From e1dd1464a8a96c45d26abfbc275812883837afb8 Mon Sep 17 00:00:00 2001 From: sh-ikeda Date: Tue, 26 Nov 2024 10:43:12 +0900 Subject: [PATCH 1/3] update curl version --- Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index 1b0c7559..ea4bfe7e 100644 --- a/Dockerfile +++ b/Dockerfile @@ -6,7 +6,7 @@ RUN apt-get update -y && apt-get install -y \ libjson-perl=4.04000-1 \ libany-uri-escape-perl=0.01-3 \ libwww-perl=6.61-1 \ - curl=7.81.0-1ubuntu1.18 \ + curl=7.81.0-1ubuntu1.19 \ wget=1.21.2-2ubuntu1 \ gawk=1:5.1.0-1build3 \ python3=3.10.6-1~22.04.1 \ From 50549598972d81f26dfaaccdc1b4e6145233cf2a Mon Sep 17 00:00:00 2001 From: Toshiaki Katayama Date: Sun, 1 Dec 2024 15:15:14 +0900 Subject: [PATCH 2/3] Updated logs --- log/error.log | 56 +- log/pair_count.tsv | 172 +- log/pair_count_history.tsv | 1 + log/update.log | 5243 +++++++++++++++++++----------------- 4 files changed, 2836 insertions(+), 2636 deletions(-) diff --git a/log/error.log b/log/error.log index 0ef2e372..1764e5ff 100644 --- a/log/error.log +++ b/log/error.log @@ -3,61 +3,49 @@ Error: check_remote_file_time(input/homologene/homologene.data, https://ftp.ncbi Error: Remote file is empty # Error: output/tsv/chembl_target-ensembl_gene.tsv new file size per old 0 / 61845 = 0.0 < 0.5 # Error: Failed to create output/tsv/chembl_target-ensembl_gene.tsv or created file was empty -Error: HTTP Error 500: Internal Server Error: https://api.alpha.glycosmos.org/partialmatch?wurcs=WURCS%3D2.0%2F4%2C11%2C10%2F%5Ba2122h-1b_1-5%5D%5Ba2112h-1b_1-5%5D%5Ba2122h-1b_1-5_2%2ANCC%2F3%3DO%5D%5Ba1221m-1a_1-5%5D%2F1-2-3-2-3-2-3-4-2-3-2%2Fa4-b1_b3-c1_c4-d1_d3-e1_e4-f1_f3-g1_g3-h1_g4-i1_i3-j1_j4-k1&rootnode=true G64227KZ +Error: HTTP Error 500: Internal Server Error: https://api.alpha.glycosmos.org/partialmatch?wurcs=WURCS%3D2.0%2F4%2C10%2C9%2F%5Ba2122h-1b_1-5%5D%5Ba2112h-1b_1-5%5D%5BAad21122h-2a_2-6_5%2ANCC%2F3%3DO%5D%5Ba2112h-1b_1-5_2%2ANCC%2F3%3DO%5D%2F1-2-3-3-3-4-2-3-3-3%2Fa4-b1_b3-c2_b4-f1_c8-d2_d8-e2_f3-g1_f6-j2_g3-h2_h8-i2&rootnode=true G14091MR # Error: output/tsv/glycomotif-glytoucan.tsv new file size per old 0 / 2804382 = 0.0 < 0.5 # Error: Failed to create output/tsv/glycomotif-glytoucan.tsv or created file was empty # Error: output/tsv/glytoucan-doid.tsv new file size per old 1538 / 4376 = 0.35146252285191953 < 0.5 # Error: output/tsv/hgnc-ccds.tsv new file size per old 252491 / 544502 = 0.46370995882476096 < 0.5 -# Error: output/tsv/lipidmaps-chebi.tsv new file size per old 248 / 253350 = 0.0009788829682257747 < 0.5 +# Error: output/tsv/lipidmaps-chebi.tsv new file size per old 148 / 253350 = 0.000584172093941188 < 0.5 # Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML 503 Service Unavailable +# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML 403 Forbidden # Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

Service Unavailable

-# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

The server is temporarily unable to service your -# Error: output/tsv/lipidmaps-chebi.tsv seems to be malformed request due to maintenance downtime or capacity -# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML problems. Please try again later.

+# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

Forbidden

+# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

You don't have permission to access this resource.

# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML # Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML 503 Service Unavailable +# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML 403 Forbidden # Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

Service Unavailable

-# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

The server is temporarily unable to service your -# Error: output/tsv/lipidmaps-chebi.tsv seems to be malformed request due to maintenance downtime or capacity -# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML problems. Please try again later.

+# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

Forbidden

+# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

You don't have permission to access this resource.

# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-inchi_key.tsv new file size per old 248 / 1976727 = 0.0001254599142926666 < 0.5 +# Error: output/tsv/lipidmaps-inchi_key.tsv new file size per old 148 / 1976727 = 7.487123917465588e-05 < 0.5 # Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML 503 Service Unavailable +# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML 403 Forbidden # Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

Service Unavailable

-# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

The server is temporarily unable to service your -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to be malformed request due to maintenance downtime or capacity -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML problems. Please try again later.

+# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

Forbidden

+# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

You don't have permission to access this resource.

# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML # Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML 503 Service Unavailable +# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML 403 Forbidden # Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

Service Unavailable

-# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

The server is temporarily unable to service your -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to be malformed request due to maintenance downtime or capacity -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML problems. Please try again later.

+# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

Forbidden

+# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

You don't have permission to access this resource.

# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-swisslipids.tsv new file size per old 248 / 284047 = 0.0008730949455547849 < 0.5 +# Error: output/tsv/lipidmaps-swisslipids.tsv new file size per old 148 / 284047 = 0.0005210405320246297 < 0.5 # Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML 503 Service Unavailable +# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML 403 Forbidden # Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

Service Unavailable

-# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

The server is temporarily unable to service your -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to be malformed request due to maintenance downtime or capacity -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML problems. Please try again later.

+# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

Forbidden

+# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

You don't have permission to access this resource.

# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML # Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML 503 Service Unavailable +# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML 403 Forbidden # Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

Service Unavailable

-# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

The server is temporarily unable to service your -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to be malformed request due to maintenance downtime or capacity -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML problems. Please try again later.

+# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

Forbidden

+# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

You don't have permission to access this resource.

# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML # Error: output/tsv/mbgd_gene-uniprot.tsv new file size per old 0 / 4017692184 = 0.0 < 0.5 # Error: Failed to create output/tsv/mbgd_gene-uniprot.tsv or created file was empty diff --git a/log/pair_count.tsv b/log/pair_count.tsv index 639a1229..c0e623cf 100644 --- a/log/pair_count.tsv +++ b/log/pair_count.tsv @@ -3,11 +3,11 @@ assembly_insdc-bioproject.tsv 2283159 assembly_insdc-biosample.tsv 2225812 assembly_insdc-insdc_master.tsv 2150193 bioproject-biosample.tsv 2546485 -bioproject-geo_series.tsv 220473 -bioproject-pubmed.tsv 281950 +bioproject-geo_series.tsv 220795 +bioproject-pubmed.tsv 282342 bioproject_umbrella-bioproject.tsv 104586 -biosample-bioproject.tsv 20329479 -biosample-geo_sample.tsv 9540054 +biosample-bioproject.tsv 20396501 +biosample-geo_sample.tsv 9554924 cellosaurus-ncit_disease.tsv 75821 cellosaurus-orphanet_phenotype.tsv 41448 chebi-glytoucan.tsv 10615 @@ -34,13 +34,13 @@ chembl_target-uniprot-TIO_000002.tsv 9094 chembl_target-uniprot-TIO_000130.tsv 1533 chembl_target-uniprot-TIO_000132.tsv 1434 chembl_target-uniprot.tsv 9094 -clinvar-dbsnp.tsv 2937841 -clinvar-hgnc.tsv 3061979 -clinvar-medgen.tsv 4196850 -clinvar-mondo.tsv 1993860 -clinvar-ncbigene.tsv 3062299 -clinvar-omim_phenotype.tsv 1639794 -clinvar-orphanet_phenotype.tsv 1865790 +clinvar-dbsnp.tsv 2937861 +clinvar-hgnc.tsv 3066621 +clinvar-medgen.tsv 4205873 +clinvar-mondo.tsv 1997764 +clinvar-ncbigene.tsv 3066941 +clinvar-omim_phenotype.tsv 1643410 +clinvar-orphanet_phenotype.tsv 1868752 clinvar-uniprot.tsv 20799 cog-insdc.tsv 115826 cog-refseq_protein.tsv 3340026 @@ -68,16 +68,16 @@ glytoucan-uniprot-TIO_000126.tsv 402 glytoucan-uniprot-TIO_000128.tsv 310 glytoucan-uniprot.tsv 82906 hgnc-ccds.tsv 35510 -hgnc-ec.tsv 2118 -hgnc-ensembl_gene.tsv 41199 -hgnc-hgnc_symbol.tsv 43838 +hgnc-ec.tsv 2121 +hgnc-ensembl_gene.tsv 41201 +hgnc-hgnc_symbol.tsv 43839 hgnc-insdc.tsv 21140 hgnc-lrg.tsv 1325 -hgnc-mgi_gene.tsv 24072 +hgnc-mgi_gene.tsv 24074 hgnc-mirbase.tsv 1912 hgnc-ncbigene.tsv 43753 -hgnc-omim_gene.tsv 17339 -hgnc-pubmed.tsv 35030 +hgnc-omim_gene.tsv 17345 +hgnc-pubmed.tsv 35045 hgnc-refseq_genomic.tsv 13532 hgnc-refseq_rna.tsv 28712 hgnc-rgd.tsv 18945 @@ -95,14 +95,14 @@ insdc-bioproject.tsv 59409158 insdc-biosample.tsv 193975949 insdc_master-bioproject.tsv 1533582 insdc_master-biosample.tsv 1533178 -interpro-go.tsv 30282 -interpro-pdb.tsv 1645155 -interpro-pfam.tsv 21310 +interpro-go.tsv 30269 +interpro-pdb.tsv 1679206 +interpro-pfam.tsv 22308 interpro-prosite.tsv 1282 -interpro-pubmed.tsv 114937 -interpro-reactome_pathway.tsv 477238 +interpro-pubmed.tsv 116156 +interpro-reactome_pathway.tsv 479226 interpro-smart.tsv 1274 -interpro-uniprot.tsv 770832917 +interpro-uniprot.tsv 787874156 jga_study-jga_dataset.tsv 199 jga_study-nbdc_human_db.tsv 305 jga_study-pubmed.tsv 130 @@ -111,20 +111,20 @@ lipidmaps-inchi_key.tsv 48152 lipidmaps-swisslipids.tsv 12349 mbgd_gene-uniprot.tsv 137319849 mbgd_organism-taxonomy.tsv 6318 -medgen-hp_phenotype.tsv 16674 -medgen-mesh.tsv 16849 -medgen-mondo.tsv 21567 -medgen-ncbigene.tsv 7229 -medgen-omim_phenotype.tsv 11043 -medgen-orphanet_phenotype.tsv 9063 +medgen-hp_phenotype.tsv 18747 +medgen-mesh.tsv 17044 +medgen-mondo.tsv 22699 +medgen-ncbigene.tsv 7334 +medgen-omim_phenotype.tsv 11369 +medgen-orphanet_phenotype.tsv 9044 mgi_gene-ensembl_gene.tsv 56426 mgi_gene-hgnc.tsv 24584 -mgi_gene-mgi_allele.tsv 112050 +mgi_gene-mgi_allele.tsv 112132 mgi_gene-ncbigene.tsv 90618 mgi_gene-uniprot.tsv 79070 -mgi_genotype-doid.tsv 7840 -mgi_genotype-mgi_allele.tsv 125052 -mgi_genotype-mp.tsv 401482 +mgi_genotype-doid.tsv 7844 +mgi_genotype-mgi_allele.tsv 125076 +mgi_genotype-mp.tsv 401601 mondo-doid.tsv 10712 mondo-hp_phenotype.tsv 574 mondo-meddra.tsv 1486 @@ -132,26 +132,26 @@ mondo-mesh.tsv 8352 mondo-omim_phenotype.tsv 9693 mondo-orphanet_phenotype.tsv 10380 nando-mondo.tsv 2390 -ncbigene-ensembl_gene.tsv 11681986 -ncbigene-ensembl_protein.tsv 13454144 -ncbigene-ensembl_transcript.tsv 14146143 +ncbigene-ensembl_gene.tsv 11788765 +ncbigene-ensembl_protein.tsv 13562686 +ncbigene-ensembl_transcript.tsv 14257220 ncbigene-flybase_gene.tsv 25078 ncbigene-go.tsv 102598546 -ncbigene-hgnc.tsv 43845 +ncbigene-hgnc.tsv 43858 ncbigene-mgi_gene.tsv 71682 ncbigene-mirbase.tsv 17541 -ncbigene-omim_gene.tsv 18551 -ncbigene-refseq_genomic.tsv 211770 -ncbigene-refseq_protein.tsv 69690608 -ncbigene-refseq_rna.tsv 67642626 +ncbigene-omim_gene.tsv 18557 +ncbigene-refseq_genomic.tsv 211769 +ncbigene-refseq_protein.tsv 69787101 +ncbigene-refseq_rna.tsv 67711060 ncbigene-rgd.tsv 77241 ncbigene-sgd.tsv 6471 ncbigene-tair.tsv 32835 -ncbigene-taxonomy.tsv 57768578 -ncbigene-vgnc.tsv 112162 +ncbigene-taxonomy.tsv 57849022 +ncbigene-vgnc.tsv 112163 ncbigene-wormbase_gene.tsv 28785 ncbigene-xenbase_gene.tsv 46840 -ncbigene-zfin_gene.tsv 27177 +ncbigene-zfin_gene.tsv 27178 ncit_disease-ncit_tissue.tsv 27199 oma_protein-ensembl_gene.tsv 2533621 oma_protein-ensembl_transcript.tsv 2925554 @@ -170,14 +170,14 @@ pdb-interpro.tsv 726658 pdb-pdb_ccd.tsv 530587 pdb-pfam.tsv 339565 pdb-uniprot.tsv 341431 -pmc-pubmed.tsv 9664384 -prosite-prosite_prorule.tsv 1455 +pmc-pubmed.tsv 9686203 +prosite-prosite_prorule.tsv 1459 pubchem_compound-atc.tsv 4965 pubchem_compound-chebi.tsv 174843 pubchem_compound-chembl_compound.tsv 2372556 pubchem_compound-drugbank.tsv 10789 pubchem_compound-glytoucan.tsv 69203 -pubchem_compound-inchi_key.tsv 119096713 +pubchem_compound-inchi_key.tsv 119105151 pubchem_pathway-ncbigene.tsv 33861 pubchem_pathway-pathbank.tsv 69387 pubchem_pathway-pubchem_compound.tsv 1253395 @@ -205,32 +205,32 @@ refseq_rna-refseq_protein.tsv 58133044 refseq_rna-taxonomy.tsv 66987567 rhea-chebi.tsv 216654 rhea-ec.tsv 7719 -rhea-go.tsv 4435 +rhea-go.tsv 4448 rhea-pubmed.tsv 142680 rhea-reactome_reaction.tsv 1511 -rhea-uniprot.tsv 41448659 -sra_accession-bioproject.tsv 537619 -sra_accession-biosample.tsv 32063559 -sra_accession-sra_analysis.tsv 329284 -sra_accession-sra_experiment.tsv 36134714 -sra_accession-sra_project.tsv 625496 -sra_accession-sra_run.tsv 40945774 -sra_accession-sra_sample.tsv 34837349 -sra_experiment-bioproject.tsv 31577033 -sra_experiment-biosample.tsv 31881755 -sra_experiment-sra_project.tsv 31921554 -sra_experiment-sra_sample.tsv 31921277 -sra_project-bioproject.tsv 537638 -sra_run-bioproject.tsv 33463976 -sra_run-biosample.tsv 33772350 -sra_run-sra_experiment.tsv 33847764 -sra_run-sra_project.tsv 33821271 -sra_run-sra_sample.tsv 33813940 -sra_sample-biosample.tsv 32077978 +rhea-uniprot.tsv 42384671 +sra_accession-bioproject.tsv 542643 +sra_accession-biosample.tsv 32363187 +sra_accession-sra_analysis.tsv 329302 +sra_accession-sra_experiment.tsv 36336095 +sra_accession-sra_project.tsv 628309 +sra_accession-sra_run.tsv 41154297 +sra_accession-sra_sample.tsv 35034099 +sra_experiment-bioproject.tsv 31872172 +sra_experiment-biosample.tsv 32197530 +sra_experiment-sra_project.tsv 32216693 +sra_experiment-sra_sample.tsv 32216416 +sra_project-bioproject.tsv 542662 +sra_run-bioproject.tsv 33756784 +sra_run-biosample.tsv 34098040 +sra_run-sra_experiment.tsv 34123060 +sra_run-sra_project.tsv 34114079 +sra_run-sra_sample.tsv 34116949 +sra_sample-biosample.tsv 32377606 swisslipids-chebi.tsv 4276 swisslipids-hmdb.tsv 26026 swisslipids-inchi_key.tsv 593209 -taxonomy-pubmed.tsv 50616 +taxonomy-pubmed.tsv 50711 togovar-clinvar.tsv 745335 togovar-dbsnp.tsv 66877211 togovar-ensembl_gene.tsv 72473309 @@ -241,33 +241,33 @@ togovar-ncbigene.tsv 60001809 togovar-pubmed.tsv 692119 togovar-refseq_rna.tsv 173346179 uberon-ncit_tissue.tsv 2578 -uniprot-chembl_target.tsv 10336 +uniprot-chembl_target.tsv 10340 uniprot-dbsnp.tsv 66728 uniprot-ec.tsv 41313492 -uniprot-ensembl_gene.tsv 9613808 -uniprot-ensembl_protein.tsv 9834392 -uniprot-ensembl_transcript.tsv 9834392 -uniprot-go.tsv 532822218 -uniprot-hgnc.tsv 82524 -uniprot-insdc.tsv 264947440 +uniprot-ensembl_gene.tsv 9647701 +uniprot-ensembl_protein.tsv 9863257 +uniprot-ensembl_transcript.tsv 9863257 +uniprot-go.tsv 590661858 +uniprot-hgnc.tsv 82519 +uniprot-insdc.tsv 269942826 uniprot-intact.tsv 237103 -uniprot-ncbigene.tsv 12855457 -uniprot-oma_group.tsv 7617387 +uniprot-ncbigene.tsv 13525491 +uniprot-oma_group.tsv 7583382 uniprot-omim_gene.tsv 16357 uniprot-omim_phenotype.tsv 7263 -uniprot-orphanet_phenotype.tsv 7981 -uniprot-pdb.tsv 390829 +uniprot-orphanet_phenotype.tsv 7996 +uniprot-pdb.tsv 400528 uniprot-reactome_pathway.tsv 282944 -uniprot_reference_proteome-assembly_insdc.tsv 641755 -uniprot_reference_proteome-assembly_refseq.tsv 191 -uniprot_reference_proteome-taxonomy.tsv 698680 -uniprot-refseq_protein.tsv 45329880 -uniprot-taxonomy.tsv 248838887 -uniprot-uniprot_mnemonic.tsv 248838887 +uniprot_reference_proteome-assembly_insdc.tsv 733559 +uniprot_reference_proteome-assembly_refseq.tsv 190 +uniprot_reference_proteome-taxonomy.tsv 790497 +uniprot-refseq_protein.tsv 46026396 +uniprot-taxonomy.tsv 254254987 +uniprot-uniprot_mnemonic.tsv 254254987 wikipathways-chebi.tsv 5929 wikipathways-doid.tsv 1153 wikipathways-hmdb.tsv 4131 wikipathways-lipidmaps.tsv 1429 wikipathways-ncbigene.tsv 30267 wikipathways-uniprot.tsv 33518 -total 5199738167 +total 5297665623 diff --git a/log/pair_count_history.tsv b/log/pair_count_history.tsv index 8efbeb7c..11e2b97a 100644 --- a/log/pair_count_history.tsv +++ b/log/pair_count_history.tsv @@ -66,3 +66,4 @@ Date affy_probeset-ncbigene assembly_insdc-bioproject assembly_insdc-biosample a 2024-11-09 19063 2283159 2225812 2150193 2546485 219632 281330 104586 20225455 9517180 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937837 3055902 4188105 1991707 3056222 1637694 1862922 20799 115826 3340026 4019 4849 5671 55423 12969337 15910019 47792 14749031 5546630 12969340 241195 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2083 41244 43882 21162 1325 24072 1912 43813 17320 34994 13532 28776 18945 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24584 111129 90618 79070 7839 124777 401337 10712 574 1486 8352 9693 10380 2390 11671126 13442166 14133624 25078 102174808 43833 71682 17541 18544 211764 69154949 67173056 47289 6471 32835 57240175 112162 28785 46841 27171 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9629383 1455 4965 174843 2372556 10789 69203 119084186 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154618104 267059416 227230 65546825 190869 6191600 56922967 65576846 216654 7719 4435 142680 1511 41448659 537052 32023315 329284 35985315 623349 40790046 34699841 31502359 31834873 31846880 31846603 537071 33386528 33719878 33751992 33743823 33731672 32037734 4276 26026 593209 50581 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 11471 1148 4125 1398 30268 33518 5192207706 2024-11-16 19063 2283159 2225812 2150193 2546485 220020 281552 104586 20274353 9528638 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937845 3060210 4193666 1992996 3060530 1638969 1865227 20799 115826 3340026 4019 4849 5671 55423 12969337 15910019 47792 14749031 5546630 12969340 241195 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2083 41244 43882 21162 1325 24072 1912 43813 17320 34994 13532 28776 18945 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24584 111987 90618 79070 7839 124809 401409 10712 574 1486 8352 9693 10380 2390 11671120 13442158 14133616 25078 102174797 43838 71682 17541 18546 211768 69217894 67173120 47289 6471 32835 57305467 112162 28785 46841 27177 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9638140 1455 4965 174843 2372556 10789 69203 119096080 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154617878 267033326 227308 66957414 190999 6311722 58133044 66987567 216654 7719 4435 142680 1511 41448659 537477 32055914 329284 36095148 624977 40902883 34804828 31554967 31873477 31899488 31899211 537496 33441595 33758531 33817349 33798890 33786315 32070333 4276 26026 593209 50609 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 5929 1153 4131 1429 30267 33518 5197418100 2024-11-23 19063 2283159 2225812 2150193 2546485 220473 281950 104586 20329479 9540054 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937841 3061979 4196850 1993860 3062299 1639794 1865790 20799 115826 3340026 4019 4849 5671 55423 12969337 15910019 47792 14749031 5546630 12969340 241195 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2118 41199 43838 21140 1325 24072 1912 43753 17339 35030 13532 28712 18945 20374 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24584 112050 90618 79070 7840 125052 401482 10712 574 1486 8352 9693 10380 2390 11681986 13454144 14146143 25078 102598546 43845 71682 17541 18551 211770 69690608 67642626 77241 6471 32835 57768578 112162 28785 46840 27177 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9664384 1455 4965 174843 2372556 10789 69203 119096713 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154617876 267033326 227308 66957414 190999 6311722 58133044 66987567 216654 7719 4435 142680 1511 41448659 537619 32063559 329284 36134714 625496 40945774 34837349 31577033 31881755 31921554 31921277 537638 33463976 33772350 33847764 33821271 33813940 32077978 4276 26026 593209 50616 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 5929 1153 4131 1429 30267 33518 5199738167 +2024-12-01 19063 2283159 2225812 2150193 2546485 220795 282342 104586 20396501 9554924 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937861 3066621 4205873 1997764 3066941 1643410 1868752 20799 115826 3340026 4019 4849 5671 55423 12969337 15910019 47792 14749031 5546630 12969340 241195 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2121 41201 43839 21140 1325 24074 1912 43753 17345 35045 13532 28712 18945 20374 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30269 1679206 22308 1282 116156 479226 1274 787874156 199 305 130 12929 48152 12349 137319849 6318 18747 17044 22699 7334 11369 9044 56426 24584 112132 90618 79070 7844 125076 401601 10712 574 1486 8352 9693 10380 2390 11788765 13562686 14257220 25078 102598546 43858 71682 17541 18557 211769 69787101 67711060 77241 6471 32835 57849022 112163 28785 46840 27178 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9686203 1459 4965 174843 2372556 10789 69203 119105151 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154617876 267033326 227308 66957414 190999 6311722 58133044 66987567 216654 7719 4448 142680 1511 42384671 542643 32363187 329302 36336095 628309 41154297 35034099 31872172 32197530 32216693 32216416 542662 33756784 34098040 34123060 34114079 34116949 32377606 4276 26026 593209 50711 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10340 66728 41313492 9647701 9863257 9863257 590661858 82519 269942826 237103 13525491 7583382 16357 7263 7996 400528 282944 46026396 254254987 254254987 733559 190 790497 5929 1153 4131 1429 30267 33518 5297665623 diff --git a/log/update.log b/log/update.log index cf7d00f9..e3e534a8 100644 --- a/log/update.log +++ b/log/update.log @@ -1,19 +1,20 @@ -*** Started: 2024-11-22T20:41:44 *** +*** Started: 2024-11-29T17:00:21 *** ## Prepare input files for BioProject # Checking lock file input/bioproject/download.lock for download -# Local file time: 2024-11-21 19:25:00 +0900 (input/bioproject/bioproject.xml) -# Remote file time: 2024-11-22 10:24:34 +0000 (https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml) +# Local file time: 2024-11-22 19:24:34 +0900 (input/bioproject/bioproject.xml) +# Remote file time: 2024-11-28 10:15:01 +0000 (https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/bioproject https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml python bin/bioproject_xml2tsv.py input/bioproject/bioproject.xml > input/bioproject/bioproject.tsv # Overwriting timestamp of the input/bioproject/download.lock ## Prepare input files for BioSample # Checking lock file input/biosample/download.lock for download # Local file time: 2024-11-20 23:21:27 +0900 (input/biosample/biosample_set.xml.gz) -# Remote file time: 2024-11-20 14:21:27 +0000 (https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz) -# Local file size: 3168609624 (input/biosample/biosample_set.xml.gz) -# Remote file size: 3168609624 (https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz) -# Preserving timestamp of the input/biosample/download.lock +# Remote file time: 2024-11-28 14:34:28 +0000 (https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/biosample https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz +gzip -dc input/biosample/biosample_set.xml.gz > input/biosample/biosample_set.xml +python bin/biosample_xml2tsv.py input/biosample/biosample_set.xml > input/biosample/biosample_set.tsv +# Overwriting timestamp of the input/biosample/download.lock ## Prepare input files for Cellosaurus # Checking lock file input/cellosaurus/download.lock for download # Local file time: 2024-09-10 19:57:24 +0900 (input/cellosaurus/cellosaurus.txt) @@ -24,14 +25,15 @@ python bin/bioproject_xml2tsv.py input/bioproject/bioproject.xml > input/bioproj ## Prepare input files for ClinVar # Checking lock file input/clinvar/download.lock for download # Local file time: 2024-11-21 07:27:11 +0900 (input/clinvar/variant_summary.txt.gz) -# Remote file time: 2024-11-20 22:27:11 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz) -# Local file size: 286525403 (input/clinvar/variant_summary.txt.gz) -# Remote file size: 286525403 (https://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz) -# Preserving timestamp of the input/clinvar/download.lock +# Remote file time: 2024-11-26 17:55:50 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/clinvar https://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz +gzip -dc input/clinvar/variant_summary.txt.gz > input/clinvar/variant_summary.txt +# Overwriting timestamp of the input/clinvar/download.lock ## Prepare input files for Ensembl # Checking lock file input/ensembl/download.lock for download -# File input/ensembl/taxonomy.txt is created 0.0626608927697801 days ago (will be updated when >5 days) -# Preserving timestamp of the input/ensembl/download.lock +# File input/ensembl/taxonomy.txt is created 6.999821726055798 days ago (will be updated when >5 days) +sparql_csv2tsv.sh input/ensembl/taxonomy.rq https://rdfportal.org/ebi/sparql > input/ensembl/taxonomy.txt +# Overwriting timestamp of the input/ensembl/download.lock ## Prepare input files for GlyTouCan # Checking lock file input/glytoucan/download.lock for download wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/glytoucan https://glycosmos.org/download/glycosmos_ggdbs_pubmed.csv @@ -47,8 +49,8 @@ sparql_csv2tsv.sh bin/sparql/glycogene-uniprot.rq https://ts.glycosmos.org/sparq # Preserving timestamp of the input/hmdb/download.lock ## Prepare input files for HGNC # Checking lock file input/hgnc/download.lock for download -# Local file time: 2024-10-19 02:02:15 +0900 (input/hgnc/hgnc_complete_set.txt) -# Remote file time: 2024-11-19 14:39:37 +0000 (https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt) +# Local file time: 2024-11-19 23:39:37 +0900 (input/hgnc/hgnc_complete_set.txt) +# Remote file time: 2024-11-26 15:28:00 +0000 (https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/hgnc https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt # Overwriting timestamp of the input/hgnc/download.lock ## Prepare input files for Homologene @@ -84,63 +86,62 @@ bin/sparql_csv2tsv.sh bin/sparql/hp_category.rq https://rdfportal.org/bioportal/ ## Prepare input files for InterPro # Checking lock file input/interpro/download.lock for download # Local file time: 2024-10-03 04:54:02 +0900 (input/interpro/interpro2go) -# Remote file time: 2024-10-02 19:54:02 +0000 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro2go) -# Local file size: 3098926 (input/interpro/interpro2go) -# Remote file size: 3098926 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro2go) +# Remote file time: 2024-11-28 05:19:34 +0000 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro2go) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/interpro https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro2go # Local file time: 2024-10-03 05:06:15 +0900 (input/interpro/protein2ipr.dat.gz) -# Remote file time: 2024-10-02 20:06:15 +0000 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz) -# Local file size: 20472670804 (input/interpro/protein2ipr.dat.gz) -# Remote file size: 20472670804 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz) +# Remote file time: 2024-11-28 05:32:12 +0000 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/interpro https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz +gzip -dc input/interpro/protein2ipr.dat.gz > input/interpro/protein2ipr.dat # Local file time: 2024-10-03 04:54:02 +0900 (input/interpro/interpro.xml.gz) -# Remote file time: 2024-10-02 19:54:02 +0000 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro.xml.gz) -# Local file size: 38253336 (input/interpro/interpro.xml.gz) -# Remote file size: 38253336 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro.xml.gz) -# Preserving timestamp of the input/interpro/download.lock +# Remote file time: 2024-11-28 05:19:34 +0000 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro.xml.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/interpro https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro.xml.gz +gzip -dc input/interpro/interpro.xml.gz | python bin/interpro_xml2tsv.py > input/interpro/interpro.tsv +# Overwriting timestamp of the input/interpro/download.lock ## Prepare input files for MGI_GENE # Checking lock file input/mgi_gene/download.lock for download -# Local file time: 2024-11-11 22:02:12 +0900 (input/mgi_gene/MRK_List2.rpt) -# Remote file time: 2024-11-18 13:01:51 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt) +# Local file time: 2024-11-18 22:01:51 +0900 (input/mgi_gene/MRK_List2.rpt) +# Remote file time: 2024-11-25 13:03:48 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt -# Local file time: 2024-11-11 22:00:53 +0900 (input/mgi_gene/MGI_Gene_Model_Coord.rpt) -# Remote file time: 2024-11-18 13:00:48 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt) +# Local file time: 2024-11-18 22:00:48 +0900 (input/mgi_gene/MGI_Gene_Model_Coord.rpt) +# Remote file time: 2024-11-25 13:01:48 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt -# Local file time: 2024-11-11 22:02:21 +0900 (input/mgi_gene/MRK_SwissProt_TrEMBL.rpt) -# Remote file time: 2024-11-18 13:01:58 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt) +# Local file time: 2024-11-18 22:01:58 +0900 (input/mgi_gene/MRK_SwissProt_TrEMBL.rpt) +# Remote file time: 2024-11-25 13:03:58 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt -# Local file time: 2024-11-11 22:00:29 +0900 (input/mgi_gene/HGNC_AllianceHomology.rpt) -# Remote file time: 2024-11-18 13:00:25 +0000 (https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt) +# Local file time: 2024-11-18 22:00:25 +0900 (input/mgi_gene/HGNC_AllianceHomology.rpt) +# Remote file time: 2024-11-25 13:00:44 +0000 (https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt -# Local file time: 2024-11-11 22:01:42 +0900 (input/mgi_gene/MGI_PhenotypicAllele.rpt) -# Remote file time: 2024-11-18 13:01:26 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt) +# Local file time: 2024-11-18 22:01:26 +0900 (input/mgi_gene/MGI_PhenotypicAllele.rpt) +# Remote file time: 2024-11-25 13:03:10 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt # Overwriting timestamp of the input/mgi_gene/download.lock ## Prepare input files for MGI_GENOTYPE # Checking lock file input/mgi_genotype/download.lock for download -# Local file time: 2024-11-11 22:00:45 +0900 (input/mgi_genotype/MGI_DiseaseGeneModel.rpt) -# Remote file time: 2024-11-18 13:00:41 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt) +# Local file time: 2024-11-18 22:00:41 +0900 (input/mgi_genotype/MGI_DiseaseGeneModel.rpt) +# Remote file time: 2024-11-25 13:01:31 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_genotype https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt ruby bin/query_mousemine.rb > input/mgi_genotype/mousemine_genotype.tsv # Overwriting timestamp of the input/mgi_genotype/download.lock ## Prepare input files for NCBI Gene # Checking lock file input/ncbigene/download.lock for download -# Local file time: 2024-11-15 16:10:15 +0900 (input/ncbigene/gene2refseq.gz) -# Remote file time: 2024-11-22 05:11:45 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz) +# Local file time: 2024-11-22 14:11:45 +0900 (input/ncbigene/gene2refseq.gz) +# Remote file time: 2024-11-28 06:56:00 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz gzip -dc input/ncbigene/gene2refseq.gz > input/ncbigene/gene2refseq -# Local file time: 2024-11-15 16:02:56 +0900 (input/ncbigene/gene2ensembl.gz) -# Remote file time: 2024-11-22 05:06:58 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz) +# Local file time: 2024-11-22 14:06:58 +0900 (input/ncbigene/gene2ensembl.gz) +# Remote file time: 2024-11-28 06:51:22 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz gzip -dc input/ncbigene/gene2ensembl.gz > input/ncbigene/gene2ensembl -# Local file time: 2024-11-15 16:05:22 +0900 (input/ncbigene/gene2go.gz) -# Remote file time: 2024-11-22 05:08:45 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz) +# Local file time: 2024-11-22 14:08:45 +0900 (input/ncbigene/gene2go.gz) +# Remote file time: 2024-11-28 06:53:04 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz gzip -dc input/ncbigene/gene2go.gz > input/ncbigene/gene2go -# Local file time: 2024-11-15 16:21:03 +0900 (input/ncbigene/Homo_sapiens.gene_info.gz) -# Remote file time: 2024-11-22 05:19:04 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz) +# Local file time: 2024-11-22 14:19:04 +0900 (input/ncbigene/Homo_sapiens.gene_info.gz) +# Remote file time: 2024-11-28 07:03:20 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz gzip -dc input/ncbigene/Homo_sapiens.gene_info.gz > input/ncbigene/Homo_sapiens.gene_info -# Local file time: 2024-11-15 16:13:14 +0900 (input/ncbigene/gene_info.gz) -# Remote file time: 2024-11-22 05:13:43 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz) +# Local file time: 2024-11-22 14:13:43 +0900 (input/ncbigene/gene_info.gz) +# Remote file time: 2024-11-28 06:57:52 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz gzip -dc input/ncbigene/gene_info.gz > input/ncbigene/gene_info # Overwriting timestamp of the input/ncbigene/download.lock @@ -161,22 +162,20 @@ gzip -dc input/ncbigene/gene_info.gz > input/ncbigene/gene_info # Preserving timestamp of the input/oma_protein/download.lock ## Prepare input files for PMC # Checking lock file input/pmc/download.lock for download -# Local file time: 2024-11-14 19:10:18 +0900 (input/pmc/PMC-ids.csv.gz) -# Remote file time: 2024-11-22 10:24:41 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz) +# Local file time: 2024-11-22 19:24:41 +0900 (input/pmc/PMC-ids.csv.gz) +# Remote file time: 2024-11-29 10:21:14 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/pmc https://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz gzip -dc input/pmc/PMC-ids.csv.gz > input/pmc/PMC-ids.csv # Overwriting timestamp of the input/pmc/download.lock ## Prepare input files for PROSITE # Checking lock file input/prosite/download.lock for download # Local file time: 2024-10-02 22:00:00 +0900 (input/prosite/prosite.dat) -# Remote file time: 2024-10-02 13:00:00 +0000 (https://ftp.expasy.org/databases/prosite/prosite.dat) -# Local file size: 24639920 (input/prosite/prosite.dat) -# Remote file size: 24639920 (https://ftp.expasy.org/databases/prosite/prosite.dat) +# Remote file time: 2024-11-27 15:00:00 +0000 (https://ftp.expasy.org/databases/prosite/prosite.dat) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/prosite https://ftp.expasy.org/databases/prosite/prosite.dat # Local file time: 2024-10-02 22:00:00 +0900 (input/prosite/prorule.dat) -# Remote file time: 2024-10-02 13:00:00 +0000 (https://ftp.expasy.org/databases/prosite/prorule.dat) -# Local file size: 1433558 (input/prosite/prorule.dat) -# Remote file size: 1433558 (https://ftp.expasy.org/databases/prosite/prorule.dat) -# Preserving timestamp of the input/prosite/download.lock +# Remote file time: 2024-11-27 15:00:00 +0000 (https://ftp.expasy.org/databases/prosite/prorule.dat) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/prosite https://ftp.expasy.org/databases/prosite/prorule.dat +# Overwriting timestamp of the input/prosite/download.lock ## Prepare input files for Reactome # Checking lock file input/reactome/download.lock for download # Local file time: 2024-09-29 11:50:03 +0900 (input/reactome/UniProt2ReactomeReactions.txt) @@ -230,8 +229,8 @@ gzip -dc input/pmc/PMC-ids.csv.gz > input/pmc/PMC-ids.csv # Preserving timestamp of the input/reactome/download.lock ## Prepare input files for RefSeq Protein # Checking lock file input/refseq_protein/download.lock for download -# Local file time: 2024-11-14 19:22:40 +0900 (input/refseq_protein/gene_refseq_uniprotkb_collab.gz) -# Remote file time: 2024-11-21 10:22:57 +0000 (https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz) +# Local file time: 2024-11-21 19:22:57 +0900 (input/refseq_protein/gene_refseq_uniprotkb_collab.gz) +# Remote file time: 2024-11-28 10:22:48 +0000 (https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/refseq_protein https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz # Overwriting timestamp of the input/refseq_protein/download.lock ## Prepare input files for RefSeq RNA @@ -244,22 +243,20 @@ wget --quiet --recursive --no-parent --no-directories --timestamping --no-check- ## Prepare input files for Rhea # Checking lock file input/rhea/download.lock for download # Local file time: 2024-10-02 22:00:00 +0900 (input/rhea/rhea2uniprot_sprot.tsv) -# Remote file time: 2024-10-02 13:00:00 +0000 (https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_sprot.tsv) -# Local file size: 8141503 (input/rhea/rhea2uniprot_sprot.tsv) -# Remote file size: 8141503 (https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_sprot.tsv) +# Remote file time: 2024-11-27 15:00:00 +0000 (https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_sprot.tsv) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/rhea https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_sprot.tsv # Local file time: 2024-10-02 22:00:00 +0900 (input/rhea/rhea2uniprot_trembl.tsv.gz) -# Remote file time: 2024-10-02 13:00:00 +0000 (https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_trembl.tsv.gz) -# Local file size: 181951066 (input/rhea/rhea2uniprot_trembl.tsv.gz) -# Remote file size: 181951066 (https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_trembl.tsv.gz) +# Remote file time: 2024-11-27 15:00:00 +0000 (https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_trembl.tsv.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/rhea https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_trembl.tsv.gz +gzip -dc input/rhea/rhea2uniprot_trembl.tsv.gz > input/rhea/rhea2uniprot_trembl.tsv # Local file time: 2024-10-02 22:00:00 +0900 (input/rhea/rhea2go.tsv) -# Remote file time: 2024-10-02 13:00:00 +0000 (https://ftp.expasy.org/databases/rhea/tsv/rhea2go.tsv) -# Local file size: 115627 (input/rhea/rhea2go.tsv) -# Remote file size: 115627 (https://ftp.expasy.org/databases/rhea/tsv/rhea2go.tsv) -# Preserving timestamp of the input/rhea/download.lock +# Remote file time: 2024-11-27 15:00:00 +0000 (https://ftp.expasy.org/databases/rhea/tsv/rhea2go.tsv) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/rhea https://ftp.expasy.org/databases/rhea/tsv/rhea2go.tsv +# Overwriting timestamp of the input/rhea/download.lock ## Prepare input files for SRA # Checking lock file input/sra/download.lock for download -# Local file time: 2024-11-15 04:01:40 +0900 (input/sra/SRA_Accessions.tab) -# Remote file time: 2024-11-17 19:21:17 +0000 (https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab) +# Local file time: 2024-11-18 04:21:17 +0900 (input/sra/SRA_Accessions.tab) +# Remote file time: 2024-11-28 15:57:33 +0000 (https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/sra https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab # Overwriting timestamp of the input/sra/download.lock ## Prepare input files for SwissLipids @@ -272,225 +269,224 @@ gzip -dc input/swisslipids/lipids2uniprot.tsv.gz > input/swisslipids/lipids2unip ## Prepare input files for UniProt # Checking lock file input/uniprot/download.lock for download # Local file time: 2024-10-03 01:34:13 +0900 (input/uniprot/idmapping.dat.gz) -# Remote file time: 2024-10-02 16:34:13 +0000 (https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping.dat.gz) -# Local file size: 23208508920 (input/uniprot/idmapping.dat.gz) -# Remote file size: 23208508920 (https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping.dat.gz) +# Remote file time: 2024-11-27 13:47:05 +0000 (https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping.dat.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/uniprot https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping.dat.gz # Local file time: 2024-10-03 01:34:13 +0900 (input/uniprot/idmapping_selected.tab.gz) -# Remote file time: 2024-10-02 16:34:13 +0000 (https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping_selected.tab.gz) -# Local file size: 12031237277 (input/uniprot/idmapping_selected.tab.gz) -# Remote file size: 12031237277 (https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping_selected.tab.gz) +# Remote file time: 2024-11-27 13:47:05 +0000 (https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping_selected.tab.