23:34:52 pdb-pfam togoid-config config/pdb-pfam update # Success: output/tsv/pdb-pfam.tsv is updated -> 2024-11-16T04:41:34 pdb-pfam +> 2024-11-22T23:34:53 pdb-pfam Rule for TSV (output/tsv/pdb-pfam.tsv) ------------------------------ Investigating output/tsv/pdb-pfam.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:41:34 +0900 +timestamp: 2024-11-22 23:34:53 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pdb-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-uniprot.tsv is newer than config/pdb-uniprot/config.yaml # File output/tsv/pdb-uniprot.tsv has no timestamp file -# File output/tsv/pdb-uniprot.tsv is created 7.286106205281805 days ago (will be updated when >5 days) +# File output/tsv/pdb-uniprot.tsv is created 6.787013813753368 days ago (will be updated when >5 days) ## Update config/pdb-uniprot/config.yaml => output/tsv/pdb-uniprot.tsv -< 2024-11-16T04:41:34 pdb-uniprot +< 2024-11-22T23:34:53 pdb-uniprot togoid-config config/pdb-uniprot update # Success: output/tsv/pdb-uniprot.tsv is updated -> 2024-11-16T04:41:35 pdb-uniprot +> 2024-11-22T23:34:54 pdb-uniprot Rule for TSV (output/tsv/pdb-uniprot.tsv) ------------------------------ Investigating output/tsv/pdb-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:41:35 +0900 +timestamp: 2024-11-22 23:34:54 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pmc-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pmc-pubmed.tsv is newer than config/pmc-pubmed/config.yaml # File output/tsv/pmc-pubmed.tsv is older than input/pmc/download.lock ## Update config/pmc-pubmed/config.yaml => output/tsv/pmc-pubmed.tsv -< 2024-11-16T04:41:35 pmc-pubmed +< 2024-11-22T23:34:54 pmc-pubmed togoid-config config/pmc-pubmed update # Success: output/tsv/pmc-pubmed.tsv is updated -> 2024-11-16T04:47:23 pmc-pubmed +> 2024-11-22T23:40:38 pmc-pubmed Rule for TSV (output/tsv/pmc-pubmed.tsv) ------------------------------ Investigating output/tsv/pmc-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:47:23 +0900 +timestamp: 2024-11-22 23:40:38 +0900 pre-requisites: --output/tsv/ () ---prepare:pmc (2024-11-16 04:47:23 +0900) -latest-prerequisite time: 2024-11-16 04:47:23 +0900 +--prepare:pmc (2024-11-22 23:40:38 +0900) +latest-prerequisite time: 2024-11-22 23:40:38 +0900 ................................ ### Update TSV for prosite-prosite_prorule if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3776,521 +3827,517 @@ task needed: true timestamp: 2024-10-07 01:37:39 +0900 pre-requisites: --output/tsv/ () ---prepare:prosite (2024-11-16 04:47:23 +0900) -latest-prerequisite time: 2024-11-16 04:47:23 +0900 +--prepare:prosite (2024-11-22 23:40:38 +0900) +latest-prerequisite time: 2024-11-22 23:40:38 +0900 ................................ ### Update TSV for pubchem_compound-atc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-atc.tsv is newer than config/pubchem_compound-atc/config.yaml # File output/tsv/pubchem_compound-atc.tsv has no timestamp file -# File output/tsv/pubchem_compound-atc.tsv is created 7.286148236665695 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-atc.tsv is created 6.786981608677755 days ago (will be updated when >5 days) ## Update config/pubchem_compound-atc/config.yaml => output/tsv/pubchem_compound-atc.tsv -< 2024-11-16T04:47:23 pubchem_compound-atc +< 2024-11-22T23:40:38 pubchem_compound-atc togoid-config config/pubchem_compound-atc update # Success: output/tsv/pubchem_compound-atc.tsv is updated -> 2024-11-16T04:47:23 pubchem_compound-atc +> 2024-11-22T23:40:39 pubchem_compound-atc Rule for TSV (output/tsv/pubchem_compound-atc.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-atc.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:47:23 +0900 +timestamp: 2024-11-22 23:40:39 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pubchem_compound-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-chebi.tsv is newer than config/pubchem_compound-chebi/config.yaml # File output/tsv/pubchem_compound-chebi.tsv has no timestamp file -# File output/tsv/pubchem_compound-chebi.tsv is created 7.286144548654213 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-chebi.tsv is created 6.786980428810127 days ago (will be updated when >5 days) ## Update config/pubchem_compound-chebi/config.yaml => output/tsv/pubchem_compound-chebi.tsv -< 2024-11-16T04:47:23 pubchem_compound-chebi +< 2024-11-22T23:40:39 pubchem_compound-chebi togoid-config config/pubchem_compound-chebi update # Success: output/tsv/pubchem_compound-chebi.tsv is updated -> 2024-11-16T04:47:24 pubchem_compound-chebi +> 2024-11-22T23:40:40 pubchem_compound-chebi Rule for TSV (output/tsv/pubchem_compound-chebi.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-chebi.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:47:24 +0900 +timestamp: 2024-11-22 23:40:40 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pubchem_compound-chembl_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-chembl_compound.tsv is newer than config/pubchem_compound-chembl_compound/config.yaml # File output/tsv/pubchem_compound-chembl_compound.tsv has no timestamp file -# File output/tsv/pubchem_compound-chembl_compound.tsv is created 7.2860744216462265 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-chembl_compound.tsv is created 6.786931693830799 days ago (will be updated when >5 days) ## Update config/pubchem_compound-chembl_compound/config.yaml => output/tsv/pubchem_compound-chembl_compound.tsv -< 2024-11-16T04:47:24 pubchem_compound-chembl_compound +< 2024-11-22T23:40:40 pubchem_compound-chembl_compound togoid-config config/pubchem_compound-chembl_compound update # Success: output/tsv/pubchem_compound-chembl_compound.tsv is updated -> 2024-11-16T04:47:29 pubchem_compound-chembl_compound +> 2024-11-22T23:40:46 pubchem_compound-chembl_compound Rule for TSV (output/tsv/pubchem_compound-chembl_compound.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-chembl_compound.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:47:29 +0900 +timestamp: 2024-11-22 23:40:46 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pubchem_compound-drugbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-drugbank.tsv is newer than config/pubchem_compound-drugbank/config.yaml # File output/tsv/pubchem_compound-drugbank.tsv has no timestamp file -# File output/tsv/pubchem_compound-drugbank.tsv is created 7.286126421831169 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-drugbank.tsv is created 6.787002745954953 days ago (will be updated when >5 days) ## Update config/pubchem_compound-drugbank/config.yaml => output/tsv/pubchem_compound-drugbank.tsv -< 2024-11-16T04:47:29 pubchem_compound-drugbank +< 2024-11-22T23:40:46 pubchem_compound-drugbank togoid-config config/pubchem_compound-drugbank update # Success: output/tsv/pubchem_compound-drugbank.tsv is updated -> 2024-11-16T04:47:29 pubchem_compound-drugbank +> 2024-11-22T23:40:46 pubchem_compound-drugbank Rule for TSV (output/tsv/pubchem_compound-drugbank.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-drugbank.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:47:29 +0900 +timestamp: 2024-11-22 23:40:46 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pubchem_compound-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-glytoucan.tsv is newer than config/pubchem_compound-glytoucan/config.yaml # File output/tsv/pubchem_compound-glytoucan.tsv has no timestamp file -# File output/tsv/pubchem_compound-glytoucan.tsv is created 7.286124291826758 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-glytoucan.tsv is created 6.787001337453808 days ago (will be updated when >5 days) ## Update config/pubchem_compound-glytoucan/config.yaml => output/tsv/pubchem_compound-glytoucan.tsv -< 2024-11-16T04:47:29 pubchem_compound-glytoucan +< 2024-11-22T23:40:46 pubchem_compound-glytoucan togoid-config config/pubchem_compound-glytoucan update # Success: output/tsv/pubchem_compound-glytoucan.tsv is updated -> 2024-11-16T04:47:30 pubchem_compound-glytoucan +> 2024-11-22T23:40:47 pubchem_compound-glytoucan Rule for TSV (output/tsv/pubchem_compound-glytoucan.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-glytoucan.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:47:30 +0900 +timestamp: 2024-11-22 23:40:47 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pubchem_compound-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-inchi_key.tsv is newer than config/pubchem_compound-inchi_key/config.yaml # File output/tsv/pubchem_compound-inchi_key.tsv has no timestamp file -# File output/tsv/pubchem_compound-inchi_key.tsv is created 7.28073949003544 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-inchi_key.tsv is created 6.782541012860695 days ago (will be updated when >5 days) ## Update config/pubchem_compound-inchi_key/config.yaml => output/tsv/pubchem_compound-inchi_key.tsv -< 2024-11-16T04:47:30 pubchem_compound-inchi_key +< 2024-11-22T23:40:47 pubchem_compound-inchi_key togoid-config config/pubchem_compound-inchi_key update # Success: output/tsv/pubchem_compound-inchi_key.tsv is updated -> 2024-11-16T04:53:56 pubchem_compound-inchi_key +> 2024-11-22T23:49:45 pubchem_compound-inchi_key Rule for TSV (output/tsv/pubchem_compound-inchi_key.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-inchi_key.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:53:55 +0900 +timestamp: 2024-11-22 23:49:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pubchem_pathway-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-ncbigene.tsv is newer than config/pubchem_pathway-ncbigene/config.yaml # File output/tsv/pubchem_pathway-ncbigene.tsv has no timestamp file -# File output/tsv/pubchem_pathway-ncbigene.tsv is created 7.285198984671967 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-ncbigene.tsv is created 6.788764454904548 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-ncbigene/config.yaml => output/tsv/pubchem_pathway-ncbigene.tsv -< 2024-11-16T04:53:56 pubchem_pathway-ncbigene +< 2024-11-22T23:49:45 pubchem_pathway-ncbigene togoid-config config/pubchem_pathway-ncbigene update # Success: output/tsv/pubchem_pathway-ncbigene.tsv is updated -> 2024-11-16T04:53:56 pubchem_pathway-ncbigene +> 2024-11-22T23:49:46 pubchem_pathway-ncbigene Rule for TSV (output/tsv/pubchem_pathway-ncbigene.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:53:56 +0900 +timestamp: 2024-11-22 23:49:46 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pubchem_pathway-pathbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-pathbank.tsv is newer than config/pubchem_pathway-pathbank/config.yaml # File output/tsv/pubchem_pathway-pathbank.tsv has no timestamp file -# File output/tsv/pubchem_pathway-pathbank.tsv is created 7.285199148234491 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-pathbank.tsv is created 6.788765799928484 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-pathbank/config.yaml => output/tsv/pubchem_pathway-pathbank.tsv -< 2024-11-16T04:53:56 pubchem_pathway-pathbank +< 2024-11-22T23:49:46 pubchem_pathway-pathbank togoid-config config/pubchem_pathway-pathbank update # Success: output/tsv/pubchem_pathway-pathbank.tsv is updated -> 2024-11-16T04:53:57 pubchem_pathway-pathbank +> 2024-11-22T23:49:46 pubchem_pathway-pathbank Rule for TSV (output/tsv/pubchem_pathway-pathbank.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-pathbank.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:53:57 +0900 +timestamp: 2024-11-22 23:49:46 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pubchem_pathway-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-pubchem_compound.tsv is newer than config/pubchem_pathway-pubchem_compound/config.yaml # File output/tsv/pubchem_pathway-pubchem_compound.tsv has no timestamp file -# File output/tsv/pubchem_pathway-pubchem_compound.tsv is created 7.285171220437489 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-pubchem_compound.tsv is created 6.788737259048298 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-pubchem_compound/config.yaml => output/tsv/pubchem_pathway-pubchem_compound.tsv -< 2024-11-16T04:53:57 pubchem_pathway-pubchem_compound +< 2024-11-22T23:49:46 pubchem_pathway-pubchem_compound togoid-config config/pubchem_pathway-pubchem_compound update # Success: output/tsv/pubchem_pathway-pubchem_compound.tsv is updated -> 2024-11-16T04:54:00 pubchem_pathway-pubchem_compound +> 2024-11-22T23:49:49 pubchem_pathway-pubchem_compound Rule for TSV (output/tsv/pubchem_pathway-pubchem_compound.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-pubchem_compound.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:54:00 +0900 +timestamp: 2024-11-22 23:49:49 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pubchem_pathway-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-reactome_pathway.tsv is newer than config/pubchem_pathway-reactome_pathway/config.yaml # File output/tsv/pubchem_pathway-reactome_pathway.tsv has no timestamp file -# File output/tsv/pubchem_pathway-reactome_pathway.tsv is created 7.285201382162524 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-reactome_pathway.tsv is created 6.788765318872511 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-reactome_pathway/config.yaml => output/tsv/pubchem_pathway-reactome_pathway.tsv -< 2024-11-16T04:54:00 pubchem_pathway-reactome_pathway +< 2024-11-22T23:49:49 pubchem_pathway-reactome_pathway togoid-config config/pubchem_pathway-reactome_pathway update # Success: output/tsv/pubchem_pathway-reactome_pathway.tsv is updated -> 2024-11-16T04:54:00 pubchem_pathway-reactome_pathway +> 2024-11-22T23:49:50 pubchem_pathway-reactome_pathway Rule for TSV (output/tsv/pubchem_pathway-reactome_pathway.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-reactome_pathway.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:54:00 +0900 +timestamp: 2024-11-22 23:49:50 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pubchem_pathway-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-uniprot.tsv is newer than config/pubchem_pathway-uniprot/config.yaml # File output/tsv/pubchem_pathway-uniprot.tsv has no timestamp file -# File output/tsv/pubchem_pathway-uniprot.tsv is created 7.285165847133321 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-uniprot.tsv is created 6.788749721923438 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-uniprot/config.yaml => output/tsv/pubchem_pathway-uniprot.tsv -< 2024-11-16T04:54:00 pubchem_pathway-uniprot +< 2024-11-22T23:49:50 pubchem_pathway-uniprot togoid-config config/pubchem_pathway-uniprot update # Success: output/tsv/pubchem_pathway-uniprot.tsv is updated -> 2024-11-16T04:54:02 pubchem_pathway-uniprot +> 2024-11-22T23:49:51 pubchem_pathway-uniprot Rule for TSV (output/tsv/pubchem_pathway-uniprot.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:54:02 +0900 +timestamp: 2024-11-22 23:49:51 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for pubchem_pathway-wikipathways if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-wikipathways.tsv is newer than config/pubchem_pathway-wikipathways/config.yaml # File output/tsv/pubchem_pathway-wikipathways.tsv has no timestamp file -# File output/tsv/pubchem_pathway-wikipathways.tsv is created 7.285180063316794 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-wikipathways.tsv is created 6.788763437736817 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-wikipathways/config.yaml => output/tsv/pubchem_pathway-wikipathways.tsv -< 2024-11-16T04:54:02 pubchem_pathway-wikipathways +< 2024-11-22T23:49:51 pubchem_pathway-wikipathways togoid-config config/pubchem_pathway-wikipathways update # Success: output/tsv/pubchem_pathway-wikipathways.tsv is updated -> 2024-11-16T04:54:02 pubchem_pathway-wikipathways +> 2024-11-22T23:49:52 pubchem_pathway-wikipathways Rule for TSV (output/tsv/pubchem_pathway-wikipathways.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-wikipathways.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 04:54:02 +0900 +timestamp: 2024-11-22 23:49:52 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for reactome_pathway-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-chebi.tsv is newer than config/reactome_pathway-chebi/config.yaml # File output/tsv/reactome_pathway-chebi.tsv has no timestamp file -# File output/tsv/reactome_pathway-chebi.tsv is created 7.285174166141621 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-chebi.tsv is created 6.788756738431354 days ago (will be updated when >5 days) ## Update config/reactome_pathway-chebi/config.yaml => output/tsv/reactome_pathway-chebi.tsv -< 2024-11-16T04:54:02 reactome_pathway-chebi +< 2024-11-22T23:49:52 reactome_pathway-chebi togoid-config config/reactome_pathway-chebi update # Success: output/tsv/reactome_pathway-chebi.tsv is updated -> 2024-11-16T04:54:03 reactome_pathway-chebi +> 2024-11-22T23:49:52 reactome_pathway-chebi Rule for TSV (output/tsv/reactome_pathway-chebi.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:54:03 +0900 +timestamp: 2024-11-22 23:49:52 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-16 04:54:03 +0900) -latest-prerequisite time: 2024-11-16 04:54:03 +0900 +--prepare:reactome (2024-11-22 23:49:52 +0900) +latest-prerequisite time: 2024-11-22 23:49:52 +0900 ................................ ### Update TSV for reactome_pathway-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-go.tsv is newer than config/reactome_pathway-go/config.yaml # File output/tsv/reactome_pathway-go.tsv has no timestamp file -# File output/tsv/reactome_pathway-go.tsv is created 7.285178221855232 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-go.tsv is created 6.788757989932442 days ago (will be updated when >5 days) ## Update config/reactome_pathway-go/config.yaml => output/tsv/reactome_pathway-go.tsv -< 2024-11-16T04:54:03 reactome_pathway-go +< 2024-11-22T23:49:52 reactome_pathway-go togoid-config config/reactome_pathway-go update # Success: output/tsv/reactome_pathway-go.tsv is updated -> 2024-11-16T04:54:04 reactome_pathway-go +> 2024-11-22T23:49:53 reactome_pathway-go Rule for TSV (output/tsv/reactome_pathway-go.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:54:04 +0900 +timestamp: 2024-11-22 23:49:53 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-16 04:54:04 +0900) -latest-prerequisite time: 2024-11-16 04:54:04 +0900 +--prepare:reactome (2024-11-22 23:49:53 +0900) +latest-prerequisite time: 2024-11-22 23:49:53 +0900 ................................ ### Update TSV for reactome_pathway-iuphar_ligand if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-iuphar_ligand.tsv is newer than config/reactome_pathway-iuphar_ligand/config.yaml # File output/tsv/reactome_pathway-iuphar_ligand.tsv has no timestamp file -# File output/tsv/reactome_pathway-iuphar_ligand.tsv is created 7.2851790360637505 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-iuphar_ligand.tsv is created 6.7887591076720595 days ago (will be updated when >5 days) ## Update config/reactome_pathway-iuphar_ligand/config.yaml => output/tsv/reactome_pathway-iuphar_ligand.tsv -< 2024-11-16T04:54:04 reactome_pathway-iuphar_ligand +< 2024-11-22T23:49:53 reactome_pathway-iuphar_ligand togoid-config config/reactome_pathway-iuphar_ligand update # Success: output/tsv/reactome_pathway-iuphar_ligand.tsv is updated -> 2024-11-16T04:54:04 reactome_pathway-iuphar_ligand +> 2024-11-22T23:49:53 reactome_pathway-iuphar_ligand Rule for TSV (output/tsv/reactome_pathway-iuphar_ligand.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-iuphar_ligand.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:54:04 +0900 +timestamp: 2024-11-22 23:49:53 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-16 04:54:04 +0900) -latest-prerequisite time: 2024-11-16 04:54:04 +0900 +--prepare:reactome (2024-11-22 23:49:53 +0900) +latest-prerequisite time: 2024-11-22 23:49:53 +0900 ................................ ### Update TSV for reactome_pathway-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-mirbase.tsv is newer than config/reactome_pathway-mirbase/config.yaml # File output/tsv/reactome_pathway-mirbase.tsv has no timestamp file -# File output/tsv/reactome_pathway-mirbase.tsv is created 7.2851808898720956 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-mirbase.tsv is created 6.788758900232894 days ago (will be updated when >5 days) ## Update config/reactome_pathway-mirbase/config.yaml => output/tsv/reactome_pathway-mirbase.tsv -< 2024-11-16T04:54:04 reactome_pathway-mirbase +< 2024-11-22T23:49:53 reactome_pathway-mirbase togoid-config config/reactome_pathway-mirbase update # Success: output/tsv/reactome_pathway-mirbase.tsv is updated -> 2024-11-16T04:54:04 reactome_pathway-mirbase +> 2024-11-22T23:49:53 reactome_pathway-mirbase Rule for TSV (output/tsv/reactome_pathway-mirbase.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:54:04 +0900 +timestamp: 2024-11-22 23:49:53 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-16 04:54:04 +0900) -latest-prerequisite time: 2024-11-16 04:54:04 +0900 +--prepare:reactome (2024-11-22 23:49:53 +0900) +latest-prerequisite time: 2024-11-22 23:49:53 +0900 ................................ ### Update TSV for reactome_pathway-reactome_reaction if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-reactome_reaction.tsv is newer than config/reactome_pathway-reactome_reaction/config.yaml # File output/tsv/reactome_pathway-reactome_reaction.tsv has no timestamp file -# File output/tsv/reactome_pathway-reactome_reaction.tsv is created 7.28516808027044 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-reactome_reaction.tsv is created 6.788748118984351 days ago (will be updated when >5 days) ## Update config/reactome_pathway-reactome_reaction/config.yaml => output/tsv/reactome_pathway-reactome_reaction.tsv -< 2024-11-16T04:54:04 reactome_pathway-reactome_reaction +< 2024-11-22T23:49:53 reactome_pathway-reactome_reaction togoid-config config/reactome_pathway-reactome_reaction update # Success: output/tsv/reactome_pathway-reactome_reaction.tsv is updated -> 2024-11-16T04:54:05 reactome_pathway-reactome_reaction +> 2024-11-22T23:49:54 reactome_pathway-reactome_reaction Rule for TSV (output/tsv/reactome_pathway-reactome_reaction.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-reactome_reaction.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:54:05 +0900 +timestamp: 2024-11-22 23:49:54 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-16 04:54:05 +0900) -latest-prerequisite time: 2024-11-16 04:54:05 +0900 +--prepare:reactome (2024-11-22 23:49:54 +0900) +latest-prerequisite time: 2024-11-22 23:49:54 +0900 ................................ ### Update TSV for reactome_pathway-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-uniprot.tsv is newer than config/reactome_pathway-uniprot/config.yaml # File output/tsv/reactome_pathway-uniprot.tsv has no timestamp file -# File output/tsv/reactome_pathway-uniprot.tsv is created 7.285156686059317 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-uniprot.tsv is created 6.7887377409731835 days ago (will be updated when >5 days) ## Update config/reactome_pathway-uniprot/config.yaml => output/tsv/reactome_pathway-uniprot.tsv -< 2024-11-16T04:54:05 reactome_pathway-uniprot +< 2024-11-22T23:49:54 reactome_pathway-uniprot togoid-config config/reactome_pathway-uniprot update # Success: output/tsv/reactome_pathway-uniprot.tsv is updated -> 2024-11-16T04:54:07 reactome_pathway-uniprot +> 2024-11-22T23:49:56 reactome_pathway-uniprot Rule for TSV (output/tsv/reactome_pathway-uniprot.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:54:07 +0900 +timestamp: 2024-11-22 23:49:56 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-16 04:54:07 +0900) -latest-prerequisite time: 2024-11-16 04:54:07 +0900 +--prepare:reactome (2024-11-22 23:49:56 +0900) +latest-prerequisite time: 2024-11-22 23:49:56 +0900 ................................ ### Update TSV for reactome_reaction-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-chebi.tsv is newer than config/reactome_reaction-chebi/config.yaml # File output/tsv/reactome_reaction-chebi.tsv has no timestamp file -# File output/tsv/reactome_reaction-chebi.tsv is created 7.285170592997743 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-chebi.tsv is created 6.788747493192975 days ago (will be updated when >5 days) ## Update config/reactome_reaction-chebi/config.yaml => output/tsv/reactome_reaction-chebi.tsv -< 2024-11-16T04:54:07 reactome_reaction-chebi +< 2024-11-22T23:49:56 reactome_reaction-chebi togoid-config config/reactome_reaction-chebi update # Success: output/tsv/reactome_reaction-chebi.tsv is updated -> 2024-11-16T04:54:08 reactome_reaction-chebi +> 2024-11-22T23:49:56 reactome_reaction-chebi Rule for TSV (output/tsv/reactome_reaction-chebi.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:54:08 +0900 +timestamp: 2024-11-22 23:49:56 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-16 04:54:08 +0900) -latest-prerequisite time: 2024-11-16 04:54:08 +0900 +--prepare:reactome (2024-11-22 23:49:56 +0900) +latest-prerequisite time: 2024-11-22 23:49:56 +0900 ................................ ### Update TSV for reactome_reaction-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-go.tsv is newer than config/reactome_reaction-go/config.yaml # File output/tsv/reactome_reaction-go.tsv has no timestamp file -# File output/tsv/reactome_reaction-go.tsv is created 7.285171340545301 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-go.tsv is created 6.788748317007708 days ago (will be updated when >5 days) ## Update config/reactome_reaction-go/config.yaml => output/tsv/reactome_reaction-go.tsv -< 2024-11-16T04:54:08 reactome_reaction-go +< 2024-11-22T23:49:56 reactome_reaction-go togoid-config config/reactome_reaction-go update # Success: output/tsv/reactome_reaction-go.tsv is updated -> 2024-11-16T04:54:08 reactome_reaction-go +> 2024-11-22T23:49:57 reactome_reaction-go Rule for TSV (output/tsv/reactome_reaction-go.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:54:08 +0900 +timestamp: 2024-11-22 23:49:57 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-16 04:54:08 +0900) -latest-prerequisite time: 2024-11-16 04:54:08 +0900 +--prepare:reactome (2024-11-22 23:49:57 +0900) +latest-prerequisite time: 2024-11-22 23:49:57 +0900 ................................ ### Update TSV for reactome_reaction-iuphar_ligand if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-iuphar_ligand.tsv is newer than config/reactome_reaction-iuphar_ligand/config.yaml # File output/tsv/reactome_reaction-iuphar_ligand.tsv has no timestamp file -# File output/tsv/reactome_reaction-iuphar_ligand.tsv is created 7.285173279899768 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-iuphar_ligand.tsv is created 6.78874909726567 days ago (will be updated when >5 days) ## Update config/reactome_reaction-iuphar_ligand/config.yaml => output/tsv/reactome_reaction-iuphar_ligand.tsv -< 2024-11-16T04:54:08 reactome_reaction-iuphar_ligand +< 2024-11-22T23:49:57 reactome_reaction-iuphar_ligand togoid-config config/reactome_reaction-iuphar_ligand update # Success: output/tsv/reactome_reaction-iuphar_ligand.tsv is updated -> 2024-11-16T04:54:09 reactome_reaction-iuphar_ligand +> 2024-11-22T23:49:57 reactome_reaction-iuphar_ligand Rule for TSV (output/tsv/reactome_reaction-iuphar_ligand.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-iuphar_ligand.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:54:09 +0900 +timestamp: 2024-11-22 23:49:57 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-16 04:54:09 +0900) -latest-prerequisite time: 2024-11-16 04:54:09 +0900 +--prepare:reactome (2024-11-22 23:49:57 +0900) +latest-prerequisite time: 2024-11-22 23:49:57 +0900 ................................ ### Update TSV for reactome_reaction-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-mirbase.tsv is newer than config/reactome_reaction-mirbase/config.yaml # File output/tsv/reactome_reaction-mirbase.tsv has no timestamp file -# File output/tsv/reactome_reaction-mirbase.tsv is created 7.285174132225208 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-mirbase.tsv is created 6.788749494879086 days ago (will be updated when >5 days) ## Update config/reactome_reaction-mirbase/config.yaml => output/tsv/reactome_reaction-mirbase.tsv -< 2024-11-16T04:54:09 reactome_reaction-mirbase +< 2024-11-22T23:49:57 reactome_reaction-mirbase togoid-config config/reactome_reaction-mirbase update # Success: output/tsv/reactome_reaction-mirbase.tsv is updated -> 2024-11-16T04:54:09 reactome_reaction-mirbase +> 2024-11-22T23:49:57 reactome_reaction-mirbase Rule for TSV (output/tsv/reactome_reaction-mirbase.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:54:09 +0900 +timestamp: 2024-11-22 23:49:57 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-16 04:54:09 +0900) -latest-prerequisite time: 2024-11-16 04:54:09 +0900 +--prepare:reactome (2024-11-22 23:49:57 +0900) +latest-prerequisite time: 2024-11-22 23:49:57 +0900 ................................ ### Update TSV for reactome_reaction-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-uniprot.tsv is newer than config/reactome_reaction-uniprot/config.yaml # File output/tsv/reactome_reaction-uniprot.tsv has no timestamp file -# File output/tsv/reactome_reaction-uniprot.tsv is created 7.285146592465822 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-uniprot.tsv is created 6.7887311320041555 days ago (will be updated when >5 days) ## Update config/reactome_reaction-uniprot/config.yaml => output/tsv/reactome_reaction-uniprot.tsv -< 2024-11-16T04:54:09 reactome_reaction-uniprot +< 2024-11-22T23:49:57 reactome_reaction-uniprot togoid-config config/reactome_reaction-uniprot update # Success: output/tsv/reactome_reaction-uniprot.tsv is updated -> 2024-11-16T04:54:11 reactome_reaction-uniprot +> 2024-11-22T23:49:58 reactome_reaction-uniprot Rule for TSV (output/tsv/reactome_reaction-uniprot.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 04:54:11 +0900 +timestamp: 2024-11-22 23:49:58 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-16 04:54:11 +0900) -latest-prerequisite time: 2024-11-16 04:54:11 +0900 +--prepare:reactome (2024-11-22 23:49:58 +0900) +latest-prerequisite time: 2024-11-22 23:49:58 +0900 ................................ ### Update TSV for refseq_protein-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/refseq_protein-uniprot.tsv is newer than config/refseq_protein-uniprot/config.yaml # File output/tsv/refseq_protein-uniprot.tsv is older than input/refseq_protein/download.lock ## Update config/refseq_protein-uniprot/config.yaml => output/tsv/refseq_protein-uniprot.tsv -< 2024-11-16T04:54:11 refseq_protein-uniprot +< 2024-11-22T23:49:58 refseq_protein-uniprot togoid-config config/refseq_protein-uniprot update # Success: output/tsv/refseq_protein-uniprot.tsv is updated -> 2024-11-16T05:01:00 refseq_protein-uniprot +> 2024-11-22T23:56:25 refseq_protein-uniprot Rule for TSV (output/tsv/refseq_protein-uniprot.tsv) ------------------------------ Investigating output/tsv/refseq_protein-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 05:01:00 +0900 +timestamp: 2024-11-22 23:56:25 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_protein (2024-11-16 05:01:00 +0900) -latest-prerequisite time: 2024-11-16 05:01:00 +0900 +--prepare:refseq_protein (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ -### Update TSV for refseq_rna-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true +### Update TSV for refseq_rna-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/refseq_rna-dbsnp.tsv is newer than config/refseq_rna-dbsnp/config.yaml -# File output/tsv/refseq_rna-dbsnp.tsv is older than input/refseq_rna/download.lock -## Update config/refseq_rna-dbsnp/config.yaml => output/tsv/refseq_rna-dbsnp.tsv -< 2024-11-16T05:01:00 refseq_rna-dbsnp -togoid-config config/refseq_rna-dbsnp update -# Success: output/tsv/refseq_rna-dbsnp.tsv is updated -> 2024-11-16T05:24:22 refseq_rna-dbsnp +# File output/tsv/refseq_rna-dbsnp.tsv is newer than input/refseq_rna/download.lock +# => Preserving output/tsv/refseq_rna-dbsnp.tsv Rule for TSV (output/tsv/refseq_rna-dbsnp.tsv) ------------------------------ Investigating output/tsv/refseq_rna-dbsnp.tsv @@ -4299,18 +4346,14 @@ task needed: true timestamp: 2024-11-16 05:24:22 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-11-16 05:24:22 +0900) -latest-prerequisite time: 2024-11-16 05:24:22 +0900 +--prepare:refseq_rna (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ -### Update TSV for refseq_rna-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true +### Update TSV for refseq_rna-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/refseq_rna-hgnc.tsv is newer than config/refseq_rna-hgnc/config.yaml -# File output/tsv/refseq_rna-hgnc.tsv is older than input/refseq_rna/download.lock -## Update config/refseq_rna-hgnc/config.yaml => output/tsv/refseq_rna-hgnc.tsv -< 2024-11-16T05:24:22 refseq_rna-hgnc -togoid-config config/refseq_rna-hgnc update -# Success: output/tsv/refseq_rna-hgnc.tsv is updated -> 2024-11-16T05:27:15 refseq_rna-hgnc +# File output/tsv/refseq_rna-hgnc.tsv is newer than input/refseq_rna/download.lock +# => Preserving output/tsv/refseq_rna-hgnc.tsv Rule for TSV (output/tsv/refseq_rna-hgnc.tsv) ------------------------------ Investigating output/tsv/refseq_rna-hgnc.tsv @@ -4319,18 +4362,14 @@ task needed: true timestamp: 2024-11-16 05:27:15 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-11-16 05:27:15 +0900) -latest-prerequisite time: 2024-11-16 05:27:15 +0900 +--prepare:refseq_rna (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ -### Update TSV for refseq_rna-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true +### Update TSV for refseq_rna-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/refseq_rna-ncbigene.tsv is newer than config/refseq_rna-ncbigene/config.yaml -# File output/tsv/refseq_rna-ncbigene.tsv is older than input/refseq_rna/download.lock -## Update config/refseq_rna-ncbigene/config.yaml => output/tsv/refseq_rna-ncbigene.tsv -< 2024-11-16T05:27:15 refseq_rna-ncbigene -togoid-config config/refseq_rna-ncbigene update -# Success: output/tsv/refseq_rna-ncbigene.tsv is updated -> 2024-11-16T05:31:03 refseq_rna-ncbigene +# File output/tsv/refseq_rna-ncbigene.tsv is newer than input/refseq_rna/download.lock +# => Preserving output/tsv/refseq_rna-ncbigene.tsv Rule for TSV (output/tsv/refseq_rna-ncbigene.tsv) ------------------------------ Investigating output/tsv/refseq_rna-ncbigene.tsv @@ -4339,18 +4378,14 @@ task needed: true timestamp: 2024-11-16 05:31:03 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-11-16 05:31:03 +0900) -latest-prerequisite time: 2024-11-16 05:31:03 +0900 +--prepare:refseq_rna (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ -### Update TSV for refseq_rna-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true +### Update TSV for refseq_rna-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/refseq_rna-omim_gene.tsv is newer than config/refseq_rna-omim_gene/config.yaml -# File output/tsv/refseq_rna-omim_gene.tsv is older than input/refseq_rna/download.lock -## Update config/refseq_rna-omim_gene/config.yaml => output/tsv/refseq_rna-omim_gene.tsv -< 2024-11-16T05:31:03 refseq_rna-omim_gene -togoid-config config/refseq_rna-omim_gene update -# Success: output/tsv/refseq_rna-omim_gene.tsv is updated -> 2024-11-16T05:32:50 refseq_rna-omim_gene +# File output/tsv/refseq_rna-omim_gene.tsv is newer than input/refseq_rna/download.lock +# => Preserving output/tsv/refseq_rna-omim_gene.tsv Rule for TSV (output/tsv/refseq_rna-omim_gene.tsv) ------------------------------ Investigating output/tsv/refseq_rna-omim_gene.tsv @@ -4359,18 +4394,14 @@ task needed: true timestamp: 2024-11-16 05:32:50 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-11-16 05:32:50 +0900) -latest-prerequisite time: 2024-11-16 05:32:50 +0900 +--prepare:refseq_rna (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ -### Update TSV for refseq_rna-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true +### Update TSV for refseq_rna-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/refseq_rna-pubmed.tsv is newer than config/refseq_rna-pubmed/config.yaml -# File output/tsv/refseq_rna-pubmed.tsv is older than input/refseq_rna/download.lock -## Update config/refseq_rna-pubmed/config.yaml => output/tsv/refseq_rna-pubmed.tsv -< 2024-11-16T05:32:50 refseq_rna-pubmed -togoid-config config/refseq_rna-pubmed update -# Success: output/tsv/refseq_rna-pubmed.tsv is updated -> 2024-11-16T05:34:56 refseq_rna-pubmed +# File output/tsv/refseq_rna-pubmed.tsv is newer than input/refseq_rna/download.lock +# => Preserving output/tsv/refseq_rna-pubmed.tsv Rule for TSV (output/tsv/refseq_rna-pubmed.tsv) ------------------------------ Investigating output/tsv/refseq_rna-pubmed.tsv @@ -4379,18 +4410,14 @@ task needed: true timestamp: 2024-11-16 05:34:56 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-11-16 05:34:56 +0900) -latest-prerequisite time: 2024-11-16 05:34:56 +0900 +--prepare:refseq_rna (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ -### Update TSV for refseq_rna-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true +### Update TSV for refseq_rna-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/refseq_rna-refseq_protein.tsv is newer than config/refseq_rna-refseq_protein/config.yaml -# File output/tsv/refseq_rna-refseq_protein.tsv is older than input/refseq_rna/download.lock -## Update config/refseq_rna-refseq_protein/config.yaml => output/tsv/refseq_rna-refseq_protein.tsv -< 2024-11-16T05:34:56 refseq_rna-refseq_protein -togoid-config config/refseq_rna-refseq_protein update -# Success: output/tsv/refseq_rna-refseq_protein.tsv is updated -> 2024-11-16T05:38:35 refseq_rna-refseq_protein +# File output/tsv/refseq_rna-refseq_protein.tsv is newer than input/refseq_rna/download.lock +# => Preserving output/tsv/refseq_rna-refseq_protein.tsv Rule for TSV (output/tsv/refseq_rna-refseq_protein.tsv) ------------------------------ Investigating output/tsv/refseq_rna-refseq_protein.tsv @@ -4399,18 +4426,14 @@ task needed: true timestamp: 2024-11-16 05:38:35 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-11-16 05:38:35 +0900) -latest-prerequisite time: 2024-11-16 05:38:35 +0900 +--prepare:refseq_rna (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ -### Update TSV for refseq_rna-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true +### Update TSV for refseq_rna-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/refseq_rna-taxonomy.tsv is newer than config/refseq_rna-taxonomy/config.yaml -# File output/tsv/refseq_rna-taxonomy.tsv is older than input/refseq_rna/download.lock -## Update config/refseq_rna-taxonomy/config.yaml => output/tsv/refseq_rna-taxonomy.tsv -< 2024-11-16T05:38:35 refseq_rna-taxonomy -togoid-config config/refseq_rna-taxonomy update -# Success: output/tsv/refseq_rna-taxonomy.tsv is updated -> 2024-11-16T05:41:38 refseq_rna-taxonomy +# File output/tsv/refseq_rna-taxonomy.tsv is newer than input/refseq_rna/download.lock +# => Preserving output/tsv/refseq_rna-taxonomy.tsv Rule for TSV (output/tsv/refseq_rna-taxonomy.tsv) ------------------------------ Investigating output/tsv/refseq_rna-taxonomy.tsv @@ -4419,8 +4442,8 @@ task needed: true timestamp: 2024-11-16 05:41:38 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-11-16 05:41:38 +0900) -latest-prerequisite time: 2024-11-16 05:41:38 +0900 +--prepare:refseq_rna (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ ### Update TSV for rhea-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4435,8 +4458,8 @@ task needed: true timestamp: 2024-10-07 01:54:59 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-11-16 05:41:38 +0900) -latest-prerequisite time: 2024-11-16 05:41:38 +0900 +--prepare:rhea (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ ### Update TSV for rhea-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4451,8 +4474,8 @@ task needed: true timestamp: 2024-10-07 01:55:00 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-11-16 05:41:38 +0900) -latest-prerequisite time: 2024-11-16 05:41:38 +0900 +--prepare:rhea (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ ### Update TSV for rhea-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4467,8 +4490,8 @@ task needed: true timestamp: 2024-10-07 01:55:00 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-11-16 05:41:38 +0900) -latest-prerequisite time: 2024-11-16 05:41:38 +0900 +--prepare:rhea (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ ### Update TSV for rhea-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4483,8 +4506,8 @@ task needed: true timestamp: 2024-10-07 01:55:02 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-11-16 05:41:38 +0900) -latest-prerequisite time: 2024-11-16 05:41:38 +0900 +--prepare:rhea (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ ### Update TSV for rhea-reactome_reaction if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4499,8 +4522,8 @@ task needed: true timestamp: 2024-10-07 01:55:03 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-11-16 05:41:38 +0900) -latest-prerequisite time: 2024-11-16 05:41:38 +0900 +--prepare:rhea (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ ### Update TSV for rhea-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4515,656 +4538,656 @@ task needed: true timestamp: 2024-10-07 01:55:41 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-11-16 05:41:38 +0900) -latest-prerequisite time: 2024-11-16 05:41:38 +0900 +--prepare:rhea (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ ### Update TSV for sra_accession-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-bioproject.tsv is newer than config/sra_accession-bioproject/config.yaml # File output/tsv/sra_accession-bioproject.tsv has no timestamp file -# File output/tsv/sra_accession-bioproject.tsv is created 7.312411721243448 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-bioproject.tsv is created 6.758292464129526 days ago (will be updated when >5 days) ## Update config/sra_accession-bioproject/config.yaml => output/tsv/sra_accession-bioproject.tsv -< 2024-11-16T05:41:38 sra_accession-bioproject +< 2024-11-22T23:56:25 sra_accession-bioproject togoid-config config/sra_accession-bioproject update # Success: output/tsv/sra_accession-bioproject.tsv is updated -> 2024-11-16T05:44:29 sra_accession-bioproject +> 2024-11-22T23:58:59 sra_accession-bioproject Rule for TSV (output/tsv/sra_accession-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_accession-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 05:44:29 +0900 +timestamp: 2024-11-22 23:58:59 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 05:44:29 +0900) -latest-prerequisite time: 2024-11-16 05:44:29 +0900 +--prepare:sra (2024-11-22 23:58:59 +0900) +latest-prerequisite time: 2024-11-22 23:58:59 +0900 ................................ ### Update TSV for sra_accession-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-biosample.tsv is newer than config/sra_accession-biosample/config.yaml # File output/tsv/sra_accession-biosample.tsv has no timestamp file -# File output/tsv/sra_accession-biosample.tsv is created 7.30856171329243 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-biosample.tsv is created 6.754229743601076 days ago (will be updated when >5 days) ## Update config/sra_accession-biosample/config.yaml => output/tsv/sra_accession-biosample.tsv -< 2024-11-16T05:44:29 sra_accession-biosample +< 2024-11-22T23:58:59 sra_accession-biosample togoid-config config/sra_accession-biosample update # Success: output/tsv/sra_accession-biosample.tsv is updated -> 2024-11-16T05:52:53 sra_accession-biosample +> 2024-11-23T00:07:17 sra_accession-biosample Rule for TSV (output/tsv/sra_accession-biosample.tsv) ------------------------------ Investigating output/tsv/sra_accession-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 05:52:53 +0900 +timestamp: 2024-11-23 00:07:17 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 05:52:53 +0900) -latest-prerequisite time: 2024-11-16 05:52:53 +0900 +--prepare:sra (2024-11-23 00:07:17 +0900) +latest-prerequisite time: 2024-11-23 00:07:17 +0900 ................................ ### Update TSV for sra_accession-sra_analysis if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_analysis.tsv is newer than config/sra_accession-sra_analysis/config.yaml # File output/tsv/sra_accession-sra_analysis.tsv has no timestamp file -# File output/tsv/sra_accession-sra_analysis.tsv is created 7.313597979078287 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_analysis.tsv is created 6.759176875650926 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_analysis/config.yaml => output/tsv/sra_accession-sra_analysis.tsv -< 2024-11-16T05:52:53 sra_accession-sra_analysis +< 2024-11-23T00:07:17 sra_accession-sra_analysis togoid-config config/sra_accession-sra_analysis update # Success: output/tsv/sra_accession-sra_analysis.tsv is updated -> 2024-11-16T05:54:04 sra_accession-sra_analysis +> 2024-11-23T00:08:26 sra_accession-sra_analysis Rule for TSV (output/tsv/sra_accession-sra_analysis.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_analysis.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 05:54:04 +0900 +timestamp: 2024-11-23 00:08:26 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 05:54:04 +0900) -latest-prerequisite time: 2024-11-16 05:54:04 +0900 +--prepare:sra (2024-11-23 00:08:26 +0900) +latest-prerequisite time: 2024-11-23 00:08:26 +0900 ................................ ### Update TSV for sra_accession-sra_experiment if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_experiment.tsv is newer than config/sra_accession-sra_experiment/config.yaml # File output/tsv/sra_accession-sra_experiment.tsv has no timestamp file -# File output/tsv/sra_accession-sra_experiment.tsv is created 7.30954470308081 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_experiment.tsv is created 6.755121968998241 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_experiment/config.yaml => output/tsv/sra_accession-sra_experiment.tsv -< 2024-11-16T05:54:04 sra_accession-sra_experiment +< 2024-11-23T00:08:26 sra_accession-sra_experiment togoid-config config/sra_accession-sra_experiment update # Success: output/tsv/sra_accession-sra_experiment.tsv is updated -> 2024-11-16T06:01:04 sra_accession-sra_experiment +> 2024-11-23T00:15:19 sra_accession-sra_experiment Rule for TSV (output/tsv/sra_accession-sra_experiment.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_experiment.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:01:04 +0900 +timestamp: 2024-11-23 00:15:19 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:01:04 +0900) -latest-prerequisite time: 2024-11-16 06:01:04 +0900 +--prepare:sra (2024-11-23 00:15:19 +0900) +latest-prerequisite time: 2024-11-23 00:15:19 +0900 ................................ ### Update TSV for sra_accession-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_project.tsv is newer than config/sra_accession-sra_project/config.yaml # File output/tsv/sra_accession-sra_project.tsv has no timestamp file -# File output/tsv/sra_accession-sra_project.tsv is created 7.313601204390809 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_project.tsv is created 6.7591098430072805 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_project/config.yaml => output/tsv/sra_accession-sra_project.tsv -< 2024-11-16T06:01:04 sra_accession-sra_project +< 2024-11-23T00:15:19 sra_accession-sra_project togoid-config config/sra_accession-sra_project update # Success: output/tsv/sra_accession-sra_project.tsv is updated -> 2024-11-16T06:02:12 sra_accession-sra_project +> 2024-11-23T00:16:28 sra_accession-sra_project Rule for TSV (output/tsv/sra_accession-sra_project.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:02:12 +0900 +timestamp: 2024-11-23 00:16:28 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:02:12 +0900) -latest-prerequisite time: 2024-11-16 06:02:12 +0900 +--prepare:sra (2024-11-23 00:16:28 +0900) +latest-prerequisite time: 2024-11-23 00:16:28 +0900 ................................ ### Update TSV for sra_accession-sra_run if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_run.tsv is newer than config/sra_accession-sra_run/config.yaml # File output/tsv/sra_accession-sra_run.tsv has no timestamp file -# File output/tsv/sra_accession-sra_run.tsv is created 7.308881031237234 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_run.tsv is created 6.754433068900394 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_run/config.yaml => output/tsv/sra_accession-sra_run.tsv -< 2024-11-16T06:02:12 sra_accession-sra_run +< 2024-11-23T00:16:28 sra_accession-sra_run togoid-config config/sra_accession-sra_run update # Success: output/tsv/sra_accession-sra_run.tsv is updated -> 2024-11-16T06:10:05 sra_accession-sra_run +> 2024-11-23T00:24:23 sra_accession-sra_run Rule for TSV (output/tsv/sra_accession-sra_run.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_run.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:10:05 +0900 +timestamp: 2024-11-23 00:24:23 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:10:05 +0900) -latest-prerequisite time: 2024-11-16 06:10:05 +0900 +--prepare:sra (2024-11-23 00:24:23 +0900) +latest-prerequisite time: 2024-11-23 00:24:23 +0900 ................................ ### Update TSV for sra_accession-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_sample.tsv is newer than config/sra_accession-sra_sample/config.yaml # File output/tsv/sra_accession-sra_sample.tsv has no timestamp file -# File output/tsv/sra_accession-sra_sample.tsv is created 7.3096777305375 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_sample.tsv is created 6.75523642176765 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_sample/config.yaml => output/tsv/sra_accession-sra_sample.tsv -< 2024-11-16T06:10:05 sra_accession-sra_sample +< 2024-11-23T00:24:23 sra_accession-sra_sample togoid-config config/sra_accession-sra_sample update # Success: output/tsv/sra_accession-sra_sample.tsv is updated -> 2024-11-16T06:16:50 sra_accession-sra_sample +> 2024-11-23T00:31:15 sra_accession-sra_sample Rule for TSV (output/tsv/sra_accession-sra_sample.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:16:50 +0900 +timestamp: 2024-11-23 00:31:15 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:16:50 +0900) -latest-prerequisite time: 2024-11-16 06:16:50 +0900 +--prepare:sra (2024-11-23 00:31:15 +0900) +latest-prerequisite time: 2024-11-23 00:31:15 +0900 ................................ ### Update TSV for sra_experiment-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-bioproject.tsv is newer than config/sra_experiment-bioproject/config.yaml # File output/tsv/sra_experiment-bioproject.tsv has no timestamp file -# File output/tsv/sra_experiment-bioproject.tsv is created 7.311809564529144 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-bioproject.tsv is created 6.757442858602338 days ago (will be updated when >5 days) ## Update config/sra_experiment-bioproject/config.yaml => output/tsv/sra_experiment-bioproject.tsv -< 2024-11-16T06:16:50 sra_experiment-bioproject +< 2024-11-23T00:31:15 sra_experiment-bioproject togoid-config config/sra_experiment-bioproject update # Success: output/tsv/sra_experiment-bioproject.tsv is updated -> 2024-11-16T06:20:32 sra_experiment-bioproject +> 2024-11-23T00:35:19 sra_experiment-bioproject Rule for TSV (output/tsv/sra_experiment-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_experiment-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:20:32 +0900 +timestamp: 2024-11-23 00:35:19 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:20:32 +0900) -latest-prerequisite time: 2024-11-16 06:20:32 +0900 +--prepare:sra (2024-11-23 00:35:19 +0900) +latest-prerequisite time: 2024-11-23 00:35:19 +0900 ................................ ### Update TSV for sra_experiment-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-biosample.tsv is newer than config/sra_experiment-biosample/config.yaml # File output/tsv/sra_experiment-biosample.tsv has no timestamp file -# File output/tsv/sra_experiment-biosample.tsv is created 7.31192749387331 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-biosample.tsv is created 6.757794681068102 days ago (will be updated when >5 days) ## Update config/sra_experiment-biosample/config.yaml => output/tsv/sra_experiment-biosample.tsv -< 2024-11-16T06:20:32 sra_experiment-biosample +< 2024-11-23T00:35:19 sra_experiment-biosample togoid-config config/sra_experiment-biosample update # Success: output/tsv/sra_experiment-biosample.tsv is updated -> 2024-11-16T06:24:06 sra_experiment-biosample +> 2024-11-23T00:38:59 sra_experiment-biosample Rule for TSV (output/tsv/sra_experiment-biosample.tsv) ------------------------------ Investigating output/tsv/sra_experiment-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:24:06 +0900 +timestamp: 2024-11-23 00:38:59 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:24:06 +0900) -latest-prerequisite time: 2024-11-16 06:24:06 +0900 +--prepare:sra (2024-11-23 00:38:59 +0900) +latest-prerequisite time: 2024-11-23 00:38:59 +0900 ................................ ### Update TSV for sra_experiment-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-sra_project.tsv is newer than config/sra_experiment-sra_project/config.yaml # File output/tsv/sra_experiment-sra_project.tsv has no timestamp file -# File output/tsv/sra_experiment-sra_project.tsv is created 7.312296044149838 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-sra_project.tsv is created 6.758240286099005 days ago (will be updated when >5 days) ## Update config/sra_experiment-sra_project/config.yaml => output/tsv/sra_experiment-sra_project.tsv -< 2024-11-16T06:24:06 sra_experiment-sra_project +< 2024-11-23T00:38:59 sra_experiment-sra_project togoid-config config/sra_experiment-sra_project update # Success: output/tsv/sra_experiment-sra_project.tsv is updated -> 2024-11-16T06:27:07 sra_experiment-sra_project +> 2024-11-23T00:42:04 sra_experiment-sra_project Rule for TSV (output/tsv/sra_experiment-sra_project.tsv) ------------------------------ Investigating output/tsv/sra_experiment-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:27:07 +0900 +timestamp: 2024-11-23 00:42:04 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:27:07 +0900) -latest-prerequisite time: 2024-11-16 06:27:07 +0900 +--prepare:sra (2024-11-23 00:42:04 +0900) +latest-prerequisite time: 2024-11-23 00:42:04 +0900 ................................ ### Update TSV for sra_experiment-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-sra_sample.tsv is newer than config/sra_experiment-sra_sample/config.yaml # File output/tsv/sra_experiment-sra_sample.tsv has no timestamp file -# File output/tsv/sra_experiment-sra_sample.tsv is created 7.312354135143831 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-sra_sample.tsv is created 6.758335076306389 days ago (will be updated when >5 days) ## Update config/sra_experiment-sra_sample/config.yaml => output/tsv/sra_experiment-sra_sample.tsv -< 2024-11-16T06:27:07 sra_experiment-sra_sample +< 2024-11-23T00:42:04 sra_experiment-sra_sample togoid-config config/sra_experiment-sra_sample update # Success: output/tsv/sra_experiment-sra_sample.tsv is updated -> 2024-11-16T06:30:04 sra_experiment-sra_sample +> 2024-11-23T00:45:31 sra_experiment-sra_sample Rule for TSV (output/tsv/sra_experiment-sra_sample.tsv) ------------------------------ Investigating output/tsv/sra_experiment-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:30:03 +0900 +timestamp: 2024-11-23 00:45:31 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:30:04 +0900) -latest-prerequisite time: 2024-11-16 06:30:04 +0900 +--prepare:sra (2024-11-23 00:45:31 +0900) +latest-prerequisite time: 2024-11-23 00:45:31 +0900 ................................ ### Update TSV for sra_project-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_project-bioproject.tsv is newer than config/sra_project-bioproject/config.yaml # File output/tsv/sra_project-bioproject.tsv has no timestamp file -# File output/tsv/sra_project-bioproject.tsv is created 7.313585467148205 days ago (will be updated when >5 days) +# File output/tsv/sra_project-bioproject.tsv is created 6.7599430231136335 days ago (will be updated when >5 days) ## Update config/sra_project-bioproject/config.yaml => output/tsv/sra_project-bioproject.tsv -< 2024-11-16T06:30:04 sra_project-bioproject +< 2024-11-23T00:45:31 sra_project-bioproject togoid-config config/sra_project-bioproject update # Success: output/tsv/sra_project-bioproject.tsv is updated -> 2024-11-16T06:31:12 sra_project-bioproject +> 2024-11-23T00:46:43 sra_project-bioproject Rule for TSV (output/tsv/sra_project-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_project-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:31:12 +0900 +timestamp: 2024-11-23 00:46:43 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:31:12 +0900) -latest-prerequisite time: 2024-11-16 06:31:12 +0900 +--prepare:sra (2024-11-23 00:46:43 +0900) +latest-prerequisite time: 2024-11-23 00:46:43 +0900 ................................ ### Update TSV for sra_run-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-bioproject.tsv is newer than config/sra_run-bioproject/config.yaml # File output/tsv/sra_run-bioproject.tsv has no timestamp file -# File output/tsv/sra_run-bioproject.tsv is created 7.3114028502612145 days ago (will be updated when >5 days) +# File output/tsv/sra_run-bioproject.tsv is created 6.757947609258438 days ago (will be updated when >5 days) ## Update config/sra_run-bioproject/config.yaml => output/tsv/sra_run-bioproject.tsv -< 2024-11-16T06:31:12 sra_run-bioproject +< 2024-11-23T00:46:43 sra_run-bioproject togoid-config config/sra_run-bioproject update # Success: output/tsv/sra_run-bioproject.tsv is updated -> 2024-11-16T06:35:16 sra_run-bioproject +> 2024-11-23T00:50:59 sra_run-bioproject Rule for TSV (output/tsv/sra_run-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_run-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:35:16 +0900 +timestamp: 2024-11-23 00:50:59 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:35:16 +0900) -latest-prerequisite time: 2024-11-16 06:35:16 +0900 +--prepare:sra (2024-11-23 00:50:59 +0900) +latest-prerequisite time: 2024-11-23 00:50:59 +0900 ................................ ### Update TSV for sra_run-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-biosample.tsv is newer than config/sra_run-biosample/config.yaml # File output/tsv/sra_run-biosample.tsv has no timestamp file -# File output/tsv/sra_run-biosample.tsv is created 7.311473027536806 days ago (will be updated when >5 days) +# File output/tsv/sra_run-biosample.tsv is created 6.75815612857103 days ago (will be updated when >5 days) ## Update config/sra_run-biosample/config.yaml => output/tsv/sra_run-biosample.tsv -< 2024-11-16T06:35:16 sra_run-biosample +< 2024-11-23T00:50:59 sra_run-biosample togoid-config config/sra_run-biosample update # Success: output/tsv/sra_run-biosample.tsv is updated -> 2024-11-16T06:39:14 sra_run-biosample +> 2024-11-23T00:55:14 sra_run-biosample Rule for TSV (output/tsv/sra_run-biosample.tsv) ------------------------------ Investigating output/tsv/sra_run-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:39:14 +0900 +timestamp: 2024-11-23 00:55:14 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:39:14 +0900) -latest-prerequisite time: 2024-11-16 06:39:14 +0900 +--prepare:sra (2024-11-23 00:55:14 +0900) +latest-prerequisite time: 2024-11-23 00:55:14 +0900 ................................ ### Update TSV for sra_run-sra_experiment if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_experiment.tsv is newer than config/sra_run-sra_experiment/config.yaml # File output/tsv/sra_run-sra_experiment.tsv has no timestamp file -# File output/tsv/sra_run-sra_experiment.tsv is created 7.312014052957141 days ago (will be updated when >5 days) +# File output/tsv/sra_run-sra_experiment.tsv is created 6.758945626900069 days ago (will be updated when >5 days) ## Update config/sra_run-sra_experiment/config.yaml => output/tsv/sra_run-sra_experiment.tsv -< 2024-11-16T06:39:14 sra_run-sra_experiment +< 2024-11-23T00:55:14 sra_run-sra_experiment togoid-config config/sra_run-sra_experiment update # Success: output/tsv/sra_run-sra_experiment.tsv is updated -> 2024-11-16T06:42:21 sra_run-sra_experiment +> 2024-11-23T00:58:31 sra_run-sra_experiment Rule for TSV (output/tsv/sra_run-sra_experiment.tsv) ------------------------------ Investigating output/tsv/sra_run-sra_experiment.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:42:21 +0900 +timestamp: 2024-11-23 00:58:31 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:42:21 +0900) -latest-prerequisite time: 2024-11-16 06:42:21 +0900 +--prepare:sra (2024-11-23 00:58:31 +0900) +latest-prerequisite time: 2024-11-23 00:58:31 +0900 ................................ ### Update TSV for sra_run-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_project.tsv is newer than config/sra_run-sra_project/config.yaml # File output/tsv/sra_run-sra_project.tsv has no timestamp file -# File output/tsv/sra_run-sra_project.tsv is created 7.311868803526979 days ago (will be updated when >5 days) +# File output/tsv/sra_run-sra_project.tsv is created 6.75894658737272 days ago (will be updated when >5 days) ## Update config/sra_run-sra_project/config.yaml => output/tsv/sra_run-sra_project.tsv -< 2024-11-16T06:42:21 sra_run-sra_project +< 2024-11-23T00:58:31 sra_run-sra_project togoid-config config/sra_run-sra_project update # Success: output/tsv/sra_run-sra_project.tsv is updated -> 2024-11-16T06:45:38 sra_run-sra_project +> 2024-11-23T01:02:14 sra_run-sra_project Rule for TSV (output/tsv/sra_run-sra_project.tsv) ------------------------------ Investigating output/tsv/sra_run-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:45:38 +0900 +timestamp: 2024-11-23 01:02:11 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:45:38 +0900) -latest-prerequisite time: 2024-11-16 06:45:38 +0900 +--prepare:sra (2024-11-23 01:02:14 +0900) +latest-prerequisite time: 2024-11-23 01:02:14 +0900 ................................ ### Update TSV for sra_run-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_sample.tsv is newer than config/sra_run-sra_sample/config.yaml # File output/tsv/sra_run-sra_sample.tsv has no timestamp file -# File output/tsv/sra_run-sra_sample.tsv is created 7.311870548795775 days ago (will be updated when >5 days) +# File output/tsv/sra_run-sra_sample.tsv is created 6.759288383960603 days ago (will be updated when >5 days) ## Update config/sra_run-sra_sample/config.yaml => output/tsv/sra_run-sra_sample.tsv -< 2024-11-16T06:45:38 sra_run-sra_sample +< 2024-11-23T01:02:14 sra_run-sra_sample togoid-config config/sra_run-sra_sample update # Success: output/tsv/sra_run-sra_sample.tsv is updated -> 2024-11-16T06:48:51 sra_run-sra_sample +> 2024-11-23T01:05:37 sra_run-sra_sample Rule for TSV (output/tsv/sra_run-sra_sample.tsv) ------------------------------ Investigating output/tsv/sra_run-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:48:51 +0900 +timestamp: 2024-11-23 01:05:36 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:48:51 +0900) -latest-prerequisite time: 2024-11-16 06:48:51 +0900 +--prepare:sra (2024-11-23 01:05:37 +0900) +latest-prerequisite time: 2024-11-23 01:05:37 +0900 ................................ ### Update TSV for sra_sample-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_sample-biosample.tsv is newer than config/sra_sample-biosample/config.yaml # File output/tsv/sra_sample-biosample.tsv has no timestamp file -# File output/tsv/sra_sample-biosample.tsv is created 7.311906027184155 days ago (will be updated when >5 days) +# File output/tsv/sra_sample-biosample.tsv is created 6.759400822964143 days ago (will be updated when >5 days) ## Update config/sra_sample-biosample/config.yaml => output/tsv/sra_sample-biosample.tsv -< 2024-11-16T06:48:51 sra_sample-biosample +< 2024-11-23T01:05:37 sra_sample-biosample togoid-config config/sra_sample-biosample update # Success: output/tsv/sra_sample-biosample.tsv is updated -> 2024-11-16T06:52:04 sra_sample-biosample +> 2024-11-23T01:09:08 sra_sample-biosample Rule for TSV (output/tsv/sra_sample-biosample.tsv) ------------------------------ Investigating output/tsv/sra_sample-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:52:04 +0900 +timestamp: 2024-11-23 01:09:08 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-16 06:52:04 +0900) -latest-prerequisite time: 2024-11-16 06:52:04 +0900 +--prepare:sra (2024-11-23 01:09:08 +0900) +latest-prerequisite time: 2024-11-23 01:09:08 +0900 ................................ ### Update TSV for swisslipids-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-chebi.tsv is newer than config/swisslipids-chebi/config.yaml # File output/tsv/swisslipids-chebi.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-chebi/config.yaml => output/tsv/swisslipids-chebi.tsv -< 2024-11-16T06:52:04 swisslipids-chebi +< 2024-11-23T01:09:08 swisslipids-chebi togoid-config config/swisslipids-chebi update # Success: output/tsv/swisslipids-chebi.tsv is updated -> 2024-11-16T06:52:19 swisslipids-chebi +> 2024-11-23T01:10:44 swisslipids-chebi Rule for TSV (output/tsv/swisslipids-chebi.tsv) ------------------------------ Investigating output/tsv/swisslipids-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:52:19 +0900 +timestamp: 2024-11-23 01:10:44 +0900 pre-requisites: --output/tsv/ () ---prepare:swisslipids (2024-11-16 06:52:19 +0900) -latest-prerequisite time: 2024-11-16 06:52:19 +0900 +--prepare:swisslipids (2024-11-23 01:10:44 +0900) +latest-prerequisite time: 2024-11-23 01:10:44 +0900 ................................ ### Update TSV for swisslipids-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-hmdb.tsv is newer than config/swisslipids-hmdb/config.yaml # File output/tsv/swisslipids-hmdb.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-hmdb/config.yaml => output/tsv/swisslipids-hmdb.tsv -< 2024-11-16T06:52:19 swisslipids-hmdb +< 2024-11-23T01:10:44 swisslipids-hmdb togoid-config config/swisslipids-hmdb update # Success: output/tsv/swisslipids-hmdb.tsv is updated -> 2024-11-16T06:52:33 swisslipids-hmdb +> 2024-11-23T01:10:57 swisslipids-hmdb Rule for TSV (output/tsv/swisslipids-hmdb.tsv) ------------------------------ Investigating output/tsv/swisslipids-hmdb.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:52:33 +0900 +timestamp: 2024-11-23 01:10:57 +0900 pre-requisites: --output/tsv/ () ---prepare:swisslipids (2024-11-16 06:52:33 +0900) -latest-prerequisite time: 2024-11-16 06:52:33 +0900 +--prepare:swisslipids (2024-11-23 01:10:57 +0900) +latest-prerequisite time: 2024-11-23 01:10:57 +0900 ................................ ### Update TSV for swisslipids-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-inchi_key.tsv is newer than config/swisslipids-inchi_key/config.yaml # File output/tsv/swisslipids-inchi_key.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-inchi_key/config.yaml => output/tsv/swisslipids-inchi_key.tsv -< 2024-11-16T06:52:33 swisslipids-inchi_key +< 2024-11-23T01:10:57 swisslipids-inchi_key togoid-config config/swisslipids-inchi_key update # Success: output/tsv/swisslipids-inchi_key.tsv is updated -> 2024-11-16T06:52:45 swisslipids-inchi_key +> 2024-11-23T01:11:09 swisslipids-inchi_key Rule for TSV (output/tsv/swisslipids-inchi_key.tsv) ------------------------------ Investigating output/tsv/swisslipids-inchi_key.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:52:45 +0900 +timestamp: 2024-11-23 01:11:09 +0900 pre-requisites: --output/tsv/ () ---prepare:swisslipids (2024-11-16 06:52:45 +0900) -latest-prerequisite time: 2024-11-16 06:52:45 +0900 +--prepare:swisslipids (2024-11-23 01:11:09 +0900) +latest-prerequisite time: 2024-11-23 01:11:09 +0900 ................................ ### Update TSV for taxonomy-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/taxonomy-pubmed.tsv is newer than config/taxonomy-pubmed/config.yaml # File output/tsv/taxonomy-pubmed.tsv is older than input/taxonomy/download.lock ## Update config/taxonomy-pubmed/config.yaml => output/tsv/taxonomy-pubmed.tsv -< 2024-11-16T06:52:45 taxonomy-pubmed +< 2024-11-23T01:11:10 taxonomy-pubmed togoid-config config/taxonomy-pubmed update awk: cmd. line:1: warning: escape sequence `\|' treated as plain `|' # Success: output/tsv/taxonomy-pubmed.tsv is updated -> 2024-11-16T06:52:46 taxonomy-pubmed +> 2024-11-23T01:11:10 taxonomy-pubmed Rule for TSV (output/tsv/taxonomy-pubmed.tsv) ------------------------------ Investigating output/tsv/taxonomy-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:52:46 +0900 +timestamp: 2024-11-23 01:11:10 +0900 pre-requisites: --output/tsv/ () ---prepare:taxonomy (2024-11-16 06:52:46 +0900) -latest-prerequisite time: 2024-11-16 06:52:46 +0900 +--prepare:taxonomy (2024-11-23 01:11:10 +0900) +latest-prerequisite time: 2024-11-23 01:11:10 +0900 ................................ ### Update TSV for togovar-clinvar if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-clinvar.tsv is newer than config/togovar-clinvar/config.yaml # File output/tsv/togovar-clinvar.tsv has no timestamp file -# File output/tsv/togovar-clinvar.tsv is created 7.313487867547894 days ago (will be updated when >5 days) +# File output/tsv/togovar-clinvar.tsv is created 6.762252385018149 days ago (will be updated when >5 days) ## Update config/togovar-clinvar/config.yaml => output/tsv/togovar-clinvar.tsv -< 2024-11-16T06:52:46 togovar-clinvar +< 2024-11-23T01:11:10 togovar-clinvar togoid-config config/togovar-clinvar update # Success: output/tsv/togovar-clinvar.tsv is updated -> 2024-11-16T06:53:32 togovar-clinvar +> 2024-11-23T01:12:04 togovar-clinvar Rule for TSV (output/tsv/togovar-clinvar.tsv) ------------------------------ Investigating output/tsv/togovar-clinvar.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 06:53:32 +0900 +timestamp: 2024-11-23 01:12:04 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for togovar-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-dbsnp.tsv is newer than config/togovar-dbsnp/config.yaml # File output/tsv/togovar-dbsnp.tsv has no timestamp file -# File output/tsv/togovar-dbsnp.tsv is created 7.313574401987187 days ago (will be updated when >5 days) +# File output/tsv/togovar-dbsnp.tsv is created 6.762455336945058 days ago (will be updated when >5 days) ## Update config/togovar-dbsnp/config.yaml => output/tsv/togovar-dbsnp.tsv -< 2024-11-16T06:53:32 togovar-dbsnp +< 2024-11-23T01:12:04 togovar-dbsnp togoid-config config/togovar-dbsnp update # Success: output/tsv/togovar-dbsnp.tsv is updated -> 2024-11-16T06:54:08 togovar-dbsnp +> 2024-11-23T01:12:41 togovar-dbsnp Rule for TSV (output/tsv/togovar-dbsnp.tsv) ------------------------------ Investigating output/tsv/togovar-dbsnp.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 06:54:08 +0900 +timestamp: 2024-11-23 01:12:41 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for togovar-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ensembl_gene.tsv is newer than config/togovar-ensembl_gene/config.yaml # File output/tsv/togovar-ensembl_gene.tsv has no timestamp file -# File output/tsv/togovar-ensembl_gene.tsv is created 7.313453879407095 days ago (will be updated when >5 days) +# File output/tsv/togovar-ensembl_gene.tsv is created 6.762441388145035 days ago (will be updated when >5 days) ## Update config/togovar-ensembl_gene/config.yaml => output/tsv/togovar-ensembl_gene.tsv -< 2024-11-16T06:54:08 togovar-ensembl_gene +< 2024-11-23T01:12:41 togovar-ensembl_gene togoid-config config/togovar-ensembl_gene update # Success: output/tsv/togovar-ensembl_gene.tsv is updated -> 2024-11-16T06:54:46 togovar-ensembl_gene +> 2024-11-23T01:13:21 togovar-ensembl_gene Rule for TSV (output/tsv/togovar-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/togovar-ensembl_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 06:54:46 +0900 +timestamp: 2024-11-23 01:13:21 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for togovar-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ensembl_transcript.tsv is newer than config/togovar-ensembl_transcript/config.yaml # File output/tsv/togovar-ensembl_transcript.tsv has no timestamp file -# File output/tsv/togovar-ensembl_transcript.tsv is created 7.3114764634002425 days ago (will be updated when >5 days) +# File output/tsv/togovar-ensembl_transcript.tsv is created 6.7611798191747345 days ago (will be updated when >5 days) ## Update config/togovar-ensembl_transcript/config.yaml => output/tsv/togovar-ensembl_transcript.tsv -< 2024-11-16T06:54:46 togovar-ensembl_transcript +< 2024-11-23T01:13:21 togovar-ensembl_transcript togoid-config config/togovar-ensembl_transcript update # Success: output/tsv/togovar-ensembl_transcript.tsv is updated -> 2024-11-16T06:57:16 togovar-ensembl_transcript +> 2024-11-23T01:16:01 togovar-ensembl_transcript Rule for TSV (output/tsv/togovar-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/togovar-ensembl_transcript.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 06:57:16 +0900 +timestamp: 2024-11-23 01:16:01 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for togovar-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-hgnc.tsv is newer than config/togovar-hgnc/config.yaml # File output/tsv/togovar-hgnc.tsv has no timestamp file -# File output/tsv/togovar-hgnc.tsv is created 7.312914102639167 days ago (will be updated when >5 days) +# File output/tsv/togovar-hgnc.tsv is created 6.762759874190729 days ago (will be updated when >5 days) ## Update config/togovar-hgnc/config.yaml => output/tsv/togovar-hgnc.tsv -< 2024-11-16T06:57:16 togovar-hgnc +< 2024-11-23T01:16:01 togovar-hgnc togoid-config config/togovar-hgnc update # Success: output/tsv/togovar-hgnc.tsv is updated -> 2024-11-16T06:57:39 togovar-hgnc +> 2024-11-23T01:16:25 togovar-hgnc Rule for TSV (output/tsv/togovar-hgnc.tsv) ------------------------------ Investigating output/tsv/togovar-hgnc.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 06:57:39 +0900 +timestamp: 2024-11-23 01:16:25 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for togovar-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ncbigene.tsv is newer than config/togovar-ncbigene/config.yaml # File output/tsv/togovar-ncbigene.tsv has no timestamp file -# File output/tsv/togovar-ncbigene.tsv is created 7.312912754812303 days ago (will be updated when >5 days) +# File output/tsv/togovar-ncbigene.tsv is created 6.762769467598287 days ago (will be updated when >5 days) ## Update config/togovar-ncbigene/config.yaml => output/tsv/togovar-ncbigene.tsv -< 2024-11-16T06:57:39 togovar-ncbigene +< 2024-11-23T01:16:25 togovar-ncbigene togoid-config config/togovar-ncbigene update # Success: output/tsv/togovar-ncbigene.tsv is updated -> 2024-11-16T06:58:02 togovar-ncbigene +> 2024-11-23T01:16:51 togovar-ncbigene Rule for TSV (output/tsv/togovar-ncbigene.tsv) ------------------------------ Investigating output/tsv/togovar-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 06:58:02 +0900 +timestamp: 2024-11-23 01:16:51 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for togovar-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-pubmed.tsv is newer than config/togovar-pubmed/config.yaml # File output/tsv/togovar-pubmed.tsv has no timestamp file -# File output/tsv/togovar-pubmed.tsv is created 7.313161438982964 days ago (will be updated when >5 days) +# File output/tsv/togovar-pubmed.tsv is created 6.763056750092337 days ago (will be updated when >5 days) ## Update config/togovar-pubmed/config.yaml => output/tsv/togovar-pubmed.tsv -< 2024-11-16T06:58:02 togovar-pubmed +< 2024-11-23T01:16:51 togovar-pubmed togoid-config config/togovar-pubmed update # Success: output/tsv/togovar-pubmed.tsv is updated -> 2024-11-16T06:58:03 togovar-pubmed +> 2024-11-23T01:16:52 togovar-pubmed Rule for TSV (output/tsv/togovar-pubmed.tsv) ------------------------------ Investigating output/tsv/togovar-pubmed.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 06:58:03 +0900 +timestamp: 2024-11-23 01:16:52 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for togovar-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-refseq_rna.tsv is newer than config/togovar-refseq_rna/config.yaml # File output/tsv/togovar-refseq_rna.tsv has no timestamp file -# File output/tsv/togovar-refseq_rna.tsv is created 7.31208652791978 days ago (will be updated when >5 days) +# File output/tsv/togovar-refseq_rna.tsv is created 6.762093706442928 days ago (will be updated when >5 days) ## Update config/togovar-refseq_rna/config.yaml => output/tsv/togovar-refseq_rna.tsv -< 2024-11-16T06:58:03 togovar-refseq_rna +< 2024-11-23T01:16:52 togovar-refseq_rna togoid-config config/togovar-refseq_rna update # Success: output/tsv/togovar-refseq_rna.tsv is updated -> 2024-11-16T06:59:27 togovar-refseq_rna +> 2024-11-23T01:18:16 togovar-refseq_rna Rule for TSV (output/tsv/togovar-refseq_rna.tsv) ------------------------------ Investigating output/tsv/togovar-refseq_rna.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 06:59:27 +0900 +timestamp: 2024-11-23 01:18:16 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for uberon-ncit_tissue if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uberon-ncit_tissue.tsv is newer than config/uberon-ncit_tissue/config.yaml # File output/tsv/uberon-ncit_tissue.tsv has no timestamp file -# File output/tsv/uberon-ncit_tissue.tsv is created 7.313038091469502 days ago (will be updated when >5 days) +# File output/tsv/uberon-ncit_tissue.tsv is created 6.763040415831285 days ago (will be updated when >5 days) ## Update config/uberon-ncit_tissue/config.yaml => output/tsv/uberon-ncit_tissue.tsv -< 2024-11-16T06:59:27 uberon-ncit_tissue +< 2024-11-23T01:18:16 uberon-ncit_tissue togoid-config config/uberon-ncit_tissue update # Success: output/tsv/uberon-ncit_tissue.tsv is updated -> 2024-11-16T06:59:29 uberon-ncit_tissue +> 2024-11-23T01:18:18 uberon-ncit_tissue Rule for TSV (output/tsv/uberon-ncit_tissue.tsv) ------------------------------ Investigating output/tsv/uberon-ncit_tissue.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 06:59:29 +0900 +timestamp: 2024-11-23 01:18:18 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for uniprot-chembl_target if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5179,8 +5202,8 @@ task needed: true timestamp: 2024-10-07 03:49:45 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5195,8 +5218,8 @@ task needed: true timestamp: 2024-10-07 03:50:14 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5211,8 +5234,8 @@ task needed: true timestamp: 2024-10-07 04:41:06 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5227,8 +5250,8 @@ task needed: true timestamp: 2024-10-07 05:28:14 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5243,8 +5266,8 @@ task needed: true timestamp: 2024-10-07 06:14:28 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5259,8 +5282,8 @@ task needed: true timestamp: 2024-10-07 07:01:01 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5275,8 +5298,8 @@ task needed: true timestamp: 2024-10-07 07:19:03 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5291,8 +5314,8 @@ task needed: true timestamp: 2024-10-07 07:57:17 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5307,8 +5330,8 @@ task needed: true timestamp: 2024-10-07 08:43:29 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-intact if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5323,8 +5346,8 @@ task needed: true timestamp: 2024-10-07 08:45:13 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5339,8 +5362,8 @@ task needed: true timestamp: 2024-10-07 09:23:48 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-oma_group if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5355,8 +5378,8 @@ task needed: true timestamp: 2024-10-07 10:02:59 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5371,8 +5394,8 @@ task needed: true timestamp: 2024-10-07 10:03:07 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5387,8 +5410,8 @@ task needed: true timestamp: 2024-10-07 10:03:10 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5403,8 +5426,8 @@ task needed: true timestamp: 2024-10-07 10:49:35 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:19 +0900) +latest-prerequisite time: 2024-11-23 01:18:19 +0900 ................................ ### Update TSV for uniprot-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5419,8 +5442,8 @@ task needed: true timestamp: 2024-10-07 11:28:15 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:20 +0900) +latest-prerequisite time: 2024-11-23 01:18:20 +0900 ................................ ### Update TSV for uniprot-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5435,8 +5458,8 @@ task needed: true timestamp: 2024-10-07 12:14:19 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:20 +0900) +latest-prerequisite time: 2024-11-23 01:18:20 +0900 ................................ ### Update TSV for uniprot-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5451,8 +5474,8 @@ task needed: true timestamp: 2024-10-07 12:53:40 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:20 +0900) +latest-prerequisite time: 2024-11-23 01:18:20 +0900 ................................ ### Update TSV for uniprot-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5467,8 +5490,8 @@ task needed: true timestamp: 2024-10-07 13:26:44 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:20 +0900) +latest-prerequisite time: 2024-11-23 01:18:20 +0900 ................................ ### Update TSV for uniprot-uniprot_mnemonic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5483,188 +5506,188 @@ task needed: true timestamp: 2024-10-07 14:21:31 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:29 +0900) -latest-prerequisite time: 2024-11-16 06:59:29 +0900 +--prepare:uniprot (2024-11-23 01:18:20 +0900) +latest-prerequisite time: 2024-11-23 01:18:20 +0900 ................................ ### Update TSV for uniprot_reference_proteome-assembly_insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is newer than config/uniprot_reference_proteome-assembly_insdc/config.yaml # File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is created 7.313049319597604 days ago (will be updated when >5 days) +# File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is created 6.763074740167338 days ago (will be updated when >5 days) ## Update config/uniprot_reference_proteome-assembly_insdc/config.yaml => output/tsv/uniprot_reference_proteome-assembly_insdc.tsv -< 2024-11-16T06:59:29 uniprot_reference_proteome-assembly_insdc +< 2024-11-23T01:18:20 uniprot_reference_proteome-assembly_insdc togoid-config config/uniprot_reference_proteome-assembly_insdc update # Success: output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is updated -> 2024-11-16T06:59:30 uniprot_reference_proteome-assembly_insdc +> 2024-11-23T01:18:25 uniprot_reference_proteome-assembly_insdc Rule for TSV (output/tsv/uniprot_reference_proteome-assembly_insdc.tsv) ------------------------------ Investigating output/tsv/uniprot_reference_proteome-assembly_insdc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:59:30 +0900 +timestamp: 2024-11-23 01:18:25 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:30 +0900) -latest-prerequisite time: 2024-11-16 06:59:30 +0900 +--prepare:uniprot (2024-11-23 01:18:25 +0900) +latest-prerequisite time: 2024-11-23 01:18:25 +0900 ................................ ### Update TSV for uniprot_reference_proteome-assembly_refseq if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is newer than config/uniprot_reference_proteome-assembly_refseq/config.yaml # File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is created 7.313052545204386 days ago (will be updated when >5 days) +# File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is created 6.7631414695522105 days ago (will be updated when >5 days) ## Update config/uniprot_reference_proteome-assembly_refseq/config.yaml => output/tsv/uniprot_reference_proteome-assembly_refseq.tsv -< 2024-11-16T06:59:30 uniprot_reference_proteome-assembly_refseq +< 2024-11-23T01:18:26 uniprot_reference_proteome-assembly_refseq togoid-config config/uniprot_reference_proteome-assembly_refseq update # Success: output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is updated -> 2024-11-16T06:59:30 uniprot_reference_proteome-assembly_refseq +> 2024-11-23T01:18:26 uniprot_reference_proteome-assembly_refseq Rule for TSV (output/tsv/uniprot_reference_proteome-assembly_refseq.tsv) ------------------------------ Investigating output/tsv/uniprot_reference_proteome-assembly_refseq.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:59:30 +0900 +timestamp: 2024-11-23 01:18:26 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:30 +0900) -latest-prerequisite time: 2024-11-16 06:59:30 +0900 +--prepare:uniprot (2024-11-23 01:18:26 +0900) +latest-prerequisite time: 2024-11-23 01:18:26 +0900 ................................ ### Update TSV for uniprot_reference_proteome-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-taxonomy.tsv is newer than config/uniprot_reference_proteome-taxonomy/config.yaml # File output/tsv/uniprot_reference_proteome-taxonomy.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-taxonomy.tsv is created 7.313051912492952 days ago (will be updated when >5 days) +# File output/tsv/uniprot_reference_proteome-taxonomy.tsv is created 6.7631402672078815 days ago (will be updated when >5 days) ## Update config/uniprot_reference_proteome-taxonomy/config.yaml => output/tsv/uniprot_reference_proteome-taxonomy.tsv -< 2024-11-16T06:59:30 uniprot_reference_proteome-taxonomy +< 2024-11-23T01:18:26 uniprot_reference_proteome-taxonomy togoid-config config/uniprot_reference_proteome-taxonomy update # Success: output/tsv/uniprot_reference_proteome-taxonomy.tsv is updated -> 2024-11-16T06:59:31 uniprot_reference_proteome-taxonomy +> 2024-11-23T01:18:27 uniprot_reference_proteome-taxonomy Rule for TSV (output/tsv/uniprot_reference_proteome-taxonomy.tsv) ------------------------------ Investigating output/tsv/uniprot_reference_proteome-taxonomy.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-16 06:59:31 +0900 +timestamp: 2024-11-23 01:18:27 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-16 06:59:31 +0900) -latest-prerequisite time: 2024-11-16 06:59:31 +0900 +--prepare:uniprot (2024-11-23 01:18:27 +0900) +latest-prerequisite time: 2024-11-23 01:18:27 +0900 ................................ ### Update TSV for wikipathways-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-chebi.tsv is newer than config/wikipathways-chebi/config.yaml # File output/tsv/wikipathways-chebi.tsv has no timestamp file -# File output/tsv/wikipathways-chebi.tsv is created 252.3018518281418 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-chebi.tsv is created 6.7630997818285294 days ago (will be updated when >5 days) ## Update config/wikipathways-chebi/config.yaml => output/tsv/wikipathways-chebi.tsv -< 2024-11-16T06:59:31 wikipathways-chebi +< 2024-11-23T01:18:27 wikipathways-chebi togoid-config config/wikipathways-chebi update # Success: output/tsv/wikipathways-chebi.tsv is updated -> 2024-11-16T06:59:35 wikipathways-chebi +> 2024-11-23T01:18:34 wikipathways-chebi Rule for TSV (output/tsv/wikipathways-chebi.tsv) ------------------------------ Investigating output/tsv/wikipathways-chebi.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 06:59:35 +0900 +timestamp: 2024-11-23 01:18:34 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for wikipathways-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-doid.tsv is newer than config/wikipathways-doid/config.yaml # File output/tsv/wikipathways-doid.tsv has no timestamp file -# File output/tsv/wikipathways-doid.tsv is created 7.313038079577223 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-doid.tsv is created 6.763163566861412 days ago (will be updated when >5 days) ## Update config/wikipathways-doid/config.yaml => output/tsv/wikipathways-doid.tsv -< 2024-11-16T06:59:35 wikipathways-doid +< 2024-11-23T01:18:34 wikipathways-doid togoid-config config/wikipathways-doid update # Success: output/tsv/wikipathways-doid.tsv is updated -> 2024-11-16T06:59:37 wikipathways-doid +> 2024-11-23T01:18:37 wikipathways-doid Rule for TSV (output/tsv/wikipathways-doid.tsv) ------------------------------ Investigating output/tsv/wikipathways-doid.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 06:59:37 +0900 +timestamp: 2024-11-23 01:18:37 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for wikipathways-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-hmdb.tsv is newer than config/wikipathways-hmdb/config.yaml # File output/tsv/wikipathways-hmdb.tsv has no timestamp file -# File output/tsv/wikipathways-hmdb.tsv is created 7.313034747775463 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-hmdb.tsv is created 6.763166065291157 days ago (will be updated when >5 days) ## Update config/wikipathways-hmdb/config.yaml => output/tsv/wikipathways-hmdb.tsv -< 2024-11-16T06:59:37 wikipathways-hmdb +< 2024-11-23T01:18:37 wikipathways-hmdb togoid-config config/wikipathways-hmdb update # Success: output/tsv/wikipathways-hmdb.tsv is updated -> 2024-11-16T06:59:39 wikipathways-hmdb +> 2024-11-23T01:18:39 wikipathways-hmdb Rule for TSV (output/tsv/wikipathways-hmdb.tsv) ------------------------------ Investigating output/tsv/wikipathways-hmdb.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 06:59:39 +0900 +timestamp: 2024-11-23 01:18:39 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for wikipathways-lipidmaps if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-lipidmaps.tsv is newer than config/wikipathways-lipidmaps/config.yaml # File output/tsv/wikipathways-lipidmaps.tsv has no timestamp file -# File output/tsv/wikipathways-lipidmaps.tsv is created 7.313039332835221 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-lipidmaps.tsv is created 6.763171537373959 days ago (will be updated when >5 days) ## Update config/wikipathways-lipidmaps/config.yaml => output/tsv/wikipathways-lipidmaps.tsv -< 2024-11-16T06:59:39 wikipathways-lipidmaps +< 2024-11-23T01:18:39 wikipathways-lipidmaps togoid-config config/wikipathways-lipidmaps update # Success: output/tsv/wikipathways-lipidmaps.tsv is updated -> 2024-11-16T06:59:41 wikipathways-lipidmaps +> 2024-11-23T01:18:41 wikipathways-lipidmaps Rule for TSV (output/tsv/wikipathways-lipidmaps.tsv) ------------------------------ Investigating output/tsv/wikipathways-lipidmaps.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 06:59:41 +0900 +timestamp: 2024-11-23 01:18:41 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for wikipathways-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-ncbigene.tsv is newer than config/wikipathways-ncbigene/config.yaml # File output/tsv/wikipathways-ncbigene.tsv has no timestamp file -# File output/tsv/wikipathways-ncbigene.tsv is created 7.31290917685448 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-ncbigene.tsv is created 6.763039489635196 days ago (will be updated when >5 days) ## Update config/wikipathways-ncbigene/config.yaml => output/tsv/wikipathways-ncbigene.tsv -< 2024-11-16T06:59:41 wikipathways-ncbigene +< 2024-11-23T01:18:41 wikipathways-ncbigene togoid-config config/wikipathways-ncbigene update # Success: output/tsv/wikipathways-ncbigene.tsv is updated -> 2024-11-16T06:59:55 wikipathways-ncbigene +> 2024-11-23T01:18:58 wikipathways-ncbigene Rule for TSV (output/tsv/wikipathways-ncbigene.tsv) ------------------------------ Investigating output/tsv/wikipathways-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-16 06:59:55 +0900 +timestamp: 2024-11-23 01:18:58 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TSV for wikipathways-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-uniprot.tsv is newer than config/wikipathways-uniprot/config.yaml # File output/tsv/wikipathways-uniprot.tsv has no timestamp file -# File output/tsv/wikipathways-uniprot.tsv is created 252.30170191144947 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-uniprot.tsv is created 259.06493106209524 days ago (will be updated when >5 days) ## Update config/wikipathways-uniprot/config.yaml => output/tsv/wikipathways-uniprot.tsv -< 2024-11-16T06:59:55 wikipathways-uniprot +< 2024-11-23T01:18:58 wikipathways-uniprot togoid-config config/wikipathways-uniprot update # Error: output/tsv/wikipathways-uniprot.tsv new file size per old 60240 / 470542 = 0.12802257821830995 < 0.5 # Failure: output/tsv/wikipathways-uniprot.tsv is not updated -> 2024-11-16T06:59:59 wikipathways-uniprot +> 2024-11-23T01:19:03 wikipathways-uniprot Rule for TSV (output/tsv/wikipathways-uniprot.tsv) ------------------------------ Investigating output/tsv/wikipathways-uniprot.tsv @@ -5673,70 +5696,70 @@ task needed: true timestamp: 2024-03-08 23:45:28 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-16 03:12:06 +0900) -latest-prerequisite time: 2024-11-16 03:12:06 +0900 +--input/update.txt (2024-11-22 21:53:47 +0900) +latest-prerequisite time: 2024-11-22 21:53:47 +0900 ................................ ### Update TTL for affy_probeset-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/affy_probeset-ncbigene.ttl is older than output/tsv/affy_probeset-ncbigene.tsv ## Convert output/tsv/affy_probeset-ncbigene.tsv => output/ttl/affy_probeset-ncbigene.ttl -< 2024-11-16T06:59:59 affy_probeset-ncbigene +< 2024-11-23T01:19:04 affy_probeset-ncbigene togoid-config config/affy_probeset-ncbigene convert -> 2024-11-16T06:59:59 affy_probeset-ncbigene +> 2024-11-23T01:19:05 affy_probeset-ncbigene ### Update TTL for assembly_insdc-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-bioproject.ttl is older than output/tsv/assembly_insdc-bioproject.tsv ## Convert output/tsv/assembly_insdc-bioproject.tsv => output/ttl/assembly_insdc-bioproject.ttl -< 2024-11-16T06:59:59 assembly_insdc-bioproject +< 2024-11-23T01:19:05 assembly_insdc-bioproject togoid-config config/assembly_insdc-bioproject convert -> 2024-11-16T07:00:19 assembly_insdc-bioproject +> 2024-11-23T01:19:51 assembly_insdc-bioproject ### Update TTL for assembly_insdc-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-biosample.ttl is older than output/tsv/assembly_insdc-biosample.tsv ## Convert output/tsv/assembly_insdc-biosample.tsv => output/ttl/assembly_insdc-biosample.ttl -< 2024-11-16T07:00:20 assembly_insdc-biosample +< 2024-11-23T01:19:51 assembly_insdc-biosample togoid-config config/assembly_insdc-biosample convert -> 2024-11-16T07:00:39 assembly_insdc-biosample +> 2024-11-23T01:20:13 assembly_insdc-biosample ### Update TTL for assembly_insdc-insdc_master if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-insdc_master.ttl is older than output/tsv/assembly_insdc-insdc_master.tsv ## Convert output/tsv/assembly_insdc-insdc_master.tsv => output/ttl/assembly_insdc-insdc_master.ttl -< 2024-11-16T07:00:39 assembly_insdc-insdc_master +< 2024-11-23T01:20:13 assembly_insdc-insdc_master togoid-config config/assembly_insdc-insdc_master convert -> 2024-11-16T07:00:59 assembly_insdc-insdc_master +> 2024-11-23T01:21:01 assembly_insdc-insdc_master ### Update TTL for bioproject-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-biosample.ttl is older than output/tsv/bioproject-biosample.tsv ## Convert output/tsv/bioproject-biosample.tsv => output/ttl/bioproject-biosample.ttl -< 2024-11-16T07:00:59 bioproject-biosample +< 2024-11-23T01:21:01 bioproject-biosample togoid-config config/bioproject-biosample convert -> 2024-11-16T07:01:20 bioproject-biosample +> 2024-11-23T01:21:40 bioproject-biosample ### Update TTL for bioproject-geo_series if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-geo_series.ttl is older than output/tsv/bioproject-geo_series.tsv ## Convert output/tsv/bioproject-geo_series.tsv => output/ttl/bioproject-geo_series.ttl -< 2024-11-16T07:01:20 bioproject-geo_series +< 2024-11-23T01:21:40 bioproject-geo_series togoid-config config/bioproject-geo_series convert -> 2024-11-16T07:01:22 bioproject-geo_series +> 2024-11-23T01:21:45 bioproject-geo_series ### Update TTL for bioproject-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-pubmed.ttl is older than output/tsv/bioproject-pubmed.tsv ## Convert output/tsv/bioproject-pubmed.tsv => output/ttl/bioproject-pubmed.ttl -< 2024-11-16T07:01:22 bioproject-pubmed +< 2024-11-23T01:21:45 bioproject-pubmed togoid-config config/bioproject-pubmed convert -> 2024-11-16T07:01:25 bioproject-pubmed +> 2024-11-23T01:21:56 bioproject-pubmed ### Update TTL for bioproject_umbrella-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject_umbrella-bioproject.ttl is older than output/tsv/bioproject_umbrella-bioproject.tsv ## Convert output/tsv/bioproject_umbrella-bioproject.tsv => output/ttl/bioproject_umbrella-bioproject.ttl -< 2024-11-16T07:01:25 bioproject_umbrella-bioproject +< 2024-11-23T01:21:56 bioproject_umbrella-bioproject togoid-config config/bioproject_umbrella-bioproject convert -> 2024-11-16T07:01:26 bioproject_umbrella-bioproject +> 2024-11-23T01:22:00 bioproject_umbrella-bioproject ### Update TTL for biosample-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/biosample-bioproject.ttl is older than output/tsv/biosample-bioproject.tsv ## Convert output/tsv/biosample-bioproject.tsv => output/ttl/biosample-bioproject.ttl -< 2024-11-16T07:01:26 biosample-bioproject +< 2024-11-23T01:22:00 biosample-bioproject togoid-config config/biosample-bioproject convert -> 2024-11-16T07:04:29 biosample-bioproject +> 2024-11-23T01:26:06 biosample-bioproject ### Update TTL for biosample-geo_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/biosample-geo_sample.ttl is older than output/tsv/biosample-geo_sample.tsv ## Convert output/tsv/biosample-geo_sample.tsv => output/ttl/biosample-geo_sample.ttl -< 2024-11-16T07:04:29 biosample-geo_sample +< 2024-11-23T01:26:06 biosample-geo_sample togoid-config config/biosample-geo_sample convert -> 2024-11-16T07:05:52 biosample-geo_sample +> 2024-11-23T01:27:22 biosample-geo_sample ### Update TTL for cellosaurus-ncit_disease if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/cellosaurus-ncit_disease.ttl is newer than output/tsv/cellosaurus-ncit_disease.tsv # => Preserving output/ttl/cellosaurus-ncit_disease.ttl @@ -5746,162 +5769,162 @@ togoid-config config/biosample-geo_sample convert ### Update TTL for chebi-glytoucan if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chebi-glytoucan.ttl is older than output/tsv/chebi-glytoucan.tsv ## Convert output/tsv/chebi-glytoucan.tsv => output/ttl/chebi-glytoucan.ttl -< 2024-11-16T07:05:52 chebi-glytoucan +< 2024-11-23T01:27:22 chebi-glytoucan togoid-config config/chebi-glytoucan convert -> 2024-11-16T07:05:53 chebi-glytoucan +> 2024-11-23T01:27:22 chebi-glytoucan ### Update TTL for chebi-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chebi-inchi_key.ttl is older than output/tsv/chebi-inchi_key.tsv ## Convert output/tsv/chebi-inchi_key.tsv => output/ttl/chebi-inchi_key.ttl -< 2024-11-16T07:05:53 chebi-inchi_key +< 2024-11-23T01:27:22 chebi-inchi_key togoid-config config/chebi-inchi_key convert -> 2024-11-16T07:05:54 chebi-inchi_key +> 2024-11-23T01:27:25 chebi-inchi_key ### Update TTL for chembl_compound-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-chebi.ttl