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/uniprot https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping_selected.tab.gz +gzip -dc input/uniprot/idmapping_selected.tab.gz | cut -f 1,7 | grep 'GO:' > input/uniprot/idmapping_selected.go wget --quiet --no-check-certificate -O input/uniprot/uniprot_reference_proteome.tab.gz 'https://rest.uniprot.org/proteomes/stream?compressed=true&fields=upid%2Corganism_id%2Cgenome_assembly%2Corganism&format=tsv&query=%28%2A%29' -# Preserving timestamp of the input/uniprot/download.lock +# Overwriting timestamp of the input/uniprot/download.lock ## Prepare input files for Taxonomy # Checking lock file input/taxonomy/download.lock for download -# Local file time: 2024-11-16 02:29:07 +0900 (input/taxonomy/taxdump.tar.gz) -# Remote file time: 2024-11-22 12:28:36 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz) +# Local file time: 2024-11-22 21:28:36 +0900 (input/taxonomy/taxdump.tar.gz) +# Remote file time: 2024-11-29 12:28:38 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/taxonomy https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz mkdir -p input/taxonomy/taxdump && tar xzf input/taxonomy/taxdump.tar.gz -C input/taxonomy/taxdump/ # Overwriting timestamp of the input/taxonomy/download.lock ### Update TSV for affy_probeset-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/affy_probeset-ncbigene.tsv is newer than config/affy_probeset-ncbigene/config.yaml # File output/tsv/affy_probeset-ncbigene.tsv has no timestamp file -# File output/tsv/affy_probeset-ncbigene.tsv is created 6.778924766252802 days ago (will be updated when >5 days) +# File output/tsv/affy_probeset-ncbigene.tsv is created 6.988535268888519 days ago (will be updated when >5 days) ## Update config/affy_probeset-ncbigene/config.yaml => output/tsv/affy_probeset-ncbigene.tsv -< 2024-11-22T21:53:47 affy_probeset-ncbigene +< 2024-11-29T21:37:18 affy_probeset-ncbigene togoid-config config/affy_probeset-ncbigene update # Success: output/tsv/affy_probeset-ncbigene.tsv is updated -> 2024-11-22T21:53:48 affy_probeset-ncbigene +> 2024-11-29T21:37:19 affy_probeset-ncbigene Rule for TSV (output/tsv/affy_probeset-ncbigene.tsv) ------------------------------ Investigating output/tsv/affy_probeset-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 21:53:48 +0900 +timestamp: 2024-11-29 21:37:19 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for assembly_insdc-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-bioproject.tsv is newer than config/assembly_insdc-bioproject/config.yaml # File output/tsv/assembly_insdc-bioproject.tsv has no timestamp file -# File output/tsv/assembly_insdc-bioproject.tsv is created 6.778915314987674 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-bioproject.tsv is created 6.988524191262303 days ago (will be updated when >5 days) ## Update config/assembly_insdc-bioproject/config.yaml => output/tsv/assembly_insdc-bioproject.tsv -< 2024-11-22T21:53:48 assembly_insdc-bioproject +< 2024-11-29T21:37:19 assembly_insdc-bioproject togoid-config config/assembly_insdc-bioproject update # Success: output/tsv/assembly_insdc-bioproject.tsv is updated -> 2024-11-22T21:53:51 assembly_insdc-bioproject +> 2024-11-29T21:37:22 assembly_insdc-bioproject Rule for TSV (output/tsv/assembly_insdc-bioproject.tsv) ------------------------------ Investigating output/tsv/assembly_insdc-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 21:53:51 +0900 +timestamp: 2024-11-29 21:37:22 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for assembly_insdc-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-biosample.tsv is newer than config/assembly_insdc-biosample/config.yaml # File output/tsv/assembly_insdc-biosample.tsv has no timestamp file -# File output/tsv/assembly_insdc-biosample.tsv is created 6.778915806330335 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-biosample.tsv is created 6.98851601417721 days ago (will be updated when >5 days) ## Update config/assembly_insdc-biosample/config.yaml => output/tsv/assembly_insdc-biosample.tsv -< 2024-11-22T21:53:51 assembly_insdc-biosample +< 2024-11-29T21:37:22 assembly_insdc-biosample togoid-config config/assembly_insdc-biosample update # Success: output/tsv/assembly_insdc-biosample.tsv is updated -> 2024-11-22T21:53:54 assembly_insdc-biosample +> 2024-11-29T21:37:24 assembly_insdc-biosample Rule for TSV (output/tsv/assembly_insdc-biosample.tsv) ------------------------------ Investigating output/tsv/assembly_insdc-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 21:53:54 +0900 +timestamp: 2024-11-29 21:37:24 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for assembly_insdc-insdc_master if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-insdc_master.tsv is newer than config/assembly_insdc-insdc_master/config.yaml # File output/tsv/assembly_insdc-insdc_master.tsv has no timestamp file -# File output/tsv/assembly_insdc-insdc_master.tsv is created 6.778920663905139 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-insdc_master.tsv is created 6.988510531516967 days ago (will be updated when >5 days) ## Update config/assembly_insdc-insdc_master/config.yaml => output/tsv/assembly_insdc-insdc_master.tsv -< 2024-11-22T21:53:54 assembly_insdc-insdc_master +< 2024-11-29T21:37:24 assembly_insdc-insdc_master togoid-config config/assembly_insdc-insdc_master update # Success: output/tsv/assembly_insdc-insdc_master.tsv is updated -> 2024-11-22T21:53:57 assembly_insdc-insdc_master +> 2024-11-29T21:37:27 assembly_insdc-insdc_master Rule for TSV (output/tsv/assembly_insdc-insdc_master.tsv) ------------------------------ Investigating output/tsv/assembly_insdc-insdc_master.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 21:53:57 +0900 +timestamp: 2024-11-29 21:37:27 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for bioproject-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-biosample.tsv is newer than config/bioproject-biosample/config.yaml # File output/tsv/bioproject-biosample.tsv is older than input/bioproject/download.lock ## Update config/bioproject-biosample/config.yaml => output/tsv/bioproject-biosample.tsv -< 2024-11-22T21:53:57 bioproject-biosample +< 2024-11-29T21:37:27 bioproject-biosample togoid-config config/bioproject-biosample update # Success: output/tsv/bioproject-biosample.tsv is updated -> 2024-11-22T21:54:01 bioproject-biosample +> 2024-11-29T21:37:29 bioproject-biosample Rule for TSV (output/tsv/bioproject-biosample.tsv) ------------------------------ Investigating output/tsv/bioproject-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 21:54:01 +0900 +timestamp: 2024-11-29 21:37:29 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-11-22 21:54:01 +0900) -latest-prerequisite time: 2024-11-22 21:54:01 +0900 +--prepare:bioproject (2024-11-29 21:37:29 +0900) +latest-prerequisite time: 2024-11-29 21:37:29 +0900 ................................ ### Update TSV for bioproject-geo_series if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-geo_series.tsv is newer than config/bioproject-geo_series/config.yaml # File output/tsv/bioproject-geo_series.tsv is older than input/bioproject/download.lock ## Update config/bioproject-geo_series/config.yaml => output/tsv/bioproject-geo_series.tsv -< 2024-11-22T21:54:01 bioproject-geo_series +< 2024-11-29T21:37:29 bioproject-geo_series togoid-config config/bioproject-geo_series update # Success: output/tsv/bioproject-geo_series.tsv is updated -> 2024-11-22T21:54:03 bioproject-geo_series +> 2024-11-29T21:37:31 bioproject-geo_series Rule for TSV (output/tsv/bioproject-geo_series.tsv) ------------------------------ Investigating output/tsv/bioproject-geo_series.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 21:54:03 +0900 +timestamp: 2024-11-29 21:37:31 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-11-22 21:54:03 +0900) -latest-prerequisite time: 2024-11-22 21:54:03 +0900 +--prepare:bioproject (2024-11-29 21:37:31 +0900) +latest-prerequisite time: 2024-11-29 21:37:31 +0900 ................................ ### Update TSV for bioproject-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-pubmed.tsv is newer than config/bioproject-pubmed/config.yaml # File output/tsv/bioproject-pubmed.tsv is older than input/bioproject/download.lock ## Update config/bioproject-pubmed/config.yaml => output/tsv/bioproject-pubmed.tsv -< 2024-11-22T21:54:03 bioproject-pubmed +< 2024-11-29T21:37:31 bioproject-pubmed togoid-config config/bioproject-pubmed update # Success: output/tsv/bioproject-pubmed.tsv is updated -> 2024-11-22T21:54:04 bioproject-pubmed +> 2024-11-29T21:37:33 bioproject-pubmed Rule for TSV (output/tsv/bioproject-pubmed.tsv) ------------------------------ Investigating output/tsv/bioproject-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 21:54:04 +0900 +timestamp: 2024-11-29 21:37:33 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-11-22 21:54:04 +0900) -latest-prerequisite time: 2024-11-22 21:54:04 +0900 +--prepare:bioproject (2024-11-29 21:37:33 +0900) +latest-prerequisite time: 2024-11-29 21:37:33 +0900 ................................ ### Update TSV for bioproject_umbrella-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject_umbrella-bioproject.tsv is newer than config/bioproject_umbrella-bioproject/config.yaml # File output/tsv/bioproject_umbrella-bioproject.tsv has no timestamp file -# File output/tsv/bioproject_umbrella-bioproject.tsv is created 6.778957471176886 days ago (will be updated when >5 days) +# File output/tsv/bioproject_umbrella-bioproject.tsv is created 6.98851828574985 days ago (will be updated when >5 days) ## Update config/bioproject_umbrella-bioproject/config.yaml => output/tsv/bioproject_umbrella-bioproject.tsv -< 2024-11-22T21:54:04 bioproject_umbrella-bioproject +< 2024-11-29T21:37:33 bioproject_umbrella-bioproject togoid-config config/bioproject_umbrella-bioproject update # Success: output/tsv/bioproject_umbrella-bioproject.tsv is updated -> 2024-11-22T21:54:05 bioproject_umbrella-bioproject +> 2024-11-29T21:37:33 bioproject_umbrella-bioproject Rule for TSV (output/tsv/bioproject_umbrella-bioproject.tsv) ------------------------------ Investigating output/tsv/bioproject_umbrella-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 21:54:05 +0900 +timestamp: 2024-11-29 21:37:33 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-11-22 21:54:05 +0900) -latest-prerequisite time: 2024-11-22 21:54:05 +0900 +--prepare:bioproject (2024-11-29 21:37:33 +0900) +latest-prerequisite time: 2024-11-29 21:37:33 +0900 ................................ ### Update TSV for biosample-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/biosample-bioproject.tsv is newer than config/biosample-bioproject/config.yaml # File output/tsv/biosample-bioproject.tsv is older than input/biosample/download.lock ## Update config/biosample-bioproject/config.yaml => output/tsv/biosample-bioproject.tsv -< 2024-11-22T21:54:05 biosample-bioproject +< 2024-11-29T21:37:33 biosample-bioproject togoid-config config/biosample-bioproject update # Success: output/tsv/biosample-bioproject.tsv is updated -> 2024-11-22T21:55:22 biosample-bioproject +> 2024-11-29T21:39:01 biosample-bioproject Rule for TSV (output/tsv/biosample-bioproject.tsv) ------------------------------ Investigating output/tsv/biosample-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 21:55:22 +0900 +timestamp: 2024-11-29 21:39:01 +0900 pre-requisites: --output/tsv/ () ---prepare:biosample (2024-11-22 21:55:22 +0900) -latest-prerequisite time: 2024-11-22 21:55:22 +0900 +--prepare:biosample (2024-11-29 21:39:01 +0900) +latest-prerequisite time: 2024-11-29 21:39:01 +0900 ................................ ### Update TSV for biosample-geo_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/biosample-geo_sample.tsv is newer than config/biosample-geo_sample/config.yaml # File output/tsv/biosample-geo_sample.tsv is older than input/biosample/download.lock ## Update config/biosample-geo_sample/config.yaml => output/tsv/biosample-geo_sample.tsv -< 2024-11-22T21:55:22 biosample-geo_sample +< 2024-11-29T21:39:01 biosample-geo_sample togoid-config config/biosample-geo_sample update # Success: output/tsv/biosample-geo_sample.tsv is updated -> 2024-11-22T21:56:56 biosample-geo_sample +> 2024-11-29T21:40:34 biosample-geo_sample Rule for TSV (output/tsv/biosample-geo_sample.tsv) ------------------------------ Investigating output/tsv/biosample-geo_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 21:56:56 +0900 +timestamp: 2024-11-29 21:40:34 +0900 pre-requisites: --output/tsv/ () ---prepare:biosample (2024-11-22 21:56:56 +0900) -latest-prerequisite time: 2024-11-22 21:56:56 +0900 +--prepare:biosample (2024-11-29 21:40:34 +0900) +latest-prerequisite time: 2024-11-29 21:40:34 +0900 ................................ ### Update TSV for cellosaurus-ncit_disease if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -505,8 +501,8 @@ task needed: true timestamp: 2024-09-13 20:46:20 +0900 pre-requisites: --output/tsv/ () ---prepare:cellosaurus (2024-11-22 21:56:56 +0900) -latest-prerequisite time: 2024-11-22 21:56:56 +0900 +--prepare:cellosaurus (2024-11-29 21:40:34 +0900) +latest-prerequisite time: 2024-11-29 21:40:34 +0900 ................................ ### Update TSV for cellosaurus-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -521,271 +517,271 @@ task needed: true timestamp: 2024-09-13 20:46:24 +0900 pre-requisites: --output/tsv/ () ---prepare:cellosaurus (2024-11-22 21:56:56 +0900) -latest-prerequisite time: 2024-11-22 21:56:56 +0900 +--prepare:cellosaurus (2024-11-29 21:40:34 +0900) +latest-prerequisite time: 2024-11-29 21:40:34 +0900 ................................ ### Update TSV for chebi-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chebi-glytoucan.tsv is newer than config/chebi-glytoucan/config.yaml # File output/tsv/chebi-glytoucan.tsv has no timestamp file -# File output/tsv/chebi-glytoucan.tsv is created 6.778934947247293 days ago (will be updated when >5 days) +# File output/tsv/chebi-glytoucan.tsv is created 6.988604358797917 days ago (will be updated when >5 days) ## Update config/chebi-glytoucan/config.yaml => output/tsv/chebi-glytoucan.tsv -< 2024-11-22T21:56:57 chebi-glytoucan +< 2024-11-29T21:40:34 chebi-glytoucan togoid-config config/chebi-glytoucan update # Success: output/tsv/chebi-glytoucan.tsv is updated -> 2024-11-22T21:56:58 chebi-glytoucan +> 2024-11-29T21:40:34 chebi-glytoucan Rule for TSV (output/tsv/chebi-glytoucan.tsv) ------------------------------ Investigating output/tsv/chebi-glytoucan.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 21:56:58 +0900 +timestamp: 2024-11-29 21:40:34 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chebi-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chebi-inchi_key.tsv is newer than config/chebi-inchi_key/config.yaml # File output/tsv/chebi-inchi_key.tsv has no timestamp file -# File output/tsv/chebi-inchi_key.tsv is created 6.7789328270614 days ago (will be updated when >5 days) +# File output/tsv/chebi-inchi_key.tsv is created 6.98860121108728 days ago (will be updated when >5 days) ## Update config/chebi-inchi_key/config.yaml => output/tsv/chebi-inchi_key.tsv -< 2024-11-22T21:56:58 chebi-inchi_key +< 2024-11-29T21:40:34 chebi-inchi_key togoid-config config/chebi-inchi_key update # Success: output/tsv/chebi-inchi_key.tsv is updated -> 2024-11-22T21:56:59 chebi-inchi_key +> 2024-11-29T21:40:35 chebi-inchi_key Rule for TSV (output/tsv/chebi-inchi_key.tsv) ------------------------------ Investigating output/tsv/chebi-inchi_key.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 21:56:59 +0900 +timestamp: 2024-11-29 21:40:35 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_compound-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-chebi.tsv is newer than config/chembl_compound-chebi/config.yaml # File output/tsv/chembl_compound-chebi.tsv has no timestamp file -# File output/tsv/chembl_compound-chebi.tsv is created 6.778949847340857 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-chebi.tsv is created 6.988567484670242 days ago (will be updated when >5 days) ## Update config/chembl_compound-chebi/config.yaml => output/tsv/chembl_compound-chebi.tsv -< 2024-11-22T21:57:00 chembl_compound-chebi +< 2024-11-29T21:40:35 chembl_compound-chebi togoid-config config/chembl_compound-chebi update # Success: output/tsv/chembl_compound-chebi.tsv is updated -> 2024-11-22T21:57:02 chembl_compound-chebi +> 2024-11-29T21:40:35 chembl_compound-chebi Rule for TSV (output/tsv/chembl_compound-chebi.tsv) ------------------------------ Investigating output/tsv/chembl_compound-chebi.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 21:57:02 +0900 +timestamp: 2024-11-29 21:40:35 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_compound-chembl_target if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-chembl_target.tsv is newer than config/chembl_compound-chembl_target/config.yaml # File output/tsv/chembl_compound-chembl_target.tsv has no timestamp file -# File output/tsv/chembl_compound-chembl_target.tsv is created 6.767694442418923 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-chembl_target.tsv is created 6.977306696988888 days ago (will be updated when >5 days) ## Update config/chembl_compound-chembl_target/config.yaml => output/tsv/chembl_compound-chembl_target.tsv -< 2024-11-22T21:57:02 chembl_compound-chembl_target +< 2024-11-29T21:40:35 chembl_compound-chembl_target togoid-config config/chembl_compound-chembl_target update # Success: output/tsv/chembl_compound-chembl_target.tsv is updated -> 2024-11-22T22:13:16 chembl_compound-chembl_target +> 2024-11-29T21:56:41 chembl_compound-chembl_target Rule for TSV (output/tsv/chembl_compound-chembl_target.tsv) ------------------------------ Investigating output/tsv/chembl_compound-chembl_target.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:16 +0900 +timestamp: 2024-11-29 21:56:41 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_compound-drugbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-drugbank.tsv is newer than config/chembl_compound-drugbank/config.yaml # File output/tsv/chembl_compound-drugbank.tsv has no timestamp file -# File output/tsv/chembl_compound-drugbank.tsv is created 6.778956041366342 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-drugbank.tsv is created 6.988480871542523 days ago (will be updated when >5 days) ## Update config/chembl_compound-drugbank/config.yaml => output/tsv/chembl_compound-drugbank.tsv -< 2024-11-22T22:13:16 chembl_compound-drugbank +< 2024-11-29T21:56:41 chembl_compound-drugbank togoid-config config/chembl_compound-drugbank update # Success: output/tsv/chembl_compound-drugbank.tsv is updated -> 2024-11-22T22:13:16 chembl_compound-drugbank +> 2024-11-29T21:56:42 chembl_compound-drugbank Rule for TSV (output/tsv/chembl_compound-drugbank.tsv) ------------------------------ Investigating output/tsv/chembl_compound-drugbank.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:16 +0900 +timestamp: 2024-11-29 21:56:42 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_compound-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-hmdb.tsv is newer than config/chembl_compound-hmdb/config.yaml # File output/tsv/chembl_compound-hmdb.tsv has no timestamp file -# File output/tsv/chembl_compound-hmdb.tsv is created 6.7789583307945716 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-hmdb.tsv is created 6.9884810229453596 days ago (will be updated when >5 days) ## Update config/chembl_compound-hmdb/config.yaml => output/tsv/chembl_compound-hmdb.tsv -< 2024-11-22T22:13:16 chembl_compound-hmdb +< 2024-11-29T21:56:42 chembl_compound-hmdb togoid-config config/chembl_compound-hmdb update # Success: output/tsv/chembl_compound-hmdb.tsv is updated -> 2024-11-22T22:13:17 chembl_compound-hmdb +> 2024-11-29T21:56:42 chembl_compound-hmdb Rule for TSV (output/tsv/chembl_compound-hmdb.tsv) ------------------------------ Investigating output/tsv/chembl_compound-hmdb.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:17 +0900 +timestamp: 2024-11-29 21:56:42 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_compound-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-inchi_key.tsv is newer than config/chembl_compound-inchi_key/config.yaml # File output/tsv/chembl_compound-inchi_key.tsv has no timestamp file -# File output/tsv/chembl_compound-inchi_key.tsv is created 6.778914759461632 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-inchi_key.tsv is created 6.988431108680475 days ago (will be updated when >5 days) ## Update config/chembl_compound-inchi_key/config.yaml => output/tsv/chembl_compound-inchi_key.tsv -< 2024-11-22T22:13:17 chembl_compound-inchi_key +< 2024-11-29T21:56:42 chembl_compound-inchi_key togoid-config config/chembl_compound-inchi_key update # Success: output/tsv/chembl_compound-inchi_key.tsv is updated -> 2024-11-22T22:13:22 chembl_compound-inchi_key +> 2024-11-29T21:56:47 chembl_compound-inchi_key Rule for TSV (output/tsv/chembl_compound-inchi_key.tsv) ------------------------------ Investigating output/tsv/chembl_compound-inchi_key.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:22 +0900 +timestamp: 2024-11-29 21:56:47 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_compound-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-mesh.tsv is newer than config/chembl_compound-mesh/config.yaml # File output/tsv/chembl_compound-mesh.tsv has no timestamp file -# File output/tsv/chembl_compound-mesh.tsv is created 6.778965319958866 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-mesh.tsv is created 6.988474583464479 days ago (will be updated when >5 days) ## Update config/chembl_compound-mesh/config.yaml => output/tsv/chembl_compound-mesh.tsv -< 2024-11-22T22:13:22 chembl_compound-mesh +< 2024-11-29T21:56:47 chembl_compound-mesh togoid-config config/chembl_compound-mesh update # Success: output/tsv/chembl_compound-mesh.tsv is updated -> 2024-11-22T22:13:22 chembl_compound-mesh +> 2024-11-29T21:56:47 chembl_compound-mesh Rule for TSV (output/tsv/chembl_compound-mesh.tsv) ------------------------------ Investigating output/tsv/chembl_compound-mesh.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:22 +0900 +timestamp: 2024-11-29 21:56:47 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_compound-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pdb_ccd.tsv is newer than config/chembl_compound-pdb_ccd/config.yaml # File output/tsv/chembl_compound-pdb_ccd.tsv has no timestamp file -# File output/tsv/chembl_compound-pdb_ccd.tsv is created 6.778966798997014 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pdb_ccd.tsv is created 6.98847649624294 days ago (will be updated when >5 days) ## Update config/chembl_compound-pdb_ccd/config.yaml => output/tsv/chembl_compound-pdb_ccd.tsv -< 2024-11-22T22:13:22 chembl_compound-pdb_ccd +< 2024-11-29T21:56:47 chembl_compound-pdb_ccd togoid-config config/chembl_compound-pdb_ccd update # Success: output/tsv/chembl_compound-pdb_ccd.tsv is updated -> 2024-11-22T22:13:23 chembl_compound-pdb_ccd +> 2024-11-29T21:56:48 chembl_compound-pdb_ccd Rule for TSV (output/tsv/chembl_compound-pdb_ccd.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pdb_ccd.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:23 +0900 +timestamp: 2024-11-29 21:56:48 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_compound-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubchem_compound.tsv is newer than config/chembl_compound-pubchem_compound/config.yaml # File output/tsv/chembl_compound-pubchem_compound.tsv has no timestamp file -# File output/tsv/chembl_compound-pubchem_compound.tsv is created 6.778925573805487 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubchem_compound.tsv is created 6.988436573637303 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubchem_compound/config.yaml => output/tsv/chembl_compound-pubchem_compound.tsv -< 2024-11-22T22:13:23 chembl_compound-pubchem_compound +< 2024-11-29T21:56:48 chembl_compound-pubchem_compound togoid-config config/chembl_compound-pubchem_compound update # Success: output/tsv/chembl_compound-pubchem_compound.tsv is updated -> 2024-11-22T22:13:27 chembl_compound-pubchem_compound +> 2024-11-29T21:56:52 chembl_compound-pubchem_compound Rule for TSV (output/tsv/chembl_compound-pubchem_compound.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pubchem_compound.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:27 +0900 +timestamp: 2024-11-29 21:56:52 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_compound-pubchem_substance if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubchem_substance.tsv is newer than config/chembl_compound-pubchem_substance/config.yaml # File output/tsv/chembl_compound-pubchem_substance.tsv has no timestamp file -# File output/tsv/chembl_compound-pubchem_substance.tsv is created 6.778956971307558 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubchem_substance.tsv is created 6.988470794510648 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubchem_substance/config.yaml => output/tsv/chembl_compound-pubchem_substance.tsv -< 2024-11-22T22:13:27 chembl_compound-pubchem_substance +< 2024-11-29T21:56:52 chembl_compound-pubchem_substance togoid-config config/chembl_compound-pubchem_substance update # Success: output/tsv/chembl_compound-pubchem_substance.tsv is updated -> 2024-11-22T22:13:28 chembl_compound-pubchem_substance +> 2024-11-29T21:56:53 chembl_compound-pubchem_substance Rule for TSV (output/tsv/chembl_compound-pubchem_substance.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pubchem_substance.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:28 +0900 +timestamp: 2024-11-29 21:56:53 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_compound-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubmed.tsv is newer than config/chembl_compound-pubmed/config.yaml # File output/tsv/chembl_compound-pubmed.tsv has no timestamp file -# File output/tsv/chembl_compound-pubmed.tsv is created 6.778935967619177 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubmed.tsv is created 6.988453655590694 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubmed/config.yaml => output/tsv/chembl_compound-pubmed.tsv -< 2024-11-22T22:13:28 chembl_compound-pubmed +< 2024-11-29T21:56:53 chembl_compound-pubmed togoid-config config/chembl_compound-pubmed update # Success: output/tsv/chembl_compound-pubmed.tsv is updated -> 2024-11-22T22:13:30 chembl_compound-pubmed +> 2024-11-29T21:56:56 chembl_compound-pubmed Rule for TSV (output/tsv/chembl_compound-pubmed.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pubmed.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:30 +0900 +timestamp: 2024-11-29 21:56:56 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_target-ensembl_gene if check_tsv_filesize false or check_config_timestamp true or check_tsv_timestamp true # File output/tsv/chembl_target-ensembl_gene.tsv is older than config/chembl_target-ensembl_gene/config.yaml ## Update config/chembl_target-ensembl_gene/config.yaml => output/tsv/chembl_target-ensembl_gene.tsv -< 2024-11-22T22:13:30 chembl_target-ensembl_gene +< 2024-11-29T21:56:56 chembl_target-ensembl_gene togoid-config config/chembl_target-ensembl_gene update # Error: output/tsv/chembl_target-ensembl_gene.tsv new file size per old 0 / 61845 = 0.0 < 0.5 # Error: Failed to create output/tsv/chembl_target-ensembl_gene.tsv or created file was empty # Failure: output/tsv/chembl_target-ensembl_gene.tsv is not updated -> 2024-11-22T22:13:31 chembl_target-ensembl_gene +> 2024-11-29T21:56:56 chembl_target-ensembl_gene Rule for TSV (output/tsv/chembl_target-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/chembl_target-ensembl_gene.tsv @@ -794,294 +790,294 @@ task needed: true timestamp: 2023-08-25 17:59:01 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_target-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-go.tsv is newer than config/chembl_target-go/config.yaml # File output/tsv/chembl_target-go.tsv has no timestamp file -# File output/tsv/chembl_target-go.tsv is created 6.778962077792743 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-go.tsv is created 6.988481533391725 days ago (will be updated when >5 days) ## Update config/chembl_target-go/config.yaml => output/tsv/chembl_target-go.tsv -< 2024-11-22T22:13:31 chembl_target-go +< 2024-11-29T21:56:56 chembl_target-go togoid-config config/chembl_target-go update # Success: output/tsv/chembl_target-go.tsv is updated -> 2024-11-22T22:13:31 chembl_target-go +> 2024-11-29T21:56:57 chembl_target-go Rule for TSV (output/tsv/chembl_target-go.tsv) ------------------------------ Investigating output/tsv/chembl_target-go.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:31 +0900 +timestamp: 2024-11-29 21:56:57 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_target-interpro if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-interpro.tsv is newer than config/chembl_target-interpro/config.yaml # File output/tsv/chembl_target-interpro.tsv has no timestamp file -# File output/tsv/chembl_target-interpro.tsv is created 6.77895320595235 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-interpro.tsv is created 6.988480553652929 days ago (will be updated when >5 days) ## Update config/chembl_target-interpro/config.yaml => output/tsv/chembl_target-interpro.tsv -< 2024-11-22T22:13:31 chembl_target-interpro +< 2024-11-29T21:56:57 chembl_target-interpro togoid-config config/chembl_target-interpro update # Success: output/tsv/chembl_target-interpro.tsv is updated -> 2024-11-22T22:13:32 chembl_target-interpro +> 2024-11-29T21:56:57 chembl_target-interpro Rule for TSV (output/tsv/chembl_target-interpro.tsv) ------------------------------ Investigating output/tsv/chembl_target-interpro.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:32 +0900 +timestamp: 2024-11-29 21:56:57 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_target-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-pdb.tsv is newer than config/chembl_target-pdb/config.yaml # File output/tsv/chembl_target-pdb.tsv has no timestamp file -# File output/tsv/chembl_target-pdb.tsv is created 6.778953391358449 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-pdb.tsv is created 6.988480029271794 days ago (will be updated when >5 days) ## Update config/chembl_target-pdb/config.yaml => output/tsv/chembl_target-pdb.tsv -< 2024-11-22T22:13:32 chembl_target-pdb +< 2024-11-29T21:56:57 chembl_target-pdb togoid-config config/chembl_target-pdb update # Success: output/tsv/chembl_target-pdb.tsv is updated -> 2024-11-22T22:13:32 chembl_target-pdb +> 2024-11-29T21:56:57 chembl_target-pdb Rule for TSV (output/tsv/chembl_target-pdb.tsv) ------------------------------ Investigating output/tsv/chembl_target-pdb.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:32 +0900 +timestamp: 2024-11-29 21:56:57 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_target-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-pfam.tsv is newer than config/chembl_target-pfam/config.yaml # File output/tsv/chembl_target-pfam.tsv has no timestamp file -# File output/tsv/chembl_target-pfam.tsv is created 6.77895417342956 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-pfam.tsv is created 6.988479785506516 days ago (will be updated when >5 days) ## Update config/chembl_target-pfam/config.yaml => output/tsv/chembl_target-pfam.tsv -< 2024-11-22T22:13:32 chembl_target-pfam +< 2024-11-29T21:56:57 chembl_target-pfam togoid-config config/chembl_target-pfam update # Success: output/tsv/chembl_target-pfam.tsv is updated -> 2024-11-22T22:13:33 chembl_target-pfam +> 2024-11-29T21:56:58 chembl_target-pfam Rule for TSV (output/tsv/chembl_target-pfam.tsv) ------------------------------ Investigating output/tsv/chembl_target-pfam.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:33 +0900 +timestamp: 2024-11-29 21:56:58 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_target-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-reactome_pathway.tsv is newer than config/chembl_target-reactome_pathway/config.yaml # File output/tsv/chembl_target-reactome_pathway.tsv has no timestamp file -# File output/tsv/chembl_target-reactome_pathway.tsv is created 6.778954722247697 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-reactome_pathway.tsv is created 6.98847988175552 days ago (will be updated when >5 days) ## Update config/chembl_target-reactome_pathway/config.yaml => output/tsv/chembl_target-reactome_pathway.tsv -< 2024-11-22T22:13:33 chembl_target-reactome_pathway +< 2024-11-29T21:56:58 chembl_target-reactome_pathway togoid-config config/chembl_target-reactome_pathway update # Success: output/tsv/chembl_target-reactome_pathway.tsv is updated -> 2024-11-22T22:13:33 chembl_target-reactome_pathway +> 2024-11-29T21:56:58 chembl_target-reactome_pathway Rule for TSV (output/tsv/chembl_target-reactome_pathway.tsv) ------------------------------ Investigating output/tsv/chembl_target-reactome_pathway.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:33 +0900 +timestamp: 2024-11-29 21:56:58 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for chembl_target-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-uniprot.tsv is newer than config/chembl_target-uniprot/config.yaml # File output/tsv/chembl_target-uniprot.tsv has no timestamp file -# File output/tsv/chembl_target-uniprot.tsv is created 6.778953902603148 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-uniprot.tsv is created 6.988479033656886 days ago (will be updated when >5 days) ## Update config/chembl_target-uniprot/config.yaml => output/tsv/chembl_target-uniprot.tsv -< 2024-11-22T22:13:33 chembl_target-uniprot +< 2024-11-29T21:56:58 chembl_target-uniprot togoid-config config/chembl_target-uniprot update # Success: output/tsv/chembl_target-uniprot.tsv is updated -> 2024-11-22T22:13:34 chembl_target-uniprot +> 2024-11-29T21:56:59 chembl_target-uniprot Rule for TSV (output/tsv/chembl_target-uniprot.tsv) ------------------------------ Investigating output/tsv/chembl_target-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:13:34 +0900 +timestamp: 2024-11-29 21:56:59 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for clinvar-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-dbsnp.tsv is newer than config/clinvar-dbsnp/config.yaml # File output/tsv/clinvar-dbsnp.tsv is older than input/clinvar/download.lock ## Update config/clinvar-dbsnp/config.yaml => output/tsv/clinvar-dbsnp.tsv -< 2024-11-22T22:13:34 clinvar-dbsnp +< 2024-11-29T21:56:59 clinvar-dbsnp togoid-config config/clinvar-dbsnp update # Success: output/tsv/clinvar-dbsnp.tsv is updated -> 2024-11-22T22:14:12 clinvar-dbsnp +> 2024-11-29T21:57:37 clinvar-dbsnp Rule for TSV (output/tsv/clinvar-dbsnp.tsv) ------------------------------ Investigating output/tsv/clinvar-dbsnp.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:14:12 +0900 +timestamp: 2024-11-29 21:57:37 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-22 22:14:12 +0900) -latest-prerequisite time: 2024-11-22 22:14:12 +0900 +--prepare:clinvar (2024-11-29 21:57:37 +0900) +latest-prerequisite time: 2024-11-29 21:57:37 +0900 ................................ ### Update TSV for clinvar-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-hgnc.tsv is newer than config/clinvar-hgnc/config.yaml # File output/tsv/clinvar-hgnc.tsv is older than input/clinvar/download.lock ## Update config/clinvar-hgnc/config.yaml => output/tsv/clinvar-hgnc.tsv -< 2024-11-22T22:14:12 clinvar-hgnc +< 2024-11-29T21:57:37 clinvar-hgnc togoid-config config/clinvar-hgnc update # Success: output/tsv/clinvar-hgnc.tsv is updated -> 2024-11-22T22:15:05 clinvar-hgnc +> 2024-11-29T21:58:31 clinvar-hgnc Rule for TSV (output/tsv/clinvar-hgnc.tsv) ------------------------------ Investigating output/tsv/clinvar-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:15:05 +0900 +timestamp: 2024-11-29 21:58:31 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-22 22:15:05 +0900) -latest-prerequisite time: 2024-11-22 22:15:05 +0900 +--prepare:clinvar (2024-11-29 21:58:31 +0900) +latest-prerequisite time: 2024-11-29 21:58:31 +0900 ................................ ### Update TSV for clinvar-medgen if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-medgen.tsv is newer than config/clinvar-medgen/config.yaml # File output/tsv/clinvar-medgen.tsv is older than input/clinvar/download.lock ## Update config/clinvar-medgen/config.yaml => output/tsv/clinvar-medgen.tsv -< 2024-11-22T22:15:05 clinvar-medgen +< 2024-11-29T21:58:31 clinvar-medgen togoid-config config/clinvar-medgen update # Success: output/tsv/clinvar-medgen.tsv is updated -> 2024-11-22T22:16:39 clinvar-medgen +> 2024-11-29T22:00:05 clinvar-medgen Rule for TSV (output/tsv/clinvar-medgen.tsv) ------------------------------ Investigating output/tsv/clinvar-medgen.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:16:39 +0900 +timestamp: 2024-11-29 22:00:05 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-22 22:16:39 +0900) -latest-prerequisite time: 2024-11-22 22:16:39 +0900 +--prepare:clinvar (2024-11-29 22:00:05 +0900) +latest-prerequisite time: 2024-11-29 22:00:05 +0900 ................................ ### Update TSV for clinvar-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-mondo.tsv is newer than config/clinvar-mondo/config.yaml # File output/tsv/clinvar-mondo.tsv is older than input/clinvar/download.lock ## Update config/clinvar-mondo/config.yaml => output/tsv/clinvar-mondo.tsv -< 2024-11-22T22:16:39 clinvar-mondo +< 2024-11-29T22:00:05 clinvar-mondo togoid-config config/clinvar-mondo update # Success: output/tsv/clinvar-mondo.tsv is updated -> 2024-11-22T22:18:09 clinvar-mondo +> 2024-11-29T22:01:35 clinvar-mondo Rule for TSV (output/tsv/clinvar-mondo.tsv) ------------------------------ Investigating output/tsv/clinvar-mondo.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:18:09 +0900 +timestamp: 2024-11-29 22:01:35 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-22 22:18:09 +0900) -latest-prerequisite time: 2024-11-22 22:18:09 +0900 +--prepare:clinvar (2024-11-29 22:01:35 +0900) +latest-prerequisite time: 2024-11-29 22:01:35 +0900 ................................ ### Update TSV for clinvar-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-ncbigene.tsv is newer than config/clinvar-ncbigene/config.yaml # File output/tsv/clinvar-ncbigene.tsv is older than input/clinvar/download.lock ## Update config/clinvar-ncbigene/config.yaml => output/tsv/clinvar-ncbigene.tsv -< 2024-11-22T22:18:09 clinvar-ncbigene +< 2024-11-29T22:01:35 clinvar-ncbigene togoid-config config/clinvar-ncbigene update # Success: output/tsv/clinvar-ncbigene.tsv is updated -> 2024-11-22T22:19:01 clinvar-ncbigene +> 2024-11-29T22:02:28 clinvar-ncbigene Rule for TSV (output/tsv/clinvar-ncbigene.tsv) ------------------------------ Investigating output/tsv/clinvar-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:19:01 +0900 +timestamp: 2024-11-29 22:02:28 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-22 22:19:01 +0900) -latest-prerequisite time: 2024-11-22 22:19:01 +0900 +--prepare:clinvar (2024-11-29 22:02:28 +0900) +latest-prerequisite time: 2024-11-29 22:02:28 +0900 ................................ ### Update TSV for clinvar-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-omim_phenotype.tsv is newer than config/clinvar-omim_phenotype/config.yaml # File output/tsv/clinvar-omim_phenotype.tsv is older than input/clinvar/download.lock ## Update config/clinvar-omim_phenotype/config.yaml => output/tsv/clinvar-omim_phenotype.tsv -< 2024-11-22T22:19:01 clinvar-omim_phenotype +< 2024-11-29T22:02:28 clinvar-omim_phenotype togoid-config config/clinvar-omim_phenotype update # Success: output/tsv/clinvar-omim_phenotype.tsv is updated -> 2024-11-22T22:20:30 clinvar-omim_phenotype +> 2024-11-29T22:03:58 clinvar-omim_phenotype Rule for TSV (output/tsv/clinvar-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/clinvar-omim_phenotype.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:20:30 +0900 +timestamp: 2024-11-29 22:03:58 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-22 22:20:30 +0900) -latest-prerequisite time: 2024-11-22 22:20:30 +0900 +--prepare:clinvar (2024-11-29 22:03:58 +0900) +latest-prerequisite time: 2024-11-29 22:03:58 +0900 ................................ ### Update TSV for clinvar-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-orphanet_phenotype.tsv is newer than config/clinvar-orphanet_phenotype/config.yaml # File output/tsv/clinvar-orphanet_phenotype.tsv is older than input/clinvar/download.lock ## Update config/clinvar-orphanet_phenotype/config.yaml => output/tsv/clinvar-orphanet_phenotype.tsv -< 2024-11-22T22:20:30 clinvar-orphanet_phenotype +< 2024-11-29T22:03:58 clinvar-orphanet_phenotype togoid-config config/clinvar-orphanet_phenotype update # Success: output/tsv/clinvar-orphanet_phenotype.tsv is updated -> 2024-11-22T22:21:59 clinvar-orphanet_phenotype +> 2024-11-29T22:05:29 clinvar-orphanet_phenotype Rule for TSV (output/tsv/clinvar-orphanet_phenotype.tsv) ------------------------------ Investigating output/tsv/clinvar-orphanet_phenotype.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:21:59 +0900 +timestamp: 2024-11-29 22:05:29 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-22 22:21:59 +0900) -latest-prerequisite time: 2024-11-22 22:21:59 +0900 +--prepare:clinvar (2024-11-29 22:05:29 +0900) +latest-prerequisite time: 2024-11-29 22:05:29 +0900 ................................ ### Update TSV for clinvar-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-uniprot.tsv is newer than config/clinvar-uniprot/config.yaml # File output/tsv/clinvar-uniprot.tsv is older than input/clinvar/download.lock ## Update config/clinvar-uniprot/config.yaml => output/tsv/clinvar-uniprot.tsv -< 2024-11-22T22:21:59 clinvar-uniprot +< 2024-11-29T22:05:29 clinvar-uniprot togoid-config config/clinvar-uniprot update # Success: output/tsv/clinvar-uniprot.tsv is updated -> 2024-11-22T22:22:49 clinvar-uniprot +> 2024-11-29T22:06:19 clinvar-uniprot Rule for TSV (output/tsv/clinvar-uniprot.tsv) ------------------------------ Investigating output/tsv/clinvar-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:22:49 +0900 +timestamp: 2024-11-29 22:06:19 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-11-22 22:22:49 +0900) -latest-prerequisite time: 2024-11-22 22:22:49 +0900 +--prepare:clinvar (2024-11-29 22:06:19 +0900) +latest-prerequisite time: 2024-11-29 22:06:19 +0900 ................................ ### Update TSV for cog-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1096,8 +1092,8 @@ task needed: true timestamp: 2023-07-28 17:55:29 +0900 pre-requisites: --output/tsv/ () ---prepare:cog (2024-11-22 22:22:49 +0900) -latest-prerequisite time: 2024-11-22 22:22:49 +0900 +--prepare:cog (2024-11-29 22:06:19 +0900) +latest-prerequisite time: 2024-11-29 22:06:19 +0900 ................................ ### Update TSV for cog-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1112,163 +1108,163 @@ task needed: true timestamp: 2023-07-28 17:55:40 +0900 pre-requisites: --output/tsv/ () ---prepare:cog (2024-11-22 22:22:49 +0900) -latest-prerequisite time: 2024-11-22 22:22:49 +0900 +--prepare:cog (2024-11-29 22:06:19 +0900) +latest-prerequisite time: 2024-11-29 22:06:19 +0900 ................................ ### Update TSV for doid-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-mesh.tsv is newer than config/doid-mesh/config.yaml # File output/tsv/doid-mesh.tsv has no timestamp file -# File output/tsv/doid-mesh.tsv is created 6.7788558699325465 days ago (will be updated when >5 days) +# File output/tsv/doid-mesh.tsv is created 6.988530577507743 days ago (will be updated when >5 days) ## Update config/doid-mesh/config.yaml => output/tsv/doid-mesh.tsv -< 2024-11-22T22:22:49 doid-mesh +< 2024-11-29T22:06:19 doid-mesh togoid-config config/doid-mesh update # Success: output/tsv/doid-mesh.tsv is updated -> 2024-11-22T22:22:50 doid-mesh +> 2024-11-29T22:06:19 doid-mesh Rule for TSV (output/tsv/doid-mesh.tsv) ------------------------------ Investigating output/tsv/doid-mesh.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:22:50 +0900 +timestamp: 2024-11-29 22:06:19 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for doid-ncit_disease if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-ncit_disease.tsv is newer than config/doid-ncit_disease/config.yaml # File output/tsv/doid-ncit_disease.tsv has no timestamp file -# File output/tsv/doid-ncit_disease.tsv is created 6.778856584456076 days ago (will be updated when >5 days) +# File output/tsv/doid-ncit_disease.tsv is created 6.9885296821176155 days ago (will be updated when >5 days) ## Update config/doid-ncit_disease/config.yaml => output/tsv/doid-ncit_disease.tsv -< 2024-11-22T22:22:50 doid-ncit_disease +< 2024-11-29T22:06:19 doid-ncit_disease togoid-config config/doid-ncit_disease update # Success: output/tsv/doid-ncit_disease.tsv is updated -> 2024-11-22T22:22:50 doid-ncit_disease +> 2024-11-29T22:06:20 doid-ncit_disease Rule for TSV (output/tsv/doid-ncit_disease.tsv) ------------------------------ Investigating output/tsv/doid-ncit_disease.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:22:50 +0900 +timestamp: 2024-11-29 22:06:20 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for doid-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-omim_phenotype.tsv is newer than config/doid-omim_phenotype/config.yaml # File output/tsv/doid-omim_phenotype.tsv has no timestamp file -# File output/tsv/doid-omim_phenotype.tsv is created 6.778858118098032 days ago (will be updated when >5 days) +# File output/tsv/doid-omim_phenotype.tsv is created 6.988526988837025 days ago (will be updated when >5 days) ## Update config/doid-omim_phenotype/config.yaml => output/tsv/doid-omim_phenotype.tsv -< 2024-11-22T22:22:50 doid-omim_phenotype +< 2024-11-29T22:06:20 doid-omim_phenotype togoid-config config/doid-omim_phenotype update # Success: output/tsv/doid-omim_phenotype.tsv is updated -> 2024-11-22T22:22:51 doid-omim_phenotype +> 2024-11-29T22:06:20 doid-omim_phenotype Rule for TSV (output/tsv/doid-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/doid-omim_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:22:51 +0900 +timestamp: 2024-11-29 22:06:20 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for ensembl_gene-affy_probeset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-affy_probeset.tsv is newer than config/ensembl_gene-affy_probeset/config.yaml # File output/tsv/ensembl_gene-affy_probeset.tsv has no timestamp file -# File output/tsv/ensembl_gene-affy_probeset.tsv is created 6.778195383676713 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-affy_probeset.tsv is created 6.987983221120799 days ago (will be updated when >5 days) ## Update config/ensembl_gene-affy_probeset/config.yaml => output/tsv/ensembl_gene-affy_probeset.tsv -< 2024-11-22T22:22:51 ensembl_gene-affy_probeset +< 2024-11-29T22:06:20 ensembl_gene-affy_probeset togoid-config config/ensembl_gene-affy_probeset update # Success: output/tsv/ensembl_gene-affy_probeset.tsv is updated -> 2024-11-22T22:23:38 ensembl_gene-affy_probeset +> 2024-11-29T22:07:18 ensembl_gene-affy_probeset Rule for TSV (output/tsv/ensembl_gene-affy_probeset.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-affy_probeset.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:23:38 +0900 +timestamp: 2024-11-29 22:07:18 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-22 22:23:38 +0900) -latest-prerequisite time: 2024-11-22 22:23:38 +0900 +--prepare:ensembl (2024-11-29 22:07:18 +0900) +latest-prerequisite time: 2024-11-29 22:07:18 +0900 ................................ ### Update TSV for ensembl_gene-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ensembl_protein.tsv is newer than config/ensembl_gene-ensembl_protein/config.yaml # File output/tsv/ensembl_gene-ensembl_protein.tsv has no timestamp file -# File output/tsv/ensembl_gene-ensembl_protein.tsv is created 6.777486672460012 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ensembl_protein.tsv is created 6.987330367158911 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ensembl_protein/config.yaml => output/tsv/ensembl_gene-ensembl_protein.tsv -< 2024-11-22T22:23:40 ensembl_gene-ensembl_protein +< 2024-11-29T22:07:18 ensembl_gene-ensembl_protein togoid-config config/ensembl_gene-ensembl_protein update # Success: output/tsv/ensembl_gene-ensembl_protein.tsv is updated -> 2024-11-22T22:25:33 ensembl_gene-ensembl_protein +> 2024-11-29T22:09:07 ensembl_gene-ensembl_protein Rule for TSV (output/tsv/ensembl_gene-ensembl_protein.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-ensembl_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:25:33 +0900 +timestamp: 2024-11-29 22:09:07 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-22 22:25:33 +0900) -latest-prerequisite time: 2024-11-22 22:25:33 +0900 +--prepare:ensembl (2024-11-29 22:09:07 +0900) +latest-prerequisite time: 2024-11-29 22:09:07 +0900 ................................ ### Update TSV for ensembl_gene-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ensembl_transcript.tsv is newer than config/ensembl_gene-ensembl_transcript/config.yaml # File output/tsv/ensembl_gene-ensembl_transcript.tsv has no timestamp file -# File output/tsv/ensembl_gene-ensembl_transcript.tsv is created 6.777333646189896 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ensembl_transcript.tsv is created 6.98722025264647 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ensembl_transcript/config.yaml => output/tsv/ensembl_gene-ensembl_transcript.tsv -< 2024-11-22T22:25:33 ensembl_gene-ensembl_transcript +< 2024-11-29T22:09:07 ensembl_gene-ensembl_transcript togoid-config config/ensembl_gene-ensembl_transcript update # Success: output/tsv/ensembl_gene-ensembl_transcript.tsv is updated -> 2024-11-22T22:27:32 ensembl_gene-ensembl_transcript +> 2024-11-29T22:11:08 ensembl_gene-ensembl_transcript Rule for TSV (output/tsv/ensembl_gene-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:27:31 +0900 +timestamp: 2024-11-29 22:11:08 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-22 22:27:32 +0900) -latest-prerequisite time: 2024-11-22 22:27:32 +0900 +--prepare:ensembl (2024-11-29 22:11:08 +0900) +latest-prerequisite time: 2024-11-29 22:11:08 +0900 ................................ ### Update TSV for ensembl_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-hgnc.tsv is newer than config/ensembl_gene-hgnc/config.yaml # File output/tsv/ensembl_gene-hgnc.tsv has no timestamp file -# File output/tsv/ensembl_gene-hgnc.tsv is created 6.778705616416077 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-hgnc.tsv is created 6.988612417016852 days ago (will be updated when >5 days) ## Update config/ensembl_gene-hgnc/config.yaml => output/tsv/ensembl_gene-hgnc.tsv -< 2024-11-22T22:27:32 ensembl_gene-hgnc +< 2024-11-29T22:11:08 ensembl_gene-hgnc togoid-config config/ensembl_gene-hgnc update # Success: output/tsv/ensembl_gene-hgnc.tsv is updated -> 2024-11-22T22:27:32 ensembl_gene-hgnc +> 2024-11-29T22:11:09 ensembl_gene-hgnc Rule for TSV (output/tsv/ensembl_gene-hgnc.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:27:32 +0900 +timestamp: 2024-11-29 22:11:09 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-22 22:27:32 +0900) -latest-prerequisite time: 2024-11-22 22:27:32 +0900 +--prepare:ensembl (2024-11-29 22:11:09 +0900) +latest-prerequisite time: 2024-11-29 22:11:09 +0900 ................................ ### Update TSV for ensembl_gene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ncbigene.tsv is newer than config/ensembl_gene-ncbigene/config.yaml # File output/tsv/ensembl_gene-ncbigene.tsv has no timestamp file -# File output/tsv/ensembl_gene-ncbigene.tsv is created 6.777358451308669 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ncbigene.tsv is created 6.987283896559838 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ncbigene/config.yaml => output/tsv/ensembl_gene-ncbigene.tsv -< 2024-11-22T22:27:32 ensembl_gene-ncbigene +< 2024-11-29T22:11:09 ensembl_gene-ncbigene togoid-config config/ensembl_gene-ncbigene update Warning: Failed to retrieve taxon:8840 in loop_count:1 Warning: Failed to retrieve taxon:9771 in loop_count:1 @@ -1334,25 +1330,25 @@ Warning: Failed to retrieve taxon:99837 in loop_count:1 Warning: Failed to retrieve taxon:37032 in loop_count:1 Warning: Failed to retrieve taxon:181631 in loop_count:1 # Success: output/tsv/ensembl_gene-ncbigene.tsv is updated -> 2024-11-22T22:29:27 ensembl_gene-ncbigene +> 2024-11-29T22:13:06 ensembl_gene-ncbigene Rule for TSV (output/tsv/ensembl_gene-ncbigene.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:29:27 +0900 +timestamp: 2024-11-29 22:13:06 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-22 22:29:27 +0900) -latest-prerequisite time: 2024-11-22 22:29:27 +0900 +--prepare:ensembl (2024-11-29 22:13:06 +0900) +latest-prerequisite time: 2024-11-29 22:13:06 +0900 ................................ ### Update TSV for ensembl_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-uniprot.tsv is newer than config/ensembl_gene-uniprot/config.yaml # File output/tsv/ensembl_gene-uniprot.tsv has no timestamp file -# File output/tsv/ensembl_gene-uniprot.tsv is created 6.777733178044432 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-uniprot.tsv is created 6.987717807265637 days ago (will be updated when >5 days) ## Update config/ensembl_gene-uniprot/config.yaml => output/tsv/ensembl_gene-uniprot.tsv -< 2024-11-22T22:29:27 ensembl_gene-uniprot +< 2024-11-29T22:13:06 ensembl_gene-uniprot togoid-config config/ensembl_gene-uniprot update Warning: Failed to retrieve taxon:9771 in loop_count:1 Warning: Failed to retrieve taxon:8823 in loop_count:1 @@ -1411,109 +1407,109 @@ Warning: Failed to retrieve taxon:37032 in loop_count:1 Warning: Failed to retrieve taxon:181631 in loop_count:1 Warning: Failed to retrieve taxon:9999 in loop_count:1 # Success: output/tsv/ensembl_gene-uniprot.tsv is updated -> 2024-11-22T22:30:48 ensembl_gene-uniprot +> 2024-11-29T22:14:29 ensembl_gene-uniprot Rule for TSV (output/tsv/ensembl_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:30:48 +0900 +timestamp: 2024-11-29 22:14:29 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-22 22:30:48 +0900) -latest-prerequisite time: 2024-11-22 22:30:48 +0900 +--prepare:ensembl (2024-11-29 22:14:29 +0900) +latest-prerequisite time: 2024-11-29 22:14:29 +0900 ................................ ### Update TSV for ensembl_protein-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_protein-ensembl_transcript.tsv is newer than config/ensembl_protein-ensembl_transcript/config.yaml # File output/tsv/ensembl_protein-ensembl_transcript.tsv has no timestamp file -# File output/tsv/ensembl_protein-ensembl_transcript.tsv is created 6.777333747240892 days ago (will be updated when >5 days) +# File output/tsv/ensembl_protein-ensembl_transcript.tsv is created 6.987350867096285 days ago (will be updated when >5 days) ## Update config/ensembl_protein-ensembl_transcript/config.yaml => output/tsv/ensembl_protein-ensembl_transcript.tsv -< 2024-11-22T22:30:48 ensembl_protein-ensembl_transcript +< 2024-11-29T22:14:29 ensembl_protein-ensembl_transcript togoid-config config/ensembl_protein-ensembl_transcript update # Success: output/tsv/ensembl_protein-ensembl_transcript.tsv is updated -> 2024-11-22T22:32:42 ensembl_protein-ensembl_transcript +> 2024-11-29T22:16:26 ensembl_protein-ensembl_transcript Rule for TSV (output/tsv/ensembl_protein-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/ensembl_protein-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:32:42 +0900 +timestamp: 2024-11-29 22:16:26 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-22 22:32:42 +0900) -latest-prerequisite time: 2024-11-22 22:32:42 +0900 +--prepare:ensembl (2024-11-29 22:16:26 +0900) +latest-prerequisite time: 2024-11-29 22:16:26 +0900 ................................ ### Update TSV for ensembl_transcript-affy_probeset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-affy_probeset.tsv is newer than config/ensembl_transcript-affy_probeset/config.yaml # File output/tsv/ensembl_transcript-affy_probeset.tsv has no timestamp file -# File output/tsv/ensembl_transcript-affy_probeset.tsv is created 6.778022157002997 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-affy_probeset.tsv is created 6.988100108591401 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-affy_probeset/config.yaml => output/tsv/ensembl_transcript-affy_probeset.tsv -< 2024-11-22T22:32:42 ensembl_transcript-affy_probeset +< 2024-11-29T22:16:26 ensembl_transcript-affy_probeset togoid-config config/ensembl_transcript-affy_probeset update # Success: output/tsv/ensembl_transcript-affy_probeset.tsv is updated -> 2024-11-22T22:33:34 ensembl_transcript-affy_probeset +> 2024-11-29T22:17:25 ensembl_transcript-affy_probeset Rule for TSV (output/tsv/ensembl_transcript-affy_probeset.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-affy_probeset.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:33:34 +0900 +timestamp: 2024-11-29 22:17:25 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-22 22:33:34 +0900) -latest-prerequisite time: 2024-11-22 22:33:34 +0900 +--prepare:ensembl (2024-11-29 22:17:25 +0900) +latest-prerequisite time: 2024-11-29 22:17:25 +0900 ................................ ### Update TSV for ensembl_transcript-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-go.tsv is newer than config/ensembl_transcript-go/config.yaml # File output/tsv/ensembl_transcript-go.tsv has no timestamp file -# File output/tsv/ensembl_transcript-go.tsv is created 6.775809647514062 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-go.tsv is created 6.986111023932952 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-go/config.yaml => output/tsv/ensembl_transcript-go.tsv -< 2024-11-22T22:33:34 ensembl_transcript-go +< 2024-11-29T22:17:25 ensembl_transcript-go togoid-config config/ensembl_transcript-go update # Success: output/tsv/ensembl_transcript-go.tsv is updated -> 2024-11-22T22:37:25 ensembl_transcript-go +> 2024-11-29T22:21:35 ensembl_transcript-go Rule for TSV (output/tsv/ensembl_transcript-go.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:37:25 +0900 +timestamp: 2024-11-29 22:21:35 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-22 22:37:25 +0900) -latest-prerequisite time: 2024-11-22 22:37:25 +0900 +--prepare:ensembl (2024-11-29 22:21:35 +0900) +latest-prerequisite time: 2024-11-29 22:21:35 +0900 ................................ ### Update TSV for ensembl_transcript-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-hgnc.tsv is newer than config/ensembl_transcript-hgnc/config.yaml # File output/tsv/ensembl_transcript-hgnc.tsv has no timestamp file -# File output/tsv/ensembl_transcript-hgnc.tsv is created 6.778470711296181 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-hgnc.tsv is created 6.9889951862721755 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-hgnc/config.yaml => output/tsv/ensembl_transcript-hgnc.tsv -< 2024-11-22T22:37:25 ensembl_transcript-hgnc +< 2024-11-29T22:21:35 ensembl_transcript-hgnc togoid-config config/ensembl_transcript-hgnc update # Success: output/tsv/ensembl_transcript-hgnc.tsv is updated -> 2024-11-22T22:37:26 ensembl_transcript-hgnc +> 2024-11-29T22:21:36 ensembl_transcript-hgnc Rule for TSV (output/tsv/ensembl_transcript-hgnc.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:37:26 +0900 +timestamp: 2024-11-29 22:21:36 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-22 22:37:26 +0900) -latest-prerequisite time: 2024-11-22 22:37:26 +0900 +--prepare:ensembl (2024-11-29 22:21:36 +0900) +latest-prerequisite time: 2024-11-29 22:21:36 +0900 ................................ ### Update TSV for ensembl_transcript-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-refseq_rna.tsv is newer than config/ensembl_transcript-refseq_rna/config.yaml # File output/tsv/ensembl_transcript-refseq_rna.tsv has no timestamp file -# File output/tsv/ensembl_transcript-refseq_rna.tsv is created 6.776161715185695 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-refseq_rna.tsv is created 6.9867354723178 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-refseq_rna/config.yaml => output/tsv/ensembl_transcript-refseq_rna.tsv -< 2024-11-22T22:37:26 ensembl_transcript-refseq_rna +< 2024-11-29T22:21:36 ensembl_transcript-refseq_rna togoid-config config/ensembl_transcript-refseq_rna update Warning: Failed to retrieve taxon:8840 in loop_count:1 Warning: Failed to retrieve taxon:9771 in loop_count:1 @@ -1584,73 +1580,73 @@ Warning: Failed to retrieve taxon:99837 in loop_count:1 Warning: Failed to retrieve taxon:181631 in loop_count:1 Warning: Failed to retrieve taxon:99883 in loop_count:1 # Success: output/tsv/ensembl_transcript-refseq_rna.tsv is updated -> 2024-11-22T22:40:42 ensembl_transcript-refseq_rna +> 2024-11-29T22:25:01 ensembl_transcript-refseq_rna Rule for TSV (output/tsv/ensembl_transcript-refseq_rna.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-refseq_rna.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:40:42 +0900 +timestamp: 2024-11-29 22:25:01 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-11-22 22:40:42 +0900) -latest-prerequisite time: 2024-11-22 22:40:42 +0900 +--prepare:ensembl (2024-11-29 22:25:01 +0900) +latest-prerequisite time: 2024-11-29 22:25:01 +0900 ................................ ### Update TSV for gea-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/gea-bioproject.tsv is newer than config/gea-bioproject/config.yaml # File output/tsv/gea-bioproject.tsv has no timestamp file -# File output/tsv/gea-bioproject.tsv is created 6.778426644051204 days ago (will be updated when >5 days) +# File output/tsv/gea-bioproject.tsv is created 6.989108421862871 days ago (will be updated when >5 days) ## Update config/gea-bioproject/config.yaml => output/tsv/gea-bioproject.tsv -< 2024-11-22T22:40:42 gea-bioproject +< 2024-11-29T22:25:01 gea-bioproject togoid-config config/gea-bioproject update # Success: output/tsv/gea-bioproject.tsv is updated -> 2024-11-22T22:40:42 gea-bioproject +> 2024-11-29T22:25:02 gea-bioproject Rule for TSV (output/tsv/gea-bioproject.tsv) ------------------------------ Investigating output/tsv/gea-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:40:42 +0900 +timestamp: 2024-11-29 22:25:02 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for gea-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/gea-biosample.tsv is newer than config/gea-biosample/config.yaml # File output/tsv/gea-biosample.tsv has no timestamp file -# File output/tsv/gea-biosample.tsv is created 6.778426572638889 days ago (will be updated when >5 days) +# File output/tsv/gea-biosample.tsv is created 6.989102806950208 days ago (will be updated when >5 days) ## Update config/gea-biosample/config.yaml => output/tsv/gea-biosample.tsv -< 2024-11-22T22:40:42 gea-biosample +< 2024-11-29T22:25:02 gea-biosample togoid-config config/gea-biosample update # Success: output/tsv/gea-biosample.tsv is updated -> 2024-11-22T22:40:43 gea-biosample +> 2024-11-29T22:25:02 gea-biosample Rule for TSV (output/tsv/gea-biosample.tsv) ------------------------------ Investigating output/tsv/gea-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:40:43 +0900 +timestamp: 2024-11-29 22:25:02 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for glycomotif-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glycomotif-glytoucan.tsv is newer than config/glycomotif-glytoucan/config.yaml # File output/tsv/glycomotif-glytoucan.tsv has no timestamp file -# File output/tsv/glycomotif-glytoucan.tsv is created 98.05103828475077 days ago (will be updated when >5 days) +# File output/tsv/glycomotif-glytoucan.tsv is created 105.04014549203015 days ago (will be updated when >5 days) ## Update config/glycomotif-glytoucan/config.yaml => output/tsv/glycomotif-glytoucan.tsv -< 2024-11-22T22:40:43 glycomotif-glytoucan +< 2024-11-29T22:25:02 glycomotif-glytoucan togoid-config config/glycomotif-glytoucan update -Error: HTTP Error 500: Internal Server Error: https://api.alpha.glycosmos.org/partialmatch?wurcs=WURCS%3D2.0%2F4%2C11%2C10%2F%5Ba2122h-1b_1-5%5D%5Ba2112h-1b_1-5%5D%5Ba2122h-1b_1-5_2%2ANCC%2F3%3DO%5D%5Ba1221m-1a_1-5%5D%2F1-2-3-2-3-2-3-4-2-3-2%2Fa4-b1_b3-c1_c4-d1_d3-e1_e4-f1_f3-g1_g3-h1_g4-i1_i3-j1_j4-k1&rootnode=true G64227KZ +Error: HTTP Error 500: Internal Server Error: https://api.alpha.glycosmos.org/partialmatch?wurcs=WURCS%3D2.0%2F4%2C10%2C9%2F%5Ba2122h-1b_1-5%5D%5Ba2112h-1b_1-5%5D%5BAad21122h-2a_2-6_5%2ANCC%2F3%3DO%5D%5Ba2112h-1b_1-5_2%2ANCC%2F3%3DO%5D%2F1-2-3-3-3-4-2-3-3-3%2Fa4-b1_b3-c2_b4-f1_c8-d2_d8-e2_f3-g1_f6-j2_g3-h2_h8-i2&rootnode=true G14091MR # Error: output/tsv/glycomotif-glytoucan.tsv new file size per old 0 / 2804382 = 0.0 < 0.5 # Error: Failed to create output/tsv/glycomotif-glytoucan.tsv or created file was empty # Failure: output/tsv/glycomotif-glytoucan.tsv is not updated -> 2024-11-22T22:41:15 glycomotif-glytoucan +> 2024-11-29T22:25:39 glycomotif-glytoucan Rule for TSV (output/tsv/glycomotif-glytoucan.tsv) ------------------------------ Investigating output/tsv/glycomotif-glytoucan.tsv @@ -1659,19 +1655,19 @@ task needed: true timestamp: 2024-08-16 21:27:13 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for glytoucan-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-doid.tsv is newer than config/glytoucan-doid/config.yaml # File output/tsv/glytoucan-doid.tsv is older than input/glytoucan/download.lock ## Update config/glytoucan-doid/config.yaml => output/tsv/glytoucan-doid.tsv -< 2024-11-22T22:41:15 glytoucan-doid +< 2024-11-29T22:25:39 glytoucan-doid togoid-config config/glytoucan-doid update # Error: output/tsv/glytoucan-doid.tsv new file size per old 1538 / 4376 = 0.35146252285191953 < 0.5 # Failure: output/tsv/glytoucan-doid.tsv is not updated -> 2024-11-22T22:41:24 glytoucan-doid +> 2024-11-29T22:25:46 glytoucan-doid Rule for TSV (output/tsv/glytoucan-doid.tsv) ------------------------------ Investigating output/tsv/glytoucan-doid.tsv @@ -1680,58 +1676,58 @@ task needed: true timestamp: 2024-03-22 20:42:15 +0900 pre-requisites: --output/tsv/ () ---prepare:glytoucan (2024-11-22 22:41:24 +0900) -latest-prerequisite time: 2024-11-22 22:41:24 +0900 +--prepare:glytoucan (2024-11-29 22:25:46 +0900) +latest-prerequisite time: 2024-11-29 22:25:46 +0900 ................................ ### Update TSV for glytoucan-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-ncbigene.tsv is newer than config/glytoucan-ncbigene/config.yaml # File output/tsv/glytoucan-ncbigene.tsv is older than input/glytoucan/download.lock ## Update config/glytoucan-ncbigene/config.yaml => output/tsv/glytoucan-ncbigene.tsv -< 2024-11-22T22:41:24 glytoucan-ncbigene +< 2024-11-29T22:25:46 glytoucan-ncbigene togoid-config config/glytoucan-ncbigene update # Success: output/tsv/glytoucan-ncbigene.tsv is updated -> 2024-11-22T22:41:24 glytoucan-ncbigene +> 2024-11-29T22:25:47 glytoucan-ncbigene Rule for TSV (output/tsv/glytoucan-ncbigene.tsv) ------------------------------ Investigating output/tsv/glytoucan-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:24 +0900 +timestamp: 2024-11-29 22:25:47 +0900 pre-requisites: --output/tsv/ () ---prepare:glytoucan (2024-11-22 22:41:24 +0900) -latest-prerequisite time: 2024-11-22 22:41:24 +0900 +--prepare:glytoucan (2024-11-29 22:25:47 +0900) +latest-prerequisite time: 2024-11-29 22:25:47 +0900 ................................ ### Update TSV for glytoucan-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-uniprot.tsv is newer than config/glytoucan-uniprot/config.yaml # File output/tsv/glytoucan-uniprot.tsv is older than input/glytoucan/download.lock ## Update config/glytoucan-uniprot/config.yaml => output/tsv/glytoucan-uniprot.tsv -< 2024-11-22T22:41:24 glytoucan-uniprot +< 2024-11-29T22:25:47 glytoucan-uniprot togoid-config config/glytoucan-uniprot update # Success: output/tsv/glytoucan-uniprot.tsv is updated -> 2024-11-22T22:41:26 glytoucan-uniprot +> 2024-11-29T22:25:49 glytoucan-uniprot Rule for TSV (output/tsv/glytoucan-uniprot.tsv) ------------------------------ Investigating output/tsv/glytoucan-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:26 +0900 +timestamp: 2024-11-29 22:25:49 +0900 pre-requisites: --output/tsv/ () ---prepare:glytoucan (2024-11-22 22:41:26 +0900) -latest-prerequisite time: 2024-11-22 22:41:26 +0900 +--prepare:glytoucan (2024-11-29 22:25:49 +0900) +latest-prerequisite time: 2024-11-29 22:25:49 +0900 ................................ ### Update TSV for hgnc-ccds if check_tsv_filesize false or check_config_timestamp true or check_tsv_timestamp true # File output/tsv/hgnc-ccds.tsv is older than config/hgnc-ccds/config.yaml ## Update config/hgnc-ccds/config.yaml => output/tsv/hgnc-ccds.tsv -< 2024-11-22T22:41:26 hgnc-ccds +< 2024-11-29T22:25:49 hgnc-ccds togoid-config config/hgnc-ccds update # Error: output/tsv/hgnc-ccds.tsv new file size per old 252491 / 544502 = 0.46370995882476096 < 0.5 # Failure: output/tsv/hgnc-ccds.tsv is not updated -> 2024-11-22T22:41:27 hgnc-ccds +> 2024-11-29T22:25:49 hgnc-ccds Rule for TSV (output/tsv/hgnc-ccds.tsv) ------------------------------ Investigating output/tsv/hgnc-ccds.tsv @@ -1740,288 +1736,288 @@ task needed: true timestamp: 2024-08-16 21:27:23 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:27 +0900) -latest-prerequisite time: 2024-11-22 22:41:27 +0900 +--prepare:hgnc (2024-11-29 22:25:49 +0900) +latest-prerequisite time: 2024-11-29 22:25:49 +0900 ................................ ### Update TSV for hgnc-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ec.tsv is newer than config/hgnc-ec/config.yaml # File output/tsv/hgnc-ec.tsv is older than input/hgnc/download.lock ## Update config/hgnc-ec/config.yaml => output/tsv/hgnc-ec.tsv -< 2024-11-22T22:41:27 hgnc-ec +< 2024-11-29T22:25:49 hgnc-ec togoid-config config/hgnc-ec update # Success: output/tsv/hgnc-ec.tsv is updated -> 2024-11-22T22:41:27 hgnc-ec +> 2024-11-29T22:25:50 hgnc-ec Rule for TSV (output/tsv/hgnc-ec.tsv) ------------------------------ Investigating output/tsv/hgnc-ec.