is older than output/tsv/chembl_compound-chebi.tsv ## Convert output/tsv/chembl_compound-chebi.tsv => output/ttl/chembl_compound-chebi.ttl -< 2024-11-16T07:05:54 chembl_compound-chebi +< 2024-11-23T01:27:25 chembl_compound-chebi togoid-config config/chembl_compound-chebi convert -> 2024-11-16T07:05:55 chembl_compound-chebi +> 2024-11-23T01:27:26 chembl_compound-chebi ### Update TTL for chembl_compound-chembl_target if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-chembl_target.ttl is older than output/tsv/chembl_compound-chembl_target.tsv ## Convert output/tsv/chembl_compound-chembl_target.tsv => output/ttl/chembl_compound-chembl_target.ttl -< 2024-11-16T07:05:55 chembl_compound-chembl_target +< 2024-11-23T01:27:26 chembl_compound-chembl_target togoid-config config/chembl_compound-chembl_target convert -> 2024-11-16T07:06:26 chembl_compound-chembl_target +> 2024-11-23T01:28:02 chembl_compound-chembl_target ### Update TTL for chembl_compound-drugbank if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-drugbank.ttl is older than output/tsv/chembl_compound-drugbank.tsv ## Convert output/tsv/chembl_compound-drugbank.tsv => output/ttl/chembl_compound-drugbank.ttl -< 2024-11-16T07:06:26 chembl_compound-drugbank +< 2024-11-23T01:28:02 chembl_compound-drugbank togoid-config config/chembl_compound-drugbank convert -> 2024-11-16T07:06:26 chembl_compound-drugbank +> 2024-11-23T01:28:02 chembl_compound-drugbank ### Update TTL for chembl_compound-hmdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-hmdb.ttl is older than output/tsv/chembl_compound-hmdb.tsv ## Convert output/tsv/chembl_compound-hmdb.tsv => output/ttl/chembl_compound-hmdb.ttl -< 2024-11-16T07:06:26 chembl_compound-hmdb +< 2024-11-23T01:28:02 chembl_compound-hmdb togoid-config config/chembl_compound-hmdb convert -> 2024-11-16T07:06:27 chembl_compound-hmdb +> 2024-11-23T01:28:03 chembl_compound-hmdb ### Update TTL for chembl_compound-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-inchi_key.ttl is older than output/tsv/chembl_compound-inchi_key.tsv ## Convert output/tsv/chembl_compound-inchi_key.tsv => output/ttl/chembl_compound-inchi_key.ttl -< 2024-11-16T07:06:27 chembl_compound-inchi_key +< 2024-11-23T01:28:03 chembl_compound-inchi_key togoid-config config/chembl_compound-inchi_key convert -> 2024-11-16T07:06:47 chembl_compound-inchi_key +> 2024-11-23T01:28:22 chembl_compound-inchi_key ### Update TTL for chembl_compound-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-mesh.ttl is older than output/tsv/chembl_compound-mesh.tsv ## Convert output/tsv/chembl_compound-mesh.tsv => output/ttl/chembl_compound-mesh.ttl -< 2024-11-16T07:06:47 chembl_compound-mesh +< 2024-11-23T01:28:22 chembl_compound-mesh togoid-config config/chembl_compound-mesh convert -> 2024-11-16T07:06:47 chembl_compound-mesh +> 2024-11-23T01:28:23 chembl_compound-mesh ### Update TTL for chembl_compound-pdb_ccd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pdb_ccd.ttl is older than output/tsv/chembl_compound-pdb_ccd.tsv ## Convert output/tsv/chembl_compound-pdb_ccd.tsv => output/ttl/chembl_compound-pdb_ccd.ttl -< 2024-11-16T07:06:47 chembl_compound-pdb_ccd +< 2024-11-23T01:28:23 chembl_compound-pdb_ccd togoid-config config/chembl_compound-pdb_ccd convert -> 2024-11-16T07:06:47 chembl_compound-pdb_ccd +> 2024-11-23T01:28:24 chembl_compound-pdb_ccd ### Update TTL for chembl_compound-pubchem_compound if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubchem_compound.ttl is older than output/tsv/chembl_compound-pubchem_compound.tsv ## Convert output/tsv/chembl_compound-pubchem_compound.tsv => output/ttl/chembl_compound-pubchem_compound.ttl -< 2024-11-16T07:06:47 chembl_compound-pubchem_compound +< 2024-11-23T01:28:24 chembl_compound-pubchem_compound togoid-config config/chembl_compound-pubchem_compound convert -> 2024-11-16T07:07:04 chembl_compound-pubchem_compound +> 2024-11-23T01:28:48 chembl_compound-pubchem_compound ### Update TTL for chembl_compound-pubchem_substance if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubchem_substance.ttl is older than output/tsv/chembl_compound-pubchem_substance.tsv ## Convert output/tsv/chembl_compound-pubchem_substance.tsv => output/ttl/chembl_compound-pubchem_substance.ttl -< 2024-11-16T07:07:04 chembl_compound-pubchem_substance +< 2024-11-23T01:28:48 chembl_compound-pubchem_substance togoid-config config/chembl_compound-pubchem_substance convert -> 2024-11-16T07:07:08 chembl_compound-pubchem_substance +> 2024-11-23T01:28:54 chembl_compound-pubchem_substance ### Update TTL for chembl_compound-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubmed.ttl is older than output/tsv/chembl_compound-pubmed.tsv ## Convert output/tsv/chembl_compound-pubmed.tsv => output/ttl/chembl_compound-pubmed.ttl -< 2024-11-16T07:07:08 chembl_compound-pubmed +< 2024-11-23T01:28:54 chembl_compound-pubmed togoid-config config/chembl_compound-pubmed convert -> 2024-11-16T07:07:20 chembl_compound-pubmed +> 2024-11-23T01:29:15 chembl_compound-pubmed ### Update TTL for chembl_target-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/chembl_target-ensembl_gene.ttl is newer than output/tsv/chembl_target-ensembl_gene.tsv # => Preserving output/ttl/chembl_target-ensembl_gene.ttl ### Update TTL for chembl_target-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-go.ttl is older than output/tsv/chembl_target-go.tsv ## Convert output/tsv/chembl_target-go.tsv => output/ttl/chembl_target-go.ttl -< 2024-11-16T07:07:20 chembl_target-go +< 2024-11-23T01:29:15 chembl_target-go togoid-config config/chembl_target-go convert -> 2024-11-16T07:07:21 chembl_target-go +> 2024-11-23T01:29:16 chembl_target-go ### Update TTL for chembl_target-interpro if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-interpro.ttl is older than output/tsv/chembl_target-interpro.tsv ## Convert output/tsv/chembl_target-interpro.tsv => output/ttl/chembl_target-interpro.ttl -< 2024-11-16T07:07:21 chembl_target-interpro +< 2024-11-23T01:29:16 chembl_target-interpro togoid-config config/chembl_target-interpro convert -> 2024-11-16T07:07:21 chembl_target-interpro +> 2024-11-23T01:29:17 chembl_target-interpro ### Update TTL for chembl_target-pdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-pdb.ttl is older than output/tsv/chembl_target-pdb.tsv ## Convert output/tsv/chembl_target-pdb.tsv => output/ttl/chembl_target-pdb.ttl -< 2024-11-16T07:07:21 chembl_target-pdb +< 2024-11-23T01:29:17 chembl_target-pdb togoid-config config/chembl_target-pdb convert -> 2024-11-16T07:07:21 chembl_target-pdb +> 2024-11-23T01:29:18 chembl_target-pdb ### Update TTL for chembl_target-pfam if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-pfam.ttl is older than output/tsv/chembl_target-pfam.tsv ## Convert output/tsv/chembl_target-pfam.tsv => output/ttl/chembl_target-pfam.ttl -< 2024-11-16T07:07:21 chembl_target-pfam +< 2024-11-23T01:29:18 chembl_target-pfam togoid-config config/chembl_target-pfam convert -> 2024-11-16T07:07:22 chembl_target-pfam +> 2024-11-23T01:29:18 chembl_target-pfam ### Update TTL for chembl_target-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-reactome_pathway.ttl is older than output/tsv/chembl_target-reactome_pathway.tsv ## Convert output/tsv/chembl_target-reactome_pathway.tsv => output/ttl/chembl_target-reactome_pathway.ttl -< 2024-11-16T07:07:22 chembl_target-reactome_pathway +< 2024-11-23T01:29:18 chembl_target-reactome_pathway togoid-config config/chembl_target-reactome_pathway convert -> 2024-11-16T07:07:22 chembl_target-reactome_pathway +> 2024-11-23T01:29:19 chembl_target-reactome_pathway ### Update TTL for chembl_target-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-uniprot.ttl is older than output/tsv/chembl_target-uniprot.tsv ## Convert output/tsv/chembl_target-uniprot.tsv => output/ttl/chembl_target-uniprot.ttl -< 2024-11-16T07:07:22 chembl_target-uniprot +< 2024-11-23T01:29:19 chembl_target-uniprot togoid-config config/chembl_target-uniprot convert -> 2024-11-16T07:07:22 chembl_target-uniprot +> 2024-11-23T01:29:20 chembl_target-uniprot ### Update TTL for clinvar-dbsnp if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-dbsnp.ttl is older than output/tsv/clinvar-dbsnp.tsv ## Convert output/tsv/clinvar-dbsnp.tsv => output/ttl/clinvar-dbsnp.ttl -< 2024-11-16T07:07:22 clinvar-dbsnp +< 2024-11-23T01:29:20 clinvar-dbsnp togoid-config config/clinvar-dbsnp convert -> 2024-11-16T07:07:45 clinvar-dbsnp +> 2024-11-23T01:29:57 clinvar-dbsnp ### Update TTL for clinvar-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-hgnc.ttl is older than output/tsv/clinvar-hgnc.tsv ## Convert output/tsv/clinvar-hgnc.tsv => output/ttl/clinvar-hgnc.ttl -< 2024-11-16T07:07:45 clinvar-hgnc +< 2024-11-23T01:29:57 clinvar-hgnc togoid-config config/clinvar-hgnc convert -> 2024-11-16T07:08:09 clinvar-hgnc +> 2024-11-23T01:30:30 clinvar-hgnc ### Update TTL for clinvar-medgen if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-medgen.ttl is older than output/tsv/clinvar-medgen.tsv ## Convert output/tsv/clinvar-medgen.tsv => output/ttl/clinvar-medgen.ttl -< 2024-11-16T07:08:09 clinvar-medgen +< 2024-11-23T01:30:30 clinvar-medgen togoid-config config/clinvar-medgen convert -> 2024-11-16T07:08:41 clinvar-medgen +> 2024-11-23T01:31:15 clinvar-medgen ### Update TTL for clinvar-mondo if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-mondo.ttl is older than output/tsv/clinvar-mondo.tsv ## Convert output/tsv/clinvar-mondo.tsv => output/ttl/clinvar-mondo.ttl -< 2024-11-16T07:08:41 clinvar-mondo +< 2024-11-23T01:31:15 clinvar-mondo togoid-config config/clinvar-mondo convert -> 2024-11-16T07:08:56 clinvar-mondo +> 2024-11-23T01:31:38 clinvar-mondo ### Update TTL for clinvar-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-ncbigene.ttl is older than output/tsv/clinvar-ncbigene.tsv ## Convert output/tsv/clinvar-ncbigene.tsv => output/ttl/clinvar-ncbigene.ttl -< 2024-11-16T07:08:56 clinvar-ncbigene +< 2024-11-23T01:31:38 clinvar-ncbigene togoid-config config/clinvar-ncbigene convert -> 2024-11-16T07:09:18 clinvar-ncbigene +> 2024-11-23T01:32:08 clinvar-ncbigene ### Update TTL for clinvar-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-omim_phenotype.ttl is older than output/tsv/clinvar-omim_phenotype.tsv ## Convert output/tsv/clinvar-omim_phenotype.tsv => output/ttl/clinvar-omim_phenotype.ttl -< 2024-11-16T07:09:18 clinvar-omim_phenotype +< 2024-11-23T01:32:08 clinvar-omim_phenotype togoid-config config/clinvar-omim_phenotype convert -> 2024-11-16T07:09:31 clinvar-omim_phenotype +> 2024-11-23T01:32:26 clinvar-omim_phenotype ### Update TTL for clinvar-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-orphanet_phenotype.ttl is older than output/tsv/clinvar-orphanet_phenotype.tsv ## Convert output/tsv/clinvar-orphanet_phenotype.tsv => output/ttl/clinvar-orphanet_phenotype.ttl -< 2024-11-16T07:09:31 clinvar-orphanet_phenotype +< 2024-11-23T01:32:26 clinvar-orphanet_phenotype togoid-config config/clinvar-orphanet_phenotype convert -> 2024-11-16T07:09:45 clinvar-orphanet_phenotype +> 2024-11-23T01:32:45 clinvar-orphanet_phenotype ### Update TTL for clinvar-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-uniprot.ttl is older than output/tsv/clinvar-uniprot.tsv ## Convert output/tsv/clinvar-uniprot.tsv => output/ttl/clinvar-uniprot.ttl -< 2024-11-16T07:09:45 clinvar-uniprot +< 2024-11-23T01:32:45 clinvar-uniprot togoid-config config/clinvar-uniprot convert -> 2024-11-16T07:09:46 clinvar-uniprot +> 2024-11-23T01:32:46 clinvar-uniprot ### Update TTL for cog-insdc if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/cog-insdc.ttl is newer than output/tsv/cog-insdc.tsv # => Preserving output/ttl/cog-insdc.ttl @@ -5911,99 +5934,99 @@ togoid-config config/clinvar-uniprot convert ### Update TTL for doid-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-mesh.ttl is older than output/tsv/doid-mesh.tsv ## Convert output/tsv/doid-mesh.tsv => output/ttl/doid-mesh.ttl -< 2024-11-16T07:09:46 doid-mesh +< 2024-11-23T01:32:46 doid-mesh togoid-config config/doid-mesh convert -> 2024-11-16T07:09:46 doid-mesh +> 2024-11-23T01:32:46 doid-mesh ### Update TTL for doid-ncit_disease if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-ncit_disease.ttl is older than output/tsv/doid-ncit_disease.tsv ## Convert output/tsv/doid-ncit_disease.tsv => output/ttl/doid-ncit_disease.ttl -< 2024-11-16T07:09:46 doid-ncit_disease +< 2024-11-23T01:32:46 doid-ncit_disease togoid-config config/doid-ncit_disease convert -> 2024-11-16T07:09:46 doid-ncit_disease +> 2024-11-23T01:32:47 doid-ncit_disease ### Update TTL for doid-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-omim_phenotype.ttl is older than output/tsv/doid-omim_phenotype.tsv ## Convert output/tsv/doid-omim_phenotype.tsv => output/ttl/doid-omim_phenotype.ttl -< 2024-11-16T07:09:46 doid-omim_phenotype +< 2024-11-23T01:32:47 doid-omim_phenotype togoid-config config/doid-omim_phenotype convert -> 2024-11-16T07:09:46 doid-omim_phenotype +> 2024-11-23T01:32:47 doid-omim_phenotype ### Update TTL for ensembl_gene-affy_probeset if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-affy_probeset.ttl is older than output/tsv/ensembl_gene-affy_probeset.tsv ## Convert output/tsv/ensembl_gene-affy_probeset.tsv => output/ttl/ensembl_gene-affy_probeset.ttl -< 2024-11-16T07:09:46 ensembl_gene-affy_probeset +< 2024-11-23T01:32:47 ensembl_gene-affy_probeset togoid-config config/ensembl_gene-affy_probeset convert -> 2024-11-16T07:09:47 ensembl_gene-affy_probeset +> 2024-11-23T01:32:49 ensembl_gene-affy_probeset ### Update TTL for ensembl_gene-ensembl_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ensembl_protein.ttl is older than output/tsv/ensembl_gene-ensembl_protein.tsv ## Convert output/tsv/ensembl_gene-ensembl_protein.tsv => output/ttl/ensembl_gene-ensembl_protein.ttl -< 2024-11-16T07:09:47 ensembl_gene-ensembl_protein +< 2024-11-23T01:32:49 ensembl_gene-ensembl_protein togoid-config config/ensembl_gene-ensembl_protein convert -> 2024-11-16T07:12:08 ensembl_gene-ensembl_protein +> 2024-11-23T01:37:38 ensembl_gene-ensembl_protein ### Update TTL for ensembl_gene-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ensembl_transcript.ttl is older than output/tsv/ensembl_gene-ensembl_transcript.tsv ## Convert output/tsv/ensembl_gene-ensembl_transcript.tsv => output/ttl/ensembl_gene-ensembl_transcript.ttl -< 2024-11-16T07:12:08 ensembl_gene-ensembl_transcript +< 2024-11-23T01:37:38 ensembl_gene-ensembl_transcript togoid-config config/ensembl_gene-ensembl_transcript convert -> 2024-11-16T07:14:59 ensembl_gene-ensembl_transcript +> 2024-11-23T01:42:44 ensembl_gene-ensembl_transcript ### Update TTL for ensembl_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-hgnc.ttl is older than output/tsv/ensembl_gene-hgnc.tsv ## Convert output/tsv/ensembl_gene-hgnc.tsv => output/ttl/ensembl_gene-hgnc.ttl -< 2024-11-16T07:14:59 ensembl_gene-hgnc +< 2024-11-23T01:42:44 ensembl_gene-hgnc togoid-config config/ensembl_gene-hgnc convert -> 2024-11-16T07:15:00 ensembl_gene-hgnc +> 2024-11-23T01:42:45 ensembl_gene-hgnc ### Update TTL for ensembl_gene-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ncbigene.ttl is older than output/tsv/ensembl_gene-ncbigene.tsv ## Convert output/tsv/ensembl_gene-ncbigene.tsv => output/ttl/ensembl_gene-ncbigene.ttl -< 2024-11-16T07:15:00 ensembl_gene-ncbigene +< 2024-11-23T01:42:45 ensembl_gene-ncbigene togoid-config config/ensembl_gene-ncbigene convert -> 2024-11-16T07:17:23 ensembl_gene-ncbigene +> 2024-11-23T01:45:16 ensembl_gene-ncbigene ### Update TTL for ensembl_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-uniprot.ttl is older than output/tsv/ensembl_gene-uniprot.tsv ## Convert output/tsv/ensembl_gene-uniprot.tsv => output/ttl/ensembl_gene-uniprot.ttl -< 2024-11-16T07:17:23 ensembl_gene-uniprot +< 2024-11-23T01:45:16 ensembl_gene-uniprot togoid-config config/ensembl_gene-uniprot convert -> 2024-11-16T07:18:12 ensembl_gene-uniprot +> 2024-11-23T01:46:09 ensembl_gene-uniprot ### Update TTL for ensembl_protein-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_protein-ensembl_transcript.ttl is older than output/tsv/ensembl_protein-ensembl_transcript.tsv ## Convert output/tsv/ensembl_protein-ensembl_transcript.tsv => output/ttl/ensembl_protein-ensembl_transcript.ttl -< 2024-11-16T07:18:12 ensembl_protein-ensembl_transcript +< 2024-11-23T01:46:13 ensembl_protein-ensembl_transcript togoid-config config/ensembl_protein-ensembl_transcript convert -> 2024-11-16T07:20:30 ensembl_protein-ensembl_transcript +> 2024-11-23T01:49:55 ensembl_protein-ensembl_transcript ### Update TTL for ensembl_transcript-affy_probeset if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-affy_probeset.ttl is older than output/tsv/ensembl_transcript-affy_probeset.tsv ## Convert output/tsv/ensembl_transcript-affy_probeset.tsv => output/ttl/ensembl_transcript-affy_probeset.ttl -< 2024-11-16T07:20:30 ensembl_transcript-affy_probeset +< 2024-11-23T01:49:55 ensembl_transcript-affy_probeset togoid-config config/ensembl_transcript-affy_probeset convert -> 2024-11-16T07:20:33 ensembl_transcript-affy_probeset +> 2024-11-23T01:49:58 ensembl_transcript-affy_probeset ### Update TTL for ensembl_transcript-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-go.ttl is older than output/tsv/ensembl_transcript-go.tsv ## Convert output/tsv/ensembl_transcript-go.tsv => output/ttl/ensembl_transcript-go.ttl -< 2024-11-16T07:20:33 ensembl_transcript-go +< 2024-11-23T01:49:58 ensembl_transcript-go togoid-config config/ensembl_transcript-go convert -> 2024-11-16T07:33:23 ensembl_transcript-go +> 2024-11-23T02:03:36 ensembl_transcript-go ### Update TTL for ensembl_transcript-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-hgnc.ttl is older than output/tsv/ensembl_transcript-hgnc.tsv ## Convert output/tsv/ensembl_transcript-hgnc.tsv => output/ttl/ensembl_transcript-hgnc.ttl -< 2024-11-16T07:33:23 ensembl_transcript-hgnc +< 2024-11-23T02:03:36 ensembl_transcript-hgnc togoid-config config/ensembl_transcript-hgnc convert -> 2024-11-16T07:33:25 ensembl_transcript-hgnc +> 2024-11-23T02:03:39 ensembl_transcript-hgnc ### Update TTL for ensembl_transcript-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-refseq_rna.ttl is older than output/tsv/ensembl_transcript-refseq_rna.tsv ## Convert output/tsv/ensembl_transcript-refseq_rna.tsv => output/ttl/ensembl_transcript-refseq_rna.ttl -< 2024-11-16T07:33:25 ensembl_transcript-refseq_rna +< 2024-11-23T02:03:39 ensembl_transcript-refseq_rna togoid-config config/ensembl_transcript-refseq_rna convert -> 2024-11-16T07:41:35 ensembl_transcript-refseq_rna +> 2024-11-23T02:14:24 ensembl_transcript-refseq_rna ### Update TTL for gea-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/gea-bioproject.ttl is older than output/tsv/gea-bioproject.tsv ## Convert output/tsv/gea-bioproject.tsv => output/ttl/gea-bioproject.ttl -< 2024-11-16T07:41:35 gea-bioproject +< 2024-11-23T02:14:24 gea-bioproject togoid-config config/gea-bioproject convert -> 2024-11-16T07:41:35 gea-bioproject +> 2024-11-23T02:14:25 gea-bioproject ### Update TTL for gea-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/gea-biosample.ttl is older than output/tsv/gea-biosample.tsv ## Convert output/tsv/gea-biosample.tsv => output/ttl/gea-biosample.ttl -< 2024-11-16T07:41:35 gea-biosample +< 2024-11-23T02:14:25 gea-biosample togoid-config config/gea-biosample convert -> 2024-11-16T07:41:35 gea-biosample +> 2024-11-23T02:14:25 gea-biosample ### Update TTL for glycomotif-glytoucan if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/glycomotif-glytoucan.ttl is newer than output/tsv/glycomotif-glytoucan.tsv # => Preserving output/ttl/glycomotif-glytoucan.ttl @@ -6013,60 +6036,102 @@ togoid-config config/gea-biosample convert ### Update TTL for glytoucan-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/glytoucan-ncbigene.ttl is older than output/tsv/glytoucan-ncbigene.tsv ## Convert output/tsv/glytoucan-ncbigene.tsv => output/ttl/glytoucan-ncbigene.ttl -< 2024-11-16T07:41:35 glytoucan-ncbigene +< 2024-11-23T02:14:26 glytoucan-ncbigene togoid-config config/glytoucan-ncbigene convert -> 2024-11-16T07:41:36 glytoucan-ncbigene +> 2024-11-23T02:14:26 glytoucan-ncbigene ### Update TTL for glytoucan-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/glytoucan-uniprot.ttl is older than output/tsv/glytoucan-uniprot.tsv ## Convert output/tsv/glytoucan-uniprot.tsv => output/ttl/glytoucan-uniprot.ttl -< 2024-11-16T07:41:36 glytoucan-uniprot +< 2024-11-23T02:14:26 glytoucan-uniprot togoid-config config/glytoucan-uniprot convert -> 2024-11-16T07:41:37 glytoucan-uniprot +> 2024-11-23T02:14:27 glytoucan-uniprot ### Update TTL for hgnc-ccds if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/hgnc-ccds.ttl is newer than output/tsv/hgnc-ccds.tsv # => Preserving output/ttl/hgnc-ccds.ttl -### Update TTL for hgnc-ec if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-ec.ttl is newer than output/tsv/hgnc-ec.tsv -# => Preserving output/ttl/hgnc-ec.ttl -### Update TTL for hgnc-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-ensembl_gene.ttl is newer than output/tsv/hgnc-ensembl_gene.tsv -# => Preserving output/ttl/hgnc-ensembl_gene.ttl -### Update TTL for hgnc-hgnc_symbol if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-hgnc_symbol.ttl is newer than output/tsv/hgnc-hgnc_symbol.tsv -# => Preserving output/ttl/hgnc-hgnc_symbol.ttl -### Update TTL for hgnc-insdc if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-insdc.ttl is newer than output/tsv/hgnc-insdc.tsv -# => Preserving output/ttl/hgnc-insdc.ttl -### Update TTL for hgnc-lrg if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-lrg.ttl is newer than output/tsv/hgnc-lrg.tsv -# => Preserving output/ttl/hgnc-lrg.ttl -### Update TTL for hgnc-mgi_gene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-mgi_gene.ttl is newer than output/tsv/hgnc-mgi_gene.tsv -# => Preserving output/ttl/hgnc-mgi_gene.ttl -### Update TTL for hgnc-mirbase if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-mirbase.ttl is newer than output/tsv/hgnc-mirbase.tsv -# => Preserving output/ttl/hgnc-mirbase.ttl -### Update TTL for hgnc-ncbigene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-ncbigene.ttl is newer than output/tsv/hgnc-ncbigene.tsv -# => Preserving output/ttl/hgnc-ncbigene.ttl -### Update TTL for hgnc-omim_gene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-omim_gene.ttl is newer than output/tsv/hgnc-omim_gene.tsv -# => Preserving output/ttl/hgnc-omim_gene.ttl -### Update TTL for hgnc-pubmed if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-pubmed.ttl is newer than output/tsv/hgnc-pubmed.tsv -# => Preserving output/ttl/hgnc-pubmed.ttl -### Update TTL for hgnc-refseq_genomic if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-refseq_genomic.ttl is newer than output/tsv/hgnc-refseq_genomic.tsv -# => Preserving output/ttl/hgnc-refseq_genomic.ttl -### Update TTL for hgnc-refseq_rna if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-refseq_rna.ttl is newer than output/tsv/hgnc-refseq_rna.tsv -# => Preserving output/ttl/hgnc-refseq_rna.ttl -### Update TTL for hgnc-rgd if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-rgd.ttl is newer than output/tsv/hgnc-rgd.tsv -# => Preserving output/ttl/hgnc-rgd.ttl -### Update TTL for hgnc-uniprot if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-uniprot.ttl is newer than output/tsv/hgnc-uniprot.tsv -# => Preserving output/ttl/hgnc-uniprot.ttl +### Update TTL for hgnc-ec if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-ec.ttl is older than output/tsv/hgnc-ec.tsv +## Convert output/tsv/hgnc-ec.tsv => output/ttl/hgnc-ec.ttl +< 2024-11-23T02:14:27 hgnc-ec +togoid-config config/hgnc-ec convert +> 2024-11-23T02:14:28 hgnc-ec +### Update TTL for hgnc-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-ensembl_gene.ttl is older than output/tsv/hgnc-ensembl_gene.tsv +## Convert output/tsv/hgnc-ensembl_gene.tsv => output/ttl/hgnc-ensembl_gene.ttl +< 2024-11-23T02:14:28 hgnc-ensembl_gene +togoid-config config/hgnc-ensembl_gene convert +> 2024-11-23T02:14:29 hgnc-ensembl_gene +### Update TTL for hgnc-hgnc_symbol if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-hgnc_symbol.ttl is older than output/tsv/hgnc-hgnc_symbol.tsv +## Convert output/tsv/hgnc-hgnc_symbol.tsv => output/ttl/hgnc-hgnc_symbol.ttl +< 2024-11-23T02:14:29 hgnc-hgnc_symbol +togoid-config config/hgnc-hgnc_symbol convert +> 2024-11-23T02:14:30 hgnc-hgnc_symbol +### Update TTL for hgnc-insdc if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-insdc.ttl is older than output/tsv/hgnc-insdc.tsv +## Convert output/tsv/hgnc-insdc.tsv => output/ttl/hgnc-insdc.ttl +< 2024-11-23T02:14:30 hgnc-insdc +togoid-config config/hgnc-insdc convert +> 2024-11-23T02:14:30 hgnc-insdc +### Update TTL for hgnc-lrg if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-lrg.ttl is older than output/tsv/hgnc-lrg.tsv +## Convert output/tsv/hgnc-lrg.tsv => output/ttl/hgnc-lrg.ttl +< 2024-11-23T02:14:30 hgnc-lrg +togoid-config config/hgnc-lrg convert +> 2024-11-23T02:14:31 hgnc-lrg +### Update TTL for hgnc-mgi_gene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-mgi_gene.ttl is older than output/tsv/hgnc-mgi_gene.tsv +## Convert output/tsv/hgnc-mgi_gene.tsv => output/ttl/hgnc-mgi_gene.ttl +< 2024-11-23T02:14:31 hgnc-mgi_gene +togoid-config config/hgnc-mgi_gene convert +> 2024-11-23T02:14:31 hgnc-mgi_gene +### Update TTL for hgnc-mirbase if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-mirbase.ttl is older than output/tsv/hgnc-mirbase.tsv +## Convert output/tsv/hgnc-mirbase.tsv => output/ttl/hgnc-mirbase.ttl +< 2024-11-23T02:14:31 hgnc-mirbase +togoid-config config/hgnc-mirbase convert +> 2024-11-23T02:14:32 hgnc-mirbase +### Update TTL for hgnc-ncbigene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-ncbigene.ttl is older than output/tsv/hgnc-ncbigene.tsv +## Convert output/tsv/hgnc-ncbigene.tsv => output/ttl/hgnc-ncbigene.ttl +< 2024-11-23T02:14:32 hgnc-ncbigene +togoid-config config/hgnc-ncbigene convert +> 2024-11-23T02:14:32 hgnc-ncbigene +### Update TTL for hgnc-omim_gene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-omim_gene.ttl is older than output/tsv/hgnc-omim_gene.tsv +## Convert output/tsv/hgnc-omim_gene.tsv => output/ttl/hgnc-omim_gene.ttl +< 2024-11-23T02:14:32 hgnc-omim_gene +togoid-config config/hgnc-omim_gene convert +> 2024-11-23T02:14:33 hgnc-omim_gene +### Update TTL for hgnc-pubmed if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-pubmed.ttl is older than output/tsv/hgnc-pubmed.tsv +## Convert output/tsv/hgnc-pubmed.tsv => output/ttl/hgnc-pubmed.ttl +< 2024-11-23T02:14:33 hgnc-pubmed +togoid-config config/hgnc-pubmed convert +> 2024-11-23T02:14:33 hgnc-pubmed +### Update TTL for hgnc-refseq_genomic if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-refseq_genomic.ttl is older than output/tsv/hgnc-refseq_genomic.tsv +## Convert output/tsv/hgnc-refseq_genomic.tsv => output/ttl/hgnc-refseq_genomic.ttl +< 2024-11-23T02:14:33 hgnc-refseq_genomic +togoid-config config/hgnc-refseq_genomic convert +> 2024-11-23T02:14:34 hgnc-refseq_genomic +### Update TTL for hgnc-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-refseq_rna.ttl is older than output/tsv/hgnc-refseq_rna.tsv +## Convert output/tsv/hgnc-refseq_rna.tsv => output/ttl/hgnc-refseq_rna.ttl +< 2024-11-23T02:14:34 hgnc-refseq_rna +togoid-config config/hgnc-refseq_rna convert +> 2024-11-23T02:14:35 hgnc-refseq_rna +### Update TTL for hgnc-rgd if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-rgd.ttl is older than output/tsv/hgnc-rgd.tsv +## Convert output/tsv/hgnc-rgd.tsv => output/ttl/hgnc-rgd.ttl +< 2024-11-23T02:14:35 hgnc-rgd +togoid-config config/hgnc-rgd convert +> 2024-11-23T02:14:35 hgnc-rgd +### Update TTL for hgnc-uniprot if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-uniprot.ttl is older than output/tsv/hgnc-uniprot.tsv +## Convert output/tsv/hgnc-uniprot.tsv => output/ttl/hgnc-uniprot.ttl +< 2024-11-23T02:14:35 hgnc-uniprot +togoid-config config/hgnc-uniprot convert +> 2024-11-23T02:14:36 hgnc-uniprot ### Update TTL for hmdb-chebi if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/hmdb-chebi.ttl is newer than output/tsv/hmdb-chebi.tsv # => Preserving output/ttl/hmdb-chebi.ttl @@ -6085,9 +6150,9 @@ togoid-config config/glytoucan-uniprot convert ### Update TTL for hp_inheritance-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hp_inheritance-omim_phenotype.ttl is older than output/tsv/hp_inheritance-omim_phenotype.tsv ## Convert output/tsv/hp_inheritance-omim_phenotype.tsv => output/ttl/hp_inheritance-omim_phenotype.ttl -< 2024-11-16T07:41:37 hp_inheritance-omim_phenotype +< 2024-11-23T02:14:36 hp_inheritance-omim_phenotype togoid-config config/hp_inheritance-omim_phenotype convert -> 2024-11-16T07:41:37 hp_inheritance-omim_phenotype +> 2024-11-23T02:14:37 hp_inheritance-omim_phenotype ### Update TTL for hp_phenotype-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/hp_phenotype-omim_phenotype.ttl is newer than output/tsv/hp_phenotype-omim_phenotype.tsv # => Preserving output/ttl/hp_phenotype-omim_phenotype.ttl @@ -6097,27 +6162,27 @@ togoid-config config/hp_inheritance-omim_phenotype convert ### Update TTL for insdc-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc-bioproject.ttl is older than output/tsv/insdc-bioproject.tsv ## Convert output/tsv/insdc-bioproject.tsv => output/ttl/insdc-bioproject.ttl -< 2024-11-16T07:41:37 insdc-bioproject +< 2024-11-23T02:14:37 insdc-bioproject togoid-config config/insdc-bioproject convert -> 2024-11-16T07:50:57 insdc-bioproject +> 2024-11-23T02:24:09 insdc-bioproject ### Update TTL for insdc-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc-biosample.ttl is older than output/tsv/insdc-biosample.tsv ## Convert output/tsv/insdc-biosample.tsv => output/ttl/insdc-biosample.ttl -< 2024-11-16T07:50:57 insdc-biosample +< 2024-11-23T02:24:09 insdc-biosample togoid-config config/insdc-biosample convert -> 2024-11-16T08:30:10 insdc-biosample +> 2024-11-23T03:03:22 insdc-biosample ### Update TTL for insdc_master-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc_master-bioproject.ttl is older than output/tsv/insdc_master-bioproject.tsv ## Convert output/tsv/insdc_master-bioproject.tsv => output/ttl/insdc_master-bioproject.ttl -< 2024-11-16T08:30:10 insdc_master-bioproject +< 2024-11-23T03:03:22 insdc_master-bioproject togoid-config config/insdc_master-bioproject convert -> 2024-11-16T08:30:24 insdc_master-bioproject +> 2024-11-23T03:03:36 insdc_master-bioproject ### Update TTL for insdc_master-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc_master-biosample.ttl is older than output/tsv/insdc_master-biosample.tsv ## Convert output/tsv/insdc_master-biosample.tsv => output/ttl/insdc_master-biosample.ttl -< 2024-11-16T08:30:24 insdc_master-biosample +< 2024-11-23T03:03:36 insdc_master-biosample togoid-config config/insdc_master-biosample convert -> 2024-11-16T08:30:36 insdc_master-biosample +> 2024-11-23T03:03:50 insdc_master-biosample ### Update TTL for interpro-go if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/interpro-go.ttl is newer than output/tsv/interpro-go.tsv # => Preserving output/ttl/interpro-go.ttl @@ -6145,21 +6210,21 @@ togoid-config config/insdc_master-biosample convert ### Update TTL for jga_study-jga_dataset if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/jga_study-jga_dataset.ttl is older than output/tsv/jga_study-jga_dataset.tsv ## Convert output/tsv/jga_study-jga_dataset.tsv => output/ttl/jga_study-jga_dataset.ttl -< 2024-11-16T08:30:37 jga_study-jga_dataset +< 2024-11-23T03:03:50 jga_study-jga_dataset togoid-config config/jga_study-jga_dataset convert -> 2024-11-16T08:30:37 jga_study-jga_dataset +> 2024-11-23T03:03:50 jga_study-jga_dataset ### Update TTL for jga_study-nbdc_human_db if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/jga_study-nbdc_human_db.ttl is older than output/tsv/jga_study-nbdc_human_db.tsv ## Convert output/tsv/jga_study-nbdc_human_db.tsv => output/ttl/jga_study-nbdc_human_db.ttl -< 2024-11-16T08:30:37 jga_study-nbdc_human_db +< 2024-11-23T03:03:50 jga_study-nbdc_human_db togoid-config config/jga_study-nbdc_human_db convert -> 2024-11-16T08:30:37 jga_study-nbdc_human_db +> 2024-11-23T03:03:50 jga_study-nbdc_human_db ### Update TTL for jga_study-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/jga_study-pubmed.ttl is older than output/tsv/jga_study-pubmed.tsv ## Convert output/tsv/jga_study-pubmed.tsv => output/ttl/jga_study-pubmed.ttl -< 2024-11-16T08:30:37 jga_study-pubmed +< 2024-11-23T03:03:50 jga_study-pubmed togoid-config config/jga_study-pubmed convert -> 2024-11-16T08:30:37 jga_study-pubmed +> 2024-11-23T03:03:51 jga_study-pubmed ### Update TTL for lipidmaps-chebi if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/lipidmaps-chebi.ttl is newer than output/tsv/lipidmaps-chebi.tsv # => Preserving output/ttl/lipidmaps-chebi.ttl @@ -6178,87 +6243,87 @@ togoid-config config/jga_study-pubmed convert ### Update TTL for medgen-hp_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-hp_phenotype.ttl is older than output/tsv/medgen-hp_phenotype.tsv ## Convert output/tsv/medgen-hp_phenotype.tsv => output/ttl/medgen-hp_phenotype.ttl -< 2024-11-16T08:30:37 medgen-hp_phenotype +< 2024-11-23T03:03:51 medgen-hp_phenotype togoid-config config/medgen-hp_phenotype convert -> 2024-11-16T08:30:38 medgen-hp_phenotype +> 2024-11-23T03:03:51 medgen-hp_phenotype ### Update TTL for medgen-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-mesh.ttl is older than output/tsv/medgen-mesh.tsv ## Convert output/tsv/medgen-mesh.tsv => output/ttl/medgen-mesh.ttl -< 2024-11-16T08:30:38 medgen-mesh +< 2024-11-23T03:03:51 medgen-mesh togoid-config config/medgen-mesh convert -> 2024-11-16T08:30:38 medgen-mesh +> 2024-11-23T03:03:51 medgen-mesh ### Update TTL for medgen-mondo if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-mondo.ttl is older than output/tsv/medgen-mondo.tsv ## Convert output/tsv/medgen-mondo.tsv => output/ttl/medgen-mondo.ttl -< 2024-11-16T08:30:38 medgen-mondo +< 2024-11-23T03:03:51 medgen-mondo togoid-config config/medgen-mondo convert -> 2024-11-16T08:30:39 medgen-mondo +> 2024-11-23T03:03:52 medgen-mondo ### Update TTL for medgen-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-ncbigene.ttl is older than output/tsv/medgen-ncbigene.tsv ## Convert output/tsv/medgen-ncbigene.tsv => output/ttl/medgen-ncbigene.ttl -< 2024-11-16T08:30:39 medgen-ncbigene +< 2024-11-23T03:03:52 medgen-ncbigene togoid-config config/medgen-ncbigene convert -> 2024-11-16T08:30:39 medgen-ncbigene +> 2024-11-23T03:03:52 medgen-ncbigene ### Update TTL for medgen-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-omim_phenotype.ttl is older than output/tsv/medgen-omim_phenotype.tsv ## Convert output/tsv/medgen-omim_phenotype.tsv => output/ttl/medgen-omim_phenotype.ttl -< 2024-11-16T08:30:39 medgen-omim_phenotype +< 2024-11-23T03:03:52 medgen-omim_phenotype togoid-config config/medgen-omim_phenotype convert -> 2024-11-16T08:30:39 medgen-omim_phenotype +> 2024-11-23T03:03:52 medgen-omim_phenotype ### Update TTL for medgen-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-orphanet_phenotype.ttl is older than output/tsv/medgen-orphanet_phenotype.tsv ## Convert output/tsv/medgen-orphanet_phenotype.tsv => output/ttl/medgen-orphanet_phenotype.ttl -< 2024-11-16T08:30:39 medgen-orphanet_phenotype +< 2024-11-23T03:03:52 medgen-orphanet_phenotype togoid-config config/medgen-orphanet_phenotype convert -> 2024-11-16T08:30:40 medgen-orphanet_phenotype +> 2024-11-23T03:03:53 medgen-orphanet_phenotype ### Update TTL for mgi_gene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-ensembl_gene.ttl is older than output/tsv/mgi_gene-ensembl_gene.tsv ## Convert output/tsv/mgi_gene-ensembl_gene.tsv => output/ttl/mgi_gene-ensembl_gene.ttl -< 2024-11-16T08:30:40 mgi_gene-ensembl_gene +< 2024-11-23T03:03:53 mgi_gene-ensembl_gene togoid-config config/mgi_gene-ensembl_gene convert -> 2024-11-16T08:30:40 mgi_gene-ensembl_gene +> 2024-11-23T03:03:53 mgi_gene-ensembl_gene ### Update TTL for mgi_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-hgnc.ttl is older than output/tsv/mgi_gene-hgnc.tsv ## Convert output/tsv/mgi_gene-hgnc.tsv => output/ttl/mgi_gene-hgnc.ttl -< 2024-11-16T08:30:40 mgi_gene-hgnc +< 2024-11-23T03:03:53 mgi_gene-hgnc togoid-config config/mgi_gene-hgnc convert -> 2024-11-16T08:30:41 mgi_gene-hgnc +> 2024-11-23T03:03:54 mgi_gene-hgnc ### Update TTL for mgi_gene-mgi_allele if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-mgi_allele.ttl is older than output/tsv/mgi_gene-mgi_allele.tsv ## Convert output/tsv/mgi_gene-mgi_allele.tsv => output/ttl/mgi_gene-mgi_allele.ttl -< 2024-11-16T08:30:41 mgi_gene-mgi_allele +< 2024-11-23T03:03:54 mgi_gene-mgi_allele togoid-config config/mgi_gene-mgi_allele convert -> 2024-11-16T08:30:42 mgi_gene-mgi_allele +> 2024-11-23T03:03:55 mgi_gene-mgi_allele ### Update TTL for mgi_gene-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-ncbigene.ttl is older than output/tsv/mgi_gene-ncbigene.tsv ## Convert output/tsv/mgi_gene-ncbigene.tsv => output/ttl/mgi_gene-ncbigene.ttl -< 2024-11-16T08:30:42 mgi_gene-ncbigene +< 2024-11-23T03:03:55 mgi_gene-ncbigene togoid-config config/mgi_gene-ncbigene convert -> 2024-11-16T08:30:43 mgi_gene-ncbigene +> 2024-11-23T03:03:56 mgi_gene-ncbigene ### Update TTL for mgi_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-uniprot.ttl is older than output/tsv/mgi_gene-uniprot.tsv ## Convert output/tsv/mgi_gene-uniprot.tsv => output/ttl/mgi_gene-uniprot.ttl -< 2024-11-16T08:30:43 mgi_gene-uniprot +< 2024-11-23T03:03:56 mgi_gene-uniprot togoid-config config/mgi_gene-uniprot convert -> 2024-11-16T08:30:44 mgi_gene-uniprot +> 2024-11-23T03:03:57 mgi_gene-uniprot ### Update TTL for mgi_genotype-doid if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-doid.ttl is older than output/tsv/mgi_genotype-doid.tsv ## Convert output/tsv/mgi_genotype-doid.tsv => output/ttl/mgi_genotype-doid.ttl -< 2024-11-16T08:30:44 mgi_genotype-doid +< 2024-11-23T03:03:57 mgi_genotype-doid togoid-config config/mgi_genotype-doid convert -> 2024-11-16T08:30:44 mgi_genotype-doid +> 2024-11-23T03:03:57 mgi_genotype-doid ### Update TTL for mgi_genotype-mgi_allele if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-mgi_allele.ttl is older than output/tsv/mgi_genotype-mgi_allele.tsv ## Convert output/tsv/mgi_genotype-mgi_allele.tsv => output/ttl/mgi_genotype-mgi_allele.ttl -< 2024-11-16T08:30:44 mgi_genotype-mgi_allele +< 2024-11-23T03:03:57 mgi_genotype-mgi_allele togoid-config config/mgi_genotype-mgi_allele convert -> 2024-11-16T08:30:45 mgi_genotype-mgi_allele +> 2024-11-23T03:03:58 mgi_genotype-mgi_allele ### Update TTL for mgi_genotype-mp if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-mp.ttl is older than output/tsv/mgi_genotype-mp.tsv ## Convert output/tsv/mgi_genotype-mp.tsv => output/ttl/mgi_genotype-mp.ttl -< 2024-11-16T08:30:45 mgi_genotype-mp +< 2024-11-23T03:03:58 mgi_genotype-mp togoid-config config/mgi_genotype-mp convert -> 2024-11-16T08:30:49 mgi_genotype-mp +> 2024-11-23T03:04:01 mgi_genotype-mp ### Update TTL for mondo-doid if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/mondo-doid.ttl is newer than output/tsv/mondo-doid.tsv # => Preserving output/ttl/mondo-doid.ttl @@ -6280,135 +6345,135 @@ togoid-config config/mgi_genotype-mp convert ### Update TTL for nando-mondo if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/nando-mondo.ttl is older than output/tsv/nando-mondo.tsv ## Convert output/tsv/nando-mondo.tsv => output/ttl/nando-mondo.ttl -< 2024-11-16T08:30:49 nando-mondo +< 2024-11-23T03:04:01 nando-mondo togoid-config config/nando-mondo convert -> 2024-11-16T08:30:49 nando-mondo +> 2024-11-23T03:04:02 nando-mondo ### Update TTL for ncbigene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_gene.ttl is older than output/tsv/ncbigene-ensembl_gene.tsv ## Convert output/tsv/ncbigene-ensembl_gene.tsv => output/ttl/ncbigene-ensembl_gene.ttl -< 2024-11-16T08:30:49 ncbigene-ensembl_gene +< 2024-11-23T03:04:02 ncbigene-ensembl_gene togoid-config config/ncbigene-ensembl_gene convert -> 2024-11-16T08:32:31 ncbigene-ensembl_gene +> 2024-11-23T03:05:37 ncbigene-ensembl_gene ### Update TTL for ncbigene-ensembl_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_protein.ttl is older than output/tsv/ncbigene-ensembl_protein.tsv ## Convert output/tsv/ncbigene-ensembl_protein.tsv => output/ttl/ncbigene-ensembl_protein.ttl -< 2024-11-16T08:32:31 ncbigene-ensembl_protein +< 2024-11-23T03:05:37 ncbigene-ensembl_protein togoid-config config/ncbigene-ensembl_protein convert -> 2024-11-16T08:34:27 ncbigene-ensembl_protein +> 2024-11-23T03:07:31 ncbigene-ensembl_protein ### Update TTL for ncbigene-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_transcript.ttl is older than output/tsv/ncbigene-ensembl_transcript.tsv ## Convert output/tsv/ncbigene-ensembl_transcript.tsv => output/ttl/ncbigene-ensembl_transcript.ttl -< 2024-11-16T08:34:27 ncbigene-ensembl_transcript +< 2024-11-23T03:07:31 ncbigene-ensembl_transcript togoid-config config/ncbigene-ensembl_transcript convert -> 2024-11-16T08:36:27 ncbigene-ensembl_transcript +> 2024-11-23T03:10:11 ncbigene-ensembl_transcript ### Update TTL for ncbigene-flybase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-flybase_gene.ttl is older than output/tsv/ncbigene-flybase_gene.tsv ## Convert output/tsv/ncbigene-flybase_gene.tsv => output/ttl/ncbigene-flybase_gene.ttl -< 2024-11-16T08:36:27 ncbigene-flybase_gene +< 2024-11-23T03:10:11 ncbigene-flybase_gene togoid-config config/ncbigene-flybase_gene convert -> 2024-11-16T08:36:28 ncbigene-flybase_gene +> 2024-11-23T03:10:12 ncbigene-flybase_gene ### Update TTL for ncbigene-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-go.ttl is older than output/tsv/ncbigene-go.tsv ## Convert output/tsv/ncbigene-go.tsv => output/ttl/ncbigene-go.ttl -< 2024-11-16T08:36:28 ncbigene-go +< 2024-11-23T03:10:12 ncbigene-go togoid-config config/ncbigene-go convert -> 2024-11-16T08:54:06 ncbigene-go +> 2024-11-23T03:27:38 ncbigene-go ### Update TTL for ncbigene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-hgnc.ttl is older than output/tsv/ncbigene-hgnc.tsv ## Convert output/tsv/ncbigene-hgnc.tsv => output/ttl/ncbigene-hgnc.ttl -< 2024-11-16T08:54:06 ncbigene-hgnc +< 2024-11-23T03:27:38 ncbigene-hgnc togoid-config config/ncbigene-hgnc convert -> 2024-11-16T08:54:07 ncbigene-hgnc +> 2024-11-23T03:27:39 ncbigene-hgnc ### Update TTL for ncbigene-mgi_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-mgi_gene.ttl is older than output/tsv/ncbigene-mgi_gene.tsv ## Convert output/tsv/ncbigene-mgi_gene.tsv => output/ttl/ncbigene-mgi_gene.ttl -< 2024-11-16T08:54:07 ncbigene-mgi_gene +< 2024-11-23T03:27:39 ncbigene-mgi_gene togoid-config config/ncbigene-mgi_gene convert -> 2024-11-16T08:54:07 ncbigene-mgi_gene +> 2024-11-23T03:27:40 ncbigene-mgi_gene ### Update TTL for ncbigene-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-mirbase.ttl is older than output/tsv/ncbigene-mirbase.tsv ## Convert output/tsv/ncbigene-mirbase.tsv => output/ttl/ncbigene-mirbase.ttl -< 2024-11-16T08:54:07 ncbigene-mirbase +< 2024-11-23T03:27:40 ncbigene-mirbase togoid-config config/ncbigene-mirbase convert -> 2024-11-16T08:54:08 ncbigene-mirbase +> 2024-11-23T03:27:40 ncbigene-mirbase ### Update TTL for ncbigene-omim_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-omim_gene.ttl is older than output/tsv/ncbigene-omim_gene.tsv ## Convert output/tsv/ncbigene-omim_gene.tsv => output/ttl/ncbigene-omim_gene.ttl -< 2024-11-16T08:54:08 ncbigene-omim_gene +< 2024-11-23T03:27:40 ncbigene-omim_gene togoid-config config/ncbigene-omim_gene convert -> 2024-11-16T08:54:08 ncbigene-omim_gene +> 2024-11-23T03:27:41 ncbigene-omim_gene ### Update TTL for ncbigene-refseq_genomic if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_genomic.ttl is older than output/tsv/ncbigene-refseq_genomic.tsv ## Convert output/tsv/ncbigene-refseq_genomic.tsv => output/ttl/ncbigene-refseq_genomic.ttl -< 2024-11-16T08:54:08 ncbigene-refseq_genomic +< 2024-11-23T03:27:41 ncbigene-refseq_genomic togoid-config config/ncbigene-refseq_genomic convert -> 2024-11-16T08:54:10 ncbigene-refseq_genomic +> 2024-11-23T03:27:43 ncbigene-refseq_genomic ### Update TTL for ncbigene-refseq_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_protein.ttl is older than output/tsv/ncbigene-refseq_protein.tsv ## Convert output/tsv/ncbigene-refseq_protein.tsv => output/ttl/ncbigene-refseq_protein.ttl -< 2024-11-16T08:54:10 ncbigene-refseq_protein +< 2024-11-23T03:27:43 ncbigene-refseq_protein togoid-config config/ncbigene-refseq_protein convert -> 2024-11-16T09:07:44 ncbigene-refseq_protein +> 2024-11-23T03:41:06 ncbigene-refseq_protein ### Update TTL for ncbigene-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_rna.ttl is older than output/tsv/ncbigene-refseq_rna.tsv ## Convert output/tsv/ncbigene-refseq_rna.tsv => output/ttl/ncbigene-refseq_rna.ttl -< 2024-11-16T09:07:44 ncbigene-refseq_rna +< 2024-11-23T03:41:06 ncbigene-refseq_rna togoid-config config/ncbigene-refseq_rna convert -> 2024-11-16T09:19:08 ncbigene-refseq_rna +> 2024-11-23T03:52:28 ncbigene-refseq_rna ### Update TTL for ncbigene-rgd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-rgd.ttl is older than output/tsv/ncbigene-rgd.tsv ## Convert output/tsv/ncbigene-rgd.tsv => output/ttl/ncbigene-rgd.ttl -< 2024-11-16T09:19:08 ncbigene-rgd +< 2024-11-23T03:52:28 ncbigene-rgd togoid-config config/ncbigene-rgd convert -> 2024-11-16T09:19:09 ncbigene-rgd +> 2024-11-23T03:52:29 ncbigene-rgd ### Update TTL for ncbigene-sgd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-sgd.ttl is older than output/tsv/ncbigene-sgd.tsv ## Convert output/tsv/ncbigene-sgd.tsv => output/ttl/ncbigene-sgd.ttl -< 2024-11-16T09:19:09 ncbigene-sgd +< 2024-11-23T03:52:29 ncbigene-sgd togoid-config config/ncbigene-sgd convert -> 2024-11-16T09:19:09 ncbigene-sgd +> 2024-11-23T03:52:30 ncbigene-sgd ### Update TTL for ncbigene-tair if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-tair.ttl is older than output/tsv/ncbigene-tair.tsv ## Convert output/tsv/ncbigene-tair.tsv => output/ttl/ncbigene-tair.ttl -< 2024-11-16T09:19:09 ncbigene-tair +< 2024-11-23T03:52:30 ncbigene-tair togoid-config config/ncbigene-tair convert -> 2024-11-16T09:19:10 ncbigene-tair +> 2024-11-23T03:52:30 ncbigene-tair ### Update TTL for ncbigene-taxonomy if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-taxonomy.ttl is older than output/tsv/ncbigene-taxonomy.tsv ## Convert output/tsv/ncbigene-taxonomy.tsv => output/ttl/ncbigene-taxonomy.ttl -< 2024-11-16T09:19:10 ncbigene-taxonomy +< 2024-11-23T03:52:30 ncbigene-taxonomy togoid-config config/ncbigene-taxonomy convert -> 2024-11-16T09:27:58 ncbigene-taxonomy +> 2024-11-23T04:01:12 ncbigene-taxonomy ### Update TTL for ncbigene-vgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-vgnc.ttl is older than output/tsv/ncbigene-vgnc.tsv ## Convert output/tsv/ncbigene-vgnc.tsv => output/ttl/ncbigene-vgnc.ttl -< 2024-11-16T09:27:58 ncbigene-vgnc +< 2024-11-23T04:01:12 ncbigene-vgnc togoid-config config/ncbigene-vgnc convert -> 2024-11-16T09:27:59 ncbigene-vgnc +> 2024-11-23T04:01:14 ncbigene-vgnc ### Update TTL for ncbigene-wormbase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-wormbase_gene.ttl is older than output/tsv/ncbigene-wormbase_gene.tsv ## Convert output/tsv/ncbigene-wormbase_gene.tsv => output/ttl/ncbigene-wormbase_gene.ttl -< 2024-11-16T09:27:59 ncbigene-wormbase_gene +< 2024-11-23T04:01:14 ncbigene-wormbase_gene togoid-config config/ncbigene-wormbase_gene convert -> 2024-11-16T09:27:59 ncbigene-wormbase_gene +> 2024-11-23T04:01:14 ncbigene-wormbase_gene ### Update TTL for ncbigene-xenbase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-xenbase_gene.ttl is older than output/tsv/ncbigene-xenbase_gene.tsv ## Convert output/tsv/ncbigene-xenbase_gene.tsv => output/ttl/ncbigene-xenbase_gene.ttl -< 2024-11-16T09:27:59 ncbigene-xenbase_gene +< 2024-11-23T04:01:14 ncbigene-xenbase_gene togoid-config config/ncbigene-xenbase_gene convert -> 2024-11-16T09:28:00 ncbigene-xenbase_gene +> 2024-11-23T04:01:15 ncbigene-xenbase_gene ### Update TTL for ncbigene-zfin_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-zfin_gene.ttl is older than output/tsv/ncbigene-zfin_gene.tsv ## Convert output/tsv/ncbigene-zfin_gene.tsv => output/ttl/ncbigene-zfin_gene.ttl -< 2024-11-16T09:28:00 ncbigene-zfin_gene +< 2024-11-23T04:01:15 ncbigene-zfin_gene togoid-config config/ncbigene-zfin_gene convert -> 2024-11-16T09:28:00 ncbigene-zfin_gene +> 2024-11-23T04:01:15 ncbigene-zfin_gene ### Update TTL for ncit_disease-ncit_tissue if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncit_disease-ncit_tissue.ttl is older than output/tsv/ncit_disease-ncit_tissue.tsv ## Convert output/tsv/ncit_disease-ncit_tissue.tsv => output/ttl/ncit_disease-ncit_tissue.ttl -< 2024-11-16T09:28:00 ncit_disease-ncit_tissue +< 2024-11-23T04:01:15 ncit_disease-ncit_tissue togoid-config config/ncit_disease-ncit_tissue convert -> 2024-11-16T09:28:01 ncit_disease-ncit_tissue +> 2024-11-23T04:01:16 ncit_disease-ncit_tissue ### Update TTL for oma_protein-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/oma_protein-ensembl_gene.ttl is newer than output/tsv/oma_protein-ensembl_gene.tsv # => Preserving output/ttl/oma_protein-ensembl_gene.ttl @@ -6424,276 +6489,255 @@ togoid-config config/ncit_disease-ncit_tissue convert ### Update TTL for orphanet_gene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-ensembl_gene.ttl is older than output/tsv/orphanet_gene-ensembl_gene.tsv ## Convert output/tsv/orphanet_gene-ensembl_gene.tsv => output/ttl/orphanet_gene-ensembl_gene.ttl -< 2024-11-16T09:28:01 orphanet_gene-ensembl_gene +< 2024-11-23T04:01:16 orphanet_gene-ensembl_gene togoid-config config/orphanet_gene-ensembl_gene convert -> 2024-11-16T09:28:01 orphanet_gene-ensembl_gene +> 2024-11-23T04:01:16 orphanet_gene-ensembl_gene ### Update TTL for orphanet_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-hgnc.ttl is older than output/tsv/orphanet_gene-hgnc.tsv ## Convert output/tsv/orphanet_gene-hgnc.tsv => output/ttl/orphanet_gene-hgnc.ttl -< 2024-11-16T09:28:01 orphanet_gene-hgnc +< 2024-11-23T04:01:16 orphanet_gene-hgnc togoid-config config/orphanet_gene-hgnc convert -> 2024-11-16T09:28:02 orphanet_gene-hgnc +> 2024-11-23T04:01:16 orphanet_gene-hgnc ### Update TTL for orphanet_gene-omim_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-omim_gene.ttl is older than output/tsv/orphanet_gene-omim_gene.tsv ## Convert output/tsv/orphanet_gene-omim_gene.tsv => output/ttl/orphanet_gene-omim_gene.ttl -< 2024-11-16T09:28:02 orphanet_gene-omim_gene +< 2024-11-23T04:01:16 orphanet_gene-omim_gene togoid-config config/orphanet_gene-omim_gene convert -> 2024-11-16T09:28:02 orphanet_gene-omim_gene +> 2024-11-23T04:01:17 orphanet_gene-omim_gene ### Update TTL for orphanet_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-uniprot.ttl is older than output/tsv/orphanet_gene-uniprot.tsv ## Convert output/tsv/orphanet_gene-uniprot.tsv => output/ttl/orphanet_gene-uniprot.ttl -< 2024-11-16T09:28:02 orphanet_gene-uniprot +< 2024-11-23T04:01:17 orphanet_gene-uniprot togoid-config config/orphanet_gene-uniprot convert -> 2024-11-16T09:28:02 orphanet_gene-uniprot +> 2024-11-23T04:01:17 orphanet_gene-uniprot ### Update TTL for orphanet_phenotype-meddra if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-meddra.ttl is older than output/tsv/orphanet_phenotype-meddra.tsv ## Convert output/tsv/orphanet_phenotype-meddra.tsv => output/ttl/orphanet_phenotype-meddra.ttl -< 2024-11-16T09:28:02 orphanet_phenotype-meddra +< 2024-11-23T04:01:17 orphanet_phenotype-meddra togoid-config config/orphanet_phenotype-meddra convert -> 2024-11-16T09:28:02 orphanet_phenotype-meddra +> 2024-11-23T04:01:17 orphanet_phenotype-meddra ### Update TTL for orphanet_phenotype-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-mesh.ttl is older than output/tsv/orphanet_phenotype-mesh.tsv ## Convert output/tsv/orphanet_phenotype-mesh.tsv => output/ttl/orphanet_phenotype-mesh.ttl -< 2024-11-16T09:28:02 orphanet_phenotype-mesh +< 2024-11-23T04:01:17 orphanet_phenotype-mesh togoid-config config/orphanet_phenotype-mesh convert -> 2024-11-16T09:28:03 orphanet_phenotype-mesh +> 2024-11-23T04:01:17 orphanet_phenotype-mesh ### Update TTL for orphanet_phenotype-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-omim_phenotype.ttl is older than output/tsv/orphanet_phenotype-omim_phenotype.tsv ## Convert output/tsv/orphanet_phenotype-omim_phenotype.tsv => output/ttl/orphanet_phenotype-omim_phenotype.ttl -< 2024-11-16T09:28:03 orphanet_phenotype-omim_phenotype +< 2024-11-23T04:01:17 orphanet_phenotype-omim_phenotype togoid-config config/orphanet_phenotype-omim_phenotype convert -> 2024-11-16T09:28:03 orphanet_phenotype-omim_phenotype +> 2024-11-23T04:01:17 orphanet_phenotype-omim_phenotype ### Update TTL for orphanet_phenotype-orphanet_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-orphanet_gene.ttl is older than output/tsv/orphanet_phenotype-orphanet_gene.tsv ## Convert output/tsv/orphanet_phenotype-orphanet_gene.tsv => output/ttl/orphanet_phenotype-orphanet_gene.ttl -< 2024-11-16T09:28:03 orphanet_phenotype-orphanet_gene +< 2024-11-23T04:01:17 orphanet_phenotype-orphanet_gene togoid-config config/orphanet_phenotype-orphanet_gene convert -> 2024-11-16T09:28:03 orphanet_phenotype-orphanet_gene +> 2024-11-23T04:01:18 orphanet_phenotype-orphanet_gene ### Update TTL for pdb-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-go.ttl is older than output/tsv/pdb-go.tsv ## Convert output/tsv/pdb-go.tsv => output/ttl/pdb-go.ttl -< 2024-11-16T09:28:03 pdb-go +< 2024-11-23T04:01:18 pdb-go togoid-config config/pdb-go convert -> 2024-11-16T09:28:15 pdb-go +> 2024-11-23T04:01:31 pdb-go ### Update TTL for pdb-interpro if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-interpro.ttl is older than output/tsv/pdb-interpro.tsv ## Convert output/tsv/pdb-interpro.tsv => output/ttl/pdb-interpro.ttl -< 2024-11-16T09:28:15 pdb-interpro +< 2024-11-23T04:01:31 pdb-interpro togoid-config config/pdb-interpro convert -> 2024-11-16T09:28:21 pdb-interpro +> 2024-11-23T04:01:37 pdb-interpro ### Update TTL for pdb-pdb_ccd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-pdb_ccd.ttl is older than output/tsv/pdb-pdb_ccd.tsv ## Convert output/tsv/pdb-pdb_ccd.tsv => output/ttl/pdb-pdb_ccd.ttl -< 2024-11-16T09:28:21 pdb-pdb_ccd +< 2024-11-23T04:01:37 pdb-pdb_ccd togoid-config config/pdb-pdb_ccd convert -> 2024-11-16T09:28:24 pdb-pdb_ccd +> 2024-11-23T04:01:42 pdb-pdb_ccd ### Update TTL for pdb-pfam if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-pfam.ttl is older than output/tsv/pdb-pfam.tsv ## Convert output/tsv/pdb-pfam.tsv => output/ttl/pdb-pfam.ttl -< 2024-11-16T09:28:24 pdb-pfam +< 2024-11-23T04:01:42 pdb-pfam togoid-config config/pdb-pfam convert -> 2024-11-16T09:28:27 pdb-pfam +> 2024-11-23T04:01:44 pdb-pfam ### Update TTL for pdb-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-uniprot.ttl is older than output/tsv/pdb-uniprot.tsv ## Convert output/tsv/pdb-uniprot.tsv => output/ttl/pdb-uniprot.ttl -< 2024-11-16T09:28:27 pdb-uniprot +< 2024-11-23T04:01:44 pdb-uniprot togoid-config config/pdb-uniprot convert -> 2024-11-16T09:28:30 pdb-uniprot +> 2024-11-23T04:01:47 pdb-uniprot ### Update TTL for pmc-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pmc-pubmed.ttl is older than output/tsv/pmc-pubmed.tsv ## Convert output/tsv/pmc-pubmed.tsv => output/ttl/pmc-pubmed.ttl -< 2024-11-16T09:28:30 pmc-pubmed +< 2024-11-23T04:01:47 pmc-pubmed togoid-config config/pmc-pubmed convert -> 2024-11-16T09:29:40 pmc-pubmed +> 2024-11-23T04:02:59 pmc-pubmed ### Update TTL for prosite-prosite_prorule if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/prosite-prosite_prorule.ttl is newer than output/tsv/prosite-prosite_prorule.tsv # => Preserving output/ttl/prosite-prosite_prorule.ttl ### Update TTL for pubchem_compound-atc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-atc.ttl is older than output/tsv/pubchem_compound-atc.tsv ## Convert output/tsv/pubchem_compound-atc.tsv => output/ttl/pubchem_compound-atc.ttl -< 2024-11-16T09:29:40 pubchem_compound-atc +< 2024-11-23T04:02:59 pubchem_compound-atc togoid-config config/pubchem_compound-atc convert -> 2024-11-16T09:29:41 pubchem_compound-atc +> 2024-11-23T04:03:00 pubchem_compound-atc ### Update TTL for pubchem_compound-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-chebi.ttl is older than output/tsv/pubchem_compound-chebi.tsv ## Convert output/tsv/pubchem_compound-chebi.tsv => output/ttl/pubchem_compound-chebi.ttl -< 2024-11-16T09:29:41 pubchem_compound-chebi +< 2024-11-23T04:03:00 pubchem_compound-chebi togoid-config config/pubchem_compound-chebi convert -> 2024-11-16T09:29:42 pubchem_compound-chebi +> 2024-11-23T04:03:01 pubchem_compound-chebi ### Update TTL for pubchem_compound-chembl_compound if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-chembl_compound.ttl is older than output/tsv/pubchem_compound-chembl_compound.tsv ## Convert output/tsv/pubchem_compound-chembl_compound.tsv => output/ttl/pubchem_compound-chembl_compound.ttl -< 2024-11-16T09:29:42 pubchem_compound-chembl_compound +< 2024-11-23T04:03:01 pubchem_compound-chembl_compound togoid-config config/pubchem_compound-chembl_compound convert -> 2024-11-16T09:30:02 pubchem_compound-chembl_compound +> 2024-11-23T04:03:21 pubchem_compound-chembl_compound ### Update TTL for pubchem_compound-drugbank if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-drugbank.ttl is older than output/tsv/pubchem_compound-drugbank.tsv ## Convert output/tsv/pubchem_compound-drugbank.tsv => output/ttl/pubchem_compound-drugbank.ttl -< 2024-11-16T09:30:02 pubchem_compound-drugbank +< 2024-11-23T04:03:21 pubchem_compound-drugbank togoid-config config/pubchem_compound-drugbank convert -> 2024-11-16T09:30:03 pubchem_compound-drugbank +> 2024-11-23T04:03:22 pubchem_compound-drugbank ### Update TTL for pubchem_compound-glytoucan if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-glytoucan.ttl is older than output/tsv/pubchem_compound-glytoucan.tsv ## Convert output/tsv/pubchem_compound-glytoucan.tsv => output/ttl/pubchem_compound-glytoucan.ttl -< 2024-11-16T09:30:03 pubchem_compound-glytoucan +< 2024-11-23T04:03:22 pubchem_compound-glytoucan togoid-config config/pubchem_compound-glytoucan convert -> 2024-11-16T09:30:03 pubchem_compound-glytoucan +> 2024-11-23T04:03:22 pubchem_compound-glytoucan ### Update TTL for pubchem_compound-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-inchi_key.ttl is older than output/tsv/pubchem_compound-inchi_key.tsv ## Convert output/tsv/pubchem_compound-inchi_key.tsv => output/ttl/pubchem_compound-inchi_key.ttl -< 2024-11-16T09:30:03 pubchem_compound-inchi_key +< 2024-11-23T04:03:22 pubchem_compound-inchi_key togoid-config config/pubchem_compound-inchi_key convert -> 2024-11-16T10:12:36 pubchem_compound-inchi_key +> 2024-11-23T04:44:55 pubchem_compound-inchi_key ### Update TTL for pubchem_pathway-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-ncbigene.ttl is older than output/tsv/pubchem_pathway-ncbigene.tsv ## Convert output/tsv/pubchem_pathway-ncbigene.tsv => output/ttl/pubchem_pathway-ncbigene.ttl -< 2024-11-16T10:12:36 pubchem_pathway-ncbigene +< 2024-11-23T04:44:55 pubchem_pathway-ncbigene togoid-config config/pubchem_pathway-ncbigene convert -> 2024-11-16T10:12:37 pubchem_pathway-ncbigene +> 2024-11-23T04:44:57 pubchem_pathway-ncbigene ### Update TTL for pubchem_pathway-pathbank if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-pathbank.ttl is older than output/tsv/pubchem_pathway-pathbank.tsv ## Convert output/tsv/pubchem_pathway-pathbank.tsv => output/ttl/pubchem_pathway-pathbank.ttl -< 2024-11-16T10:12:37 pubchem_pathway-pathbank +< 2024-11-23T04:44:57 pubchem_pathway-pathbank togoid-config config/pubchem_pathway-pathbank convert -> 2024-11-16T10:12:38 pubchem_pathway-pathbank +> 2024-11-23T04:44:58 pubchem_pathway-pathbank ### Update TTL for pubchem_pathway-pubchem_compound if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-pubchem_compound.ttl is older than output/tsv/pubchem_pathway-pubchem_compound.tsv ## Convert output/tsv/pubchem_pathway-pubchem_compound.tsv => output/ttl/pubchem_pathway-pubchem_compound.ttl -< 2024-11-16T10:12:38 pubchem_pathway-pubchem_compound +< 2024-11-23T04:44:58 pubchem_pathway-pubchem_compound togoid-config config/pubchem_pathway-pubchem_compound convert -> 2024-11-16T10:12:47 pubchem_pathway-pubchem_compound +> 2024-11-23T04:45:08 pubchem_pathway-pubchem_compound ### Update TTL for pubchem_pathway-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-reactome_pathway.ttl is older than output/tsv/pubchem_pathway-reactome_pathway.tsv ## Convert output/tsv/pubchem_pathway-reactome_pathway.tsv => output/ttl/pubchem_pathway-reactome_pathway.ttl -< 2024-11-16T10:12:47 pubchem_pathway-reactome_pathway +< 2024-11-23T04:45:08 pubchem_pathway-reactome_pathway togoid-config config/pubchem_pathway-reactome_pathway convert -> 2024-11-16T10:12:48 pubchem_pathway-reactome_pathway +> 2024-11-23T04:45:08 pubchem_pathway-reactome_pathway ### Update TTL for pubchem_pathway-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-uniprot.ttl is older than output/tsv/pubchem_pathway-uniprot.tsv ## Convert output/tsv/pubchem_pathway-uniprot.tsv => output/ttl/pubchem_pathway-uniprot.ttl -< 2024-11-16T10:12:48 pubchem_pathway-uniprot +< 2024-11-23T04:45:08 pubchem_pathway-uniprot togoid-config config/pubchem_pathway-uniprot convert -> 2024-11-16T10:12:52 pubchem_pathway-uniprot +> 2024-11-23T04:45:13 pubchem_pathway-uniprot ### Update TTL for pubchem_pathway-wikipathways if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-wikipathways.ttl is older than output/tsv/pubchem_pathway-wikipathways.tsv ## Convert output/tsv/pubchem_pathway-wikipathways.tsv => output/ttl/pubchem_pathway-wikipathways.ttl -< 2024-11-16T10:12:52 pubchem_pathway-wikipathways +< 2024-11-23T04:45:13 pubchem_pathway-wikipathways togoid-config config/pubchem_pathway-wikipathways convert -> 2024-11-16T10:12:53 pubchem_pathway-wikipathways +> 2024-11-23T04:45:13 pubchem_pathway-wikipathways ### Update TTL for reactome_pathway-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-chebi.ttl is older than output/tsv/reactome_pathway-chebi.tsv ## Convert output/tsv/reactome_pathway-chebi.tsv => output/ttl/reactome_pathway-chebi.ttl -< 2024-11-16T10:12:53 reactome_pathway-chebi +< 2024-11-23T04:45:13 reactome_pathway-chebi togoid-config config/reactome_pathway-chebi convert -> 2024-11-16T10:12:55 reactome_pathway-chebi +> 2024-11-23T04:45:15 reactome_pathway-chebi ### Update TTL for reactome_pathway-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-go.ttl is older than output/tsv/reactome_pathway-go.tsv ## Convert output/tsv/reactome_pathway-go.tsv => output/ttl/reactome_pathway-go.ttl -< 2024-11-16T10:12:55 reactome_pathway-go +< 2024-11-23T04:45:15 reactome_pathway-go togoid-config config/reactome_pathway-go convert -> 2024-11-16T10:12:56 reactome_pathway-go +> 2024-11-23T04:45:16 reactome_pathway-go ### Update TTL for reactome_pathway-iuphar_ligand if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-iuphar_ligand.ttl is older than output/tsv/reactome_pathway-iuphar_ligand.tsv ## Convert output/tsv/reactome_pathway-iuphar_ligand.tsv => output/ttl/reactome_pathway-iuphar_ligand.ttl -< 2024-11-16T10:12:56 reactome_pathway-iuphar_ligand +< 2024-11-23T04:45:16 reactome_pathway-iuphar_ligand togoid-config config/reactome_pathway-iuphar_ligand convert -> 2024-11-16T10:12:56 reactome_pathway-iuphar_ligand +> 2024-11-23T04:45:16 reactome_pathway-iuphar_ligand ### Update TTL for reactome_pathway-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-mirbase.ttl is older than output/tsv/reactome_pathway-mirbase.tsv ## Convert output/tsv/reactome_pathway-mirbase.tsv => output/ttl/reactome_pathway-mirbase.ttl -< 2024-11-16T10:12:57 reactome_pathway-mirbase +< 2024-11-23T04:45:16 reactome_pathway-mirbase togoid-config config/reactome_pathway-mirbase convert -> 2024-11-16T10:12:57 reactome_pathway-mirbase +> 2024-11-23T04:45:17 reactome_pathway-mirbase ### Update TTL for reactome_pathway-reactome_reaction if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-reactome_reaction.ttl is older than output/tsv/reactome_pathway-reactome_reaction.tsv ## Convert output/tsv/reactome_pathway-reactome_reaction.tsv => output/ttl/reactome_pathway-reactome_reaction.ttl -< 2024-11-16T10:12:57 reactome_pathway-reactome_reaction +< 2024-11-23T04:45:17 reactome_pathway-reactome_reaction togoid-config config/reactome_pathway-reactome_reaction convert -> 2024-11-16T10:13:00 reactome_pathway-reactome_reaction +> 2024-11-23T04:45:21 reactome_pathway-reactome_reaction ### Update TTL for reactome_pathway-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-uniprot.ttl is older than output/tsv/reactome_pathway-uniprot.tsv ## Convert output/tsv/reactome_pathway-uniprot.tsv => output/ttl/reactome_pathway-uniprot.ttl -< 2024-11-16T10:13:00 reactome_pathway-uniprot +< 2024-11-23T04:45:21 reactome_pathway-uniprot togoid-config config/reactome_pathway-uniprot convert -> 2024-11-16T10:13:07 reactome_pathway-uniprot +> 2024-11-23T04:45:28 reactome_pathway-uniprot ### Update TTL for reactome_reaction-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-chebi.ttl is older than output/tsv/reactome_reaction-chebi.tsv ## Convert output/tsv/reactome_reaction-chebi.tsv => output/ttl/reactome_reaction-chebi.ttl -< 2024-11-16T10:13:07 reactome_reaction-chebi +< 2024-11-23T04:45:28 reactome_reaction-chebi togoid-config config/reactome_reaction-chebi convert -> 2024-11-16T10:13:09 reactome_reaction-chebi +> 2024-11-23T04:45:30 reactome_reaction-chebi ### Update TTL for reactome_reaction-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-go.ttl is older than output/tsv/reactome_reaction-go.tsv ## Convert output/tsv/reactome_reaction-go.tsv => output/ttl/reactome_reaction-go.ttl -< 2024-11-16T10:13:09 reactome_reaction-go +< 2024-11-23T04:45:30 reactome_reaction-go togoid-config config/reactome_reaction-go