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:27 +0900 +timestamp: 2024-11-29 22:25:50 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:27 +0900) -latest-prerequisite time: 2024-11-22 22:41:27 +0900 +--prepare:hgnc (2024-11-29 22:25:50 +0900) +latest-prerequisite time: 2024-11-29 22:25:50 +0900 ................................ ### Update TSV for hgnc-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ensembl_gene.tsv is newer than config/hgnc-ensembl_gene/config.yaml # File output/tsv/hgnc-ensembl_gene.tsv is older than input/hgnc/download.lock ## Update config/hgnc-ensembl_gene/config.yaml => output/tsv/hgnc-ensembl_gene.tsv -< 2024-11-22T22:41:27 hgnc-ensembl_gene +< 2024-11-29T22:25:50 hgnc-ensembl_gene togoid-config config/hgnc-ensembl_gene update # Success: output/tsv/hgnc-ensembl_gene.tsv is updated -> 2024-11-22T22:41:28 hgnc-ensembl_gene +> 2024-11-29T22:25:50 hgnc-ensembl_gene Rule for TSV (output/tsv/hgnc-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/hgnc-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:28 +0900 +timestamp: 2024-11-29 22:25:50 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:28 +0900) -latest-prerequisite time: 2024-11-22 22:41:28 +0900 +--prepare:hgnc (2024-11-29 22:25:50 +0900) +latest-prerequisite time: 2024-11-29 22:25:50 +0900 ................................ ### Update TSV for hgnc-hgnc_symbol if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-hgnc_symbol.tsv is newer than config/hgnc-hgnc_symbol/config.yaml # File output/tsv/hgnc-hgnc_symbol.tsv is older than input/hgnc/download.lock ## Update config/hgnc-hgnc_symbol/config.yaml => output/tsv/hgnc-hgnc_symbol.tsv -< 2024-11-22T22:41:28 hgnc-hgnc_symbol +< 2024-11-29T22:25:50 hgnc-hgnc_symbol togoid-config config/hgnc-hgnc_symbol update # Success: output/tsv/hgnc-hgnc_symbol.tsv is updated -> 2024-11-22T22:41:28 hgnc-hgnc_symbol +> 2024-11-29T22:25:51 hgnc-hgnc_symbol Rule for TSV (output/tsv/hgnc-hgnc_symbol.tsv) ------------------------------ Investigating output/tsv/hgnc-hgnc_symbol.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:28 +0900 +timestamp: 2024-11-29 22:25:51 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:28 +0900) -latest-prerequisite time: 2024-11-22 22:41:28 +0900 +--prepare:hgnc (2024-11-29 22:25:51 +0900) +latest-prerequisite time: 2024-11-29 22:25:51 +0900 ................................ ### Update TSV for hgnc-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-insdc.tsv is newer than config/hgnc-insdc/config.yaml # File output/tsv/hgnc-insdc.tsv is older than input/hgnc/download.lock ## Update config/hgnc-insdc/config.yaml => output/tsv/hgnc-insdc.tsv -< 2024-11-22T22:41:28 hgnc-insdc +< 2024-11-29T22:25:51 hgnc-insdc togoid-config config/hgnc-insdc update # Success: output/tsv/hgnc-insdc.tsv is updated -> 2024-11-22T22:41:29 hgnc-insdc +> 2024-11-29T22:25:51 hgnc-insdc Rule for TSV (output/tsv/hgnc-insdc.tsv) ------------------------------ Investigating output/tsv/hgnc-insdc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:29 +0900 +timestamp: 2024-11-29 22:25:51 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:29 +0900) -latest-prerequisite time: 2024-11-22 22:41:29 +0900 +--prepare:hgnc (2024-11-29 22:25:51 +0900) +latest-prerequisite time: 2024-11-29 22:25:51 +0900 ................................ ### Update TSV for hgnc-lrg if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-lrg.tsv is newer than config/hgnc-lrg/config.yaml # File output/tsv/hgnc-lrg.tsv is older than input/hgnc/download.lock ## Update config/hgnc-lrg/config.yaml => output/tsv/hgnc-lrg.tsv -< 2024-11-22T22:41:29 hgnc-lrg +< 2024-11-29T22:25:51 hgnc-lrg togoid-config config/hgnc-lrg update # Success: output/tsv/hgnc-lrg.tsv is updated -> 2024-11-22T22:41:29 hgnc-lrg +> 2024-11-29T22:25:52 hgnc-lrg Rule for TSV (output/tsv/hgnc-lrg.tsv) ------------------------------ Investigating output/tsv/hgnc-lrg.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:29 +0900 +timestamp: 2024-11-29 22:25:52 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:29 +0900) -latest-prerequisite time: 2024-11-22 22:41:29 +0900 +--prepare:hgnc (2024-11-29 22:25:52 +0900) +latest-prerequisite time: 2024-11-29 22:25:52 +0900 ................................ ### Update TSV for hgnc-mgi_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-mgi_gene.tsv is newer than config/hgnc-mgi_gene/config.yaml # File output/tsv/hgnc-mgi_gene.tsv is older than input/hgnc/download.lock ## Update config/hgnc-mgi_gene/config.yaml => output/tsv/hgnc-mgi_gene.tsv -< 2024-11-22T22:41:29 hgnc-mgi_gene +< 2024-11-29T22:25:52 hgnc-mgi_gene togoid-config config/hgnc-mgi_gene update # Success: output/tsv/hgnc-mgi_gene.tsv is updated -> 2024-11-22T22:41:30 hgnc-mgi_gene +> 2024-11-29T22:25:52 hgnc-mgi_gene Rule for TSV (output/tsv/hgnc-mgi_gene.tsv) ------------------------------ Investigating output/tsv/hgnc-mgi_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:30 +0900 +timestamp: 2024-11-29 22:25:52 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:30 +0900) -latest-prerequisite time: 2024-11-22 22:41:30 +0900 +--prepare:hgnc (2024-11-29 22:25:52 +0900) +latest-prerequisite time: 2024-11-29 22:25:52 +0900 ................................ ### Update TSV for hgnc-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-mirbase.tsv is newer than config/hgnc-mirbase/config.yaml # File output/tsv/hgnc-mirbase.tsv is older than input/hgnc/download.lock ## Update config/hgnc-mirbase/config.yaml => output/tsv/hgnc-mirbase.tsv -< 2024-11-22T22:41:30 hgnc-mirbase +< 2024-11-29T22:25:52 hgnc-mirbase togoid-config config/hgnc-mirbase update # Success: output/tsv/hgnc-mirbase.tsv is updated -> 2024-11-22T22:41:30 hgnc-mirbase +> 2024-11-29T22:25:53 hgnc-mirbase Rule for TSV (output/tsv/hgnc-mirbase.tsv) ------------------------------ Investigating output/tsv/hgnc-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:30 +0900 +timestamp: 2024-11-29 22:25:53 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:30 +0900) -latest-prerequisite time: 2024-11-22 22:41:30 +0900 +--prepare:hgnc (2024-11-29 22:25:53 +0900) +latest-prerequisite time: 2024-11-29 22:25:53 +0900 ................................ ### Update TSV for hgnc-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ncbigene.tsv is newer than config/hgnc-ncbigene/config.yaml # File output/tsv/hgnc-ncbigene.tsv is older than input/hgnc/download.lock ## Update config/hgnc-ncbigene/config.yaml => output/tsv/hgnc-ncbigene.tsv -< 2024-11-22T22:41:30 hgnc-ncbigene +< 2024-11-29T22:25:53 hgnc-ncbigene togoid-config config/hgnc-ncbigene update # Success: output/tsv/hgnc-ncbigene.tsv is updated -> 2024-11-22T22:41:31 hgnc-ncbigene +> 2024-11-29T22:25:53 hgnc-ncbigene Rule for TSV (output/tsv/hgnc-ncbigene.tsv) ------------------------------ Investigating output/tsv/hgnc-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:31 +0900 +timestamp: 2024-11-29 22:25:53 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:31 +0900) -latest-prerequisite time: 2024-11-22 22:41:31 +0900 +--prepare:hgnc (2024-11-29 22:25:53 +0900) +latest-prerequisite time: 2024-11-29 22:25:53 +0900 ................................ ### Update TSV for hgnc-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-omim_gene.tsv is newer than config/hgnc-omim_gene/config.yaml # File output/tsv/hgnc-omim_gene.tsv is older than input/hgnc/download.lock ## Update config/hgnc-omim_gene/config.yaml => output/tsv/hgnc-omim_gene.tsv -< 2024-11-22T22:41:31 hgnc-omim_gene +< 2024-11-29T22:25:53 hgnc-omim_gene togoid-config config/hgnc-omim_gene update # Success: output/tsv/hgnc-omim_gene.tsv is updated -> 2024-11-22T22:41:31 hgnc-omim_gene +> 2024-11-29T22:25:54 hgnc-omim_gene Rule for TSV (output/tsv/hgnc-omim_gene.tsv) ------------------------------ Investigating output/tsv/hgnc-omim_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:31 +0900 +timestamp: 2024-11-29 22:25:54 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:31 +0900) -latest-prerequisite time: 2024-11-22 22:41:31 +0900 +--prepare:hgnc (2024-11-29 22:25:54 +0900) +latest-prerequisite time: 2024-11-29 22:25:54 +0900 ................................ ### Update TSV for hgnc-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-pubmed.tsv is newer than config/hgnc-pubmed/config.yaml # File output/tsv/hgnc-pubmed.tsv is older than input/hgnc/download.lock ## Update config/hgnc-pubmed/config.yaml => output/tsv/hgnc-pubmed.tsv -< 2024-11-22T22:41:31 hgnc-pubmed +< 2024-11-29T22:25:54 hgnc-pubmed togoid-config config/hgnc-pubmed update # Success: output/tsv/hgnc-pubmed.tsv is updated -> 2024-11-22T22:41:32 hgnc-pubmed +> 2024-11-29T22:25:55 hgnc-pubmed Rule for TSV (output/tsv/hgnc-pubmed.tsv) ------------------------------ Investigating output/tsv/hgnc-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:32 +0900 +timestamp: 2024-11-29 22:25:55 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:32 +0900) -latest-prerequisite time: 2024-11-22 22:41:32 +0900 +--prepare:hgnc (2024-11-29 22:25:55 +0900) +latest-prerequisite time: 2024-11-29 22:25:55 +0900 ................................ ### Update TSV for hgnc-refseq_genomic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-refseq_genomic.tsv is newer than config/hgnc-refseq_genomic/config.yaml # File output/tsv/hgnc-refseq_genomic.tsv is older than input/hgnc/download.lock ## Update config/hgnc-refseq_genomic/config.yaml => output/tsv/hgnc-refseq_genomic.tsv -< 2024-11-22T22:41:32 hgnc-refseq_genomic +< 2024-11-29T22:25:55 hgnc-refseq_genomic togoid-config config/hgnc-refseq_genomic update # Success: output/tsv/hgnc-refseq_genomic.tsv is updated -> 2024-11-22T22:41:33 hgnc-refseq_genomic +> 2024-11-29T22:25:55 hgnc-refseq_genomic Rule for TSV (output/tsv/hgnc-refseq_genomic.tsv) ------------------------------ Investigating output/tsv/hgnc-refseq_genomic.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:33 +0900 +timestamp: 2024-11-29 22:25:55 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:33 +0900) -latest-prerequisite time: 2024-11-22 22:41:33 +0900 +--prepare:hgnc (2024-11-29 22:25:55 +0900) +latest-prerequisite time: 2024-11-29 22:25:55 +0900 ................................ ### Update TSV for hgnc-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-refseq_rna.tsv is newer than config/hgnc-refseq_rna/config.yaml # File output/tsv/hgnc-refseq_rna.tsv is older than input/hgnc/download.lock ## Update config/hgnc-refseq_rna/config.yaml => output/tsv/hgnc-refseq_rna.tsv -< 2024-11-22T22:41:33 hgnc-refseq_rna +< 2024-11-29T22:25:55 hgnc-refseq_rna togoid-config config/hgnc-refseq_rna update # Success: output/tsv/hgnc-refseq_rna.tsv is updated -> 2024-11-22T22:41:33 hgnc-refseq_rna +> 2024-11-29T22:25:56 hgnc-refseq_rna Rule for TSV (output/tsv/hgnc-refseq_rna.tsv) ------------------------------ Investigating output/tsv/hgnc-refseq_rna.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:33 +0900 +timestamp: 2024-11-29 22:25:56 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:33 +0900) -latest-prerequisite time: 2024-11-22 22:41:33 +0900 +--prepare:hgnc (2024-11-29 22:25:56 +0900) +latest-prerequisite time: 2024-11-29 22:25:56 +0900 ................................ ### Update TSV for hgnc-rgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-rgd.tsv is newer than config/hgnc-rgd/config.yaml # File output/tsv/hgnc-rgd.tsv is older than input/hgnc/download.lock ## Update config/hgnc-rgd/config.yaml => output/tsv/hgnc-rgd.tsv -< 2024-11-22T22:41:33 hgnc-rgd +< 2024-11-29T22:25:56 hgnc-rgd togoid-config config/hgnc-rgd update # Success: output/tsv/hgnc-rgd.tsv is updated -> 2024-11-22T22:41:34 hgnc-rgd +> 2024-11-29T22:25:56 hgnc-rgd Rule for TSV (output/tsv/hgnc-rgd.tsv) ------------------------------ Investigating output/tsv/hgnc-rgd.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:34 +0900 +timestamp: 2024-11-29 22:25:56 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:34 +0900) -latest-prerequisite time: 2024-11-22 22:41:34 +0900 +--prepare:hgnc (2024-11-29 22:25:56 +0900) +latest-prerequisite time: 2024-11-29 22:25:56 +0900 ................................ ### Update TSV for hgnc-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-uniprot.tsv is newer than config/hgnc-uniprot/config.yaml # File output/tsv/hgnc-uniprot.tsv is older than input/hgnc/download.lock ## Update config/hgnc-uniprot/config.yaml => output/tsv/hgnc-uniprot.tsv -< 2024-11-22T22:41:34 hgnc-uniprot +< 2024-11-29T22:25:56 hgnc-uniprot togoid-config config/hgnc-uniprot update # Success: output/tsv/hgnc-uniprot.tsv is updated -> 2024-11-22T22:41:34 hgnc-uniprot +> 2024-11-29T22:25:57 hgnc-uniprot Rule for TSV (output/tsv/hgnc-uniprot.tsv) ------------------------------ Investigating output/tsv/hgnc-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:41:34 +0900 +timestamp: 2024-11-29 22:25:57 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-11-22 22:41:34 +0900) -latest-prerequisite time: 2024-11-22 22:41:34 +0900 +--prepare:hgnc (2024-11-29 22:25:57 +0900) +latest-prerequisite time: 2024-11-29 22:25:57 +0900 ................................ ### Update TSV for hmdb-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2036,8 +2032,8 @@ task needed: true timestamp: 2023-07-03 13:03:28 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-11-22 22:41:34 +0900) -latest-prerequisite time: 2024-11-22 22:41:34 +0900 +--prepare:hmdb (2024-11-29 22:25:57 +0900) +latest-prerequisite time: 2024-11-29 22:25:57 +0900 ................................ ### Update TSV for hmdb-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2052,8 +2048,8 @@ task needed: true timestamp: 2023-07-03 13:03:51 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-11-22 22:41:34 +0900) -latest-prerequisite time: 2024-11-22 22:41:34 +0900 +--prepare:hmdb (2024-11-29 22:25:57 +0900) +latest-prerequisite time: 2024-11-29 22:25:57 +0900 ................................ ### Update TSV for hmdb-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2068,8 +2064,8 @@ task needed: true timestamp: 2024-01-20 02:10:47 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-11-22 22:41:34 +0900) -latest-prerequisite time: 2024-11-22 22:41:34 +0900 +--prepare:hmdb (2024-11-29 22:25:57 +0900) +latest-prerequisite time: 2024-11-29 22:25:57 +0900 ................................ ### Update TSV for hmdb-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2084,8 +2080,8 @@ task needed: true timestamp: 2023-07-03 13:06:27 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-11-22 22:41:34 +0900) -latest-prerequisite time: 2024-11-22 22:41:34 +0900 +--prepare:hmdb (2024-11-29 22:25:57 +0900) +latest-prerequisite time: 2024-11-29 22:25:57 +0900 ................................ ### Update TSV for homologene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2100,29 +2096,29 @@ task needed: true timestamp: 2023-06-02 19:58:16 +0900 pre-requisites: --output/tsv/ () ---prepare:homologene (2024-11-22 22:41:34 +0900) -latest-prerequisite time: 2024-11-22 22:41:34 +0900 +--prepare:homologene (2024-11-29 22:25:57 +0900) +latest-prerequisite time: 2024-11-29 22:25:57 +0900 ................................ ### Update TSV for hp_inheritance-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hp_inheritance-omim_phenotype.tsv is newer than config/hp_inheritance-omim_phenotype/config.yaml # File output/tsv/hp_inheritance-omim_phenotype.tsv has no timestamp file -# File output/tsv/hp_inheritance-omim_phenotype.tsv is created 6.778464564551621 days ago (will be updated when >5 days) +# File output/tsv/hp_inheritance-omim_phenotype.tsv is created 6.98913759895434 days ago (will be updated when >5 days) ## Update config/hp_inheritance-omim_phenotype/config.yaml => output/tsv/hp_inheritance-omim_phenotype.tsv -< 2024-11-22T22:41:34 hp_inheritance-omim_phenotype +< 2024-11-29T22:25:57 hp_inheritance-omim_phenotype togoid-config config/hp_inheritance-omim_phenotype update # Success: output/tsv/hp_inheritance-omim_phenotype.tsv is updated -> 2024-11-22T22:41:35 hp_inheritance-omim_phenotype +> 2024-11-29T22:25:58 hp_inheritance-omim_phenotype Rule for TSV (output/tsv/hp_inheritance-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/hp_inheritance-omim_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:41:35 +0900 +timestamp: 2024-11-29 22:25:58 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for hp_phenotype-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2137,8 +2133,8 @@ task needed: true timestamp: 2024-08-16 21:27:32 +0900 pre-requisites: --output/tsv/ () ---prepare:hp_phenotype (2024-11-22 22:41:35 +0900) -latest-prerequisite time: 2024-11-22 22:41:35 +0900 +--prepare:hp_phenotype (2024-11-29 22:25:58 +0900) +latest-prerequisite time: 2024-11-29 22:25:58 +0900 ................................ ### Update TSV for hp_phenotype-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2153,311 +2149,339 @@ task needed: true timestamp: 2024-08-16 21:27:33 +0900 pre-requisites: --output/tsv/ () ---prepare:hp_phenotype (2024-11-22 22:41:35 +0900) -latest-prerequisite time: 2024-11-22 22:41:35 +0900 +--prepare:hp_phenotype (2024-11-29 22:25:58 +0900) +latest-prerequisite time: 2024-11-29 22:25:58 +0900 ................................ ### Update TSV for insdc-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc-bioproject.tsv is newer than config/insdc-bioproject/config.yaml # File output/tsv/insdc-bioproject.tsv has no timestamp file -# File output/tsv/insdc-bioproject.tsv is created 6.778156954874027 days ago (will be updated when >5 days) +# File output/tsv/insdc-bioproject.tsv is created 6.988832406886758 days ago (will be updated when >5 days) ## Update config/insdc-bioproject/config.yaml => output/tsv/insdc-bioproject.tsv -< 2024-11-22T22:41:35 insdc-bioproject +< 2024-11-29T22:25:58 insdc-bioproject togoid-config config/insdc-bioproject update # Success: output/tsv/insdc-bioproject.tsv is updated -> 2024-11-22T22:42:03 insdc-bioproject +> 2024-11-29T22:26:21 insdc-bioproject Rule for TSV (output/tsv/insdc-bioproject.tsv) ------------------------------ Investigating output/tsv/insdc-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:42:03 +0900 +timestamp: 2024-11-29 22:26:21 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for insdc-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc-biosample.tsv is newer than config/insdc-biosample/config.yaml # File output/tsv/insdc-biosample.tsv has no timestamp file -# File output/tsv/insdc-biosample.tsv is created 6.777488531344051 days ago (will be updated when >5 days) +# File output/tsv/insdc-biosample.tsv is created 6.9880862805328245 days ago (will be updated when >5 days) ## Update config/insdc-biosample/config.yaml => output/tsv/insdc-biosample.tsv -< 2024-11-22T22:42:03 insdc-biosample +< 2024-11-29T22:26:21 insdc-biosample togoid-config config/insdc-biosample update # Success: output/tsv/insdc-biosample.tsv is updated -> 2024-11-22T22:43:31 insdc-biosample +> 2024-11-29T22:27:36 insdc-biosample Rule for TSV (output/tsv/insdc-biosample.tsv) ------------------------------ Investigating output/tsv/insdc-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:43:31 +0900 +timestamp: 2024-11-29 22:27:36 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for insdc_master-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc_master-bioproject.tsv is newer than config/insdc_master-bioproject/config.yaml # File output/tsv/insdc_master-bioproject.tsv has no timestamp file -# File output/tsv/insdc_master-bioproject.tsv is created 6.7784854632629745 days ago (will be updated when >5 days) +# File output/tsv/insdc_master-bioproject.tsv is created 6.988938430766586 days ago (will be updated when >5 days) ## Update config/insdc_master-bioproject/config.yaml => output/tsv/insdc_master-bioproject.tsv -< 2024-11-22T22:43:31 insdc_master-bioproject +< 2024-11-29T22:27:36 insdc_master-bioproject togoid-config config/insdc_master-bioproject update # Success: output/tsv/insdc_master-bioproject.tsv is updated -> 2024-11-22T22:43:32 insdc_master-bioproject +> 2024-11-29T22:27:38 insdc_master-bioproject Rule for TSV (output/tsv/insdc_master-bioproject.tsv) ------------------------------ Investigating output/tsv/insdc_master-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:43:32 +0900 +timestamp: 2024-11-29 22:27:38 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for insdc_master-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc_master-biosample.tsv is newer than config/insdc_master-biosample/config.yaml # File output/tsv/insdc_master-biosample.tsv has no timestamp file -# File output/tsv/insdc_master-biosample.tsv is created 6.778484922489236 days ago (will be updated when >5 days) +# File output/tsv/insdc_master-biosample.tsv is created 6.98892989919522 days ago (will be updated when >5 days) ## Update config/insdc_master-biosample/config.yaml => output/tsv/insdc_master-biosample.tsv -< 2024-11-22T22:43:32 insdc_master-biosample +< 2024-11-29T22:27:38 insdc_master-biosample togoid-config config/insdc_master-biosample update # Success: output/tsv/insdc_master-biosample.tsv is updated -> 2024-11-22T22:43:34 insdc_master-biosample +> 2024-11-29T22:27:39 insdc_master-biosample Rule for TSV (output/tsv/insdc_master-biosample.tsv) ------------------------------ Investigating output/tsv/insdc_master-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:43:34 +0900 +timestamp: 2024-11-29 22:27:39 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ -### Update TSV for interpro-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-go.tsv is newer than config/interpro-go/config.yaml -# File output/tsv/interpro-go.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-go.tsv +# File output/tsv/interpro-go.tsv is older than input/interpro/download.lock +## Update config/interpro-go/config.yaml => output/tsv/interpro-go.tsv +< 2024-11-29T22:27:39 interpro-go +togoid-config config/interpro-go update +# Success: output/tsv/interpro-go.tsv is updated +> 2024-11-29T22:27:40 interpro-go Rule for TSV (output/tsv/interpro-go.tsv) ------------------------------ Investigating output/tsv/interpro-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-06 20:21:42 +0900 +timestamp: 2024-11-29 22:27:40 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-22 22:43:34 +0900) -latest-prerequisite time: 2024-11-22 22:43:34 +0900 +--prepare:interpro (2024-11-29 22:27:40 +0900) +latest-prerequisite time: 2024-11-29 22:27:40 +0900 ................................ -### Update TSV for interpro-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-pdb.tsv is newer than config/interpro-pdb/config.yaml -# File output/tsv/interpro-pdb.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-pdb.tsv +# File output/tsv/interpro-pdb.tsv is older than input/interpro/download.lock +## Update config/interpro-pdb/config.yaml => output/tsv/interpro-pdb.tsv +< 2024-11-29T22:27:40 interpro-pdb +togoid-config config/interpro-pdb update +# Success: output/tsv/interpro-pdb.tsv is updated +> 2024-11-29T22:27:43 interpro-pdb Rule for TSV (output/tsv/interpro-pdb.tsv) ------------------------------ Investigating output/tsv/interpro-pdb.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-06 20:21:44 +0900 +timestamp: 2024-11-29 22:27:43 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-22 22:43:34 +0900) -latest-prerequisite time: 2024-11-22 22:43:34 +0900 +--prepare:interpro (2024-11-29 22:27:43 +0900) +latest-prerequisite time: 2024-11-29 22:27:43 +0900 ................................ -### Update TSV for interpro-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-pfam.tsv is newer than config/interpro-pfam/config.yaml -# File output/tsv/interpro-pfam.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-pfam.tsv +# File output/tsv/interpro-pfam.tsv is older than input/interpro/download.lock +## Update config/interpro-pfam/config.yaml => output/tsv/interpro-pfam.tsv +< 2024-11-29T22:27:43 interpro-pfam +togoid-config config/interpro-pfam update +# Success: output/tsv/interpro-pfam.tsv is updated +> 2024-11-29T22:27:44 interpro-pfam Rule for TSV (output/tsv/interpro-pfam.tsv) ------------------------------ Investigating output/tsv/interpro-pfam.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-06 20:21:46 +0900 +timestamp: 2024-11-29 22:27:44 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-22 22:43:34 +0900) -latest-prerequisite time: 2024-11-22 22:43:34 +0900 +--prepare:interpro (2024-11-29 22:27:44 +0900) +latest-prerequisite time: 2024-11-29 22:27:44 +0900 ................................ -### Update TSV for interpro-prosite if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-prosite if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-prosite.tsv is newer than config/interpro-prosite/config.yaml -# File output/tsv/interpro-prosite.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-prosite.tsv +# File output/tsv/interpro-prosite.tsv is older than input/interpro/download.lock +## Update config/interpro-prosite/config.yaml => output/tsv/interpro-prosite.tsv +< 2024-11-29T22:27:44 interpro-prosite +togoid-config config/interpro-prosite update +# Success: output/tsv/interpro-prosite.tsv is updated +> 2024-11-29T22:27:46 interpro-prosite Rule for TSV (output/tsv/interpro-prosite.tsv) ------------------------------ Investigating output/tsv/interpro-prosite.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-06 20:21:47 +0900 +timestamp: 2024-11-29 22:27:46 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-22 22:43:34 +0900) -latest-prerequisite time: 2024-11-22 22:43:34 +0900 +--prepare:interpro (2024-11-29 22:27:46 +0900) +latest-prerequisite time: 2024-11-29 22:27:46 +0900 ................................ -### Update TSV for interpro-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-pubmed.tsv is newer than config/interpro-pubmed/config.yaml -# File output/tsv/interpro-pubmed.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-pubmed.tsv +# File output/tsv/interpro-pubmed.tsv is older than input/interpro/download.lock +## Update config/interpro-pubmed/config.yaml => output/tsv/interpro-pubmed.tsv +< 2024-11-29T22:27:46 interpro-pubmed +togoid-config config/interpro-pubmed update +# Success: output/tsv/interpro-pubmed.tsv is updated +> 2024-11-29T22:27:48 interpro-pubmed Rule for TSV (output/tsv/interpro-pubmed.tsv) ------------------------------ Investigating output/tsv/interpro-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-06 20:21:49 +0900 +timestamp: 2024-11-29 22:27:48 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-22 22:43:34 +0900) -latest-prerequisite time: 2024-11-22 22:43:34 +0900 +--prepare:interpro (2024-11-29 22:27:48 +0900) +latest-prerequisite time: 2024-11-29 22:27:48 +0900 ................................ -### Update TSV for interpro-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-reactome_pathway.tsv is newer than config/interpro-reactome_pathway/config.yaml -# File output/tsv/interpro-reactome_pathway.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-reactome_pathway.tsv +# File output/tsv/interpro-reactome_pathway.tsv is older than input/interpro/download.lock +## Update config/interpro-reactome_pathway/config.yaml => output/tsv/interpro-reactome_pathway.tsv +< 2024-11-29T22:27:48 interpro-reactome_pathway +togoid-config config/interpro-reactome_pathway update +# Success: output/tsv/interpro-reactome_pathway.tsv is updated +> 2024-11-29T22:27:50 interpro-reactome_pathway Rule for TSV (output/tsv/interpro-reactome_pathway.tsv) ------------------------------ Investigating output/tsv/interpro-reactome_pathway.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-06 20:21:51 +0900 +timestamp: 2024-11-29 22:27:50 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-22 22:43:34 +0900) -latest-prerequisite time: 2024-11-22 22:43:34 +0900 +--prepare:interpro (2024-11-29 22:27:50 +0900) +latest-prerequisite time: 2024-11-29 22:27:50 +0900 ................................ -### Update TSV for interpro-smart if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-smart if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-smart.tsv is newer than config/interpro-smart/config.yaml -# File output/tsv/interpro-smart.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-smart.tsv +# File output/tsv/interpro-smart.tsv is older than input/interpro/download.lock +## Update config/interpro-smart/config.yaml => output/tsv/interpro-smart.tsv +< 2024-11-29T22:27:50 interpro-smart +togoid-config config/interpro-smart update +# Success: output/tsv/interpro-smart.tsv is updated +> 2024-11-29T22:27:51 interpro-smart Rule for TSV (output/tsv/interpro-smart.tsv) ------------------------------ Investigating output/tsv/interpro-smart.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-06 20:21:53 +0900 +timestamp: 2024-11-29 22:27:51 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-22 22:43:34 +0900) -latest-prerequisite time: 2024-11-22 22:43:34 +0900 +--prepare:interpro (2024-11-29 22:27:51 +0900) +latest-prerequisite time: 2024-11-29 22:27:51 +0900 ................................ -### Update TSV for interpro-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-uniprot.tsv is newer than config/interpro-uniprot/config.yaml -# File output/tsv/interpro-uniprot.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-uniprot.tsv +# File output/tsv/interpro-uniprot.tsv is older than input/interpro/download.lock +## Update config/interpro-uniprot/config.yaml => output/tsv/interpro-uniprot.tsv +< 2024-11-29T22:27:51 interpro-uniprot +togoid-config config/interpro-uniprot update +# Success: output/tsv/interpro-uniprot.tsv is updated +> 2024-11-30T02:23:51 interpro-uniprot Rule for TSV (output/tsv/interpro-uniprot.tsv) ------------------------------ Investigating output/tsv/interpro-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 00:10:25 +0900 +timestamp: 2024-11-30 02:23:51 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-11-22 22:43:34 +0900) -latest-prerequisite time: 2024-11-22 22:43:34 +0900 +--prepare:interpro (2024-11-30 02:23:51 +0900) +latest-prerequisite time: 2024-11-30 02:23:51 +0900 ................................ ### Update TSV for jga_study-jga_dataset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-jga_dataset.tsv is newer than config/jga_study-jga_dataset/config.yaml # File output/tsv/jga_study-jga_dataset.tsv has no timestamp file -# File output/tsv/jga_study-jga_dataset.tsv is created 6.778505033430359 days ago (will be updated when >5 days) +# File output/tsv/jga_study-jga_dataset.tsv is created 7.152973840421725 days ago (will be updated when >5 days) ## Update config/jga_study-jga_dataset/config.yaml => output/tsv/jga_study-jga_dataset.tsv -< 2024-11-22T22:43:34 jga_study-jga_dataset +< 2024-11-30T02:23:52 jga_study-jga_dataset togoid-config config/jga_study-jga_dataset update # Success: output/tsv/jga_study-jga_dataset.tsv is updated -> 2024-11-22T22:43:35 jga_study-jga_dataset +> 2024-11-30T02:23:52 jga_study-jga_dataset Rule for TSV (output/tsv/jga_study-jga_dataset.tsv) ------------------------------ Investigating output/tsv/jga_study-jga_dataset.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:43:35 +0900 +timestamp: 2024-11-30 02:23:52 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for jga_study-nbdc_human_db if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-nbdc_human_db.tsv is newer than config/jga_study-nbdc_human_db/config.yaml # File output/tsv/jga_study-nbdc_human_db.tsv has no timestamp file -# File output/tsv/jga_study-nbdc_human_db.tsv is created 6.7785028336430315 days ago (will be updated when >5 days) +# File output/tsv/jga_study-nbdc_human_db.tsv is created 7.152976455983195 days ago (will be updated when >5 days) ## Update config/jga_study-nbdc_human_db/config.yaml => output/tsv/jga_study-nbdc_human_db.tsv -< 2024-11-22T22:43:35 jga_study-nbdc_human_db +< 2024-11-30T02:23:52 jga_study-nbdc_human_db togoid-config config/jga_study-nbdc_human_db update # Success: output/tsv/jga_study-nbdc_human_db.tsv is updated -> 2024-11-22T22:43:35 jga_study-nbdc_human_db +> 2024-11-30T02:23:53 jga_study-nbdc_human_db Rule for TSV (output/tsv/jga_study-nbdc_human_db.tsv) ------------------------------ Investigating output/tsv/jga_study-nbdc_human_db.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:43:35 +0900 +timestamp: 2024-11-30 02:23:53 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for jga_study-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-pubmed.tsv is newer than config/jga_study-pubmed/config.yaml # File output/tsv/jga_study-pubmed.tsv has no timestamp file -# File output/tsv/jga_study-pubmed.tsv is created 6.778504543312802 days ago (will be updated when >5 days) +# File output/tsv/jga_study-pubmed.tsv is created 7.152976621913392 days ago (will be updated when >5 days) ## Update config/jga_study-pubmed/config.yaml => output/tsv/jga_study-pubmed.tsv -< 2024-11-22T22:43:35 jga_study-pubmed +< 2024-11-30T02:23:53 jga_study-pubmed togoid-config config/jga_study-pubmed update # Success: output/tsv/jga_study-pubmed.tsv is updated -> 2024-11-22T22:43:36 jga_study-pubmed +> 2024-11-30T02:23:53 jga_study-pubmed Rule for TSV (output/tsv/jga_study-pubmed.tsv) ------------------------------ Investigating output/tsv/jga_study-pubmed.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:43:36 +0900 +timestamp: 2024-11-30 02:23:53 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for lipidmaps-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-chebi.tsv is newer than config/lipidmaps-chebi/config.yaml # File output/tsv/lipidmaps-chebi.tsv has no timestamp file -# File output/tsv/lipidmaps-chebi.tsv is created 62.760265291576665 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-chebi.tsv is created 69.91324634008855 days ago (will be updated when >5 days) ## Update config/lipidmaps-chebi/config.yaml => output/tsv/lipidmaps-chebi.tsv -< 2024-11-22T22:43:36 lipidmaps-chebi +< 2024-11-30T02:23:53 lipidmaps-chebi togoid-config config/lipidmaps-chebi update -# Error: output/tsv/lipidmaps-chebi.tsv new file size per old 248 / 253350 = 0.0009788829682257747 < 0.5 +# Error: output/tsv/lipidmaps-chebi.tsv new file size per old 148 / 253350 = 0.000584172093941188 < 0.5 # Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML 503 Service Unavailable +# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML 403 Forbidden # Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