convert -> 2024-11-16T10:13:09 reactome_reaction-go +> 2024-11-23T04:45:30 reactome_reaction-go ### Update TTL for reactome_reaction-iuphar_ligand if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-iuphar_ligand.ttl is older than output/tsv/reactome_reaction-iuphar_ligand.tsv ## Convert output/tsv/reactome_reaction-iuphar_ligand.tsv => output/ttl/reactome_reaction-iuphar_ligand.ttl -< 2024-11-16T10:13:09 reactome_reaction-iuphar_ligand +< 2024-11-23T04:45:30 reactome_reaction-iuphar_ligand togoid-config config/reactome_reaction-iuphar_ligand convert -> 2024-11-16T10:13:10 reactome_reaction-iuphar_ligand +> 2024-11-23T04:45:30 reactome_reaction-iuphar_ligand ### Update TTL for reactome_reaction-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-mirbase.ttl is older than output/tsv/reactome_reaction-mirbase.tsv ## Convert output/tsv/reactome_reaction-mirbase.tsv => output/ttl/reactome_reaction-mirbase.ttl -< 2024-11-16T10:13:10 reactome_reaction-mirbase +< 2024-11-23T04:45:30 reactome_reaction-mirbase togoid-config config/reactome_reaction-mirbase convert -> 2024-11-16T10:13:10 reactome_reaction-mirbase +> 2024-11-23T04:45:31 reactome_reaction-mirbase ### Update TTL for reactome_reaction-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-uniprot.ttl is older than output/tsv/reactome_reaction-uniprot.tsv ## Convert output/tsv/reactome_reaction-uniprot.tsv => output/ttl/reactome_reaction-uniprot.ttl -< 2024-11-16T10:13:10 reactome_reaction-uniprot +< 2024-11-23T04:45:31 reactome_reaction-uniprot togoid-config config/reactome_reaction-uniprot convert -> 2024-11-16T10:13:16 reactome_reaction-uniprot +> 2024-11-23T04:45:36 reactome_reaction-uniprot ### Update TTL for refseq_protein-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/refseq_protein-uniprot.ttl is older than output/tsv/refseq_protein-uniprot.tsv ## Convert output/tsv/refseq_protein-uniprot.tsv => output/ttl/refseq_protein-uniprot.ttl -< 2024-11-16T10:13:16 refseq_protein-uniprot +< 2024-11-23T04:45:36 refseq_protein-uniprot togoid-config config/refseq_protein-uniprot convert -> 2024-11-16T11:03:43 refseq_protein-uniprot -### Update TTL for refseq_rna-dbsnp if check_ttl_filesize false or check_ttl_timestamp true -# File output/ttl/refseq_rna-dbsnp.ttl is older than output/tsv/refseq_rna-dbsnp.tsv -## Convert output/tsv/refseq_rna-dbsnp.tsv => output/ttl/refseq_rna-dbsnp.ttl -< 2024-11-16T11:03:43 refseq_rna-dbsnp -togoid-config config/refseq_rna-dbsnp convert -> 2024-11-16T12:33:34 refseq_rna-dbsnp -### Update TTL for refseq_rna-hgnc if check_ttl_filesize false or check_ttl_timestamp true -# File output/ttl/refseq_rna-hgnc.ttl is older than output/tsv/refseq_rna-hgnc.tsv -## Convert output/tsv/refseq_rna-hgnc.tsv => output/ttl/refseq_rna-hgnc.ttl -< 2024-11-16T12:33:34 refseq_rna-hgnc -togoid-config config/refseq_rna-hgnc convert -> 2024-11-16T12:33:36 refseq_rna-hgnc -### Update TTL for refseq_rna-ncbigene if check_ttl_filesize false or check_ttl_timestamp true -# File output/ttl/refseq_rna-ncbigene.ttl is older than output/tsv/refseq_rna-ncbigene.tsv -## Convert output/tsv/refseq_rna-ncbigene.tsv => output/ttl/refseq_rna-ncbigene.ttl -< 2024-11-16T12:33:36 refseq_rna-ncbigene -togoid-config config/refseq_rna-ncbigene convert -> 2024-11-16T12:44:49 refseq_rna-ncbigene -### Update TTL for refseq_rna-omim_gene if check_ttl_filesize false or check_ttl_timestamp true -# File output/ttl/refseq_rna-omim_gene.ttl is older than output/tsv/refseq_rna-omim_gene.tsv -## Convert output/tsv/refseq_rna-omim_gene.tsv => output/ttl/refseq_rna-omim_gene.ttl -< 2024-11-16T12:44:49 refseq_rna-omim_gene -togoid-config config/refseq_rna-omim_gene convert -> 2024-11-16T12:44:51 refseq_rna-omim_gene -### Update TTL for refseq_rna-pubmed if check_ttl_filesize false or check_ttl_timestamp true -# File output/ttl/refseq_rna-pubmed.ttl is older than output/tsv/refseq_rna-pubmed.tsv -## Convert output/tsv/refseq_rna-pubmed.tsv => output/ttl/refseq_rna-pubmed.ttl -< 2024-11-16T12:44:51 refseq_rna-pubmed -togoid-config config/refseq_rna-pubmed convert -> 2024-11-16T12:45:39 refseq_rna-pubmed -### Update TTL for refseq_rna-refseq_protein if check_ttl_filesize false or check_ttl_timestamp true -# File output/ttl/refseq_rna-refseq_protein.ttl is older than output/tsv/refseq_rna-refseq_protein.tsv -## Convert output/tsv/refseq_rna-refseq_protein.tsv => output/ttl/refseq_rna-refseq_protein.ttl -< 2024-11-16T12:45:39 refseq_rna-refseq_protein -togoid-config config/refseq_rna-refseq_protein convert -> 2024-11-16T12:59:20 refseq_rna-refseq_protein -### Update TTL for refseq_rna-taxonomy if check_ttl_filesize false or check_ttl_timestamp true -# File output/ttl/refseq_rna-taxonomy.ttl is older than output/tsv/refseq_rna-taxonomy.tsv -## Convert output/tsv/refseq_rna-taxonomy.tsv => output/ttl/refseq_rna-taxonomy.ttl -< 2024-11-16T12:59:20 refseq_rna-taxonomy -togoid-config config/refseq_rna-taxonomy convert -> 2024-11-16T13:10:43 refseq_rna-taxonomy +> 2024-11-23T05:35:22 refseq_protein-uniprot +### Update TTL for refseq_rna-dbsnp if check_ttl_filesize false or check_ttl_timestamp false +# File output/ttl/refseq_rna-dbsnp.ttl is newer than output/tsv/refseq_rna-dbsnp.tsv +# => Preserving output/ttl/refseq_rna-dbsnp.ttl +### Update TTL for refseq_rna-hgnc if check_ttl_filesize false or check_ttl_timestamp false +# File output/ttl/refseq_rna-hgnc.ttl is newer than output/tsv/refseq_rna-hgnc.tsv +# => Preserving output/ttl/refseq_rna-hgnc.ttl +### Update TTL for refseq_rna-ncbigene if check_ttl_filesize false or check_ttl_timestamp false +# File output/ttl/refseq_rna-ncbigene.ttl is newer than output/tsv/refseq_rna-ncbigene.tsv +# => Preserving output/ttl/refseq_rna-ncbigene.ttl +### Update TTL for refseq_rna-omim_gene if check_ttl_filesize false or check_ttl_timestamp false +# File output/ttl/refseq_rna-omim_gene.ttl is newer than output/tsv/refseq_rna-omim_gene.tsv +# => Preserving output/ttl/refseq_rna-omim_gene.ttl +### Update TTL for refseq_rna-pubmed if check_ttl_filesize false or check_ttl_timestamp false +# File output/ttl/refseq_rna-pubmed.ttl is newer than output/tsv/refseq_rna-pubmed.tsv +# => Preserving output/ttl/refseq_rna-pubmed.ttl +### Update TTL for refseq_rna-refseq_protein if check_ttl_filesize false or check_ttl_timestamp false +# File output/ttl/refseq_rna-refseq_protein.ttl is newer than output/tsv/refseq_rna-refseq_protein.tsv +# => Preserving output/ttl/refseq_rna-refseq_protein.ttl +### Update TTL for refseq_rna-taxonomy if check_ttl_filesize false or check_ttl_timestamp false +# File output/ttl/refseq_rna-taxonomy.ttl is newer than output/tsv/refseq_rna-taxonomy.tsv +# => Preserving output/ttl/refseq_rna-taxonomy.ttl ### Update TTL for rhea-chebi if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/rhea-chebi.ttl is newer than output/tsv/rhea-chebi.tsv # => Preserving output/ttl/rhea-chebi.ttl @@ -6715,189 +6759,189 @@ togoid-config config/refseq_rna-taxonomy convert ### Update TTL for sra_accession-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-bioproject.ttl is older than output/tsv/sra_accession-bioproject.tsv ## Convert output/tsv/sra_accession-bioproject.tsv => output/ttl/sra_accession-bioproject.ttl -< 2024-11-16T13:10:43 sra_accession-bioproject +< 2024-11-23T05:35:22 sra_accession-bioproject togoid-config config/sra_accession-bioproject convert -> 2024-11-16T13:10:47 sra_accession-bioproject +> 2024-11-23T05:35:28 sra_accession-bioproject ### Update TTL for sra_accession-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-biosample.ttl is older than output/tsv/sra_accession-biosample.tsv ## Convert output/tsv/sra_accession-biosample.tsv => output/ttl/sra_accession-biosample.ttl -< 2024-11-16T13:10:47 sra_accession-biosample +< 2024-11-23T05:35:28 sra_accession-biosample togoid-config config/sra_accession-biosample convert -> 2024-11-16T13:16:09 sra_accession-biosample +> 2024-11-23T05:40:57 sra_accession-biosample ### Update TTL for sra_accession-sra_analysis if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_analysis.ttl is older than output/tsv/sra_accession-sra_analysis.tsv ## Convert output/tsv/sra_accession-sra_analysis.tsv => output/ttl/sra_accession-sra_analysis.ttl -< 2024-11-16T13:16:09 sra_accession-sra_analysis +< 2024-11-23T05:40:57 sra_accession-sra_analysis togoid-config config/sra_accession-sra_analysis convert -> 2024-11-16T13:16:12 sra_accession-sra_analysis +> 2024-11-23T05:40:59 sra_accession-sra_analysis ### Update TTL for sra_accession-sra_experiment if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_experiment.ttl is older than output/tsv/sra_accession-sra_experiment.tsv ## Convert output/tsv/sra_accession-sra_experiment.tsv => output/ttl/sra_accession-sra_experiment.ttl -< 2024-11-16T13:16:12 sra_accession-sra_experiment +< 2024-11-23T05:40:59 sra_accession-sra_experiment togoid-config config/sra_accession-sra_experiment convert -> 2024-11-16T13:22:30 sra_accession-sra_experiment +> 2024-11-23T05:47:18 sra_accession-sra_experiment ### Update TTL for sra_accession-sra_project if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_project.ttl is older than output/tsv/sra_accession-sra_project.tsv ## Convert output/tsv/sra_accession-sra_project.tsv => output/ttl/sra_accession-sra_project.ttl -< 2024-11-16T13:22:30 sra_accession-sra_project +< 2024-11-23T05:47:18 sra_accession-sra_project togoid-config config/sra_accession-sra_project convert -> 2024-11-16T13:22:35 sra_accession-sra_project +> 2024-11-23T05:47:23 sra_accession-sra_project ### Update TTL for sra_accession-sra_run if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_run.ttl is older than output/tsv/sra_accession-sra_run.tsv ## Convert output/tsv/sra_accession-sra_run.tsv => output/ttl/sra_accession-sra_run.ttl -< 2024-11-16T13:22:35 sra_accession-sra_run +< 2024-11-23T05:47:23 sra_accession-sra_run togoid-config config/sra_accession-sra_run convert -> 2024-11-16T13:29:02 sra_accession-sra_run +> 2024-11-23T05:53:38 sra_accession-sra_run ### Update TTL for sra_accession-sra_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_sample.ttl is older than output/tsv/sra_accession-sra_sample.tsv ## Convert output/tsv/sra_accession-sra_sample.tsv => output/ttl/sra_accession-sra_sample.ttl -< 2024-11-16T13:29:02 sra_accession-sra_sample +< 2024-11-23T05:53:38 sra_accession-sra_sample togoid-config config/sra_accession-sra_sample convert -> 2024-11-16T13:33:51 sra_accession-sra_sample +> 2024-11-23T05:58:35 sra_accession-sra_sample ### Update TTL for sra_experiment-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-bioproject.ttl is older than output/tsv/sra_experiment-bioproject.tsv ## Convert output/tsv/sra_experiment-bioproject.tsv => output/ttl/sra_experiment-bioproject.ttl -< 2024-11-16T13:33:51 sra_experiment-bioproject +< 2024-11-23T05:58:35 sra_experiment-bioproject togoid-config config/sra_experiment-bioproject convert -> 2024-11-16T13:39:13 sra_experiment-bioproject +> 2024-11-23T06:04:01 sra_experiment-bioproject ### Update TTL for sra_experiment-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-biosample.ttl is older than output/tsv/sra_experiment-biosample.tsv ## Convert output/tsv/sra_experiment-biosample.tsv => output/ttl/sra_experiment-biosample.ttl -< 2024-11-16T13:39:13 sra_experiment-biosample +< 2024-11-23T06:04:01 sra_experiment-biosample togoid-config config/sra_experiment-biosample convert -> 2024-11-16T13:44:28 sra_experiment-biosample +> 2024-11-23T06:09:18 sra_experiment-biosample ### Update TTL for sra_experiment-sra_project if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-sra_project.ttl is older than output/tsv/sra_experiment-sra_project.tsv ## Convert output/tsv/sra_experiment-sra_project.tsv => output/ttl/sra_experiment-sra_project.ttl -< 2024-11-16T13:44:28 sra_experiment-sra_project +< 2024-11-23T06:09:18 sra_experiment-sra_project togoid-config config/sra_experiment-sra_project convert -> 2024-11-16T13:49:49 sra_experiment-sra_project +> 2024-11-23T06:14:39 sra_experiment-sra_project ### Update TTL for sra_experiment-sra_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-sra_sample.ttl is older than output/tsv/sra_experiment-sra_sample.tsv ## Convert output/tsv/sra_experiment-sra_sample.tsv => output/ttl/sra_experiment-sra_sample.ttl -< 2024-11-16T13:49:49 sra_experiment-sra_sample +< 2024-11-23T06:14:39 sra_experiment-sra_sample togoid-config config/sra_experiment-sra_sample convert -> 2024-11-16T13:55:32 sra_experiment-sra_sample +> 2024-11-23T06:20:15 sra_experiment-sra_sample ### Update TTL for sra_project-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_project-bioproject.ttl is older than output/tsv/sra_project-bioproject.tsv ## Convert output/tsv/sra_project-bioproject.tsv => output/ttl/sra_project-bioproject.ttl -< 2024-11-16T13:55:32 sra_project-bioproject +< 2024-11-23T06:20:15 sra_project-bioproject togoid-config config/sra_project-bioproject convert -> 2024-11-16T13:55:36 sra_project-bioproject +> 2024-11-23T06:20:19 sra_project-bioproject ### Update TTL for sra_run-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-bioproject.ttl is older than output/tsv/sra_run-bioproject.tsv ## Convert output/tsv/sra_run-bioproject.tsv => output/ttl/sra_run-bioproject.ttl -< 2024-11-16T13:55:36 sra_run-bioproject +< 2024-11-23T06:20:19 sra_run-bioproject togoid-config config/sra_run-bioproject convert -> 2024-11-16T14:00:24 sra_run-bioproject +> 2024-11-23T06:25:10 sra_run-bioproject ### Update TTL for sra_run-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-biosample.ttl is older than output/tsv/sra_run-biosample.tsv ## Convert output/tsv/sra_run-biosample.tsv => output/ttl/sra_run-biosample.ttl -< 2024-11-16T14:00:24 sra_run-biosample +< 2024-11-23T06:25:10 sra_run-biosample togoid-config config/sra_run-biosample convert -> 2024-11-16T14:05:27 sra_run-biosample +> 2024-11-23T06:30:23 sra_run-biosample ### Update TTL for sra_run-sra_experiment if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-sra_experiment.ttl is older than output/tsv/sra_run-sra_experiment.tsv ## Convert output/tsv/sra_run-sra_experiment.tsv => output/ttl/sra_run-sra_experiment.ttl -< 2024-11-16T14:05:27 sra_run-sra_experiment +< 2024-11-23T06:30:23 sra_run-sra_experiment togoid-config config/sra_run-sra_experiment convert -> 2024-11-16T14:11:11 sra_run-sra_experiment +> 2024-11-23T06:36:20 sra_run-sra_experiment ### Update TTL for sra_run-sra_project if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-sra_project.ttl is older than output/tsv/sra_run-sra_project.tsv ## Convert output/tsv/sra_run-sra_project.tsv => output/ttl/sra_run-sra_project.ttl -< 2024-11-16T14:11:11 sra_run-sra_project +< 2024-11-23T06:36:20 sra_run-sra_project togoid-config config/sra_run-sra_project convert -> 2024-11-16T14:15:54 sra_run-sra_project +> 2024-11-23T06:41:04 sra_run-sra_project ### Update TTL for sra_run-sra_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-sra_sample.ttl is older than output/tsv/sra_run-sra_sample.tsv ## Convert output/tsv/sra_run-sra_sample.tsv => output/ttl/sra_run-sra_sample.ttl -< 2024-11-16T14:15:54 sra_run-sra_sample +< 2024-11-23T06:41:04 sra_run-sra_sample togoid-config config/sra_run-sra_sample convert -> 2024-11-16T14:21:29 sra_run-sra_sample +> 2024-11-23T06:46:35 sra_run-sra_sample ### Update TTL for sra_sample-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_sample-biosample.ttl is older than output/tsv/sra_sample-biosample.tsv ## Convert output/tsv/sra_sample-biosample.tsv => output/ttl/sra_sample-biosample.ttl -< 2024-11-16T14:21:29 sra_sample-biosample +< 2024-11-23T06:46:35 sra_sample-biosample togoid-config config/sra_sample-biosample convert -> 2024-11-16T14:26:44 sra_sample-biosample +> 2024-11-23T06:51:36 sra_sample-biosample ### Update TTL for swisslipids-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-chebi.ttl is older than output/tsv/swisslipids-chebi.tsv ## Convert output/tsv/swisslipids-chebi.tsv => output/ttl/swisslipids-chebi.ttl -< 2024-11-16T14:26:44 swisslipids-chebi +< 2024-11-23T06:51:36 swisslipids-chebi togoid-config config/swisslipids-chebi convert -> 2024-11-16T14:26:44 swisslipids-chebi +> 2024-11-23T06:51:37 swisslipids-chebi ### Update TTL for swisslipids-hmdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-hmdb.ttl is older than output/tsv/swisslipids-hmdb.tsv ## Convert output/tsv/swisslipids-hmdb.tsv => output/ttl/swisslipids-hmdb.ttl -< 2024-11-16T14:26:44 swisslipids-hmdb +< 2024-11-23T06:51:37 swisslipids-hmdb togoid-config config/swisslipids-hmdb convert -> 2024-11-16T14:26:45 swisslipids-hmdb +> 2024-11-23T06:51:38 swisslipids-hmdb ### Update TTL for swisslipids-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-inchi_key.ttl is older than output/tsv/swisslipids-inchi_key.tsv ## Convert output/tsv/swisslipids-inchi_key.tsv => output/ttl/swisslipids-inchi_key.ttl -< 2024-11-16T14:26:45 swisslipids-inchi_key +< 2024-11-23T06:51:38 swisslipids-inchi_key togoid-config config/swisslipids-inchi_key convert -> 2024-11-16T14:26:50 swisslipids-inchi_key +> 2024-11-23T06:51:48 swisslipids-inchi_key ### Update TTL for taxonomy-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/taxonomy-pubmed.ttl is older than output/tsv/taxonomy-pubmed.tsv ## Convert output/tsv/taxonomy-pubmed.tsv => output/ttl/taxonomy-pubmed.ttl -< 2024-11-16T14:26:50 taxonomy-pubmed +< 2024-11-23T06:51:48 taxonomy-pubmed togoid-config config/taxonomy-pubmed convert -> 2024-11-16T14:26:51 taxonomy-pubmed +> 2024-11-23T06:51:49 taxonomy-pubmed ### Update TTL for togovar-clinvar if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-clinvar.ttl is older than output/tsv/togovar-clinvar.tsv ## Convert output/tsv/togovar-clinvar.tsv => output/ttl/togovar-clinvar.ttl -< 2024-11-16T14:26:51 togovar-clinvar +< 2024-11-23T06:51:49 togovar-clinvar togoid-config config/togovar-clinvar convert -> 2024-11-16T14:26:57 togovar-clinvar +> 2024-11-23T06:51:58 togovar-clinvar ### Update TTL for togovar-dbsnp if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-dbsnp.ttl is older than output/tsv/togovar-dbsnp.tsv ## Convert output/tsv/togovar-dbsnp.tsv => output/ttl/togovar-dbsnp.ttl -< 2024-11-16T14:26:57 togovar-dbsnp +< 2024-11-23T06:51:58 togovar-dbsnp togoid-config config/togovar-dbsnp convert -> 2024-11-16T14:39:55 togovar-dbsnp +> 2024-11-23T07:10:59 togovar-dbsnp ### Update TTL for togovar-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-ensembl_gene.ttl is older than output/tsv/togovar-ensembl_gene.tsv ## Convert output/tsv/togovar-ensembl_gene.tsv => output/ttl/togovar-ensembl_gene.ttl -< 2024-11-16T14:39:55 togovar-ensembl_gene +< 2024-11-23T07:10:59 togovar-ensembl_gene togoid-config config/togovar-ensembl_gene convert -> 2024-11-16T14:57:31 togovar-ensembl_gene +> 2024-11-23T07:28:26 togovar-ensembl_gene ### Update TTL for togovar-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-ensembl_transcript.ttl is older than output/tsv/togovar-ensembl_transcript.tsv ## Convert output/tsv/togovar-ensembl_transcript.tsv => output/ttl/togovar-ensembl_transcript.ttl -< 2024-11-16T14:57:31 togovar-ensembl_transcript +< 2024-11-23T07:28:26 togovar-ensembl_transcript togoid-config config/togovar-ensembl_transcript convert -> 2024-11-16T17:35:26 togovar-ensembl_transcript +> 2024-11-23T09:59:56 togovar-ensembl_transcript ### Update TTL for togovar-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-hgnc.ttl is older than output/tsv/togovar-hgnc.tsv ## Convert output/tsv/togovar-hgnc.tsv => output/ttl/togovar-hgnc.ttl -< 2024-11-16T17:35:26 togovar-hgnc +< 2024-11-23T09:59:56 togovar-hgnc togoid-config config/togovar-hgnc convert -> 2024-11-16T17:44:32 togovar-hgnc +> 2024-11-23T10:08:53 togovar-hgnc ### Update TTL for togovar-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-ncbigene.ttl is older than output/tsv/togovar-ncbigene.tsv ## Convert output/tsv/togovar-ncbigene.tsv => output/ttl/togovar-ncbigene.ttl -< 2024-11-16T17:44:32 togovar-ncbigene +< 2024-11-23T10:08:53 togovar-ncbigene togoid-config config/togovar-ncbigene convert -> 2024-11-16T17:53:44 togovar-ncbigene +> 2024-11-23T10:18:00 togovar-ncbigene ### Update TTL for togovar-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-pubmed.ttl is older than output/tsv/togovar-pubmed.tsv ## Convert output/tsv/togovar-pubmed.tsv => output/ttl/togovar-pubmed.ttl -< 2024-11-16T17:53:44 togovar-pubmed +< 2024-11-23T10:18:00 togovar-pubmed togoid-config config/togovar-pubmed convert -> 2024-11-16T17:53:50 togovar-pubmed +> 2024-11-23T10:18:14 togovar-pubmed ### Update TTL for togovar-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-refseq_rna.ttl is older than output/tsv/togovar-refseq_rna.tsv ## Convert output/tsv/togovar-refseq_rna.tsv => output/ttl/togovar-refseq_rna.ttl -< 2024-11-16T17:53:50 togovar-refseq_rna +< 2024-11-23T10:18:14 togovar-refseq_rna togoid-config config/togovar-refseq_rna convert -> 2024-11-16T18:40:16 togovar-refseq_rna +> 2024-11-23T11:05:21 togovar-refseq_rna ### Update TTL for uberon-ncit_tissue if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uberon-ncit_tissue.ttl is older than output/tsv/uberon-ncit_tissue.tsv ## Convert output/tsv/uberon-ncit_tissue.tsv => output/ttl/uberon-ncit_tissue.ttl -< 2024-11-16T18:40:16 uberon-ncit_tissue +< 2024-11-23T11:05:21 uberon-ncit_tissue togoid-config config/uberon-ncit_tissue convert -> 2024-11-16T18:40:16 uberon-ncit_tissue +> 2024-11-23T11:05:22 uberon-ncit_tissue ### Update TTL for uniprot-chembl_target if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/uniprot-chembl_target.ttl is newer than output/tsv/uniprot-chembl_target.tsv # => Preserving output/ttl/uniprot-chembl_target.ttl @@ -6961,51 +7005,51 @@ togoid-config config/uberon-ncit_tissue convert ### Update TTL for uniprot_reference_proteome-assembly_insdc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uniprot_reference_proteome-assembly_insdc.ttl is older than output/tsv/uniprot_reference_proteome-assembly_insdc.tsv ## Convert output/tsv/uniprot_reference_proteome-assembly_insdc.tsv => output/ttl/uniprot_reference_proteome-assembly_insdc.ttl -< 2024-11-16T18:40:16 uniprot_reference_proteome-assembly_insdc +< 2024-11-23T11:05:22 uniprot_reference_proteome-assembly_insdc togoid-config config/uniprot_reference_proteome-assembly_insdc convert -> 2024-11-16T18:40:22 uniprot_reference_proteome-assembly_insdc +> 2024-11-23T11:05:28 uniprot_reference_proteome-assembly_insdc ### Update TTL for uniprot_reference_proteome-assembly_refseq if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uniprot_reference_proteome-assembly_refseq.ttl is older than output/tsv/uniprot_reference_proteome-assembly_refseq.tsv ## Convert output/tsv/uniprot_reference_proteome-assembly_refseq.tsv => output/ttl/uniprot_reference_proteome-assembly_refseq.ttl -< 2024-11-16T18:40:22 uniprot_reference_proteome-assembly_refseq +< 2024-11-23T11:05:28 uniprot_reference_proteome-assembly_refseq togoid-config config/uniprot_reference_proteome-assembly_refseq convert -> 2024-11-16T18:40:22 uniprot_reference_proteome-assembly_refseq +> 2024-11-23T11:05:28 uniprot_reference_proteome-assembly_refseq ### Update TTL for uniprot_reference_proteome-taxonomy if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uniprot_reference_proteome-taxonomy.ttl is older than output/tsv/uniprot_reference_proteome-taxonomy.tsv ## Convert output/tsv/uniprot_reference_proteome-taxonomy.tsv => output/ttl/uniprot_reference_proteome-taxonomy.ttl -< 2024-11-16T18:40:22 uniprot_reference_proteome-taxonomy +< 2024-11-23T11:05:28 uniprot_reference_proteome-taxonomy togoid-config config/uniprot_reference_proteome-taxonomy convert -> 2024-11-16T18:40:28 uniprot_reference_proteome-taxonomy +> 2024-11-23T11:05:34 uniprot_reference_proteome-taxonomy ### Update TTL for wikipathways-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-chebi.ttl is older than output/tsv/wikipathways-chebi.tsv ## Convert output/tsv/wikipathways-chebi.tsv => output/ttl/wikipathways-chebi.ttl -< 2024-11-16T18:40:28 wikipathways-chebi +< 2024-11-23T11:05:34 wikipathways-chebi togoid-config config/wikipathways-chebi convert -> 2024-11-16T18:40:29 wikipathways-chebi +> 2024-11-23T11:05:34 wikipathways-chebi ### Update TTL for wikipathways-doid if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-doid.ttl is older than output/tsv/wikipathways-doid.tsv ## Convert output/tsv/wikipathways-doid.tsv => output/ttl/wikipathways-doid.ttl -< 2024-11-16T18:40:29 wikipathways-doid +< 2024-11-23T11:05:34 wikipathways-doid togoid-config config/wikipathways-doid convert -> 2024-11-16T18:40:29 wikipathways-doid +> 2024-11-23T11:05:34 wikipathways-doid ### Update TTL for wikipathways-hmdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-hmdb.ttl is older than output/tsv/wikipathways-hmdb.tsv ## Convert output/tsv/wikipathways-hmdb.tsv => output/ttl/wikipathways-hmdb.ttl -< 2024-11-16T18:40:29 wikipathways-hmdb +< 2024-11-23T11:05:35 wikipathways-hmdb togoid-config config/wikipathways-hmdb convert -> 2024-11-16T18:40:29 wikipathways-hmdb +> 2024-11-23T11:05:35 wikipathways-hmdb ### Update TTL for wikipathways-lipidmaps if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-lipidmaps.ttl is older than output/tsv/wikipathways-lipidmaps.tsv ## Convert output/tsv/wikipathways-lipidmaps.tsv => output/ttl/wikipathways-lipidmaps.ttl -< 2024-11-16T18:40:29 wikipathways-lipidmaps +< 2024-11-23T11:05:35 wikipathways-lipidmaps togoid-config config/wikipathways-lipidmaps convert -> 2024-11-16T18:40:29 wikipathways-lipidmaps +> 2024-11-23T11:05:35 wikipathways-lipidmaps ### Update TTL for wikipathways-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-ncbigene.ttl is older than output/tsv/wikipathways-ncbigene.tsv ## Convert output/tsv/wikipathways-ncbigene.tsv => output/ttl/wikipathways-ncbigene.ttl -< 2024-11-16T18:40:29 wikipathways-ncbigene +< 2024-11-23T11:05:35 wikipathways-ncbigene togoid-config config/wikipathways-ncbigene convert -> 2024-11-16T18:40:30 wikipathways-ncbigene +> 2024-11-23T11:05:35 wikipathways-ncbigene ### Update TTL for wikipathways-uniprot if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/wikipathways-uniprot.ttl is newer than output/tsv/wikipathways-uniprot.tsv # => Preserving output/ttl/wikipathways-uniprot.ttl @@ -7014,12 +7058,12 @@ Rule for TTL (output/ttl/bioproject-biosample.ttl) Investigating output/ttl/bioproject-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:01:20 +0900 +timestamp: 2024-11-23 01:21:40 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/bioproject-biosample.tsv (2024-11-16 03:12:18 +0900) -latest-prerequisite time: 2024-11-16 03:12:18 +0900 +--output/tsv/bioproject-biosample.tsv (2024-11-22 21:54:01 +0900) +latest-prerequisite time: 2024-11-22 21:54:01 +0900 ................................ Rule for TTL (output/ttl/bioproject-geo_series.ttl) @@ -7027,12 +7071,12 @@ Rule for TTL (output/ttl/bioproject-geo_series.ttl) Investigating output/ttl/bioproject-geo_series.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:01:22 +0900 +timestamp: 2024-11-23 01:21:45 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/bioproject-geo_series.tsv (2024-11-16 03:12:20 +0900) -latest-prerequisite time: 2024-11-16 03:12:20 +0900 +--output/tsv/bioproject-geo_series.tsv (2024-11-22 21:54:03 +0900) +latest-prerequisite time: 2024-11-22 21:54:03 +0900 ................................ Rule for TTL (output/ttl/bioproject-pubmed.ttl) @@ -7040,12 +7084,12 @@ Rule for TTL (output/ttl/bioproject-pubmed.ttl) Investigating output/ttl/bioproject-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:01:25 +0900 +timestamp: 2024-11-23 01:21:56 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/bioproject-pubmed.tsv (2024-11-16 03:12:22 +0900) -latest-prerequisite time: 2024-11-16 03:12:22 +0900 +--output/tsv/bioproject-pubmed.tsv (2024-11-22 21:54:04 +0900) +latest-prerequisite time: 2024-11-22 21:54:04 +0900 ................................ Rule for TTL (output/ttl/bioproject_umbrella-bioproject.ttl) @@ -7053,12 +7097,12 @@ Rule for TTL (output/ttl/bioproject_umbrella-bioproject.ttl) Investigating output/ttl/bioproject_umbrella-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:01:26 +0900 +timestamp: 2024-11-23 01:22:00 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/bioproject_umbrella-bioproject.tsv (2024-11-16 03:12:22 +0900) -latest-prerequisite time: 2024-11-16 03:12:22 +0900 +--output/tsv/bioproject_umbrella-bioproject.tsv (2024-11-22 21:54:05 +0900) +latest-prerequisite time: 2024-11-22 21:54:05 +0900 ................................ Rule for TTL (output/ttl/biosample-bioproject.ttl) @@ -7066,12 +7110,12 @@ Rule for TTL (output/ttl/biosample-bioproject.ttl) Investigating output/ttl/biosample-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:04:28 +0900 +timestamp: 2024-11-23 01:26:05 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/biosample-bioproject.tsv (2024-11-16 03:13:43 +0900) -latest-prerequisite time: 2024-11-16 03:13:43 +0900 +--output/tsv/biosample-bioproject.tsv (2024-11-22 21:55:22 +0900) +latest-prerequisite time: 2024-11-22 21:55:22 +0900 ................................ Rule for TTL (output/ttl/biosample-geo_sample.ttl) @@ -7079,12 +7123,12 @@ Rule for TTL (output/ttl/biosample-geo_sample.ttl) Investigating output/ttl/biosample-geo_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:05:52 +0900 +timestamp: 2024-11-23 01:27:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/biosample-geo_sample.tsv (2024-11-16 03:15:17 +0900) -latest-prerequisite time: 2024-11-16 03:15:17 +0900 +--output/tsv/biosample-geo_sample.tsv (2024-11-22 21:56:56 +0900) +latest-prerequisite time: 2024-11-22 21:56:56 +0900 ................................ Rule for TTL (output/ttl/cellosaurus-ncit_disease.ttl) @@ -7131,12 +7175,12 @@ Rule for TTL (output/ttl/clinvar-dbsnp.ttl) Investigating output/ttl/clinvar-dbsnp.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:07:45 +0900 +timestamp: 2024-11-23 01:29:57 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-dbsnp.tsv (2024-11-16 03:32:30 +0900) -latest-prerequisite time: 2024-11-16 03:32:30 +0900 +--output/tsv/clinvar-dbsnp.tsv (2024-11-22 22:14:12 +0900) +latest-prerequisite time: 2024-11-22 22:14:12 +0900 ................................ Rule for TTL (output/ttl/clinvar-hgnc.ttl) @@ -7144,12 +7188,12 @@ Rule for TTL (output/ttl/clinvar-hgnc.ttl) Investigating output/ttl/clinvar-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:08:09 +0900 +timestamp: 2024-11-23 01:30:30 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-hgnc.tsv (2024-11-16 03:33:23 +0900) -latest-prerequisite time: 2024-11-16 03:33:23 +0900 +--output/tsv/clinvar-hgnc.tsv (2024-11-22 22:15:05 +0900) +latest-prerequisite time: 2024-11-22 22:15:05 +0900 ................................ Rule for TTL (output/ttl/clinvar-medgen.ttl) @@ -7157,12 +7201,12 @@ Rule for TTL (output/ttl/clinvar-medgen.ttl) Investigating output/ttl/clinvar-medgen.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:08:41 +0900 +timestamp: 2024-11-23 01:31:15 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-medgen.tsv (2024-11-16 03:34:58 +0900) -latest-prerequisite time: 2024-11-16 03:34:58 +0900 +--output/tsv/clinvar-medgen.tsv (2024-11-22 22:16:39 +0900) +latest-prerequisite time: 2024-11-22 22:16:39 +0900 ................................ Rule for TTL (output/ttl/clinvar-mondo.ttl) @@ -7170,12 +7214,12 @@ Rule for TTL (output/ttl/clinvar-mondo.ttl) Investigating output/ttl/clinvar-mondo.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:08:56 +0900 +timestamp: 2024-11-23 01:31:38 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-mondo.tsv (2024-11-16 03:36:32 +0900) -latest-prerequisite time: 2024-11-16 03:36:32 +0900 +--output/tsv/clinvar-mondo.tsv (2024-11-22 22:18:09 +0900) +latest-prerequisite time: 2024-11-22 22:18:09 +0900 ................................ Rule for TTL (output/ttl/clinvar-ncbigene.ttl) @@ -7183,12 +7227,12 @@ Rule for TTL (output/ttl/clinvar-ncbigene.ttl) Investigating output/ttl/clinvar-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:09:18 +0900 +timestamp: 2024-11-23 01:32:08 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-ncbigene.tsv (2024-11-16 03:37:23 +0900) -latest-prerequisite time: 2024-11-16 03:37:23 +0900 +--output/tsv/clinvar-ncbigene.tsv (2024-11-22 22:19:01 +0900) +latest-prerequisite time: 2024-11-22 22:19:01 +0900 ................................ Rule for TTL (output/ttl/clinvar-omim_phenotype.ttl) @@ -7196,12 +7240,12 @@ Rule for TTL (output/ttl/clinvar-omim_phenotype.ttl) Investigating output/ttl/clinvar-omim_phenotype.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:09:31 +0900 +timestamp: 2024-11-23 01:32:26 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-omim_phenotype.tsv (2024-11-16 03:38:54 +0900) -latest-prerequisite time: 2024-11-16 03:38:54 +0900 +--output/tsv/clinvar-omim_phenotype.tsv (2024-11-22 22:20:30 +0900) +latest-prerequisite time: 2024-11-22 22:20:30 +0900 ................................ Rule for TTL (output/ttl/clinvar-orphanet_phenotype.ttl) @@ -7209,12 +7253,12 @@ Rule for TTL (output/ttl/clinvar-orphanet_phenotype.ttl) Investigating output/ttl/clinvar-orphanet_phenotype.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:09:45 +0900 +timestamp: 2024-11-23 01:32:45 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-orphanet_phenotype.tsv (2024-11-16 03:40:25 +0900) -latest-prerequisite time: 2024-11-16 03:40:25 +0900 +--output/tsv/clinvar-orphanet_phenotype.tsv (2024-11-22 22:21:59 +0900) +latest-prerequisite time: 2024-11-22 22:21:59 +0900 ................................ Rule for TTL (output/ttl/clinvar-uniprot.ttl) @@ -7222,12 +7266,12 @@ Rule for TTL (output/ttl/clinvar-uniprot.ttl) Investigating output/ttl/clinvar-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:09:46 +0900 +timestamp: 2024-11-23 01:32:46 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-uniprot.tsv (2024-11-16 03:41:16 +0900) -latest-prerequisite time: 2024-11-16 03:41:16 +0900 +--output/tsv/clinvar-uniprot.tsv (2024-11-22 22:22:49 +0900) +latest-prerequisite time: 2024-11-22 22:22:49 +0900 ................................ Rule for TTL (output/ttl/cog-insdc.ttl) @@ -7261,12 +7305,12 @@ Rule for TTL (output/ttl/ensembl_gene-affy_probeset.ttl) Investigating output/ttl/ensembl_gene-affy_probeset.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:09:47 +0900 +timestamp: 2024-11-23 01:32:49 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_gene-affy_probeset.tsv (2024-11-16 03:42:15 +0900) -latest-prerequisite time: 2024-11-16 03:42:15 +0900 +--output/tsv/ensembl_gene-affy_probeset.tsv (2024-11-22 22:23:38 +0900) +latest-prerequisite time: 2024-11-22 22:23:38 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ensembl_protein.ttl) @@ -7274,12 +7318,12 @@ Rule for TTL (output/ttl/ensembl_gene-ensembl_protein.ttl) Investigating output/ttl/ensembl_gene-ensembl_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:12:08 +0900 +timestamp: 2024-11-23 01:37:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_gene-ensembl_protein.tsv (2024-11-16 03:44:05 +0900) -latest-prerequisite time: 2024-11-16 03:44:05 +0900 +--output/tsv/ensembl_gene-ensembl_protein.tsv (2024-11-22 22:25:33 +0900) +latest-prerequisite time: 2024-11-22 22:25:33 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ensembl_transcript.ttl) @@ -7287,12 +7331,12 @@ Rule for TTL (output/ttl/ensembl_gene-ensembl_transcript.ttl) Investigating output/ttl/ensembl_gene-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:14:58 +0900 +timestamp: 2024-11-23 01:42:44 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_gene-ensembl_transcript.tsv (2024-11-16 03:46:11 +0900) -latest-prerequisite time: 2024-11-16 03:46:11 +0900 +--output/tsv/ensembl_gene-ensembl_transcript.tsv (2024-11-22 22:27:31 +0900) +latest-prerequisite time: 2024-11-22 22:27:31 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-hgnc.ttl) @@ -7300,12 +7344,12 @@ Rule for TTL (output/ttl/ensembl_gene-hgnc.ttl) Investigating output/ttl/ensembl_gene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:15:00 +0900 +timestamp: 2024-11-23 01:42:45 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_gene-hgnc.tsv (2024-11-16 03:46:11 +0900) -latest-prerequisite time: 2024-11-16 03:46:11 +0900 +--output/tsv/ensembl_gene-hgnc.tsv (2024-11-22 22:27:32 +0900) +latest-prerequisite time: 2024-11-22 22:27:32 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ncbigene.ttl) @@ -7313,12 +7357,12 @@ Rule for TTL (output/ttl/ensembl_gene-ncbigene.ttl) Investigating output/ttl/ensembl_gene-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:17:22 +0900 +timestamp: 2024-11-23 01:45:15 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_gene-ncbigene.tsv (2024-11-16 03:48:08 +0900) -latest-prerequisite time: 2024-11-16 03:48:08 +0900 +--output/tsv/ensembl_gene-ncbigene.tsv (2024-11-22 22:29:27 +0900) +latest-prerequisite time: 2024-11-22 22:29:27 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-uniprot.ttl) @@ -7326,12 +7370,12 @@ Rule for TTL (output/ttl/ensembl_gene-uniprot.ttl) Investigating output/ttl/ensembl_gene-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:18:12 +0900 +timestamp: 2024-11-23 01:46:09 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_gene-uniprot.tsv (2024-11-16 03:49:31 +0900) -latest-prerequisite time: 2024-11-16 03:49:31 +0900 +--output/tsv/ensembl_gene-uniprot.tsv (2024-11-22 22:30:48 +0900) +latest-prerequisite time: 2024-11-22 22:30:48 +0900 ................................ Rule for TTL (output/ttl/ensembl_protein-ensembl_transcript.ttl) @@ -7339,12 +7383,12 @@ Rule for TTL (output/ttl/ensembl_protein-ensembl_transcript.ttl) Investigating output/ttl/ensembl_protein-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:20:29 +0900 +timestamp: 2024-11-23 01:49:55 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_protein-ensembl_transcript.tsv (2024-11-16 03:51:26 +0900) -latest-prerequisite time: 2024-11-16 03:51:26 +0900 +--output/tsv/ensembl_protein-ensembl_transcript.tsv (2024-11-22 22:32:42 +0900) +latest-prerequisite time: 2024-11-22 22:32:42 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-affy_probeset.ttl) @@ -7352,12 +7396,12 @@ Rule for TTL (output/ttl/ensembl_transcript-affy_probeset.ttl) Investigating output/ttl/ensembl_transcript-affy_probeset.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:20:33 +0900 +timestamp: 2024-11-23 01:49:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_transcript-affy_probeset.tsv (2024-11-16 03:52:21 +0900) -latest-prerequisite time: 2024-11-16 03:52:21 +0900 +--output/tsv/ensembl_transcript-affy_probeset.tsv (2024-11-22 22:33:34 +0900) +latest-prerequisite time: 2024-11-22 22:33:34 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-go.ttl) @@ -7365,12 +7409,12 @@ Rule for TTL (output/ttl/ensembl_transcript-go.ttl) Investigating output/ttl/ensembl_transcript-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:33:22 +0900 +timestamp: 2024-11-23 02:03:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_transcript-go.tsv (2024-11-16 03:56:24 +0900) -latest-prerequisite time: 2024-11-16 03:56:24 +0900 +--output/tsv/ensembl_transcript-go.tsv (2024-11-22 22:37:25 +0900) +latest-prerequisite time: 2024-11-22 22:37:25 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-hgnc.ttl) @@ -7378,12 +7422,12 @@ Rule for TTL (output/ttl/ensembl_transcript-hgnc.ttl) Investigating output/ttl/ensembl_transcript-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:33:25 +0900 +timestamp: 2024-11-23 02:03:39 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_transcript-hgnc.tsv (2024-11-16 03:56:25 +0900) -latest-prerequisite time: 2024-11-16 03:56:25 +0900 +--output/tsv/ensembl_transcript-hgnc.tsv (2024-11-22 22:37:26 +0900) +latest-prerequisite time: 2024-11-22 22:37:26 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-refseq_rna.ttl) @@ -7391,12 +7435,12 @@ Rule for TTL (output/ttl/ensembl_transcript-refseq_rna.ttl) Investigating output/ttl/ensembl_transcript-refseq_rna.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:41:34 +0900 +timestamp: 2024-11-23 02:14:23 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_transcript-refseq_rna.tsv (2024-11-16 03:59:45 +0900) -latest-prerequisite time: 2024-11-16 03:59:45 +0900 +--output/tsv/ensembl_transcript-refseq_rna.tsv (2024-11-22 22:40:42 +0900) +latest-prerequisite time: 2024-11-22 22:40:42 +0900 ................................ Rule for TTL (output/ttl/glycomotif-glytoucan.ttl) @@ -7430,12 +7474,12 @@ Rule for TTL (output/ttl/glytoucan-ncbigene.ttl) Investigating output/ttl/glytoucan-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:41:36 +0900 +timestamp: 2024-11-23 02:14:26 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/glytoucan-ncbigene.tsv (2024-11-16 04:00:32 +0900) -latest-prerequisite time: 2024-11-16 04:00:32 +0900 +--output/tsv/glytoucan-ncbigene.tsv (2024-11-22 22:41:24 +0900) +latest-prerequisite time: 2024-11-22 22:41:24 +0900 ................................ Rule for TTL (output/ttl/glytoucan-uniprot.ttl) @@ -7443,12 +7487,12 @@ Rule for TTL (output/ttl/glytoucan-uniprot.ttl) Investigating output/ttl/glytoucan-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 07:41:37 +0900 +timestamp: 2024-11-23 02:14:27 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/glytoucan-uniprot.tsv (2024-11-16 04:00:33 +0900) -latest-prerequisite time: 2024-11-16 04:00:33 +0900 +--output/tsv/glytoucan-uniprot.tsv (2024-11-22 22:41:26 +0900) +latest-prerequisite time: 2024-11-22 22:41:26 +0900 ................................ Rule for TTL (output/ttl/hgnc-ccds.ttl) @@ -7469,12 +7513,12 @@ Rule for TTL (output/ttl/hgnc-ec.ttl) Investigating output/ttl/hgnc-ec.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-25 23:59:17 +0900 +timestamp: 2024-11-23 02:14:28 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-ec.tsv (2024-10-25 21:03:33 +0900) -latest-prerequisite time: 2024-10-25 21:03:33 +0900 +--output/tsv/hgnc-ec.tsv (2024-11-22 22:41:27 +0900) +latest-prerequisite time: 2024-11-22 22:41:27 +0900 ................................ Rule for TTL (output/ttl/hgnc-ensembl_gene.ttl) @@ -7482,12 +7526,12 @@ Rule for TTL (output/ttl/hgnc-ensembl_gene.ttl) Investigating output/ttl/hgnc-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-25 23:59:18 +0900 +timestamp: 2024-11-23 02:14:29 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-ensembl_gene.tsv (2024-10-25 21:03:34 +0900) -latest-prerequisite time: 2024-10-25 21:03:34 +0900 +--output/tsv/hgnc-ensembl_gene.tsv (2024-11-22 22:41:28 +0900) +latest-prerequisite time: 2024-11-22 22:41:28 +0900 ................................ Rule for TTL (output/ttl/hgnc-hgnc_symbol.ttl) @@ -7495,12 +7539,12 @@ Rule for TTL (output/ttl/hgnc-hgnc_symbol.ttl) Investigating output/ttl/hgnc-hgnc_symbol.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-25 23:59:18 +0900 +timestamp: 2024-11-23 02:14:30 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-hgnc_symbol.tsv (2024-10-25 21:03:34 +0900) -latest-prerequisite time: 2024-10-25 21:03:34 +0900 +--output/tsv/hgnc-hgnc_symbol.tsv (2024-11-22 22:41:28 +0900) +latest-prerequisite time: 2024-11-22 22:41:28 +0900 ................................ Rule for TTL (output/ttl/hgnc-insdc.ttl) @@ -7508,12 +7552,12 @@ Rule for TTL (output/ttl/hgnc-insdc.ttl) Investigating output/ttl/hgnc-insdc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-25 23:59:19 +0900 +timestamp: 2024-11-23 02:14:30 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-insdc.tsv (2024-10-25 21:03:35 +0900) -latest-prerequisite time: 2024-10-25 21:03:35 +0900 +--output/tsv/hgnc-insdc.tsv (2024-11-22 22:41:29 +0900) +latest-prerequisite time: 2024-11-22 22:41:29 +0900 ................................ Rule for TTL (output/ttl/hgnc-lrg.ttl) @@ -7521,12 +7565,12 @@ Rule for TTL (output/ttl/hgnc-lrg.ttl) Investigating output/ttl/hgnc-lrg.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-25 23:59:19 +0900 +timestamp: 2024-11-23 02:14:31 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-lrg.tsv (2024-10-25 21:03:35 +0900) -latest-prerequisite time: 2024-10-25 21:03:35 +0900 +--output/tsv/hgnc-lrg.tsv (2024-11-22 22:41:29 +0900) +latest-prerequisite time: 2024-11-22 22:41:29 +0900 ................................ Rule for TTL (output/ttl/hgnc-mgi_gene.ttl) @@ -7534,12 +7578,12 @@ Rule for TTL (output/ttl/hgnc-mgi_gene.ttl) Investigating output/ttl/hgnc-mgi_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-25 23:59:19 +0900 +timestamp: 2024-11-23 02:14:31 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-mgi_gene.tsv (2024-10-25 21:03:36 +0900) -latest-prerequisite time: 2024-10-25 21:03:36 +0900 +--output/tsv/hgnc-mgi_gene.tsv (2024-11-22 22:41:30 +0900) +latest-prerequisite time: 2024-11-22 22:41:30 +0900 ................................ Rule for TTL (output/ttl/hgnc-mirbase.ttl) @@ -7547,12 +7591,12 @@ Rule for TTL (output/ttl/hgnc-mirbase.ttl) Investigating output/ttl/hgnc-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-25 23:59:19 +0900 +timestamp: 2024-11-23 02:14:32 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-mirbase.tsv (2024-10-25 21:03:37 +0900) -latest-prerequisite time: 2024-10-25 21:03:37 +0900 +--output/tsv/hgnc-mirbase.tsv (2024-11-22 22:41:30 +0900) +latest-prerequisite time: 2024-11-22 22:41:30 +0900 ................................ Rule for TTL (output/ttl/hgnc-ncbigene.ttl) @@ -7560,12 +7604,12 @@ Rule for TTL (output/ttl/hgnc-ncbigene.ttl) Investigating output/ttl/hgnc-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-25 23:59:20 +0900 +timestamp: 2024-11-23 02:14:32 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-ncbigene.tsv (2024-10-25 21:03:37 +0900) -latest-prerequisite time: 2024-10-25 21:03:37 +0900 +--output/tsv/hgnc-ncbigene.tsv (2024-11-22 22:41:31 +0900) +latest-prerequisite time: 2024-11-22 22:41:31 +0900 ................................ Rule for TTL (output/ttl/hgnc-omim_gene.ttl) @@ -7573,12 +7617,12 @@ Rule for TTL (output/ttl/hgnc-omim_gene.ttl) Investigating output/ttl/hgnc-omim_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-25 23:59:20 +0900 +timestamp: 2024-11-23 02:14:33 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-omim_gene.tsv (2024-10-25 21:03:38 +0900) -latest-prerequisite time: 2024-10-25 21:03:38 +0900 +--output/tsv/hgnc-omim_gene.tsv (2024-11-22 22:41:31 +0900) +latest-prerequisite time: 2024-11-22 22:41:31 +0900 ................................ Rule for TTL (output/ttl/hgnc-pubmed.ttl) @@ -7586,12 +7630,12 @@ Rule for TTL (output/ttl/hgnc-pubmed.ttl) Investigating output/ttl/hgnc-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-25 23:59:21 +0900 +timestamp: 2024-11-23 02:14:33 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-pubmed.tsv (2024-10-25 21:03:38 +0900) -latest-prerequisite time: 2024-10-25 21:03:38 +0900 +--output/tsv/hgnc-pubmed.tsv (2024-11-22 22:41:32 +0900) +latest-prerequisite time: 2024-11-22 22:41:32 +0900 ................................ Rule for TTL (output/ttl/hgnc-refseq_genomic.ttl) @@ -7599,12 +7643,12 @@ Rule for TTL (output/ttl/hgnc-refseq_genomic.ttl) Investigating output/ttl/hgnc-refseq_genomic.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-25 23:59:21 +0900 +timestamp: 2024-11-23 02:14:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-refseq_genomic.tsv (2024-10-25 21:03:39 +0900) -latest-prerequisite time: 2024-10-25 21:03:39 +0900 +--output/tsv/hgnc-refseq_genomic.tsv (2024-11-22 22:41:33 +0900) +latest-prerequisite time: 2024-11-22 22:41:33 +0900 ................................ Rule for TTL (output/ttl/hgnc-refseq_rna.ttl) @@ -7612,12 +7656,12 @@ Rule for TTL (output/ttl/hgnc-refseq_rna.ttl) Investigating output/ttl/hgnc-refseq_rna.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-25 23:59:22 +0900 +timestamp: 2024-11-23 02:14:35 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-refseq_rna.tsv (2024-10-25 21:03:39 +0900) -latest-prerequisite time: 2024-10-25 21:03:39 +0900 +--output/tsv/hgnc-refseq_rna.tsv (2024-11-22 22:41:33 +0900) +latest-prerequisite time: 2024-11-22 22:41:33 +0900 ................................ Rule for TTL (output/ttl/hgnc-rgd.ttl) @@ -7625,12 +7669,12 @@ Rule for TTL (output/ttl/hgnc-rgd.ttl) Investigating output/ttl/hgnc-rgd.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-25 23:59:22 +0900 +timestamp: 2024-11-23 02:14:35 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-rgd.tsv (2024-10-25 21:03:40 +0900) -latest-prerequisite time: 2024-10-25 21:03:40 +0900 +--output/tsv/hgnc-rgd.tsv (2024-11-22 22:41:34 +0900) +latest-prerequisite time: 2024-11-22 22:41:34 +0900 ................................ Rule for TTL (output/ttl/hgnc-uniprot.ttl) @@ -7638,12 +7682,12 @@ Rule for TTL (output/ttl/hgnc-uniprot.ttl) Investigating output/ttl/hgnc-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-25 23:59:23 +0900 +timestamp: 2024-11-23 02:14:36 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-uniprot.tsv (2024-10-19 13:28:13 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/hgnc-uniprot.tsv (2024-11-22 22:41:34 +0900) +latest-prerequisite time: 2024-11-22 22:41:34 +0900 ................................ Rule for TTL (output/ttl/hmdb-chebi.ttl) @@ -7911,12 +7955,12 @@ Rule for TTL (output/ttl/mgi_gene-ensembl_gene.ttl) Investigating output/ttl/mgi_gene-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:30:40 +0900 +timestamp: 2024-11-23 03:03:53 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_gene-ensembl_gene.tsv (2024-11-16 04:02:48 +0900) -latest-prerequisite time: 2024-11-16 04:02:48 +0900 +--output/tsv/mgi_gene-ensembl_gene.tsv (2024-11-22 22:43:50 +0900) +latest-prerequisite time: 2024-11-22 22:43:50 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-hgnc.ttl) @@ -7924,12 +7968,12 @@ Rule for TTL (output/ttl/mgi_gene-hgnc.ttl) Investigating output/ttl/mgi_gene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:30:41 +0900 +timestamp: 2024-11-23 03:03:54 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_gene-hgnc.tsv (2024-11-16 04:02:48 +0900) -latest-prerequisite time: 2024-11-16 04:02:48 +0900 +--output/tsv/mgi_gene-hgnc.tsv (2024-11-22 22:43:51 +0900) +latest-prerequisite time: 2024-11-22 22:43:51 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-mgi_allele.ttl) @@ -7937,12 +7981,12 @@ Rule for TTL (output/ttl/mgi_gene-mgi_allele.ttl) Investigating output/ttl/mgi_gene-mgi_allele.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:30:42 +0900 +timestamp: 2024-11-23 03:03:55 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_gene-mgi_allele.tsv (2024-11-16 04:02:49 +0900) -latest-prerequisite time: 2024-11-16 04:02:49 +0900 +--output/tsv/mgi_gene-mgi_allele.tsv (2024-11-22 22:43:52 +0900) +latest-prerequisite time: 2024-11-22 22:43:52 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-ncbigene.ttl) @@ -7950,12 +7994,12 @@ Rule for TTL (output/ttl/mgi_gene-ncbigene.ttl) Investigating output/ttl/mgi_gene-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:30:43 +0900 +timestamp: 2024-11-23 03:03:56 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_gene-ncbigene.tsv (2024-11-16 04:02:50 +0900) -latest-prerequisite time: 2024-11-16 04:02:50 +0900 +--output/tsv/mgi_gene-ncbigene.tsv (2024-11-22 22:43:52 +0900) +latest-prerequisite time: 2024-11-22 22:43:52 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-uniprot.ttl) @@ -7963,12 +8007,12 @@ Rule for TTL (output/ttl/mgi_gene-uniprot.ttl) Investigating output/ttl/mgi_gene-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:30:44 +0900 +timestamp: 2024-11-23 03:03:57 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_gene-uniprot.tsv (2024-11-16 04:02:50 +0900) -latest-prerequisite time: 2024-11-16 04:02:50 +0900 +--output/tsv/mgi_gene-uniprot.tsv (2024-11-22 22:43:53 +0900) +latest-prerequisite time: 2024-11-22 22:43:53 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-doid.ttl) @@ -7976,12 +8020,12 @@ Rule for TTL (output/ttl/mgi_genotype-doid.ttl) Investigating output/ttl/mgi_genotype-doid.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:30:44 +0900 +timestamp: 2024-11-23 03:03:57 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_genotype-doid.tsv (2024-11-16 04:02:52 +0900) -latest-prerequisite time: 2024-11-16 04:02:52 +0900 +--output/tsv/mgi_genotype-doid.tsv (2024-11-22 22:43:55 +0900) +latest-prerequisite time: 2024-11-22 22:43:55 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-mgi_allele.ttl) @@ -7989,12 +8033,12 @@ Rule for TTL (output/ttl/mgi_genotype-mgi_allele.ttl) Investigating output/ttl/mgi_genotype-mgi_allele.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:30:45 +0900 +timestamp: 2024-11-23 03:03:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_genotype-mgi_allele.tsv (2024-11-16 04:02:53 +0900) -latest-prerequisite time: 2024-11-16 04:02:53 +0900 +--output/tsv/mgi_genotype-mgi_allele.tsv (2024-11-22 22:43:56 +0900) +latest-prerequisite time: 2024-11-22 22:43:56 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-mp.ttl) @@ -8002,12 +8046,12 @@ Rule for TTL (output/ttl/mgi_genotype-mp.ttl) Investigating output/ttl/mgi_genotype-mp.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:30:49 +0900 +timestamp: 2024-11-23 03:04:01 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_genotype-mp.tsv (2024-11-16 04:02:56 +0900) -latest-prerequisite time: 2024-11-16 04:02:56 +0900 +--output/tsv/mgi_genotype-mp.tsv (2024-11-22 22:43:58 +0900) +latest-prerequisite time: 2024-11-22 22:43:58 +0900 ................................ Rule for TTL (output/ttl/mondo-doid.ttl) @@ -8093,12 +8137,12 @@ Rule for TTL (output/ttl/ncbigene-ensembl_gene.ttl) Investigating output/ttl/ncbigene-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:32:30 +0900 +timestamp: 2024-11-23 03:05:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-ensembl_gene.tsv (2024-11-16 04:03:33 +0900) -latest-prerequisite time: 2024-11-16 04:03:33 +0900 +--output/tsv/ncbigene-ensembl_gene.tsv (2024-11-22 22:44:37 +0900) +latest-prerequisite time: 2024-11-22 22:44:37 +0900 ................................ Rule for TTL (output/ttl/ncbigene-ensembl_protein.ttl) @@ -8106,12 +8150,12 @@ Rule for TTL (output/ttl/ncbigene-ensembl_protein.ttl) Investigating output/ttl/ncbigene-ensembl_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:34:26 +0900 +timestamp: 2024-11-23 03:07:30 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-ensembl_protein.tsv (2024-11-16 04:04:50 +0900) -latest-prerequisite time: 2024-11-16 04:04:50 +0900 +--output/tsv/ncbigene-ensembl_protein.tsv (2024-11-22 22:45:47 +0900) +latest-prerequisite time: 2024-11-22 22:45:47 +0900 ................................ Rule for TTL (output/ttl/ncbigene-ensembl_transcript.ttl) @@ -8119,12 +8163,12 @@ Rule for TTL (output/ttl/ncbigene-ensembl_transcript.ttl) Investigating output/ttl/ncbigene-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:36:26 +0900 +timestamp: 2024-11-23 03:10:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-ensembl_transcript.tsv (2024-11-16 04:05:56 +0900) -latest-prerequisite time: 2024-11-16 04:05:56 +0900 +--output/tsv/ncbigene-ensembl_transcript.tsv (2024-11-22 22:46:50 +0900) +latest-prerequisite time: 2024-11-22 22:46:50 +0900 ................................ Rule for TTL (output/ttl/ncbigene-flybase_gene.ttl) @@ -8132,12 +8176,12 @@ Rule for TTL (output/ttl/ncbigene-flybase_gene.ttl) Investigating output/ttl/ncbigene-flybase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:36:28 +0900 +timestamp: 2024-11-23 03:10:12 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-flybase_gene.tsv (2024-11-16 04:07:24 +0900) -latest-prerequisite time: 2024-11-16 04:07:24 +0900 +--output/tsv/ncbigene-flybase_gene.tsv (2024-11-22 22:50:01 +0900) +latest-prerequisite time: 2024-11-22 22:50:01 +0900 ................................ Rule for TTL (output/ttl/ncbigene-go.ttl) @@ -8145,12 +8189,12 @@ Rule for TTL (output/ttl/ncbigene-go.ttl) Investigating output/ttl/ncbigene-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:54:03 +0900 +timestamp: 2024-11-23 03:27:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-go.tsv (2024-11-16 04:14:30 +0900) -latest-prerequisite time: 2024-11-16 04:14:30 +0900 +--output/tsv/ncbigene-go.tsv (2024-11-22 23:06:38 +0900) +latest-prerequisite time: 2024-11-22 23:06:38 +0900 ................................ Rule for TTL (output/ttl/ncbigene-hgnc.ttl) @@ -8158,12 +8202,12 @@ Rule for TTL (output/ttl/ncbigene-hgnc.ttl) Investigating output/ttl/ncbigene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:54:07 +0900 +timestamp: 2024-11-23 03:27:39 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-hgnc.tsv (2024-11-16 04:14:31 +0900) -latest-prerequisite time: 2024-11-16 04:14:31 +0900 +--output/tsv/ncbigene-hgnc.tsv (2024-11-22 23:06:40 +0900) +latest-prerequisite time: 2024-11-22 23:06:40 +0900 ................................ Rule for TTL (output/ttl/ncbigene-mgi_gene.ttl) @@ -8171,12 +8215,12 @@ Rule for TTL (output/ttl/ncbigene-mgi_gene.ttl) Investigating output/ttl/ncbigene-mgi_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:54:07 +0900 +timestamp: 2024-11-23 03:27:40 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-mgi_gene.tsv (2024-11-16 04:15:40 +0900) -latest-prerequisite time: 2024-11-16 04:15:40 +0900 +--output/tsv/ncbigene-mgi_gene.tsv (2024-11-22 23:07:52 +0900) +latest-prerequisite time: 2024-11-22 23:07:52 +0900 ................................ Rule for TTL (output/ttl/ncbigene-mirbase.ttl) @@ -8184,12 +8228,12 @@ Rule for TTL (output/ttl/ncbigene-mirbase.ttl) Investigating output/ttl/ncbigene-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:54:08 +0900 +timestamp: 2024-11-23 03:27:40 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-mirbase.tsv (2024-11-16 04:17:33 +0900) -latest-prerequisite time: 2024-11-16 04:17:33 +0900 +--output/tsv/ncbigene-mirbase.tsv (2024-11-22 23:09:45 +0900) +latest-prerequisite time: 2024-11-22 23:09:45 +0900 ................................ Rule for TTL (output/ttl/ncbigene-omim_gene.ttl) @@ -8197,12 +8241,12 @@ Rule for TTL (output/ttl/ncbigene-omim_gene.ttl) Investigating output/ttl/ncbigene-omim_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:54:08 +0900 +timestamp: 2024-11-23 03:27:41 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-omim_gene.tsv (2024-11-16 04:17:34 +0900) -latest-prerequisite time: 2024-11-16 04:17:34 +0900 +--output/tsv/ncbigene-omim_gene.tsv (2024-11-22 23:09:46 +0900) +latest-prerequisite time: 2024-11-22 23:09:46 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_genomic.ttl) @@ -8210,12 +8254,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_genomic.ttl) Investigating output/ttl/ncbigene-refseq_genomic.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 08:54:10 +0900 +timestamp: 2024-11-23 03:27:43 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-refseq_genomic.tsv (2024-11-16 04:22:11 +0900) -latest-prerequisite time: 2024-11-16 04:22:11 +0900 +--output/tsv/ncbigene-refseq_genomic.tsv (2024-11-22 23:14:22 +0900) +latest-prerequisite time: 2024-11-22 23:14:22 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_protein.ttl) @@ -8223,12 +8267,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_protein.ttl) Investigating output/ttl/ncbigene-refseq_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 09:07:42 +0900 +timestamp: 2024-11-23 03:41:05 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-refseq_protein.tsv (2024-11-16 04:27:11 +0900) -latest-prerequisite time: 2024-11-16 04:27:11 +0900 +--output/tsv/ncbigene-refseq_protein.tsv (2024-11-22 23:19:52 +0900) +latest-prerequisite time: 2024-11-22 23:19:52 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_rna.ttl) @@ -8236,12 +8280,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_rna.ttl) Investigating output/ttl/ncbigene-refseq_rna.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 09:19:07 +0900 +timestamp: 2024-11-23 03:52:25 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-refseq_rna.tsv (2024-11-16 04:31:33 +0900) -latest-prerequisite time: 2024-11-16 04:31:33 +0900 +--output/tsv/ncbigene-refseq_rna.tsv (2024-11-22 23:24:50 +0900) +latest-prerequisite time: 2024-11-22 23:24:50 +0900 ................................ Rule for TTL (output/ttl/ncbigene-rgd.ttl) @@ -8249,12 +8293,12 @@ Rule for TTL (output/ttl/ncbigene-rgd.ttl) Investigating output/ttl/ncbigene-rgd.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 09:19:09 +0900 +timestamp: 2024-11-23 03:52:29 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-rgd.tsv (2024-11-16 04:32:40 +0900) -latest-prerequisite time: 2024-11-16 04:32:40 +0900 +--output/tsv/ncbigene-rgd.tsv (2024-11-22 23:25:59 +0900) +latest-prerequisite time: 2024-11-22 23:25:59 +0900 ................................ Rule for TTL (output/ttl/ncbigene-sgd.ttl) @@ -8262,12 +8306,12 @@ Rule for TTL (output/ttl/ncbigene-sgd.ttl) Investigating output/ttl/ncbigene-sgd.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 09:19:09 +0900 +timestamp: 2024-11-23 03:52:30 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-sgd.tsv (2024-11-16 04:34:01 +0900) -latest-prerequisite time: 2024-11-16 04:34:01 +0900 +--output/tsv/ncbigene-sgd.tsv (2024-11-22 23:27:16 +0900) +latest-prerequisite time: 2024-11-22 23:27:16 +0900 ................................ Rule for TTL (output/ttl/ncbigene-tair.ttl) @@ -8275,12 +8319,12 @@ Rule for TTL (output/ttl/ncbigene-tair.ttl) Investigating output/ttl/ncbigene-tair.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 09:19:10 +0900 +timestamp: 2024-11-23 03:52:30 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-tair.tsv (2024-11-16 04:35:19 +0900) -latest-prerequisite time: 2024-11-16 04:35:19 +0900 +--output/tsv/ncbigene-tair.tsv (2024-11-22 23:28:35 +0900) +latest-prerequisite time: 2024-11-22 23:28:35 +0900 ................................ Rule for TTL (output/ttl/ncbigene-taxonomy.ttl) @@ -8288,12 +8332,12 @@ Rule for TTL (output/ttl/ncbigene-taxonomy.ttl) Investigating output/ttl/ncbigene-taxonomy.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 09:27:55 +0900 +timestamp: 2024-11-23 04:01:10 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-taxonomy.tsv (2024-11-16 04:36:08 +0900) -latest-prerequisite time: 2024-11-16 04:36:08 +0900 +--output/tsv/ncbigene-taxonomy.tsv (2024-11-22 23:29:24 +0900) +latest-prerequisite time: 2024-11-22 23:29:24 +0900 ................................ Rule for TTL (output/ttl/ncbigene-vgnc.ttl) @@ -8301,12 +8345,12 @@ Rule for TTL (output/ttl/ncbigene-vgnc.ttl) Investigating output/ttl/ncbigene-vgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 09:27:59 +0900 +timestamp: 2024-11-23 04:01:14 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-vgnc.tsv (2024-11-16 04:37:27 +0900) -latest-prerequisite time: 2024-11-16 04:37:27 +0900 +--output/tsv/ncbigene-vgnc.tsv (2024-11-22 23:30:42 +0900) +latest-prerequisite time: 2024-11-22 23:30:42 +0900 ................................ Rule for TTL (output/ttl/ncbigene-wormbase_gene.ttl) @@ -8314,12 +8358,12 @@ Rule for TTL (output/ttl/ncbigene-wormbase_gene.ttl) Investigating output/ttl/ncbigene-wormbase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 09:27:59 +0900 +timestamp: 2024-11-23 04:01:14 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-wormbase_gene.tsv (2024-11-16 04:38:44 +0900) -latest-prerequisite time: 2024-11-16 04:38:44 +0900 +--output/tsv/ncbigene-wormbase_gene.tsv (2024-11-22 23:32:00 +0900) +latest-prerequisite time: 2024-11-22 23:32:00 +0900 ................................ Rule for TTL (output/ttl/ncbigene-xenbase_gene.ttl) @@ -8327,12 +8371,12 @@ Rule for TTL (output/ttl/ncbigene-xenbase_gene.ttl) Investigating output/ttl/ncbigene-xenbase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 09:28:00 +0900 +timestamp: 2024-11-23 04:01:15 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-xenbase_gene.tsv (2024-11-16 04:40:01 +0900) -latest-prerequisite time: 2024-11-16 04:40:01 +0900 +--output/tsv/ncbigene-xenbase_gene.tsv (2024-11-22 23:33:19 +0900) +latest-prerequisite time: 2024-11-22 23:33:19 +0900 ................................ Rule for TTL (output/ttl/ncbigene-zfin_gene.ttl) @@ -8340,12 +8384,12 @@ Rule for TTL (output/ttl/ncbigene-zfin_gene.ttl) Investigating output/ttl/ncbigene-zfin_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 09:28:00 +0900 +timestamp: 2024-11-23 04:01:15 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-zfin_gene.tsv (2024-11-16 04:41:20 +0900) -latest-prerequisite time: 2024-11-16 04:41:20 +0900 +--output/tsv/ncbigene-zfin_gene.tsv (2024-11-22 23:34:37 +0900) +latest-prerequisite time: 2024-11-22 23:34:37 +0900 ................................ Rule for TTL (output/ttl/oma_protein-ensembl_gene.ttl) @@ -8405,12 +8449,12 @@ Rule for TTL (output/ttl/pmc-pubmed.ttl) Investigating output/ttl/pmc-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 09:29:40 +0900 +timestamp: 2024-11-23 04:02:59 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/pmc-pubmed.tsv (2024-11-16 04:47:23 +0900) -latest-prerequisite time: 2024-11-16 04:47:23 +0900 +--output/tsv/pmc-pubmed.tsv (2024-11-22 23:40:38 +0900) +latest-prerequisite time: 2024-11-22 23:40:38 +0900 ................................ Rule for TTL (output/ttl/prosite-prosite_prorule.ttl) @@ -8431,12 +8475,12 @@ Rule for TTL (output/ttl/reactome_pathway-chebi.ttl) Investigating output/ttl/reactome_pathway-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 10:12:55 +0900 +timestamp: 2024-11-23 04:45:15 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_pathway-chebi.tsv (2024-11-16 04:54:03 +0900) -latest-prerequisite time: 2024-11-16 04:54:03 +0900 +--output/tsv/reactome_pathway-chebi.tsv (2024-11-22 23:49:52 +0900) +latest-prerequisite time: 2024-11-22 23:49:52 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-go.ttl) @@ -8444,12 +8488,12 @@ Rule for TTL (output/ttl/reactome_pathway-go.ttl) Investigating output/ttl/reactome_pathway-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 10:12:56 +0900 +timestamp: 2024-11-23 04:45:16 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_pathway-go.tsv (2024-11-16 04:54:04 +0900) -latest-prerequisite time: 2024-11-16 04:54:04 +0900 +--output/tsv/reactome_pathway-go.tsv (2024-11-22 23:49:53 +0900) +latest-prerequisite time: 2024-11-22 23:49:53 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-iuphar_ligand.ttl) @@ -8457,12 +8501,12 @@ Rule for TTL (output/ttl/reactome_pathway-iuphar_ligand.ttl) Investigating output/ttl/reactome_pathway-iuphar_ligand.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 10:12:56 +0900 +timestamp: 2024-11-23 04:45:16 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_pathway-iuphar_ligand.tsv (2024-11-16 04:54:04 +0900) -latest-prerequisite time: 2024-11-16 04:54:04 +0900 +--output/tsv/reactome_pathway-iuphar_ligand.tsv (2024-11-22 23:49:53 +0900) +latest-prerequisite time: 2024-11-22 23:49:53 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-mirbase.ttl) @@ -8470,12 +8514,12 @@ Rule for TTL (output/ttl/reactome_pathway-mirbase.ttl) Investigating output/ttl/reactome_pathway-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 10:12:57 +0900 +timestamp: 2024-11-23 04:45:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_pathway-mirbase.tsv (2024-11-16 04:54:04 +0900) -latest-prerequisite time: 2024-11-16 04:54:04 +0900 +--output/tsv/reactome_pathway-mirbase.tsv (2024-11-22 23:49:53 +0900) +latest-prerequisite time: 2024-11-22 23:49:53 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-reactome_reaction.ttl) @@ -8483,12 +8527,12 @@ Rule for TTL (output/ttl/reactome_pathway-reactome_reaction.ttl) Investigating output/ttl/reactome_pathway-reactome_reaction.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 10:13:00 +0900 +timestamp: 2024-11-23 04:45:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_pathway-reactome_reaction.tsv (2024-11-16 04:54:05 +0900) -latest-prerequisite time: 2024-11-16 04:54:05 +0900 +--output/tsv/reactome_pathway-reactome_reaction.tsv (2024-11-22 23:49:54 +0900) +latest-prerequisite time: 2024-11-22 23:49:54 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-uniprot.ttl) @@ -8496,12 +8540,12 @@ Rule for TTL (output/ttl/reactome_pathway-uniprot.ttl) Investigating output/ttl/reactome_pathway-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 10:13:07 +0900 +timestamp: 2024-11-23 04:45:28 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_pathway-uniprot.tsv (2024-11-16 04:54:07 +0900) -latest-prerequisite time: 2024-11-16 04:54:07 +0900 +--output/tsv/reactome_pathway-uniprot.tsv (2024-11-22 23:49:56 +0900) +latest-prerequisite time: 2024-11-22 23:49:56 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-chebi.ttl) @@ -8509,12 +8553,12 @@ Rule for TTL (output/ttl/reactome_reaction-chebi.ttl) Investigating output/ttl/reactome_reaction-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 10:13:09 +0900 +timestamp: 2024-11-23 04:45:30 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_reaction-chebi.tsv (2024-11-16 04:54:08 +0900) -latest-prerequisite time: 2024-11-16 04:54:08 +0900 +--output/tsv/reactome_reaction-chebi.tsv (2024-11-22 23:49:56 +0900) +latest-prerequisite time: 2024-11-22 23:49:56 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-go.ttl) @@ -8522,12 +8566,12 @@ Rule for TTL (output/ttl/reactome_reaction-go.ttl) Investigating output/ttl/reactome_reaction-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 10:13:09 +0900 +timestamp: 2024-11-23 04:45:30 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_reaction-go.tsv (2024-11-16 04:54:08 +0900) -latest-prerequisite time: 2024-11-16 04:54:08 +0900 +--output/tsv/reactome_reaction-go.tsv (2024-11-22 23:49:57 +0900) +latest-prerequisite time: 2024-11-22 23:49:57 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-iuphar_ligand.ttl) @@ -8535,12 +8579,12 @@ Rule for TTL (output/ttl/reactome_reaction-iuphar_ligand.ttl) Investigating output/ttl/reactome_reaction-iuphar_ligand.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 10:13:10 +0900 +timestamp: 2024-11-23 04:45:30 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_reaction-iuphar_ligand.tsv (2024-11-16 04:54:09 +0900) -latest-prerequisite time: 2024-11-16 04:54:09 +0900 +--output/tsv/reactome_reaction-iuphar_ligand.tsv (2024-11-22 23:49:57 +0900) +latest-prerequisite time: 2024-11-22 23:49:57 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-mirbase.ttl) @@ -8548,12 +8592,12 @@ Rule for TTL (output/ttl/reactome_reaction-mirbase.ttl) Investigating output/ttl/reactome_reaction-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 10:13:10 +0900 +timestamp: 2024-11-23 04:45:31 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_reaction-mirbase.tsv (2024-11-16 04:54:09 +0900) -latest-prerequisite time: 2024-11-16 04:54:09 +0900 +--output/tsv/reactome_reaction-mirbase.tsv (2024-11-22 23:49:57 +0900) +latest-prerequisite time: 2024-11-22 23:49:57 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-uniprot.ttl) @@ -8561,12 +8605,12 @@ Rule for TTL (output/ttl/reactome_reaction-uniprot.ttl) Investigating output/ttl/reactome_reaction-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 10:13:16 +0900 +timestamp: 2024-11-23 04:45:36 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_reaction-uniprot.tsv (2024-11-16 04:54:11 +0900) -latest-prerequisite time: 2024-11-16 04:54:11 +0900 +--output/tsv/reactome_reaction-uniprot.tsv (2024-11-22 23:49:58 +0900) +latest-prerequisite time: 2024-11-22 23:49:58 +0900 ................................ Rule for TTL (output/ttl/refseq_protein-uniprot.ttl) @@ -8574,12 +8618,12 @@ Rule for TTL (output/ttl/refseq_protein-uniprot.ttl) Investigating output/ttl/refseq_protein-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 11:03:40 +0900 +timestamp: 2024-11-23 05:35:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/refseq_protein-uniprot.tsv (2024-11-16 05:01:00 +0900) -latest-prerequisite time: 2024-11-16 05:01:00 +0900 +--output/tsv/refseq_protein-uniprot.tsv (2024-11-22 23:56:25 +0900) +latest-prerequisite time: 2024-11-22 23:56:25 +0900 ................................ Rule for TTL (output/ttl/refseq_rna-dbsnp.ttl) @@ -8756,12 +8800,12 @@ Rule for TTL (output/ttl/sra_accession-bioproject.ttl) Investigating output/ttl/sra_accession-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 13:10:47 +0900 +timestamp: 2024-11-23 05:35:28 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_accession-bioproject.tsv (2024-11-16 05:44:29 +0900) -latest-prerequisite time: 2024-11-16 05:44:29 +0900 +--output/tsv/sra_accession-bioproject.tsv (2024-11-22 23:58:59 +0900) +latest-prerequisite time: 2024-11-22 23:58:59 +0900 ................................ Rule for TTL (output/ttl/sra_accession-biosample.ttl) @@ -8769,12 +8813,12 @@ Rule for TTL (output/ttl/sra_accession-biosample.ttl) Investigating output/ttl/sra_accession-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 13:16:08 +0900 +timestamp: 2024-11-23 05:40:56 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_accession-biosample.tsv (2024-11-16 05:52:53 +0900) -latest-prerequisite time: 2024-11-16 05:52:53 +0900 +--output/tsv/sra_accession-biosample.tsv (2024-11-23 00:07:17 +0900) +latest-prerequisite time: 2024-11-23 00:07:17 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_analysis.ttl) @@ -8782,12 +8826,12 @@ Rule for TTL (output/ttl/sra_accession-sra_analysis.ttl) Investigating output/ttl/sra_accession-sra_analysis.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 13:16:12 +0900 +timestamp: 2024-11-23 05:40:59 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_accession-sra_analysis.tsv (2024-11-16 05:54:04 +0900) -latest-prerequisite time: 2024-11-16 05:54:04 +0900 +--output/tsv/sra_accession-sra_analysis.tsv (2024-11-23 00:08:26 +0900) +latest-prerequisite time: 2024-11-23 00:08:26 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_experiment.ttl) @@ -8795,12 +8839,12 @@ Rule for TTL (output/ttl/sra_accession-sra_experiment.ttl) Investigating output/ttl/sra_accession-sra_experiment.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 13:22:29 +0900 +timestamp: 2024-11-23 05:47:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_accession-sra_experiment.tsv (2024-11-16 06:01:04 +0900) -latest-prerequisite time: 2024-11-16 06:01:04 +0900 +--output/tsv/sra_accession-sra_experiment.tsv (2024-11-23 00:15:19 +0900) +latest-prerequisite time: 2024-11-23 00:15:19 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_project.ttl) @@ -8808,12 +8852,12 @@ Rule for TTL (output/ttl/sra_accession-sra_project.ttl) Investigating output/ttl/sra_accession-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 13:22:35 +0900 +timestamp: 2024-11-23 05:47:23 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_accession-sra_project.tsv (2024-11-16 06:02:12 +0900) -latest-prerequisite time: 2024-11-16 06:02:12 +0900 +--output/tsv/sra_accession-sra_project.tsv (2024-11-23 00:16:28 +0900) +latest-prerequisite time: 2024-11-23 00:16:28 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_run.ttl) @@ -8821,12 +8865,12 @@ Rule for TTL (output/ttl/sra_accession-sra_run.ttl) Investigating output/ttl/sra_accession-sra_run.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 13:29:00 +0900 +timestamp: 2024-11-23 05:53:36 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_accession-sra_run.tsv (2024-11-16 06:10:05 +0900) -latest-prerequisite time: 2024-11-16 06:10:05 +0900 +--output/tsv/sra_accession-sra_run.tsv (2024-11-23 00:24:23 +0900) +latest-prerequisite time: 2024-11-23 00:24:23 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_sample.ttl) @@ -8834,12 +8878,12 @@ Rule for TTL (output/ttl/sra_accession-sra_sample.ttl) Investigating output/ttl/sra_accession-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 13:33:50 +0900 +timestamp: 2024-11-23 05:58:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_accession-sra_sample.tsv (2024-11-16 06:16:50 +0900) -latest-prerequisite time: 2024-11-16 06:16:50 +0900 +--output/tsv/sra_accession-sra_sample.tsv (2024-11-23 00:31:15 +0900) +latest-prerequisite time: 2024-11-23 00:31:15 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-bioproject.ttl) @@ -8847,12 +8891,12 @@ Rule for TTL (output/ttl/sra_experiment-bioproject.ttl) Investigating output/ttl/sra_experiment-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 13:39:12 +0900 +timestamp: 2024-11-23 06:04:01 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_experiment-bioproject.tsv (2024-11-16 06:20:32 +0900) -latest-prerequisite time: 2024-11-16 06:20:32 +0900 +--output/tsv/sra_experiment-bioproject.tsv (2024-11-23 00:35:19 +0900) +latest-prerequisite time: 2024-11-23 00:35:19 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-biosample.ttl) @@ -8860,12 +8904,12 @@ Rule for TTL (output/ttl/sra_experiment-biosample.ttl) Investigating output/ttl/sra_experiment-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 13:44:27 +0900 +timestamp: 2024-11-23 06:09:16 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_experiment-biosample.tsv (2024-11-16 06:24:06 +0900) -latest-prerequisite time: 2024-11-16 06:24:06 +0900 +--output/tsv/sra_experiment-biosample.tsv (2024-11-23 00:38:59 +0900) +latest-prerequisite time: 2024-11-23 00:38:59 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-sra_project.ttl) @@ -8873,12 +8917,12 @@ Rule for TTL (output/ttl/sra_experiment-sra_project.ttl) Investigating output/ttl/sra_experiment-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 13:49:48 +0900 +timestamp: 2024-11-23 06:14:38 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_experiment-sra_project.tsv (2024-11-16 06:27:07 +0900) -latest-prerequisite time: 2024-11-16 06:27:07 +0900 +--output/tsv/sra_experiment-sra_project.tsv (2024-11-23 00:42:04 +0900) +latest-prerequisite time: 2024-11-23 00:42:04 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-sra_sample.ttl) @@ -8886,12 +8930,12 @@ Rule for TTL (output/ttl/sra_experiment-sra_sample.ttl) Investigating output/ttl/sra_experiment-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 13:55:30 +0900 +timestamp: 2024-11-23 06:20:14 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_experiment-sra_sample.tsv (2024-11-16 06:30:03 +0900) -latest-prerequisite time: 2024-11-16 06:30:03 +0900 +--output/tsv/sra_experiment-sra_sample.tsv (2024-11-23 00:45:31 +0900) +latest-prerequisite time: 2024-11-23 00:45:31 +0900 ................................ Rule for TTL (output/ttl/sra_project-bioproject.ttl) @@ -8899,12 +8943,12 @@ Rule for TTL (output/ttl/sra_project-bioproject.ttl) Investigating output/ttl/sra_project-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 13:55:36 +0900 +timestamp: 2024-11-23 06:20:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_project-bioproject.tsv (2024-11-16 06:31:12 +0900) -latest-prerequisite time: 2024-11-16 06:31:12 +0900 +--output/tsv/sra_project-bioproject.tsv (2024-11-23 00:46:43 +0900) +latest-prerequisite time: 2024-11-23 00:46:43 +0900 ................................ Rule for TTL (output/ttl/sra_run-bioproject.ttl) @@ -8912,12 +8956,12 @@ Rule for TTL (output/ttl/sra_run-bioproject.ttl) Investigating output/ttl/sra_run-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 14:00:22 +0900 +timestamp: 2024-11-23 06:25:09 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_run-bioproject.tsv (2024-11-16 06:35:16 +0900) -latest-prerequisite time: 2024-11-16 06:35:16 +0900 +--output/tsv/sra_run-bioproject.tsv (2024-11-23 00:50:59 +0900) +latest-prerequisite time: 2024-11-23 00:50:59 +0900 ................................ Rule for TTL (output/ttl/sra_run-biosample.ttl) @@ -8925,12 +8969,12 @@ Rule for TTL (output/ttl/sra_run-biosample.ttl) Investigating output/ttl/sra_run-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 14:05:26 +0900 +timestamp: 2024-11-23 06:30:22 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_run-biosample.tsv (2024-11-16 06:39:14 +0900) -latest-prerequisite time: 2024-11-16 06:39:14 +0900 +--output/tsv/sra_run-biosample.tsv (2024-11-23 00:55:14 +0900) +latest-prerequisite time: 2024-11-23 00:55:14 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_experiment.ttl) @@ -8938,12 +8982,12 @@ Rule for TTL (output/ttl/sra_run-sra_experiment.ttl) Investigating output/ttl/sra_run-sra_experiment.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 14:11:09 +0900 +timestamp: 2024-11-23 06:36:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_run-sra_experiment.tsv (2024-11-16 06:42:21 +0900) -latest-prerequisite time: 2024-11-16 06:42:21 +0900 +--output/tsv/sra_run-sra_experiment.tsv (2024-11-23 00:58:31 +0900) +latest-prerequisite time: 2024-11-23 00:58:31 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_project.ttl) @@ -8951,12 +8995,12 @@ Rule for TTL (output/ttl/sra_run-sra_project.ttl) Investigating output/ttl/sra_run-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 14:15:51 +0900 +timestamp: 2024-11-23 06:41:02 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_run-sra_project.tsv (2024-11-16 06:45:38 +0900) -latest-prerequisite time: 2024-11-16 06:45:38 +0900 +--output/tsv/sra_run-sra_project.tsv (2024-11-23 01:02:11 +0900) +latest-prerequisite time: 2024-11-23 01:02:11 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_sample.ttl) @@ -8964,12 +9008,12 @@ Rule for TTL (output/ttl/sra_run-sra_sample.ttl) Investigating output/ttl/sra_run-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 14:21:27 +0900 +timestamp: 2024-11-23 06:46:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_run-sra_sample.tsv (2024-11-16 06:48:51 +0900) -latest-prerequisite time: 2024-11-16 06:48:51 +0900 +--output/tsv/sra_run-sra_sample.tsv (2024-11-23 01:05:36 +0900) +latest-prerequisite time: 2024-11-23 01:05:36 +0900 ................................ Rule for TTL (output/ttl/sra_sample-biosample.ttl) @@ -8977,12 +9021,12 @@ Rule for TTL (output/ttl/sra_sample-biosample.ttl) Investigating output/ttl/sra_sample-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 14:26:42 +0900 +timestamp: 2024-11-23 06:51:35 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_sample-biosample.tsv (2024-11-16 06:52:04 +0900) -latest-prerequisite time: 2024-11-16 06:52:04 +0900 +--output/tsv/sra_sample-biosample.tsv (2024-11-23 01:09:08 +0900) +latest-prerequisite time: 2024-11-23 01:09:08 +0900 ................................ Rule for TTL (output/ttl/swisslipids-chebi.ttl) @@ -8990,12 +9034,12 @@ Rule for TTL (output/ttl/swisslipids-chebi.ttl) Investigating output/ttl/swisslipids-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 14:26:44 +0900 +timestamp: 2024-11-23 06:51:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/swisslipids-chebi.tsv (2024-11-16 06:52:19 +0900) -latest-prerequisite time: 2024-11-16 06:52:19 +0900 +--output/tsv/swisslipids-chebi.tsv (2024-11-23 01:10:44 +0900) +latest-prerequisite time: 2024-11-23 01:10:44 +0900 ................................ Rule for TTL (output/ttl/swisslipids-hmdb.ttl) @@ -9003,12 +9047,12 @@ Rule for TTL (output/ttl/swisslipids-hmdb.ttl) Investigating output/ttl/swisslipids-hmdb.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 14:26:45 +0900 +timestamp: 2024-11-23 06:51:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/swisslipids-hmdb.tsv (2024-11-16 06:52:33 +0900) -latest-prerequisite time: 2024-11-16 06:52:33 +0900 +--output/tsv/swisslipids-hmdb.tsv (2024-11-23 01:10:57 +0900) +latest-prerequisite time: 2024-11-23 01:10:57 +0900 ................................ Rule for TTL (output/ttl/swisslipids-inchi_key.ttl) @@ -9016,12 +9060,12 @@ Rule for TTL (output/ttl/swisslipids-inchi_key.ttl) Investigating output/ttl/swisslipids-inchi_key.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 14:26:50 +0900 +timestamp: 2024-11-23 06:51:48 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/swisslipids-inchi_key.tsv (2024-11-16 06:52:45 +0900) -latest-prerequisite time: 2024-11-16 06:52:45 +0900 +--output/tsv/swisslipids-inchi_key.tsv (2024-11-23 01:11:09 +0900) +latest-prerequisite time: 2024-11-23 01:11:09 +0900 ................................ Rule for TTL (output/ttl/taxonomy-pubmed.ttl) @@ -9029,12 +9073,12 @@ Rule for TTL (output/ttl/taxonomy-pubmed.ttl) Investigating output/ttl/taxonomy-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 14:26:51 +0900 +timestamp: 2024-11-23 06:51:49 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/taxonomy-pubmed.tsv (2024-11-16 06:52:46 +0900) -latest-prerequisite time: 2024-11-16 06:52:46 +0900 +--output/tsv/taxonomy-pubmed.tsv (2024-11-23 01:11:10 +0900) +latest-prerequisite time: 2024-11-23 01:11:10 +0900 ................................ Rule for TTL (output/ttl/uniprot-chembl_target.ttl) @@ -9302,12 +9346,12 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_insdc.ttl) Investigating output/ttl/uniprot_reference_proteome-assembly_insdc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 18:40:22 +0900 +timestamp: 2024-11-23 11:05:28 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/uniprot_reference_proteome-assembly_insdc.tsv (2024-11-16 06:59:30 +0900) -latest-prerequisite time: 2024-11-16 06:59:30 +0900 +--output/tsv/uniprot_reference_proteome-assembly_insdc.tsv (2024-11-23 01:18:25 +0900) +latest-prerequisite time: 2024-11-23 01:18:25 +0900 ................................ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_refseq.ttl) @@ -9315,12 +9359,12 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_refseq.ttl) Investigating output/ttl/uniprot_reference_proteome-assembly_refseq.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 18:40:22 +0900 +timestamp: 2024-11-23 11:05:28 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/uniprot_reference_proteome-assembly_refseq.tsv (2024-11-16 06:59:30 +0900) -latest-prerequisite time: 2024-11-16 06:59:30 +0900 +--output/tsv/uniprot_reference_proteome-assembly_refseq.tsv (2024-11-23 01:18:26 +0900) +latest-prerequisite time: 2024-11-23 01:18:26 +0900 ................................ Rule for TTL (output/ttl/uniprot_reference_proteome-taxonomy.ttl) @@ -9328,12 +9372,12 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-taxonomy.ttl) Investigating output/ttl/uniprot_reference_proteome-taxonomy.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-16 18:40:28 +0900 +timestamp: 2024-11-23 11:05:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/uniprot_reference_proteome-taxonomy.tsv (2024-11-16 06:59:31 +0900) -latest-prerequisite time: 2024-11-16 06:59:31 +0900 +--output/tsv/uniprot_reference_proteome-taxonomy.tsv (2024-11-23 01:18:27 +0900) +latest-prerequisite time: 2024-11-23 01:18:27 +0900 ................................ Rule for TTL (output/ttl/wikipathways-uniprot.ttl) @@ -9351,40 +9395,40 @@ latest-prerequisite time: 2024-10-25 17:00:17 +0900 ### Update ID and Label TTL for atc if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/atc.ttl has no timestamp file -# File output/id-label/atc.ttl is created 7.397443118366239 days ago (will be updated when >5 days) +# File output/id-label/atc.ttl is created 6.6840846248398496 days ago (will be updated when >5 days) ## Update output/id-label/atc.ttl -< 2024-11-16T18:40:30 atc +< 2024-11-23T11:05:36 atc togoid-rdfize-id-label atc -> 2024-11-16T18:40:31 atc +> 2024-11-23T11:05:37 atc ### Update ID and Label TTL for bioproject if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/bioproject.ttl is older than input/bioproject/download.lock ## Update output/id-label/bioproject.ttl -< 2024-11-16T18:40:31 bioproject +< 2024-11-23T11:05:37 bioproject togoid-rdfize-id-label bioproject -> 2024-11-16T18:40:37 bioproject +> 2024-11-23T11:05:44 bioproject ### Update ID and Label TTL for biosample if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/biosample.ttl is older than input/biosample/download.lock ## Update output/id-label/biosample.ttl -< 2024-11-16T18:40:37 biosample +< 2024-11-23T11:05:44 biosample togoid-rdfize-id-label biosample -> 2024-11-16T18:44:53 biosample +> 2024-11-23T11:11:33 biosample ### Update ID and Label TTL for cellosaurus if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/cellosaurus.ttl is newer than input/cellosaurus/download.lock # => Preserving output/ttl/cellosaurus.ttl ### Update ID and Label TTL for ec if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/ec.ttl has no timestamp file -# File output/id-label/ec.ttl is created 7.397408352949479 days ago (will be updated when >5 days) +# File output/id-label/ec.ttl is created 6.68517864947949 days ago (will be updated when >5 days) ## Update output/id-label/ec.ttl -< 2024-11-16T18:44:53 ec +< 2024-11-23T11:11:33 ec togoid-rdfize-id-label ec -> 2024-11-16T18:44:54 ec +> 2024-11-23T11:11:34 ec ### Update ID and Label TTL for flybase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/flybase_gene.ttl has no timestamp file -# File output/id-label/flybase_gene.ttl is created 7.396478018870509 days ago (will be updated when >5 days) +# File output/id-label/flybase_gene.ttl is created 6.684237960557685 days ago (will be updated when >5 days) ## Update output/id-label/flybase_gene.ttl -< 2024-11-16T18:44:54 flybase_gene +< 2024-11-23T11:11:34 flybase_gene togoid-rdfize-id-label flybase_gene -> 2024-11-16T18:46:16 flybase_gene +> 2024-11-23T11:13:05 flybase_gene ### Update ID and Label TTL for hmdb if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/hmdb.ttl is newer than input/hmdb/download.lock # => Preserving output/ttl/hmdb.ttl @@ -9396,129 +9440,126 @@ togoid-rdfize-id-label flybase_gene # => Preserving output/ttl/interpro.ttl ### Update ID and Label TTL for mgi_allele if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_allele.ttl has no timestamp file -# File output/id-label/mgi_allele.ttl is created 7.3974114102854625 days ago (will be updated when >5 days) +# File output/id-label/mgi_allele.ttl is created 6.68527618508198 days ago (will be updated when >5 days) ## Update output/id-label/mgi_allele.ttl -< 2024-11-16T18:46:16 mgi_allele +< 2024-11-23T11:13:05 mgi_allele togoid-rdfize-id-label mgi_allele -> 2024-11-16T18:46:17 mgi_allele +> 2024-11-23T11:13:06 mgi_allele ### Update ID and Label TTL for mgi_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_gene.ttl is older than input/mgi_gene/download.lock ## Update output/id-label/mgi_gene.ttl -< 2024-11-16T18:46:17 mgi_gene +< 2024-11-23T11:13:06 mgi_gene togoid-rdfize-id-label mgi_gene -> 2024-11-16T18:46:21 mgi_gene +> 2024-11-23T11:13:10 mgi_gene ### Update ID and Label TTL for mgi_genotype if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_genotype.ttl is older than input/mgi_genotype/download.lock ## Update output/id-label/mgi_genotype.ttl -< 2024-11-16T18:46:21 mgi_genotype +< 2024-11-23T11:13:10 mgi_genotype togoid-rdfize-id-label mgi_genotype -> 2024-11-16T18:46:22 mgi_genotype +> 2024-11-23T11:13:11 mgi_genotype ### Update ID and Label TTL for mirbase if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mirbase.ttl has no timestamp file -# File output/id-label/mirbase.ttl is created 7.396131700183055 days ago (will be updated when >5 days) +# File output/id-label/mirbase.ttl is created 6.683935641951967 days ago (will be updated when >5 days) ## Update output/id-label/mirbase.ttl -< 2024-11-16T18:46:22 mirbase +< 2024-11-23T11:13:11 mirbase togoid-rdfize-id-label mirbase -> 2024-11-16T18:48:19 mirbase +> 2024-11-23T11:15:07 mirbase ### Update ID and Label TTL for pathbank if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pathbank.ttl has no timestamp file -# File output/id-label/pathbank.ttl is created 7.397472945331054 days ago (will be updated when >5 days) +# File output/id-label/pathbank.ttl is created 6.6852655086222335 days ago (will be updated when >5 days) ## Update output/id-label/pathbank.ttl -< 2024-11-16T18:48:19 pathbank +< 2024-11-23T11:15:07 pathbank togoid-rdfize-id-label pathbank -> 2024-11-16T18:48:20 pathbank +> 2024-11-23T11:15:07 pathbank ### Update ID and Label TTL for pfam if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pfam.ttl has no timestamp file -# File output/id-label/pfam.ttl is created 7.3974404526418285 days ago (will be updated when >5 days) +# File output/id-label/pfam.ttl is created 6.685231615483749 days ago (will be updated when >5 days) ## Update output/id-label/pfam.ttl -< 2024-11-16T18:48:20 pfam +< 2024-11-23T11:15:07 pfam togoid-rdfize-id-label pfam -> 2024-11-16T18:48:23 pfam +> 2024-11-23T11:15:12 pfam ### Update ID and Label TTL for prosite if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/prosite.ttl is newer than input/prosite/download.lock # => Preserving output/ttl/prosite.ttl ### Update ID and Label TTL for prosite_prorule if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/prosite_prorule.ttl has no timestamp file -# File output/id-label/prosite_prorule.ttl is created 7.397480986617165 days ago (will be updated when >5 days) +# File output/id-label/prosite_prorule.ttl is created 6.685285450259456 days ago (will be updated when >5 days) ## Update output/id-label/prosite_prorule.ttl -< 2024-11-16T18:48:23 prosite_prorule +< 2024-11-23T11:15:12 prosite_prorule togoid-rdfize-id-label prosite_prorule -> 2024-11-16T18:48:24 prosite_prorule +> 2024-11-23T11:15:13 prosite_prorule ### Update ID and Label TTL for pubchem_pathway if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pubchem_pathway.ttl has no timestamp file -# File output/id-label/pubchem_pathway.ttl is created 7.397472228994133 days ago (will be updated when >5 days) +# File output/id-label/pubchem_pathway.ttl is created 6.6852776647948495 days ago (will be updated when >5 days) ## Update output/id-label/pubchem_pathway.ttl -< 2024-11-16T18:48:24 pubchem_pathway +< 2024-11-23T11:15:13 pubchem_pathway togoid-rdfize-id-label pubchem_pathway -> 2024-11-16T18:48:25 pubchem_pathway -### Update ID and Label TTL for refseq_rna if check_id_label_filesize false or check_id_label_timestamp true -# File output/id-label/refseq_rna.ttl is older than input/refseq_rna/download.lock -## Update output/id-label/refseq_rna.ttl -< 2024-11-16T18:48:25 refseq_rna -togoid-rdfize-id-label refseq_rna -> 2024-11-16T18:54:41 refseq_rna +> 2024-11-23T11:15:14 pubchem_pathway +### Update ID and Label TTL for refseq_rna if check_id_label_filesize false or check_id_label_timestamp false +# File output/id-label/refseq_rna.ttl is newer than input/refseq_rna/download.lock +# => Preserving output/ttl/refseq_rna.ttl ### Update ID and Label TTL for rgd if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/rgd.ttl has no timestamp file -# File output/id-label/rgd.ttl is created 7.401060451276852 days ago (will be updated when >5 days) +# File output/id-label/rgd.ttl is created 6.680150489129155 days ago (will be updated when >5 days) ## Update output/id-label/rgd.ttl -< 2024-11-16T18:54:41 rgd +< 2024-11-23T11:15:14 rgd togoid-rdfize-id-label rgd -> 2024-11-16T18:55:49 rgd +> 2024-11-23T11:16:21 rgd ### Update ID and Label TTL for sgd if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/sgd.ttl has no timestamp file -# File output/id-label/sgd.ttl is created 7.400938605651296 days ago (will be updated when >5 days) +# File output/id-label/sgd.ttl is created 6.680025382895162 days ago (will be updated when >5 days) ## Update output/id-label/sgd.ttl -< 2024-11-16T18:55:49 sgd +< 2024-11-23T11:16:21 sgd togoid-rdfize-id-label sgd -> 2024-11-16T18:57:07 sgd +> 2024-11-23T11:17:40 sgd ### Update ID and Label TTL for swisslipids if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/swisslipids.ttl is older than input/swisslipids/download.lock ## Update output/id-label/swisslipids.ttl -< 2024-11-16T18:57:07 swisslipids +< 2024-11-23T11:17:40 swisslipids togoid-rdfize-id-label swisslipids -> 2024-11-16T18:57:12 swisslipids +> 2024-11-23T11:17:49 swisslipids ### Update ID and Label TTL for tair if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/tair.ttl has no timestamp file -# File output/id-label/tair.ttl is created 7.400935741895464 days ago (will be updated when >5 days) +# File output/id-label/tair.ttl is created 6.680078274800093 days ago (will be updated when >5 days) ## Update output/id-label/tair.ttl -< 2024-11-16T18:57:12 tair +< 2024-11-23T11:17:49 tair togoid-rdfize-id-label tair -> 2024-11-16T18:58:30 tair +> 2024-11-23T11:19:07 tair ### Update ID and Label TTL for uniprot_reference_proteome if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/uniprot_reference_proteome.ttl has no timestamp file -# File output/id-label/uniprot_reference_proteome.ttl is created 7.401792886305011 days ago (will be updated when >5 days) +# File output/id-label/uniprot_reference_proteome.ttl is created 6.6809340659904395 days ago (will be updated when >5 days) ## Update output/id-label/uniprot_reference_proteome.ttl -< 2024-11-16T18:58:30 uniprot_reference_proteome +< 2024-11-23T11:19:07 uniprot_reference_proteome togoid-rdfize-id-label uniprot_reference_proteome -> 2024-11-16T18:58:34 uniprot_reference_proteome +> 2024-11-23T11:19:14 uniprot_reference_proteome ### Update ID and Label TTL for vgnc if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/vgnc.ttl has no timestamp file -# File output/id-label/vgnc.ttl is created 7.4009337971170375 days ago (will be updated when >5 days) +# File output/id-label/vgnc.ttl is created 6.680099114579595 days ago (will be updated when >5 days) ## Update output/id-label/vgnc.ttl -< 2024-11-16T18:58:34 vgnc +< 2024-11-23T11:19:14 vgnc togoid-rdfize-id-label vgnc -> 2024-11-16T18:59:53 vgnc +> 2024-11-23T11:20:32 vgnc ### Update ID and Label TTL for wormbase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/wormbase_gene.ttl has no timestamp file -# File output/id-label/wormbase_gene.ttl is created 7.400946030961388 days ago (will be updated when >5 days) +# File output/id-label/wormbase_gene.ttl is created 6.680105921543727 days ago (will be updated when >5 days) ## Update output/id-label/wormbase_gene.ttl -< 2024-11-16T18:59:53 wormbase_gene +< 2024-11-23T11:20:32 wormbase_gene togoid-rdfize-id-label wormbase_gene -> 2024-11-16T19:01:11 wormbase_gene +> 2024-11-23T11:21:50 wormbase_gene ### Update ID and Label TTL for xenbase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/xenbase_gene.ttl has no timestamp file -# File output/id-label/xenbase_gene.ttl is created 7.400943144699062 days ago (will be updated when >5 days) +# File output/id-label/xenbase_gene.ttl is created 6.680102540413622 days ago (will be updated when >5 days) ## Update output/id-label/xenbase_gene.ttl -< 2024-11-16T19:01:11 xenbase_gene +< 2024-11-23T11:21:50 xenbase_gene togoid-rdfize-id-label xenbase_gene -> 2024-11-16T19:02:29 xenbase_gene +> 2024-11-23T11:23:08 xenbase_gene ### Update ID and Label TTL for zfin_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/zfin_gene.ttl has no timestamp file -# File output/id-label/zfin_gene.ttl is created 7.4009452421131705 days ago (will be updated when >5 days) +# File output/id-label/zfin_gene.ttl is created 6.6801002901185305 days ago (will be updated when >5 days) ## Update output/id-label/zfin_gene.ttl -< 2024-11-16T19:02:29 zfin_gene +< 2024-11-23T11:23:08 zfin_gene togoid-rdfize-id-label zfin_gene -> 2024-11-16T19:03:47 zfin_gene +> 2024-11-23T11:24:26 zfin_gene Rule for ID and Label TTL (output/id-label/cellosaurus.ttl) ------------------------------ Investigating output/id-label/cellosaurus.ttl @@ -9580,4 +9621,4 @@ latest-prerequisite time: 2024-10-25 17:00:17 +0900 ................................ -*** Finished: 2024-11-16T19:03:47 *** +*** Finished: 2024-11-23T11:24:26 ***