Service Unavailable

-# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

The server is temporarily unable to service your -# Error: output/tsv/lipidmaps-chebi.tsv seems to be malformed request due to maintenance downtime or capacity -# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML problems. Please try again later.

+# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

Forbidden

+# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

You don't have permission to access this resource.

# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML # Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML 503 Service Unavailable +# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML 403 Forbidden # Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

Service Unavailable

-# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

The server is temporarily unable to service your -# Error: output/tsv/lipidmaps-chebi.tsv seems to be malformed request due to maintenance downtime or capacity -# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML problems. Please try again later.

+# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

Forbidden

+# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML

You don't have permission to access this resource.

# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML # Failure: output/tsv/lipidmaps-chebi.tsv is not updated -> 2024-11-22T22:43:37 lipidmaps-chebi +> 2024-11-30T02:23:56 lipidmaps-chebi Rule for TSV (output/tsv/lipidmaps-chebi.tsv) ------------------------------ Investigating output/tsv/lipidmaps-chebi.tsv @@ -2466,36 +2490,32 @@ task needed: true timestamp: 2024-09-21 04:28:49 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for lipidmaps-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-inchi_key.tsv is newer than config/lipidmaps-inchi_key/config.yaml # File output/tsv/lipidmaps-inchi_key.tsv has no timestamp file -# File output/tsv/lipidmaps-inchi_key.tsv is created 62.76024235230744 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-inchi_key.tsv is created 69.9132350993355 days ago (will be updated when >5 days) ## Update config/lipidmaps-inchi_key/config.yaml => output/tsv/lipidmaps-inchi_key.tsv -< 2024-11-22T22:43:37 lipidmaps-inchi_key +< 2024-11-30T02:23:56 lipidmaps-inchi_key togoid-config config/lipidmaps-inchi_key update -# Error: output/tsv/lipidmaps-inchi_key.tsv new file size per old 248 / 1976727 = 0.0001254599142926666 < 0.5 +# Error: output/tsv/lipidmaps-inchi_key.tsv new file size per old 148 / 1976727 = 7.487123917465588e-05 < 0.5 # Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML 503 Service Unavailable +# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML 403 Forbidden # Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

Service Unavailable

-# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

The server is temporarily unable to service your -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to be malformed request due to maintenance downtime or capacity -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML problems. Please try again later.

+# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

Forbidden

+# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

You don't have permission to access this resource.

# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML # Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML 503 Service Unavailable +# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML 403 Forbidden # Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

Service Unavailable

-# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

The server is temporarily unable to service your -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to be malformed request due to maintenance downtime or capacity -# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML problems. Please try again later.

+# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

Forbidden

+# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML

You don't have permission to access this resource.

# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML # Failure: output/tsv/lipidmaps-inchi_key.tsv is not updated -> 2024-11-22T22:43:39 lipidmaps-inchi_key +> 2024-11-30T02:23:57 lipidmaps-inchi_key Rule for TSV (output/tsv/lipidmaps-inchi_key.tsv) ------------------------------ Investigating output/tsv/lipidmaps-inchi_key.tsv @@ -2504,36 +2524,32 @@ task needed: true timestamp: 2024-09-21 04:28:53 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for lipidmaps-swisslipids if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-swisslipids.tsv is newer than config/lipidmaps-swisslipids/config.yaml # File output/tsv/lipidmaps-swisslipids.tsv has no timestamp file -# File output/tsv/lipidmaps-swisslipids.tsv is created 62.760223496436296 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-swisslipids.tsv is created 69.91321618132838 days ago (will be updated when >5 days) ## Update config/lipidmaps-swisslipids/config.yaml => output/tsv/lipidmaps-swisslipids.tsv -< 2024-11-22T22:43:39 lipidmaps-swisslipids +< 2024-11-30T02:23:57 lipidmaps-swisslipids togoid-config config/lipidmaps-swisslipids update -# Error: output/tsv/lipidmaps-swisslipids.tsv new file size per old 248 / 284047 = 0.0008730949455547849 < 0.5 +# Error: output/tsv/lipidmaps-swisslipids.tsv new file size per old 148 / 284047 = 0.0005210405320246297 < 0.5 # Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML 503 Service Unavailable +# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML 403 Forbidden # Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

Service Unavailable

-# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

The server is temporarily unable to service your -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to be malformed request due to maintenance downtime or capacity -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML problems. Please try again later.

+# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

Forbidden

+# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

You don't have permission to access this resource.

# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML # Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML 503 Service Unavailable +# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML 403 Forbidden # Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

Service Unavailable

-# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

The server is temporarily unable to service your -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to be malformed request due to maintenance downtime or capacity -# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML problems. Please try again later.

+# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

Forbidden

+# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML

You don't have permission to access this resource.

# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML # Failure: output/tsv/lipidmaps-swisslipids.tsv is not updated -> 2024-11-22T22:43:40 lipidmaps-swisslipids +> 2024-11-30T02:23:59 lipidmaps-swisslipids Rule for TSV (output/tsv/lipidmaps-swisslipids.tsv) ------------------------------ Investigating output/tsv/lipidmaps-swisslipids.tsv @@ -2542,21 +2558,21 @@ task needed: true timestamp: 2024-09-21 04:28:56 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for mbgd_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mbgd_gene-uniprot.tsv is newer than config/mbgd_gene-uniprot/config.yaml # File output/tsv/mbgd_gene-uniprot.tsv has no timestamp file -# File output/tsv/mbgd_gene-uniprot.tsv is created 35.02466040315127 days ago (will be updated when >5 days) +# File output/tsv/mbgd_gene-uniprot.tsv is created 42.17765217920259 days ago (will be updated when >5 days) ## Update config/mbgd_gene-uniprot/config.yaml => output/tsv/mbgd_gene-uniprot.tsv -< 2024-11-22T22:43:40 mbgd_gene-uniprot +< 2024-11-30T02:23:59 mbgd_gene-uniprot togoid-config config/mbgd_gene-uniprot update # Error: output/tsv/mbgd_gene-uniprot.tsv new file size per old 0 / 4017692184 = 0.0 < 0.5 # Error: Failed to create output/tsv/mbgd_gene-uniprot.tsv or created file was empty # Failure: output/tsv/mbgd_gene-uniprot.tsv is not updated -> 2024-11-22T22:43:44 mbgd_gene-uniprot +> 2024-11-30T02:24:02 mbgd_gene-uniprot Rule for TSV (output/tsv/mbgd_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/mbgd_gene-uniprot.tsv @@ -2565,21 +2581,21 @@ task needed: true timestamp: 2024-10-18 22:08:10 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for mbgd_organism-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mbgd_organism-taxonomy.tsv is newer than config/mbgd_organism-taxonomy/config.yaml # File output/tsv/mbgd_organism-taxonomy.tsv has no timestamp file -# File output/tsv/mbgd_organism-taxonomy.tsv is created 35.024696220151874 days ago (will be updated when >5 days) +# File output/tsv/mbgd_organism-taxonomy.tsv is created 42.17768663793415 days ago (will be updated when >5 days) ## Update config/mbgd_organism-taxonomy/config.yaml => output/tsv/mbgd_organism-taxonomy.tsv -< 2024-11-22T22:43:44 mbgd_organism-taxonomy +< 2024-11-30T02:24:02 mbgd_organism-taxonomy togoid-config config/mbgd_organism-taxonomy update # Error: output/tsv/mbgd_organism-taxonomy.tsv new file size per old 0 / 81445 = 0.0 < 0.5 # Error: Failed to create output/tsv/mbgd_organism-taxonomy.tsv or created file was empty # Failure: output/tsv/mbgd_organism-taxonomy.tsv is not updated -> 2024-11-22T22:43:47 mbgd_organism-taxonomy +> 2024-11-30T02:24:05 mbgd_organism-taxonomy Rule for TSV (output/tsv/mbgd_organism-taxonomy.tsv) ------------------------------ Investigating output/tsv/mbgd_organism-taxonomy.tsv @@ -2588,307 +2604,307 @@ task needed: true timestamp: 2024-10-18 22:08:10 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for medgen-hp_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-hp_phenotype.tsv is newer than config/medgen-hp_phenotype/config.yaml # File output/tsv/medgen-hp_phenotype.tsv has no timestamp file -# File output/tsv/medgen-hp_phenotype.tsv is created 6.778494415975961 days ago (will be updated when >5 days) +# File output/tsv/medgen-hp_phenotype.tsv is created 7.152985264202118 days ago (will be updated when >5 days) ## Update config/medgen-hp_phenotype/config.yaml => output/tsv/medgen-hp_phenotype.tsv -< 2024-11-22T22:43:47 medgen-hp_phenotype +< 2024-11-30T02:24:05 medgen-hp_phenotype togoid-config config/medgen-hp_phenotype update # Success: output/tsv/medgen-hp_phenotype.tsv is updated -> 2024-11-22T22:43:47 medgen-hp_phenotype +> 2024-11-30T02:24:10 medgen-hp_phenotype Rule for TSV (output/tsv/medgen-hp_phenotype.tsv) ------------------------------ Investigating output/tsv/medgen-hp_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:43:47 +0900 +timestamp: 2024-11-30 02:24:10 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for medgen-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-mesh.tsv is newer than config/medgen-mesh/config.yaml # File output/tsv/medgen-mesh.tsv has no timestamp file -# File output/tsv/medgen-mesh.tsv is created 6.7784945039133095 days ago (will be updated when >5 days) +# File output/tsv/medgen-mesh.tsv is created 7.153032905746551 days ago (will be updated when >5 days) ## Update config/medgen-mesh/config.yaml => output/tsv/medgen-mesh.tsv -< 2024-11-22T22:43:47 medgen-mesh +< 2024-11-30T02:24:10 medgen-mesh togoid-config config/medgen-mesh update # Success: output/tsv/medgen-mesh.tsv is updated -> 2024-11-22T22:43:48 medgen-mesh +> 2024-11-30T02:24:12 medgen-mesh Rule for TSV (output/tsv/medgen-mesh.tsv) ------------------------------ Investigating output/tsv/medgen-mesh.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:43:48 +0900 +timestamp: 2024-11-30 02:24:12 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for medgen-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-mondo.tsv is newer than config/medgen-mondo/config.yaml # File output/tsv/medgen-mondo.tsv has no timestamp file -# File output/tsv/medgen-mondo.tsv is created 6.778493891375312 days ago (will be updated when >5 days) +# File output/tsv/medgen-mondo.tsv is created 7.153055667515822 days ago (will be updated when >5 days) ## Update config/medgen-mondo/config.yaml => output/tsv/medgen-mondo.tsv -< 2024-11-22T22:43:48 medgen-mondo +< 2024-11-30T02:24:12 medgen-mondo togoid-config config/medgen-mondo update # Success: output/tsv/medgen-mondo.tsv is updated -> 2024-11-22T22:43:48 medgen-mondo +> 2024-11-30T02:24:13 medgen-mondo Rule for TSV (output/tsv/medgen-mondo.tsv) ------------------------------ Investigating output/tsv/medgen-mondo.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:43:48 +0900 +timestamp: 2024-11-30 02:24:13 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for medgen-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-ncbigene.tsv is newer than config/medgen-ncbigene/config.yaml # File output/tsv/medgen-ncbigene.tsv has no timestamp file -# File output/tsv/medgen-ncbigene.tsv is created 6.778495330531239 days ago (will be updated when >5 days) +# File output/tsv/medgen-ncbigene.tsv is created 7.153064357958867 days ago (will be updated when >5 days) ## Update config/medgen-ncbigene/config.yaml => output/tsv/medgen-ncbigene.tsv -< 2024-11-22T22:43:48 medgen-ncbigene +< 2024-11-30T02:24:13 medgen-ncbigene togoid-config config/medgen-ncbigene update # Success: output/tsv/medgen-ncbigene.tsv is updated -> 2024-11-22T22:43:49 medgen-ncbigene +> 2024-11-30T02:24:14 medgen-ncbigene Rule for TSV (output/tsv/medgen-ncbigene.tsv) ------------------------------ Investigating output/tsv/medgen-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:43:49 +0900 +timestamp: 2024-11-30 02:24:14 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for medgen-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-omim_phenotype.tsv is newer than config/medgen-omim_phenotype/config.yaml # File output/tsv/medgen-omim_phenotype.tsv has no timestamp file -# File output/tsv/medgen-omim_phenotype.tsv is created 6.7784947203955435 days ago (will be updated when >5 days) +# File output/tsv/medgen-omim_phenotype.tsv is created 7.153068016765486 days ago (will be updated when >5 days) ## Update config/medgen-omim_phenotype/config.yaml => output/tsv/medgen-omim_phenotype.tsv -< 2024-11-22T22:43:49 medgen-omim_phenotype +< 2024-11-30T02:24:14 medgen-omim_phenotype togoid-config config/medgen-omim_phenotype update # Success: output/tsv/medgen-omim_phenotype.tsv is updated -> 2024-11-22T22:43:49 medgen-omim_phenotype +> 2024-11-30T02:24:15 medgen-omim_phenotype Rule for TSV (output/tsv/medgen-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/medgen-omim_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:43:49 +0900 +timestamp: 2024-11-30 02:24:15 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for medgen-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-orphanet_phenotype.tsv is newer than config/medgen-orphanet_phenotype/config.yaml # File output/tsv/medgen-orphanet_phenotype.tsv has no timestamp file -# File output/tsv/medgen-orphanet_phenotype.tsv is created 6.778494555290879 days ago (will be updated when >5 days) +# File output/tsv/medgen-orphanet_phenotype.tsv is created 7.153075547689514 days ago (will be updated when >5 days) ## Update config/medgen-orphanet_phenotype/config.yaml => output/tsv/medgen-orphanet_phenotype.tsv -< 2024-11-22T22:43:49 medgen-orphanet_phenotype +< 2024-11-30T02:24:15 medgen-orphanet_phenotype togoid-config config/medgen-orphanet_phenotype update # Success: output/tsv/medgen-orphanet_phenotype.tsv is updated -> 2024-11-22T22:43:49 medgen-orphanet_phenotype +> 2024-11-30T02:24:16 medgen-orphanet_phenotype Rule for TSV (output/tsv/medgen-orphanet_phenotype.tsv) ------------------------------ Investigating output/tsv/medgen-orphanet_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:43:49 +0900 +timestamp: 2024-11-30 02:24:16 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for mgi_gene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-ensembl_gene.tsv is newer than config/mgi_gene-ensembl_gene/config.yaml # File output/tsv/mgi_gene-ensembl_gene.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-ensembl_gene/config.yaml => output/tsv/mgi_gene-ensembl_gene.tsv -< 2024-11-22T22:43:49 mgi_gene-ensembl_gene +< 2024-11-30T02:24:16 mgi_gene-ensembl_gene togoid-config config/mgi_gene-ensembl_gene update # Success: output/tsv/mgi_gene-ensembl_gene.tsv is updated -> 2024-11-22T22:43:50 mgi_gene-ensembl_gene +> 2024-11-30T02:24:16 mgi_gene-ensembl_gene Rule for TSV (output/tsv/mgi_gene-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/mgi_gene-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:43:50 +0900 +timestamp: 2024-11-30 02:24:16 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-11-22 22:43:50 +0900) -latest-prerequisite time: 2024-11-22 22:43:50 +0900 +--prepare:mgi_gene (2024-11-30 02:24:16 +0900) +latest-prerequisite time: 2024-11-30 02:24:16 +0900 ................................ ### Update TSV for mgi_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-hgnc.tsv is newer than config/mgi_gene-hgnc/config.yaml # File output/tsv/mgi_gene-hgnc.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-hgnc/config.yaml => output/tsv/mgi_gene-hgnc.tsv -< 2024-11-22T22:43:50 mgi_gene-hgnc +< 2024-11-30T02:24:16 mgi_gene-hgnc togoid-config config/mgi_gene-hgnc update # Success: output/tsv/mgi_gene-hgnc.tsv is updated -> 2024-11-22T22:43:51 mgi_gene-hgnc +> 2024-11-30T02:24:17 mgi_gene-hgnc Rule for TSV (output/tsv/mgi_gene-hgnc.tsv) ------------------------------ Investigating output/tsv/mgi_gene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:43:51 +0900 +timestamp: 2024-11-30 02:24:17 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-11-22 22:43:51 +0900) -latest-prerequisite time: 2024-11-22 22:43:51 +0900 +--prepare:mgi_gene (2024-11-30 02:24:17 +0900) +latest-prerequisite time: 2024-11-30 02:24:17 +0900 ................................ ### Update TSV for mgi_gene-mgi_allele if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-mgi_allele.tsv is newer than config/mgi_gene-mgi_allele/config.yaml # File output/tsv/mgi_gene-mgi_allele.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-mgi_allele/config.yaml => output/tsv/mgi_gene-mgi_allele.tsv -< 2024-11-22T22:43:51 mgi_gene-mgi_allele +< 2024-11-30T02:24:17 mgi_gene-mgi_allele togoid-config config/mgi_gene-mgi_allele update # Success: output/tsv/mgi_gene-mgi_allele.tsv is updated -> 2024-11-22T22:43:52 mgi_gene-mgi_allele +> 2024-11-30T02:24:18 mgi_gene-mgi_allele Rule for TSV (output/tsv/mgi_gene-mgi_allele.tsv) ------------------------------ Investigating output/tsv/mgi_gene-mgi_allele.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:43:52 +0900 +timestamp: 2024-11-30 02:24:18 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-11-22 22:43:52 +0900) -latest-prerequisite time: 2024-11-22 22:43:52 +0900 +--prepare:mgi_gene (2024-11-30 02:24:18 +0900) +latest-prerequisite time: 2024-11-30 02:24:18 +0900 ................................ ### Update TSV for mgi_gene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-ncbigene.tsv is newer than config/mgi_gene-ncbigene/config.yaml # File output/tsv/mgi_gene-ncbigene.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-ncbigene/config.yaml => output/tsv/mgi_gene-ncbigene.tsv -< 2024-11-22T22:43:52 mgi_gene-ncbigene +< 2024-11-30T02:24:18 mgi_gene-ncbigene togoid-config config/mgi_gene-ncbigene update # Success: output/tsv/mgi_gene-ncbigene.tsv is updated -> 2024-11-22T22:43:53 mgi_gene-ncbigene +> 2024-11-30T02:24:19 mgi_gene-ncbigene Rule for TSV (output/tsv/mgi_gene-ncbigene.tsv) ------------------------------ Investigating output/tsv/mgi_gene-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:43:52 +0900 +timestamp: 2024-11-30 02:24:19 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-11-22 22:43:53 +0900) -latest-prerequisite time: 2024-11-22 22:43:53 +0900 +--prepare:mgi_gene (2024-11-30 02:24:19 +0900) +latest-prerequisite time: 2024-11-30 02:24:19 +0900 ................................ ### Update TSV for mgi_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-uniprot.tsv is newer than config/mgi_gene-uniprot/config.yaml # File output/tsv/mgi_gene-uniprot.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-uniprot/config.yaml => output/tsv/mgi_gene-uniprot.tsv -< 2024-11-22T22:43:53 mgi_gene-uniprot +< 2024-11-30T02:24:19 mgi_gene-uniprot togoid-config config/mgi_gene-uniprot update # Success: output/tsv/mgi_gene-uniprot.tsv is updated -> 2024-11-22T22:43:53 mgi_gene-uniprot +> 2024-11-30T02:24:19 mgi_gene-uniprot Rule for TSV (output/tsv/mgi_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/mgi_gene-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:43:53 +0900 +timestamp: 2024-11-30 02:24:19 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-11-22 22:43:53 +0900) -latest-prerequisite time: 2024-11-22 22:43:53 +0900 +--prepare:mgi_gene (2024-11-30 02:24:19 +0900) +latest-prerequisite time: 2024-11-30 02:24:19 +0900 ................................ ### Update TSV for mgi_genotype-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-doid.tsv is newer than config/mgi_genotype-doid/config.yaml # File output/tsv/mgi_genotype-doid.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-doid/config.yaml => output/tsv/mgi_genotype-doid.tsv -< 2024-11-22T22:43:53 mgi_genotype-doid +< 2024-11-30T02:24:19 mgi_genotype-doid togoid-config config/mgi_genotype-doid update # Success: output/tsv/mgi_genotype-doid.tsv is updated -> 2024-11-22T22:43:55 mgi_genotype-doid +> 2024-11-30T02:24:21 mgi_genotype-doid Rule for TSV (output/tsv/mgi_genotype-doid.tsv) ------------------------------ Investigating output/tsv/mgi_genotype-doid.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:43:55 +0900 +timestamp: 2024-11-30 02:24:21 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_genotype (2024-11-22 22:43:55 +0900) -latest-prerequisite time: 2024-11-22 22:43:55 +0900 +--prepare:mgi_genotype (2024-11-30 02:24:21 +0900) +latest-prerequisite time: 2024-11-30 02:24:21 +0900 ................................ ### Update TSV for mgi_genotype-mgi_allele if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-mgi_allele.tsv is newer than config/mgi_genotype-mgi_allele/config.yaml # File output/tsv/mgi_genotype-mgi_allele.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-mgi_allele/config.yaml => output/tsv/mgi_genotype-mgi_allele.tsv -< 2024-11-22T22:43:55 mgi_genotype-mgi_allele +< 2024-11-30T02:24:21 mgi_genotype-mgi_allele togoid-config config/mgi_genotype-mgi_allele update # Success: output/tsv/mgi_genotype-mgi_allele.tsv is updated -> 2024-11-22T22:43:56 mgi_genotype-mgi_allele +> 2024-11-30T02:24:22 mgi_genotype-mgi_allele Rule for TSV (output/tsv/mgi_genotype-mgi_allele.tsv) ------------------------------ Investigating output/tsv/mgi_genotype-mgi_allele.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:43:56 +0900 +timestamp: 2024-11-30 02:24:22 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_genotype (2024-11-22 22:43:56 +0900) -latest-prerequisite time: 2024-11-22 22:43:56 +0900 +--prepare:mgi_genotype (2024-11-30 02:24:22 +0900) +latest-prerequisite time: 2024-11-30 02:24:22 +0900 ................................ ### Update TSV for mgi_genotype-mp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-mp.tsv is newer than config/mgi_genotype-mp/config.yaml # File output/tsv/mgi_genotype-mp.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-mp/config.yaml => output/tsv/mgi_genotype-mp.tsv -< 2024-11-22T22:43:56 mgi_genotype-mp +< 2024-11-30T02:24:22 mgi_genotype-mp togoid-config config/mgi_genotype-mp update # Success: output/tsv/mgi_genotype-mp.tsv is updated -> 2024-11-22T22:43:58 mgi_genotype-mp +> 2024-11-30T02:24:24 mgi_genotype-mp Rule for TSV (output/tsv/mgi_genotype-mp.tsv) ------------------------------ Investigating output/tsv/mgi_genotype-mp.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:43:58 +0900 +timestamp: 2024-11-30 02:24:24 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_genotype (2024-11-22 22:43:58 +0900) -latest-prerequisite time: 2024-11-22 22:43:58 +0900 +--prepare:mgi_genotype (2024-11-30 02:24:24 +0900) +latest-prerequisite time: 2024-11-30 02:24:24 +0900 ................................ ### Update TSV for mondo-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-doid.tsv is newer than config/mondo-doid/config.yaml # File output/tsv/mondo-doid.tsv has no timestamp file -# File output/tsv/mondo-doid.tsv is created 181.31613332461197 days ago (will be updated when >5 days) +# File output/tsv/mondo-doid.tsv is created 188.46921236530625 days ago (will be updated when >5 days) ## Update config/mondo-doid/config.yaml => output/tsv/mondo-doid.tsv -< 2024-11-22T22:43:58 mondo-doid +< 2024-11-30T02:24:24 mondo-doid togoid-config config/mondo-doid update # Error: output/tsv/mondo-doid.tsv new file size per old 0 / 155460 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-doid.tsv or created file was empty # Failure: output/tsv/mondo-doid.tsv is not updated -> 2024-11-22T22:43:59 mondo-doid +> 2024-11-30T02:24:25 mondo-doid Rule for TSV (output/tsv/mondo-doid.tsv) ------------------------------ Investigating output/tsv/mondo-doid.tsv @@ -2897,21 +2913,21 @@ task needed: true timestamp: 2024-05-25 15:08:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for mondo-hp_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-hp_phenotype.tsv is newer than config/mondo-hp_phenotype/config.yaml # File output/tsv/mondo-hp_phenotype.tsv has no timestamp file -# File output/tsv/mondo-hp_phenotype.tsv is created 181.31613233950347 days ago (will be updated when >5 days) +# File output/tsv/mondo-hp_phenotype.tsv is created 188.46921096998628 days ago (will be updated when >5 days) ## Update config/mondo-hp_phenotype/config.yaml => output/tsv/mondo-hp_phenotype.tsv -< 2024-11-22T22:43:59 mondo-hp_phenotype +< 2024-11-30T02:24:25 mondo-hp_phenotype togoid-config config/mondo-hp_phenotype update # Error: output/tsv/mondo-hp_phenotype.tsv new file size per old 0 / 9184 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-hp_phenotype.tsv or created file was empty # Failure: output/tsv/mondo-hp_phenotype.tsv is not updated -> 2024-11-22T22:43:59 mondo-hp_phenotype +> 2024-11-30T02:24:25 mondo-hp_phenotype Rule for TSV (output/tsv/mondo-hp_phenotype.tsv) ------------------------------ Investigating output/tsv/mondo-hp_phenotype.tsv @@ -2920,21 +2936,21 @@ task needed: true timestamp: 2024-05-25 15:08:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for mondo-meddra if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-meddra.tsv is newer than config/mondo-meddra/config.yaml # File output/tsv/mondo-meddra.tsv has no timestamp file -# File output/tsv/mondo-meddra.tsv is created 181.31613387214995 days ago (will be updated when >5 days) +# File output/tsv/mondo-meddra.tsv is created 188.46921099641798 days ago (will be updated when >5 days) ## Update config/mondo-meddra/config.yaml => output/tsv/mondo-meddra.tsv -< 2024-11-22T22:43:59 mondo-meddra +< 2024-11-30T02:24:25 mondo-meddra togoid-config config/mondo-meddra update # Error: output/tsv/mondo-meddra.tsv new file size per old 0 / 25262 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-meddra.tsv or created file was empty # Failure: output/tsv/mondo-meddra.tsv is not updated -> 2024-11-22T22:44:00 mondo-meddra +> 2024-11-30T02:24:26 mondo-meddra Rule for TSV (output/tsv/mondo-meddra.tsv) ------------------------------ Investigating output/tsv/mondo-meddra.tsv @@ -2943,21 +2959,21 @@ task needed: true timestamp: 2024-05-25 15:08:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for mondo-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-mesh.tsv is newer than config/mondo-mesh/config.yaml # File output/tsv/mondo-mesh.tsv has no timestamp file -# File output/tsv/mondo-mesh.tsv is created 181.3161329350113 days ago (will be updated when >5 days) +# File output/tsv/mondo-mesh.tsv is created 188.46921012208733 days ago (will be updated when >5 days) ## Update config/mondo-mesh/config.yaml => output/tsv/mondo-mesh.tsv -< 2024-11-22T22:44:00 mondo-mesh +< 2024-11-30T02:24:26 mondo-mesh togoid-config config/mondo-mesh update # Error: output/tsv/mondo-mesh.tsv new file size per old 0 / 133836 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-mesh.tsv or created file was empty # Failure: output/tsv/mondo-mesh.tsv is not updated -> 2024-11-22T22:44:00 mondo-mesh +> 2024-11-30T02:24:26 mondo-mesh Rule for TSV (output/tsv/mondo-mesh.tsv) ------------------------------ Investigating output/tsv/mondo-mesh.tsv @@ -2966,21 +2982,21 @@ task needed: true timestamp: 2024-05-25 15:08:46 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for mondo-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-omim_phenotype.tsv is newer than config/mondo-omim_phenotype/config.yaml # File output/tsv/mondo-omim_phenotype.tsv has no timestamp file -# File output/tsv/mondo-omim_phenotype.tsv is created 181.31613311635832 days ago (will be updated when >5 days) +# File output/tsv/mondo-omim_phenotype.tsv is created 188.46921038315176 days ago (will be updated when >5 days) ## Update config/mondo-omim_phenotype/config.yaml => output/tsv/mondo-omim_phenotype.tsv -< 2024-11-22T22:44:00 mondo-omim_phenotype +< 2024-11-30T02:24:26 mondo-omim_phenotype togoid-config config/mondo-omim_phenotype update # Error: output/tsv/mondo-omim_phenotype.tsv new file size per old 0 / 145395 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-omim_phenotype.tsv or created file was empty # Failure: output/tsv/mondo-omim_phenotype.tsv is not updated -> 2024-11-22T22:44:01 mondo-omim_phenotype +> 2024-11-30T02:24:26 mondo-omim_phenotype Rule for TSV (output/tsv/mondo-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/mondo-omim_phenotype.tsv @@ -2989,21 +3005,21 @@ task needed: true timestamp: 2024-05-25 15:08:46 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for mondo-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-orphanet_phenotype.tsv is newer than config/mondo-orphanet_phenotype/config.yaml # File output/tsv/mondo-orphanet_phenotype.tsv has no timestamp file -# File output/tsv/mondo-orphanet_phenotype.tsv is created 181.31613299940705 days ago (will be updated when >5 days) +# File output/tsv/mondo-orphanet_phenotype.tsv is created 188.4692099142427 days ago (will be updated when >5 days) ## Update config/mondo-orphanet_phenotype/config.yaml => output/tsv/mondo-orphanet_phenotype.tsv -< 2024-11-22T22:44:01 mondo-orphanet_phenotype +< 2024-11-30T02:24:26 mondo-orphanet_phenotype togoid-config config/mondo-orphanet_phenotype update # Error: output/tsv/mondo-orphanet_phenotype.tsv new file size per old 0 / 146923 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-orphanet_phenotype.tsv or created file was empty # Failure: output/tsv/mondo-orphanet_phenotype.tsv is not updated -> 2024-11-22T22:44:01 mondo-orphanet_phenotype +> 2024-11-30T02:24:27 mondo-orphanet_phenotype Rule for TSV (output/tsv/mondo-orphanet_phenotype.tsv) ------------------------------ Investigating output/tsv/mondo-orphanet_phenotype.tsv @@ -3012,450 +3028,450 @@ task needed: true timestamp: 2024-05-25 15:08:47 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for nando-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/nando-mondo.tsv is newer than config/nando-mondo/config.yaml # File output/tsv/nando-mondo.tsv has no timestamp file -# File output/tsv/nando-mondo.tsv is created 6.778497776625613 days ago (will be updated when >5 days) +# File output/tsv/nando-mondo.tsv is created 7.153072674806527 days ago (will be updated when >5 days) ## Update config/nando-mondo/config.yaml => output/tsv/nando-mondo.tsv -< 2024-11-22T22:44:01 nando-mondo +< 2024-11-30T02:24:27 nando-mondo togoid-config config/nando-mondo update # Success: output/tsv/nando-mondo.tsv is updated -> 2024-11-22T22:44:01 nando-mondo +> 2024-11-30T02:24:27 nando-mondo Rule for TSV (output/tsv/nando-mondo.tsv) ------------------------------ Investigating output/tsv/nando-mondo.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 22:44:01 +0900 +timestamp: 2024-11-30 02:24:27 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for ncbigene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_gene.tsv is newer than config/ncbigene-ensembl_gene/config.yaml # File output/tsv/ncbigene-ensembl_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_gene/config.yaml => output/tsv/ncbigene-ensembl_gene.tsv -< 2024-11-22T22:44:01 ncbigene-ensembl_gene +< 2024-11-30T02:24:27 ncbigene-ensembl_gene togoid-config config/ncbigene-ensembl_gene update # Success: output/tsv/ncbigene-ensembl_gene.tsv is updated -> 2024-11-22T22:44:37 ncbigene-ensembl_gene +> 2024-11-30T02:25:01 ncbigene-ensembl_gene Rule for TSV (output/tsv/ncbigene-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:44:37 +0900 +timestamp: 2024-11-30 02:25:01 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 22:44:37 +0900) -latest-prerequisite time: 2024-11-22 22:44:37 +0900 +--prepare:ncbigene (2024-11-30 02:25:01 +0900) +latest-prerequisite time: 2024-11-30 02:25:01 +0900 ................................ ### Update TSV for ncbigene-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_protein.tsv is newer than config/ncbigene-ensembl_protein/config.yaml # File output/tsv/ncbigene-ensembl_protein.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_protein/config.yaml => output/tsv/ncbigene-ensembl_protein.tsv -< 2024-11-22T22:44:37 ncbigene-ensembl_protein +< 2024-11-30T02:25:01 ncbigene-ensembl_protein togoid-config config/ncbigene-ensembl_protein update # Success: output/tsv/ncbigene-ensembl_protein.tsv is updated -> 2024-11-22T22:45:47 ncbigene-ensembl_protein +> 2024-11-30T02:26:13 ncbigene-ensembl_protein Rule for TSV (output/tsv/ncbigene-ensembl_protein.tsv) ------------------------------ Investigating output/tsv/ncbigene-ensembl_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:45:47 +0900 +timestamp: 2024-11-30 02:26:13 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 22:45:47 +0900) -latest-prerequisite time: 2024-11-22 22:45:47 +0900 +--prepare:ncbigene (2024-11-30 02:26:13 +0900) +latest-prerequisite time: 2024-11-30 02:26:13 +0900 ................................ ### Update TSV for ncbigene-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_transcript.tsv is newer than config/ncbigene-ensembl_transcript/config.yaml # File output/tsv/ncbigene-ensembl_transcript.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_transcript/config.yaml => output/tsv/ncbigene-ensembl_transcript.tsv -< 2024-11-22T22:45:47 ncbigene-ensembl_transcript +< 2024-11-30T02:26:13 ncbigene-ensembl_transcript togoid-config config/ncbigene-ensembl_transcript update # Success: output/tsv/ncbigene-ensembl_transcript.tsv is updated -> 2024-11-22T22:46:50 ncbigene-ensembl_transcript +> 2024-11-30T02:27:17 ncbigene-ensembl_transcript Rule for TSV (output/tsv/ncbigene-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/ncbigene-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:46:50 +0900 +timestamp: 2024-11-30 02:27:17 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 22:46:50 +0900) -latest-prerequisite time: 2024-11-22 22:46:50 +0900 +--prepare:ncbigene (2024-11-30 02:27:17 +0900) +latest-prerequisite time: 2024-11-30 02:27:17 +0900 ................................ ### Update TSV for ncbigene-flybase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-flybase_gene.tsv is newer than config/ncbigene-flybase_gene/config.yaml # File output/tsv/ncbigene-flybase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-flybase_gene/config.yaml => output/tsv/ncbigene-flybase_gene.tsv -< 2024-11-22T22:46:50 ncbigene-flybase_gene +< 2024-11-30T02:27:17 ncbigene-flybase_gene togoid-config config/ncbigene-flybase_gene update # Success: output/tsv/ncbigene-flybase_gene.tsv is updated -> 2024-11-22T22:50:01 ncbigene-flybase_gene +> 2024-11-30T02:28:39 ncbigene-flybase_gene Rule for TSV (output/tsv/ncbigene-flybase_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-flybase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 22:50:01 +0900 +timestamp: 2024-11-30 02:28:39 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 22:50:01 +0900) -latest-prerequisite time: 2024-11-22 22:50:01 +0900 +--prepare:ncbigene (2024-11-30 02:28:39 +0900) +latest-prerequisite time: 2024-11-30 02:28:39 +0900 ................................ ### Update TSV for ncbigene-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-go.tsv is newer than config/ncbigene-go/config.yaml # File output/tsv/ncbigene-go.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-go/config.yaml => output/tsv/ncbigene-go.tsv -< 2024-11-22T22:50:01 ncbigene-go +< 2024-11-30T02:28:39 ncbigene-go togoid-config config/ncbigene-go update # Success: output/tsv/ncbigene-go.tsv is updated -> 2024-11-22T23:06:39 ncbigene-go +> 2024-11-30T02:34:01 ncbigene-go Rule for TSV (output/tsv/ncbigene-go.tsv) ------------------------------ Investigating output/tsv/ncbigene-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:06:38 +0900 +timestamp: 2024-11-30 02:34:01 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:06:39 +0900) -latest-prerequisite time: 2024-11-22 23:06:39 +0900 +--prepare:ncbigene (2024-11-30 02:34:01 +0900) +latest-prerequisite time: 2024-11-30 02:34:01 +0900 ................................ ### Update TSV for ncbigene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-hgnc.tsv is newer than config/ncbigene-hgnc/config.yaml # File output/tsv/ncbigene-hgnc.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-hgnc/config.yaml => output/tsv/ncbigene-hgnc.tsv -< 2024-11-22T23:06:39 ncbigene-hgnc +< 2024-11-30T02:34:01 ncbigene-hgnc togoid-config config/ncbigene-hgnc update # Success: output/tsv/ncbigene-hgnc.tsv is updated -> 2024-11-22T23:06:40 ncbigene-hgnc +> 2024-11-30T02:34:02 ncbigene-hgnc Rule for TSV (output/tsv/ncbigene-hgnc.tsv) ------------------------------ Investigating output/tsv/ncbigene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:06:40 +0900 +timestamp: 2024-11-30 02:34:02 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:06:40 +0900) -latest-prerequisite time: 2024-11-22 23:06:40 +0900 +--prepare:ncbigene (2024-11-30 02:34:02 +0900) +latest-prerequisite time: 2024-11-30 02:34:02 +0900 ................................ ### Update TSV for ncbigene-mgi_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-mgi_gene.tsv is newer than config/ncbigene-mgi_gene/config.yaml # File output/tsv/ncbigene-mgi_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-mgi_gene/config.yaml => output/tsv/ncbigene-mgi_gene.tsv -< 2024-11-22T23:06:40 ncbigene-mgi_gene +< 2024-11-30T02:34:02 ncbigene-mgi_gene togoid-config config/ncbigene-mgi_gene update # Success: output/tsv/ncbigene-mgi_gene.tsv is updated -> 2024-11-22T23:07:52 ncbigene-mgi_gene +> 2024-11-30T02:35:11 ncbigene-mgi_gene Rule for TSV (output/tsv/ncbigene-mgi_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-mgi_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:07:52 +0900 +timestamp: 2024-11-30 02:35:11 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:07:52 +0900) -latest-prerequisite time: 2024-11-22 23:07:52 +0900 +--prepare:ncbigene (2024-11-30 02:35:11 +0900) +latest-prerequisite time: 2024-11-30 02:35:11 +0900 ................................ ### Update TSV for ncbigene-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-mirbase.tsv is newer than config/ncbigene-mirbase/config.yaml # File output/tsv/ncbigene-mirbase.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-mirbase/config.yaml => output/tsv/ncbigene-mirbase.tsv -< 2024-11-22T23:07:52 ncbigene-mirbase +< 2024-11-30T02:35:11 ncbigene-mirbase togoid-config config/ncbigene-mirbase update # Success: output/tsv/ncbigene-mirbase.tsv is updated -> 2024-11-22T23:09:45 ncbigene-mirbase +> 2024-11-30T02:37:04 ncbigene-mirbase Rule for TSV (output/tsv/ncbigene-mirbase.tsv) ------------------------------ Investigating output/tsv/ncbigene-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:09:45 +0900 +timestamp: 2024-11-30 02:37:04 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:09:45 +0900) -latest-prerequisite time: 2024-11-22 23:09:45 +0900 +--prepare:ncbigene (2024-11-30 02:37:04 +0900) +latest-prerequisite time: 2024-11-30 02:37:04 +0900 ................................ ### Update TSV for ncbigene-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-omim_gene.tsv is newer than config/ncbigene-omim_gene/config.yaml # File output/tsv/ncbigene-omim_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-omim_gene/config.yaml => output/tsv/ncbigene-omim_gene.tsv -< 2024-11-22T23:09:45 ncbigene-omim_gene +< 2024-11-30T02:37:04 ncbigene-omim_gene togoid-config config/ncbigene-omim_gene update # Success: output/tsv/ncbigene-omim_gene.tsv is updated -> 2024-11-22T23:09:46 ncbigene-omim_gene +> 2024-11-30T02:37:05 ncbigene-omim_gene Rule for TSV (output/tsv/ncbigene-omim_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-omim_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:09:46 +0900 +timestamp: 2024-11-30 02:37:05 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:09:46 +0900) -latest-prerequisite time: 2024-11-22 23:09:46 +0900 +--prepare:ncbigene (2024-11-30 02:37:05 +0900) +latest-prerequisite time: 2024-11-30 02:37:05 +0900 ................................ ### Update TSV for ncbigene-refseq_genomic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_genomic.tsv is newer than config/ncbigene-refseq_genomic/config.yaml # File output/tsv/ncbigene-refseq_genomic.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_genomic/config.yaml => output/tsv/ncbigene-refseq_genomic.tsv -< 2024-11-22T23:09:46 ncbigene-refseq_genomic +< 2024-11-30T02:37:05 ncbigene-refseq_genomic togoid-config config/ncbigene-refseq_genomic update # Success: output/tsv/ncbigene-refseq_genomic.tsv is updated -> 2024-11-22T23:14:22 ncbigene-refseq_genomic +> 2024-11-30T02:42:26 ncbigene-refseq_genomic Rule for TSV (output/tsv/ncbigene-refseq_genomic.tsv) ------------------------------ Investigating output/tsv/ncbigene-refseq_genomic.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:14:22 +0900 +timestamp: 2024-11-30 02:42:26 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:14:22 +0900) -latest-prerequisite time: 2024-11-22 23:14:22 +0900 +--prepare:ncbigene (2024-11-30 02:42:26 +0900) +latest-prerequisite time: 2024-11-30 02:42:26 +0900 ................................ ### Update TSV for ncbigene-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_protein.tsv is newer than config/ncbigene-refseq_protein/config.yaml # File output/tsv/ncbigene-refseq_protein.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_protein/config.yaml => output/tsv/ncbigene-refseq_protein.tsv -< 2024-11-22T23:14:22 ncbigene-refseq_protein +< 2024-11-30T02:42:27 ncbigene-refseq_protein togoid-config config/ncbigene-refseq_protein update # Success: output/tsv/ncbigene-refseq_protein.tsv is updated -> 2024-11-22T23:19:52 ncbigene-refseq_protein +> 2024-11-30T02:47:27 ncbigene-refseq_protein Rule for TSV (output/tsv/ncbigene-refseq_protein.tsv) ------------------------------ Investigating output/tsv/ncbigene-refseq_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:19:52 +0900 +timestamp: 2024-11-30 02:47:27 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:19:52 +0900) -latest-prerequisite time: 2024-11-22 23:19:52 +0900 +--prepare:ncbigene (2024-11-30 02:47:27 +0900) +latest-prerequisite time: 2024-11-30 02:47:27 +0900 ................................ ### Update TSV for ncbigene-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_rna.tsv is newer than config/ncbigene-refseq_rna/config.yaml # File output/tsv/ncbigene-refseq_rna.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_rna/config.yaml => output/tsv/ncbigene-refseq_rna.tsv -< 2024-11-22T23:19:52 ncbigene-refseq_rna +< 2024-11-30T02:47:27 ncbigene-refseq_rna togoid-config config/ncbigene-refseq_rna update # Success: output/tsv/ncbigene-refseq_rna.tsv is updated -> 2024-11-22T23:24:50 ncbigene-refseq_rna +> 2024-11-30T02:51:41 ncbigene-refseq_rna Rule for TSV (output/tsv/ncbigene-refseq_rna.tsv) ------------------------------ Investigating output/tsv/ncbigene-refseq_rna.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:24:50 +0900 +timestamp: 2024-11-30 02:51:41 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:24:50 +0900) -latest-prerequisite time: 2024-11-22 23:24:50 +0900 +--prepare:ncbigene (2024-11-30 02:51:41 +0900) +latest-prerequisite time: 2024-11-30 02:51:41 +0900 ................................ ### Update TSV for ncbigene-rgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-rgd.tsv is newer than config/ncbigene-rgd/config.yaml # File output/tsv/ncbigene-rgd.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-rgd/config.yaml => output/tsv/ncbigene-rgd.tsv -< 2024-11-22T23:24:50 ncbigene-rgd +< 2024-11-30T02:51:41 ncbigene-rgd togoid-config config/ncbigene-rgd update # Success: output/tsv/ncbigene-rgd.tsv is updated -> 2024-11-22T23:25:59 ncbigene-rgd +> 2024-11-30T02:52:49 ncbigene-rgd Rule for TSV (output/tsv/ncbigene-rgd.tsv) ------------------------------ Investigating output/tsv/ncbigene-rgd.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:25:59 +0900 +timestamp: 2024-11-30 02:52:49 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:25:59 +0900) -latest-prerequisite time: 2024-11-22 23:25:59 +0900 +--prepare:ncbigene (2024-11-30 02:52:49 +0900) +latest-prerequisite time: 2024-11-30 02:52:49 +0900 ................................ ### Update TSV for ncbigene-sgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-sgd.tsv is newer than config/ncbigene-sgd/config.yaml # File output/tsv/ncbigene-sgd.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-sgd/config.yaml => output/tsv/ncbigene-sgd.tsv -< 2024-11-22T23:25:59 ncbigene-sgd +< 2024-11-30T02:52:49 ncbigene-sgd togoid-config config/ncbigene-sgd update # Success: output/tsv/ncbigene-sgd.tsv is updated -> 2024-11-22T23:27:16 ncbigene-sgd +> 2024-11-30T02:54:07 ncbigene-sgd Rule for TSV (output/tsv/ncbigene-sgd.tsv) ------------------------------ Investigating output/tsv/ncbigene-sgd.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:27:16 +0900 +timestamp: 2024-11-30 02:54:07 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:27:16 +0900) -latest-prerequisite time: 2024-11-22 23:27:16 +0900 +--prepare:ncbigene (2024-11-30 02:54:07 +0900) +latest-prerequisite time: 2024-11-30 02:54:07 +0900 ................................ ### Update TSV for ncbigene-tair if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-tair.tsv is newer than config/ncbigene-tair/config.yaml # File output/tsv/ncbigene-tair.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-tair/config.yaml => output/tsv/ncbigene-tair.tsv -< 2024-11-22T23:27:16 ncbigene-tair +< 2024-11-30T02:54:07 ncbigene-tair togoid-config config/ncbigene-tair update # Success: output/tsv/ncbigene-tair.tsv is updated -> 2024-11-22T23:28:35 ncbigene-tair +> 2024-11-30T02:55:26 ncbigene-tair Rule for TSV (output/tsv/ncbigene-tair.tsv) ------------------------------ Investigating output/tsv/ncbigene-tair.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:28:35 +0900 +timestamp: 2024-11-30 02:55:26 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:28:35 +0900) -latest-prerequisite time: 2024-11-22 23:28:35 +0900 +--prepare:ncbigene (2024-11-30 02:55:26 +0900) +latest-prerequisite time: 2024-11-30 02:55:26 +0900 ................................ ### Update TSV for ncbigene-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-taxonomy.tsv is newer than config/ncbigene-taxonomy/config.yaml # File output/tsv/ncbigene-taxonomy.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-taxonomy/config.yaml => output/tsv/ncbigene-taxonomy.tsv -< 2024-11-22T23:28:35 ncbigene-taxonomy +< 2024-11-30T02:55:26 ncbigene-taxonomy togoid-config config/ncbigene-taxonomy update # Success: output/tsv/ncbigene-taxonomy.tsv is updated -> 2024-11-22T23:29:24 ncbigene-taxonomy +> 2024-11-30T02:56:16 ncbigene-taxonomy Rule for TSV (output/tsv/ncbigene-taxonomy.tsv) ------------------------------ Investigating output/tsv/ncbigene-taxonomy.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:29:24 +0900 +timestamp: 2024-11-30 02:56:16 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:29:24 +0900) -latest-prerequisite time: 2024-11-22 23:29:24 +0900 +--prepare:ncbigene (2024-11-30 02:56:16 +0900) +latest-prerequisite time: 2024-11-30 02:56:16 +0900 ................................ ### Update TSV for ncbigene-vgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-vgnc.tsv is newer than config/ncbigene-vgnc/config.yaml # File output/tsv/ncbigene-vgnc.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-vgnc/config.yaml => output/tsv/ncbigene-vgnc.tsv -< 2024-11-22T23:29:24 ncbigene-vgnc +< 2024-11-30T02:56:16 ncbigene-vgnc togoid-config config/ncbigene-vgnc update # Success: output/tsv/ncbigene-vgnc.tsv is updated -> 2024-11-22T23:30:42 ncbigene-vgnc +> 2024-11-30T02:57:34 ncbigene-vgnc Rule for TSV (output/tsv/ncbigene-vgnc.tsv) ------------------------------ Investigating output/tsv/ncbigene-vgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:30:42 +0900 +timestamp: 2024-11-30 02:57:34 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:30:42 +0900) -latest-prerequisite time: 2024-11-22 23:30:42 +0900 +--prepare:ncbigene (2024-11-30 02:57:34 +0900) +latest-prerequisite time: 2024-11-30 02:57:34 +0900 ................................ ### Update TSV for ncbigene-wormbase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-wormbase_gene.tsv is newer than config/ncbigene-wormbase_gene/config.yaml # File output/tsv/ncbigene-wormbase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-wormbase_gene/config.yaml => output/tsv/ncbigene-wormbase_gene.tsv -< 2024-11-22T23:30:42 ncbigene-wormbase_gene +< 2024-11-30T02:57:34 ncbigene-wormbase_gene togoid-config config/ncbigene-wormbase_gene update # Success: output/tsv/ncbigene-wormbase_gene.tsv is updated -> 2024-11-22T23:32:00 ncbigene-wormbase_gene +> 2024-11-30T02:58:53 ncbigene-wormbase_gene Rule for TSV (output/tsv/ncbigene-wormbase_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-wormbase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:32:00 +0900 +timestamp: 2024-11-30 02:58:53 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:32:00 +0900) -latest-prerequisite time: 2024-11-22 23:32:00 +0900 +--prepare:ncbigene (2024-11-30 02:58:53 +0900) +latest-prerequisite time: 2024-11-30 02:58:53 +0900 ................................ ### Update TSV for ncbigene-xenbase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-xenbase_gene.tsv is newer than config/ncbigene-xenbase_gene/config.yaml # File output/tsv/ncbigene-xenbase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-xenbase_gene/config.yaml => output/tsv/ncbigene-xenbase_gene.tsv -< 2024-11-22T23:32:00 ncbigene-xenbase_gene +< 2024-11-30T02:58:53 ncbigene-xenbase_gene togoid-config config/ncbigene-xenbase_gene update # Success: output/tsv/ncbigene-xenbase_gene.tsv is updated -> 2024-11-22T23:33:19 ncbigene-xenbase_gene +> 2024-11-30T03:00:11 ncbigene-xenbase_gene Rule for TSV (output/tsv/ncbigene-xenbase_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-xenbase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:33:19 +0900 +timestamp: 2024-11-30 03:00:11 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:33:19 +0900) -latest-prerequisite time: 2024-11-22 23:33:19 +0900 +--prepare:ncbigene (2024-11-30 03:00:11 +0900) +latest-prerequisite time: 2024-11-30 03:00:11 +0900 ................................ ### Update TSV for ncbigene-zfin_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-zfin_gene.tsv is newer than config/ncbigene-zfin_gene/config.yaml # File output/tsv/ncbigene-zfin_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-zfin_gene/config.yaml => output/tsv/ncbigene-zfin_gene.tsv -< 2024-11-22T23:33:19 ncbigene-zfin_gene +< 2024-11-30T03:00:11 ncbigene-zfin_gene togoid-config config/ncbigene-zfin_gene update # Success: output/tsv/ncbigene-zfin_gene.tsv is updated -> 2024-11-22T23:34:38 ncbigene-zfin_gene +> 2024-11-30T03:01:29 ncbigene-zfin_gene Rule for TSV (output/tsv/ncbigene-zfin_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-zfin_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:34:37 +0900 +timestamp: 2024-11-30 03:01:29 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-11-22 23:34:38 +0900) -latest-prerequisite time: 2024-11-22 23:34:38 +0900 +--prepare:ncbigene (2024-11-30 03:01:29 +0900) +latest-prerequisite time: 2024-11-30 03:01:29 +0900 ................................ ### Update TSV for ncit_disease-ncit_tissue if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncit_disease-ncit_tissue.tsv is newer than config/ncit_disease-ncit_tissue/config.yaml # File output/tsv/ncit_disease-ncit_tissue.tsv has no timestamp file -# File output/tsv/ncit_disease-ncit_tissue.tsv is created 6.7869741528505445 days ago (will be updated when >5 days) +# File output/tsv/ncit_disease-ncit_tissue.tsv is created 7.143603484942048 days ago (will be updated when >5 days) ## Update config/ncit_disease-ncit_tissue/config.yaml => output/tsv/ncit_disease-ncit_tissue.tsv -< 2024-11-22T23:34:38 ncit_disease-ncit_tissue +< 2024-11-30T03:01:29 ncit_disease-ncit_tissue togoid-config config/ncit_disease-ncit_tissue update # Success: output/tsv/ncit_disease-ncit_tissue.tsv is updated -> 2024-11-22T23:34:42 ncit_disease-ncit_tissue +> 2024-11-30T03:01:32 ncit_disease-ncit_tissue Rule for TSV (output/tsv/ncit_disease-ncit_tissue.tsv) ------------------------------ Investigating output/tsv/ncit_disease-ncit_tissue.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:34:42 +0900 +timestamp: 2024-11-30 03:01:32 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for oma_protein-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3470,8 +3486,8 @@ task needed: true timestamp: 2024-09-27 22:31:53 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-11-22 23:34:42 +0900) -latest-prerequisite time: 2024-11-22 23:34:42 +0900 +--prepare:oma_protein (2024-11-30 03:01:32 +0900) +latest-prerequisite time: 2024-11-30 03:01:32 +0900 ................................ ### Update TSV for oma_protein-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3486,8 +3502,8 @@ task needed: true timestamp: 2024-09-27 22:39:06 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-11-22 23:34:42 +0900) -latest-prerequisite time: 2024-11-22 23:34:42 +0900 +--prepare:oma_protein (2024-11-30 03:01:32 +0900) +latest-prerequisite time: 2024-11-30 03:01:32 +0900 ................................ ### Update TSV for oma_protein-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3502,8 +3518,8 @@ task needed: true timestamp: 2024-09-27 22:39:32 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-11-22 23:34:42 +0900) -latest-prerequisite time: 2024-11-22 23:34:42 +0900 +--prepare:oma_protein (2024-11-30 03:01:32 +0900) +latest-prerequisite time: 2024-11-30 03:01:32 +0900 ................................ ### Update TSV for oma_protein-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3518,820 +3534,824 @@ task needed: true timestamp: 2024-09-27 22:39:39 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-11-22 23:34:42 +0900) -latest-prerequisite time: 2024-11-22 23:34:42 +0900 +--prepare:oma_protein (2024-11-30 03:01:32 +0900) +latest-prerequisite time: 2024-11-30 03:01:32 +0900 ................................ ### Update TSV for orphanet_gene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-ensembl_gene.tsv is newer than config/orphanet_gene-ensembl_gene/config.yaml # File output/tsv/orphanet_gene-ensembl_gene.tsv has no timestamp file -# File output/tsv/orphanet_gene-ensembl_gene.tsv is created 6.78701653986904 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-ensembl_gene.tsv is created 7.143628146281076 days ago (will be updated when >5 days) ## Update config/orphanet_gene-ensembl_gene/config.yaml => output/tsv/orphanet_gene-ensembl_gene.tsv -< 2024-11-22T23:34:42 orphanet_gene-ensembl_gene +< 2024-11-30T03:01:32 orphanet_gene-ensembl_gene togoid-config config/orphanet_gene-ensembl_gene update # Success: output/tsv/orphanet_gene-ensembl_gene.tsv is updated -> 2024-11-22T23:34:42 orphanet_gene-ensembl_gene +> 2024-11-30T03:01:32 orphanet_gene-ensembl_gene Rule for TSV (output/tsv/orphanet_gene-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-ensembl_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:34:42 +0900 +timestamp: 2024-11-30 03:01:32 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for orphanet_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-hgnc.tsv is newer than config/orphanet_gene-hgnc/config.yaml # File output/tsv/orphanet_gene-hgnc.tsv has no timestamp file -# File output/tsv/orphanet_gene-hgnc.tsv is created 6.787019330745069 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-hgnc.tsv is created 7.143628146143126 days ago (will be updated when >5 days) ## Update config/orphanet_gene-hgnc/config.yaml => output/tsv/orphanet_gene-hgnc.tsv -< 2024-11-22T23:34:42 orphanet_gene-hgnc +< 2024-11-30T03:01:32 orphanet_gene-hgnc togoid-config config/orphanet_gene-hgnc update # Success: output/tsv/orphanet_gene-hgnc.tsv is updated -> 2024-11-22T23:34:43 orphanet_gene-hgnc +> 2024-11-30T03:01:33 orphanet_gene-hgnc Rule for TSV (output/tsv/orphanet_gene-hgnc.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-hgnc.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:34:43 +0900 +timestamp: 2024-11-30 03:01:33 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for orphanet_gene-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-omim_gene.tsv is newer than config/orphanet_gene-omim_gene/config.yaml # File output/tsv/orphanet_gene-omim_gene.tsv has no timestamp file -# File output/tsv/orphanet_gene-omim_gene.tsv is created 6.7870191883052895 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-omim_gene.tsv is created 7.143628249114839 days ago (will be updated when >5 days) ## Update config/orphanet_gene-omim_gene/config.yaml => output/tsv/orphanet_gene-omim_gene.tsv -< 2024-11-22T23:34:43 orphanet_gene-omim_gene +< 2024-11-30T03:01:33 orphanet_gene-omim_gene togoid-config config/orphanet_gene-omim_gene update # Success: output/tsv/orphanet_gene-omim_gene.tsv is updated -> 2024-11-22T23:34:43 orphanet_gene-omim_gene +> 2024-11-30T03:01:33 orphanet_gene-omim_gene Rule for TSV (output/tsv/orphanet_gene-omim_gene.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-omim_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:34:43 +0900 +timestamp: 2024-11-30 03:01:33 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for orphanet_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-uniprot.tsv is newer than config/orphanet_gene-uniprot/config.yaml # File output/tsv/orphanet_gene-uniprot.tsv has no timestamp file -# File output/tsv/orphanet_gene-uniprot.tsv is created 6.787019576823565 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-uniprot.tsv is created 7.1436298544224766 days ago (will be updated when >5 days) ## Update config/orphanet_gene-uniprot/config.yaml => output/tsv/orphanet_gene-uniprot.tsv -< 2024-11-22T23:34:43 orphanet_gene-uniprot +< 2024-11-30T03:01:33 orphanet_gene-uniprot togoid-config config/orphanet_gene-uniprot update # Success: output/tsv/orphanet_gene-uniprot.tsv is updated -> 2024-11-22T23:34:44 orphanet_gene-uniprot +> 2024-11-30T03:01:35 orphanet_gene-uniprot Rule for TSV (output/tsv/orphanet_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:34:44 +0900 +timestamp: 2024-11-30 03:01:35 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for orphanet_phenotype-meddra if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-meddra.tsv is newer than config/orphanet_phenotype-meddra/config.yaml # File output/tsv/orphanet_phenotype-meddra.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-meddra.tsv is created 6.787019881587292 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-meddra.tsv is created 7.143640071268461 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-meddra/config.yaml => output/tsv/orphanet_phenotype-meddra.tsv -< 2024-11-22T23:34:44 orphanet_phenotype-meddra +< 2024-11-30T03:01:35 orphanet_phenotype-meddra togoid-config config/orphanet_phenotype-meddra update # Success: output/tsv/orphanet_phenotype-meddra.tsv is updated -> 2024-11-22T23:34:44 orphanet_phenotype-meddra +> 2024-11-30T03:01:36 orphanet_phenotype-meddra Rule for TSV (output/tsv/orphanet_phenotype-meddra.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-meddra.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:34:44 +0900 +timestamp: 2024-11-30 03:01:36 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for orphanet_phenotype-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-mesh.tsv is newer than config/orphanet_phenotype-mesh/config.yaml # File output/tsv/orphanet_phenotype-mesh.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-mesh.tsv is created 6.787020122000973 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-mesh.tsv is created 7.143651317960948 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-mesh/config.yaml => output/tsv/orphanet_phenotype-mesh.tsv -< 2024-11-22T23:34:44 orphanet_phenotype-mesh +< 2024-11-30T03:01:36 orphanet_phenotype-mesh togoid-config config/orphanet_phenotype-mesh update # Success: output/tsv/orphanet_phenotype-mesh.tsv is updated -> 2024-11-22T23:34:44 orphanet_phenotype-mesh +> 2024-11-30T03:01:37 orphanet_phenotype-mesh Rule for TSV (output/tsv/orphanet_phenotype-mesh.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-mesh.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:34:44 +0900 +timestamp: 2024-11-30 03:01:37 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for orphanet_phenotype-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-omim_phenotype.tsv is newer than config/orphanet_phenotype-omim_phenotype/config.yaml # File output/tsv/orphanet_phenotype-omim_phenotype.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-omim_phenotype.tsv is created 6.78701995590117 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-omim_phenotype.tsv is created 7.1436573369970375 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-omim_phenotype/config.yaml => output/tsv/orphanet_phenotype-omim_phenotype.tsv -< 2024-11-22T23:34:44 orphanet_phenotype-omim_phenotype +< 2024-11-30T03:01:37 orphanet_phenotype-omim_phenotype togoid-config config/orphanet_phenotype-omim_phenotype update # Success: output/tsv/orphanet_phenotype-omim_phenotype.tsv is updated -> 2024-11-22T23:34:45 orphanet_phenotype-omim_phenotype +> 2024-11-30T03:01:37 orphanet_phenotype-omim_phenotype Rule for TSV (output/tsv/orphanet_phenotype-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-omim_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:34:45 +0900 +timestamp: 2024-11-30 03:01:37 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for orphanet_phenotype-orphanet_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-orphanet_gene.tsv is newer than config/orphanet_phenotype-orphanet_gene/config.yaml # File output/tsv/orphanet_phenotype-orphanet_gene.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-orphanet_gene.tsv is created 6.787019535045093 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-orphanet_gene.tsv is created 7.1436576520655555 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-orphanet_gene/config.yaml => output/tsv/orphanet_phenotype-orphanet_gene.tsv -< 2024-11-22T23:34:45 orphanet_phenotype-orphanet_gene +< 2024-11-30T03:01:37 orphanet_phenotype-orphanet_gene togoid-config config/orphanet_phenotype-orphanet_gene update # Success: output/tsv/orphanet_phenotype-orphanet_gene.tsv is updated -> 2024-11-22T23:34:45 orphanet_phenotype-orphanet_gene +> 2024-11-30T03:01:38 orphanet_phenotype-orphanet_gene Rule for TSV (output/tsv/orphanet_phenotype-orphanet_gene.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-orphanet_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:34:45 +0900 +timestamp: 2024-11-30 03:01:38 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pdb-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-go.tsv is newer than config/pdb-go/config.yaml # File output/tsv/pdb-go.tsv has no timestamp file -# File output/tsv/pdb-go.tsv is created 6.78697856452397 days ago (will be updated when >5 days) +# File output/tsv/pdb-go.tsv is created 7.1436130291159605 days ago (will be updated when >5 days) ## Update config/pdb-go/config.yaml => output/tsv/pdb-go.tsv -< 2024-11-22T23:34:45 pdb-go +< 2024-11-30T03:01:38 pdb-go togoid-config config/pdb-go update # Success: output/tsv/pdb-go.tsv is updated -> 2024-11-22T23:34:50 pdb-go +> 2024-11-30T03:01:42 pdb-go Rule for TSV (output/tsv/pdb-go.tsv) ------------------------------ Investigating output/tsv/pdb-go.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:34:50 +0900 +timestamp: 2024-11-30 03:01:42 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pdb-interpro if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-interpro.tsv is newer than config/pdb-interpro/config.yaml # File output/tsv/pdb-interpro.tsv has no timestamp file -# File output/tsv/pdb-interpro.tsv is created 6.787008985259235 days ago (will be updated when >5 days) +# File output/tsv/pdb-interpro.tsv is created 7.143643223507257 days ago (will be updated when >5 days) ## Update config/pdb-interpro/config.yaml => output/tsv/pdb-interpro.tsv -< 2024-11-22T23:34:50 pdb-interpro +< 2024-11-30T03:01:42 pdb-interpro togoid-config config/pdb-interpro update # Success: output/tsv/pdb-interpro.tsv is updated -> 2024-11-22T23:34:51 pdb-interpro +> 2024-11-30T03:01:43 pdb-interpro Rule for TSV (output/tsv/pdb-interpro.tsv) ------------------------------ Investigating output/tsv/pdb-interpro.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:34:51 +0900 +timestamp: 2024-11-30 03:01:43 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pdb-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-pdb_ccd.tsv is newer than config/pdb-pdb_ccd/config.yaml # File output/tsv/pdb-pdb_ccd.tsv has no timestamp file -# File output/tsv/pdb-pdb_ccd.tsv is created 6.787013734325497 days ago (will be updated when >5 days) +# File output/tsv/pdb-pdb_ccd.tsv is created 7.143648533822766 days ago (will be updated when >5 days) ## Update config/pdb-pdb_ccd/config.yaml => output/tsv/pdb-pdb_ccd.tsv -< 2024-11-22T23:34:51 pdb-pdb_ccd +< 2024-11-30T03:01:44 pdb-pdb_ccd togoid-config config/pdb-pdb_ccd update # Success: output/tsv/pdb-pdb_ccd.tsv is updated -> 2024-11-22T23:34:52 pdb-pdb_ccd +> 2024-11-30T03:01:45 pdb-pdb_ccd Rule for TSV (output/tsv/pdb-pdb_ccd.tsv) ------------------------------ Investigating output/tsv/pdb-pdb_ccd.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:34:52 +0900 +timestamp: 2024-11-30 03:01:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pdb-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-pfam.tsv is newer than config/pdb-pfam/config.yaml # File output/tsv/pdb-pfam.tsv has no timestamp file -# File output/tsv/pdb-pfam.tsv is created 6.787015503341702 days ago (will be updated when >5 days) +# File output/tsv/pdb-pfam.tsv is created 7.14365267369345 days ago (will be updated when >5 days) ## Update config/pdb-pfam/config.yaml => output/tsv/pdb-pfam.tsv -< 2024-11-22T23:34:52 pdb-pfam +< 2024-11-30T03:01:45 pdb-pfam togoid-config config/pdb-pfam update # Success: output/tsv/pdb-pfam.tsv is updated -> 2024-11-22T23:34:53 pdb-pfam +> 2024-11-30T03:01:46 pdb-pfam Rule for TSV (output/tsv/pdb-pfam.tsv) ------------------------------ Investigating output/tsv/pdb-pfam.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:34:53 +0900 +timestamp: 2024-11-30 03:01:46 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pdb-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-uniprot.tsv is newer than config/pdb-uniprot/config.yaml # File output/tsv/pdb-uniprot.tsv has no timestamp file -# File output/tsv/pdb-uniprot.tsv is created 6.787013813753368 days ago (will be updated when >5 days) +# File output/tsv/pdb-uniprot.tsv is created 7.14365227420272 days ago (will be updated when >5 days) ## Update config/pdb-uniprot/config.yaml => output/tsv/pdb-uniprot.tsv -< 2024-11-22T23:34:53 pdb-uniprot +< 2024-11-30T03:01:46 pdb-uniprot togoid-config config/pdb-uniprot update # Success: output/tsv/pdb-uniprot.tsv is updated -> 2024-11-22T23:34:54 pdb-uniprot +> 2024-11-30T03:01:47 pdb-uniprot Rule for TSV (output/tsv/pdb-uniprot.tsv) ------------------------------ Investigating output/tsv/pdb-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:34:54 +0900 +timestamp: 2024-11-30 03:01:47 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pmc-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pmc-pubmed.tsv is newer than config/pmc-pubmed/config.yaml # File output/tsv/pmc-pubmed.tsv is older than input/pmc/download.lock ## Update config/pmc-pubmed/config.yaml => output/tsv/pmc-pubmed.tsv -< 2024-11-22T23:34:54 pmc-pubmed +< 2024-11-30T03:01:47 pmc-pubmed togoid-config config/pmc-pubmed update # Success: output/tsv/pmc-pubmed.tsv is updated -> 2024-11-22T23:40:38 pmc-pubmed +> 2024-11-30T03:07:41 pmc-pubmed Rule for TSV (output/tsv/pmc-pubmed.tsv) ------------------------------ Investigating output/tsv/pmc-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:40:38 +0900 +timestamp: 2024-11-30 03:07:41 +0900 pre-requisites: --output/tsv/ () ---prepare:pmc (2024-11-22 23:40:38 +0900) -latest-prerequisite time: 2024-11-22 23:40:38 +0900 +--prepare:pmc (2024-11-30 03:07:41 +0900) +latest-prerequisite time: 2024-11-30 03:07:41 +0900 ................................ -### Update TSV for prosite-prosite_prorule if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for prosite-prosite_prorule if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/prosite-prosite_prorule.tsv is newer than config/prosite-prosite_prorule/config.yaml -# File output/tsv/prosite-prosite_prorule.tsv is newer than input/prosite/download.lock -# => Preserving output/tsv/prosite-prosite_prorule.tsv +# File output/tsv/prosite-prosite_prorule.tsv is older than input/prosite/download.lock +## Update config/prosite-prosite_prorule/config.yaml => output/tsv/prosite-prosite_prorule.tsv +< 2024-11-30T03:07:41 prosite-prosite_prorule +togoid-config config/prosite-prosite_prorule update +# Success: output/tsv/prosite-prosite_prorule.tsv is updated +> 2024-11-30T03:07:42 prosite-prosite_prorule Rule for TSV (output/tsv/prosite-prosite_prorule.tsv) ------------------------------ Investigating output/tsv/prosite-prosite_prorule.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:37:39 +0900 +timestamp: 2024-11-30 03:07:42 +0900 pre-requisites: --output/tsv/ () ---prepare:prosite (2024-11-22 23:40:38 +0900) -latest-prerequisite time: 2024-11-22 23:40:38 +0900 +--prepare:prosite (2024-11-30 03:07:42 +0900) +latest-prerequisite time: 2024-11-30 03:07:42 +0900 ................................ ### Update TSV for pubchem_compound-atc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-atc.tsv is newer than config/pubchem_compound-atc/config.yaml # File output/tsv/pubchem_compound-atc.tsv has no timestamp file -# File output/tsv/pubchem_compound-atc.tsv is created 6.786981608677755 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-atc.tsv is created 7.1437859123342475 days ago (will be updated when >5 days) ## Update config/pubchem_compound-atc/config.yaml => output/tsv/pubchem_compound-atc.tsv -< 2024-11-22T23:40:38 pubchem_compound-atc +< 2024-11-30T03:07:42 pubchem_compound-atc togoid-config config/pubchem_compound-atc update # Success: output/tsv/pubchem_compound-atc.tsv is updated -> 2024-11-22T23:40:39 pubchem_compound-atc +> 2024-11-30T03:07:42 pubchem_compound-atc Rule for TSV (output/tsv/pubchem_compound-atc.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-atc.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:40:39 +0900 +timestamp: 2024-11-30 03:07:42 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pubchem_compound-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-chebi.tsv is newer than config/pubchem_compound-chebi/config.yaml # File output/tsv/pubchem_compound-chebi.tsv has no timestamp file -# File output/tsv/pubchem_compound-chebi.tsv is created 6.786980428810127 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-chebi.tsv is created 7.143782171319398 days ago (will be updated when >5 days) ## Update config/pubchem_compound-chebi/config.yaml => output/tsv/pubchem_compound-chebi.tsv -< 2024-11-22T23:40:39 pubchem_compound-chebi +< 2024-11-30T03:07:42 pubchem_compound-chebi togoid-config config/pubchem_compound-chebi update # Success: output/tsv/pubchem_compound-chebi.tsv is updated -> 2024-11-22T23:40:40 pubchem_compound-chebi +> 2024-11-30T03:07:43 pubchem_compound-chebi Rule for TSV (output/tsv/pubchem_compound-chebi.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-chebi.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:40:40 +0900 +timestamp: 2024-11-30 03:07:43 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pubchem_compound-chembl_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-chembl_compound.tsv is newer than config/pubchem_compound-chembl_compound/config.yaml # File output/tsv/pubchem_compound-chembl_compound.tsv has no timestamp file -# File output/tsv/pubchem_compound-chembl_compound.tsv is created 6.786931693830799 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-chembl_compound.tsv is created 7.143715138087291 days ago (will be updated when >5 days) ## Update config/pubchem_compound-chembl_compound/config.yaml => output/tsv/pubchem_compound-chembl_compound.tsv -< 2024-11-22T23:40:40 pubchem_compound-chembl_compound +< 2024-11-30T03:07:43 pubchem_compound-chembl_compound togoid-config config/pubchem_compound-chembl_compound update # Success: output/tsv/pubchem_compound-chembl_compound.tsv is updated -> 2024-11-22T23:40:46 pubchem_compound-chembl_compound +> 2024-11-30T03:07:48 pubchem_compound-chembl_compound Rule for TSV (output/tsv/pubchem_compound-chembl_compound.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-chembl_compound.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:40:46 +0900 +timestamp: 2024-11-30 03:07:48 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pubchem_compound-drugbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-drugbank.tsv is newer than config/pubchem_compound-drugbank/config.yaml # File output/tsv/pubchem_compound-drugbank.tsv has no timestamp file -# File output/tsv/pubchem_compound-drugbank.tsv is created 6.787002745954953 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-drugbank.tsv is created 7.143770053293392 days ago (will be updated when >5 days) ## Update config/pubchem_compound-drugbank/config.yaml => output/tsv/pubchem_compound-drugbank.tsv -< 2024-11-22T23:40:46 pubchem_compound-drugbank +< 2024-11-30T03:07:48 pubchem_compound-drugbank togoid-config config/pubchem_compound-drugbank update # Success: output/tsv/pubchem_compound-drugbank.tsv is updated -> 2024-11-22T23:40:46 pubchem_compound-drugbank +> 2024-11-30T03:07:49 pubchem_compound-drugbank Rule for TSV (output/tsv/pubchem_compound-drugbank.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-drugbank.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:40:46 +0900 +timestamp: 2024-11-30 03:07:49 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pubchem_compound-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-glytoucan.tsv is newer than config/pubchem_compound-glytoucan/config.yaml # File output/tsv/pubchem_compound-glytoucan.tsv has no timestamp file -# File output/tsv/pubchem_compound-glytoucan.tsv is created 6.787001337453808 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-glytoucan.tsv is created 7.143768788188773 days ago (will be updated when >5 days) ## Update config/pubchem_compound-glytoucan/config.yaml => output/tsv/pubchem_compound-glytoucan.tsv -< 2024-11-22T23:40:46 pubchem_compound-glytoucan +< 2024-11-30T03:07:49 pubchem_compound-glytoucan togoid-config config/pubchem_compound-glytoucan update # Success: output/tsv/pubchem_compound-glytoucan.tsv is updated -> 2024-11-22T23:40:47 pubchem_compound-glytoucan +> 2024-11-30T03:07:49 pubchem_compound-glytoucan Rule for TSV (output/tsv/pubchem_compound-glytoucan.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-glytoucan.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:40:47 +0900 +timestamp: 2024-11-30 03:07:49 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pubchem_compound-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-inchi_key.tsv is newer than config/pubchem_compound-inchi_key/config.yaml # File output/tsv/pubchem_compound-inchi_key.tsv has no timestamp file -# File output/tsv/pubchem_compound-inchi_key.tsv is created 6.782541012860695 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-inchi_key.tsv is created 7.1375457571120595 days ago (will be updated when >5 days) ## Update config/pubchem_compound-inchi_key/config.yaml => output/tsv/pubchem_compound-inchi_key.tsv -< 2024-11-22T23:40:47 pubchem_compound-inchi_key +< 2024-11-30T03:07:49 pubchem_compound-inchi_key togoid-config config/pubchem_compound-inchi_key update # Success: output/tsv/pubchem_compound-inchi_key.tsv is updated -> 2024-11-22T23:49:45 pubchem_compound-inchi_key +> 2024-11-30T03:16:10 pubchem_compound-inchi_key Rule for TSV (output/tsv/pubchem_compound-inchi_key.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-inchi_key.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:49:45 +0900 +timestamp: 2024-11-30 03:16:10 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pubchem_pathway-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-ncbigene.tsv is newer than config/pubchem_pathway-ncbigene/config.yaml # File output/tsv/pubchem_pathway-ncbigene.tsv has no timestamp file -# File output/tsv/pubchem_pathway-ncbigene.tsv is created 6.788764454904548 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-ncbigene.tsv is created 7.1433390983961 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-ncbigene/config.yaml => output/tsv/pubchem_pathway-ncbigene.tsv -< 2024-11-22T23:49:45 pubchem_pathway-ncbigene +< 2024-11-30T03:16:10 pubchem_pathway-ncbigene togoid-config config/pubchem_pathway-ncbigene update # Success: output/tsv/pubchem_pathway-ncbigene.tsv is updated -> 2024-11-22T23:49:46 pubchem_pathway-ncbigene +> 2024-11-30T03:16:11 pubchem_pathway-ncbigene Rule for TSV (output/tsv/pubchem_pathway-ncbigene.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:49:46 +0900 +timestamp: 2024-11-30 03:16:11 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pubchem_pathway-pathbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-pathbank.tsv is newer than config/pubchem_pathway-pathbank/config.yaml # File output/tsv/pubchem_pathway-pathbank.tsv has no timestamp file -# File output/tsv/pubchem_pathway-pathbank.tsv is created 6.788765799928484 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-pathbank.tsv is created 7.143338652882107 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-pathbank/config.yaml => output/tsv/pubchem_pathway-pathbank.tsv -< 2024-11-22T23:49:46 pubchem_pathway-pathbank +< 2024-11-30T03:16:11 pubchem_pathway-pathbank togoid-config config/pubchem_pathway-pathbank update # Success: output/tsv/pubchem_pathway-pathbank.tsv is updated -> 2024-11-22T23:49:46 pubchem_pathway-pathbank +> 2024-11-30T03:16:11 pubchem_pathway-pathbank Rule for TSV (output/tsv/pubchem_pathway-pathbank.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-pathbank.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:49:46 +0900 +timestamp: 2024-11-30 03:16:11 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pubchem_pathway-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-pubchem_compound.tsv is newer than config/pubchem_pathway-pubchem_compound/config.yaml # File output/tsv/pubchem_pathway-pubchem_compound.tsv has no timestamp file -# File output/tsv/pubchem_pathway-pubchem_compound.tsv is created 6.788737259048298 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-pubchem_compound.tsv is created 7.143312283569768 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-pubchem_compound/config.yaml => output/tsv/pubchem_pathway-pubchem_compound.tsv -< 2024-11-22T23:49:46 pubchem_pathway-pubchem_compound +< 2024-11-30T03:16:11 pubchem_pathway-pubchem_compound togoid-config config/pubchem_pathway-pubchem_compound update # Success: output/tsv/pubchem_pathway-pubchem_compound.tsv is updated -> 2024-11-22T23:49:49 pubchem_pathway-pubchem_compound +> 2024-11-30T03:16:14 pubchem_pathway-pubchem_compound Rule for TSV (output/tsv/pubchem_pathway-pubchem_compound.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-pubchem_compound.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:49:49 +0900 +timestamp: 2024-11-30 03:16:14 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pubchem_pathway-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-reactome_pathway.tsv is newer than config/pubchem_pathway-reactome_pathway/config.yaml # File output/tsv/pubchem_pathway-reactome_pathway.tsv has no timestamp file -# File output/tsv/pubchem_pathway-reactome_pathway.tsv is created 6.788765318872511 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-reactome_pathway.tsv is created 7.143339177203392 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-reactome_pathway/config.yaml => output/tsv/pubchem_pathway-reactome_pathway.tsv -< 2024-11-22T23:49:49 pubchem_pathway-reactome_pathway +< 2024-11-30T03:16:14 pubchem_pathway-reactome_pathway togoid-config config/pubchem_pathway-reactome_pathway update # Success: output/tsv/pubchem_pathway-reactome_pathway.tsv is updated -> 2024-11-22T23:49:50 pubchem_pathway-reactome_pathway +> 2024-11-30T03:16:15 pubchem_pathway-reactome_pathway Rule for TSV (output/tsv/pubchem_pathway-reactome_pathway.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-reactome_pathway.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:49:50 +0900 +timestamp: 2024-11-30 03:16:15 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pubchem_pathway-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-uniprot.tsv is newer than config/pubchem_pathway-uniprot/config.yaml # File output/tsv/pubchem_pathway-uniprot.tsv has no timestamp file -# File output/tsv/pubchem_pathway-uniprot.tsv is created 6.788749721923438 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-uniprot.tsv is created 7.143326894714677 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-uniprot/config.yaml => output/tsv/pubchem_pathway-uniprot.tsv -< 2024-11-22T23:49:50 pubchem_pathway-uniprot +< 2024-11-30T03:16:15 pubchem_pathway-uniprot togoid-config config/pubchem_pathway-uniprot update # Success: output/tsv/pubchem_pathway-uniprot.tsv is updated -> 2024-11-22T23:49:51 pubchem_pathway-uniprot +> 2024-11-30T03:16:16 pubchem_pathway-uniprot Rule for TSV (output/tsv/pubchem_pathway-uniprot.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:49:51 +0900 +timestamp: 2024-11-30 03:16:16 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for pubchem_pathway-wikipathways if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-wikipathways.tsv is newer than config/pubchem_pathway-wikipathways/config.yaml # File output/tsv/pubchem_pathway-wikipathways.tsv has no timestamp file -# File output/tsv/pubchem_pathway-wikipathways.tsv is created 6.788763437736817 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-wikipathways.tsv is created 7.14333887191324 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-wikipathways/config.yaml => output/tsv/pubchem_pathway-wikipathways.tsv -< 2024-11-22T23:49:51 pubchem_pathway-wikipathways +< 2024-11-30T03:16:16 pubchem_pathway-wikipathways togoid-config config/pubchem_pathway-wikipathways update # Success: output/tsv/pubchem_pathway-wikipathways.tsv is updated -> 2024-11-22T23:49:52 pubchem_pathway-wikipathways +> 2024-11-30T03:16:17 pubchem_pathway-wikipathways Rule for TSV (output/tsv/pubchem_pathway-wikipathways.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-wikipathways.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-22 23:49:52 +0900 +timestamp: 2024-11-30 03:16:17 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for reactome_pathway-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-chebi.tsv is newer than config/reactome_pathway-chebi/config.yaml # File output/tsv/reactome_pathway-chebi.tsv has no timestamp file -# File output/tsv/reactome_pathway-chebi.tsv is created 6.788756738431354 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-chebi.tsv is created 7.143337682558888 days ago (will be updated when >5 days) ## Update config/reactome_pathway-chebi/config.yaml => output/tsv/reactome_pathway-chebi.tsv -< 2024-11-22T23:49:52 reactome_pathway-chebi +< 2024-11-30T03:16:17 reactome_pathway-chebi togoid-config config/reactome_pathway-chebi update # Success: output/tsv/reactome_pathway-chebi.tsv is updated -> 2024-11-22T23:49:52 reactome_pathway-chebi +> 2024-11-30T03:16:18 reactome_pathway-chebi Rule for TSV (output/tsv/reactome_pathway-chebi.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:49:52 +0900 +timestamp: 2024-11-30 03:16:18 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-22 23:49:52 +0900) -latest-prerequisite time: 2024-11-22 23:49:52 +0900 +--prepare:reactome (2024-11-30 03:16:18 +0900) +latest-prerequisite time: 2024-11-30 03:16:18 +0900 ................................ ### Update TSV for reactome_pathway-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-go.tsv is newer than config/reactome_pathway-go/config.yaml # File output/tsv/reactome_pathway-go.tsv has no timestamp file -# File output/tsv/reactome_pathway-go.tsv is created 6.788757989932442 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-go.tsv is created 7.14334496991529 days ago (will be updated when >5 days) ## Update config/reactome_pathway-go/config.yaml => output/tsv/reactome_pathway-go.tsv -< 2024-11-22T23:49:52 reactome_pathway-go +< 2024-11-30T03:16:18 reactome_pathway-go togoid-config config/reactome_pathway-go update # Success: output/tsv/reactome_pathway-go.tsv is updated -> 2024-11-22T23:49:53 reactome_pathway-go +> 2024-11-30T03:16:18 reactome_pathway-go Rule for TSV (output/tsv/reactome_pathway-go.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:49:53 +0900 +timestamp: 2024-11-30 03:16:18 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-22 23:49:53 +0900) -latest-prerequisite time: 2024-11-22 23:49:53 +0900 +--prepare:reactome (2024-11-30 03:16:18 +0900) +latest-prerequisite time: 2024-11-30 03:16:18 +0900 ................................ ### Update TSV for reactome_pathway-iuphar_ligand if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-iuphar_ligand.tsv is newer than config/reactome_pathway-iuphar_ligand/config.yaml # File output/tsv/reactome_pathway-iuphar_ligand.tsv has no timestamp file -# File output/tsv/reactome_pathway-iuphar_ligand.tsv is created 6.7887591076720595 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-iuphar_ligand.tsv is created 7.143347138654004 days ago (will be updated when >5 days) ## Update config/reactome_pathway-iuphar_ligand/config.yaml => output/tsv/reactome_pathway-iuphar_ligand.tsv -< 2024-11-22T23:49:53 reactome_pathway-iuphar_ligand +< 2024-11-30T03:16:18 reactome_pathway-iuphar_ligand togoid-config config/reactome_pathway-iuphar_ligand update # Success: output/tsv/reactome_pathway-iuphar_ligand.tsv is updated -> 2024-11-22T23:49:53 reactome_pathway-iuphar_ligand +> 2024-11-30T03:16:19 reactome_pathway-iuphar_ligand Rule for TSV (output/tsv/reactome_pathway-iuphar_ligand.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-iuphar_ligand.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:49:53 +0900 +timestamp: 2024-11-30 03:16:19 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-22 23:49:53 +0900) -latest-prerequisite time: 2024-11-22 23:49:53 +0900 +--prepare:reactome (2024-11-30 03:16:19 +0900) +latest-prerequisite time: 2024-11-30 03:16:19 +0900 ................................ ### Update TSV for reactome_pathway-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-mirbase.tsv is newer than config/reactome_pathway-mirbase/config.yaml # File output/tsv/reactome_pathway-mirbase.tsv has no timestamp file -# File output/tsv/reactome_pathway-mirbase.tsv is created 6.788758900232894 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-mirbase.tsv is created 7.143348874032454 days ago (will be updated when >5 days) ## Update config/reactome_pathway-mirbase/config.yaml => output/tsv/reactome_pathway-mirbase.tsv -< 2024-11-22T23:49:53 reactome_pathway-mirbase +< 2024-11-30T03:16:19 reactome_pathway-mirbase togoid-config config/reactome_pathway-mirbase update # Success: output/tsv/reactome_pathway-mirbase.tsv is updated -> 2024-11-22T23:49:53 reactome_pathway-mirbase +> 2024-11-30T03:16:19 reactome_pathway-mirbase Rule for TSV (output/tsv/reactome_pathway-mirbase.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:49:53 +0900 +timestamp: 2024-11-30 03:16:19 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-22 23:49:53 +0900) -latest-prerequisite time: 2024-11-22 23:49:53 +0900 +--prepare:reactome (2024-11-30 03:16:19 +0900) +latest-prerequisite time: 2024-11-30 03:16:19 +0900 ................................ ### Update TSV for reactome_pathway-reactome_reaction if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-reactome_reaction.tsv is newer than config/reactome_pathway-reactome_reaction/config.yaml # File output/tsv/reactome_pathway-reactome_reaction.tsv has no timestamp file -# File output/tsv/reactome_pathway-reactome_reaction.tsv is created 6.788748118984351 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-reactome_reaction.tsv is created 7.143338112876967 days ago (will be updated when >5 days) ## Update config/reactome_pathway-reactome_reaction/config.yaml => output/tsv/reactome_pathway-reactome_reaction.tsv -< 2024-11-22T23:49:53 reactome_pathway-reactome_reaction +< 2024-11-30T03:16:19 reactome_pathway-reactome_reaction togoid-config config/reactome_pathway-reactome_reaction update # Success: output/tsv/reactome_pathway-reactome_reaction.tsv is updated -> 2024-11-22T23:49:54 reactome_pathway-reactome_reaction +> 2024-11-30T03:16:20 reactome_pathway-reactome_reaction Rule for TSV (output/tsv/reactome_pathway-reactome_reaction.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-reactome_reaction.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:49:54 +0900 +timestamp: 2024-11-30 03:16:20 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-22 23:49:54 +0900) -latest-prerequisite time: 2024-11-22 23:49:54 +0900 +--prepare:reactome (2024-11-30 03:16:20 +0900) +latest-prerequisite time: 2024-11-30 03:16:20 +0900 ................................ ### Update TSV for reactome_pathway-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-uniprot.tsv is newer than config/reactome_pathway-uniprot/config.yaml # File output/tsv/reactome_pathway-uniprot.tsv has no timestamp file -# File output/tsv/reactome_pathway-uniprot.tsv is created 6.7887377409731835 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-uniprot.tsv is created 7.143336690130162 days ago (will be updated when >5 days) ## Update config/reactome_pathway-uniprot/config.yaml => output/tsv/reactome_pathway-uniprot.tsv -< 2024-11-22T23:49:54 reactome_pathway-uniprot +< 2024-11-30T03:16:20 reactome_pathway-uniprot togoid-config config/reactome_pathway-uniprot update # Success: output/tsv/reactome_pathway-uniprot.tsv is updated -> 2024-11-22T23:49:56 reactome_pathway-uniprot +> 2024-11-30T03:16:23 reactome_pathway-uniprot Rule for TSV (output/tsv/reactome_pathway-uniprot.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:49:56 +0900 +timestamp: 2024-11-30 03:16:23 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-22 23:49:56 +0900) -latest-prerequisite time: 2024-11-22 23:49:56 +0900 +--prepare:reactome (2024-11-30 03:16:23 +0900) +latest-prerequisite time: 2024-11-30 03:16:23 +0900 ................................ ### Update TSV for reactome_reaction-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-chebi.tsv is newer than config/reactome_reaction-chebi/config.yaml # File output/tsv/reactome_reaction-chebi.tsv has no timestamp file -# File output/tsv/reactome_reaction-chebi.tsv is created 6.788747493192975 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-chebi.tsv is created 7.143369797583045 days ago (will be updated when >5 days) ## Update config/reactome_reaction-chebi/config.yaml => output/tsv/reactome_reaction-chebi.tsv -< 2024-11-22T23:49:56 reactome_reaction-chebi +< 2024-11-30T03:16:23 reactome_reaction-chebi togoid-config config/reactome_reaction-chebi update # Success: output/tsv/reactome_reaction-chebi.tsv is updated -> 2024-11-22T23:49:56 reactome_reaction-chebi +> 2024-11-30T03:16:24 reactome_reaction-chebi Rule for TSV (output/tsv/reactome_reaction-chebi.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:49:56 +0900 +timestamp: 2024-11-30 03:16:24 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-22 23:49:56 +0900) -latest-prerequisite time: 2024-11-22 23:49:56 +0900 +--prepare:reactome (2024-11-30 03:16:24 +0900) +latest-prerequisite time: 2024-11-30 03:16:24 +0900 ................................ ### Update TSV for reactome_reaction-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-go.tsv is newer than config/reactome_reaction-go/config.yaml # File output/tsv/reactome_reaction-go.tsv has no timestamp file -# File output/tsv/reactome_reaction-go.tsv is created 6.788748317007708 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-go.tsv is created 7.143376635617095 days ago (will be updated when >5 days) ## Update config/reactome_reaction-go/config.yaml => output/tsv/reactome_reaction-go.tsv -< 2024-11-22T23:49:56 reactome_reaction-go +< 2024-11-30T03:16:24 reactome_reaction-go togoid-config config/reactome_reaction-go update # Success: output/tsv/reactome_reaction-go.tsv is updated -> 2024-11-22T23:49:57 reactome_reaction-go +> 2024-11-30T03:16:25 reactome_reaction-go Rule for TSV (output/tsv/reactome_reaction-go.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:49:57 +0900 +timestamp: 2024-11-30 03:16:25 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-22 23:49:57 +0900) -latest-prerequisite time: 2024-11-22 23:49:57 +0900 +--prepare:reactome (2024-11-30 03:16:25 +0900) +latest-prerequisite time: 2024-11-30 03:16:25 +0900 ................................ ### Update TSV for reactome_reaction-iuphar_ligand if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-iuphar_ligand.tsv is newer than config/reactome_reaction-iuphar_ligand/config.yaml # File output/tsv/reactome_reaction-iuphar_ligand.tsv has no timestamp file -# File output/tsv/reactome_reaction-iuphar_ligand.tsv is created 6.78874909726567 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-iuphar_ligand.tsv is created 7.143378297367871 days ago (will be updated when >5 days) ## Update config/reactome_reaction-iuphar_ligand/config.yaml => output/tsv/reactome_reaction-iuphar_ligand.tsv -< 2024-11-22T23:49:57 reactome_reaction-iuphar_ligand +< 2024-11-30T03:16:25 reactome_reaction-iuphar_ligand togoid-config config/reactome_reaction-iuphar_ligand update # Success: output/tsv/reactome_reaction-iuphar_ligand.tsv is updated -> 2024-11-22T23:49:57 reactome_reaction-iuphar_ligand +> 2024-11-30T03:16:25 reactome_reaction-iuphar_ligand Rule for TSV (output/tsv/reactome_reaction-iuphar_ligand.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-iuphar_ligand.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:49:57 +0900 +timestamp: 2024-11-30 03:16:25 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-22 23:49:57 +0900) -latest-prerequisite time: 2024-11-22 23:49:57 +0900 +--prepare:reactome (2024-11-30 03:16:25 +0900) +latest-prerequisite time: 2024-11-30 03:16:25 +0900 ................................ ### Update TSV for reactome_reaction-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-mirbase.tsv is newer than config/reactome_reaction-mirbase/config.yaml # File output/tsv/reactome_reaction-mirbase.tsv has no timestamp file -# File output/tsv/reactome_reaction-mirbase.tsv is created 6.788749494879086 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-mirbase.tsv is created 7.1433785307389 days ago (will be updated when >5 days) ## Update config/reactome_reaction-mirbase/config.yaml => output/tsv/reactome_reaction-mirbase.tsv -< 2024-11-22T23:49:57 reactome_reaction-mirbase +< 2024-11-30T03:16:25 reactome_reaction-mirbase togoid-config config/reactome_reaction-mirbase update # Success: output/tsv/reactome_reaction-mirbase.tsv is updated -> 2024-11-22T23:49:57 reactome_reaction-mirbase +> 2024-11-30T03:16:25 reactome_reaction-mirbase Rule for TSV (output/tsv/reactome_reaction-mirbase.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:49:57 +0900 +timestamp: 2024-11-30 03:16:25 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-22 23:49:57 +0900) -latest-prerequisite time: 2024-11-22 23:49:57 +0900 +--prepare:reactome (2024-11-30 03:16:25 +0900) +latest-prerequisite time: 2024-11-30 03:16:25 +0900 ................................ ### Update TSV for reactome_reaction-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-uniprot.tsv is newer than config/reactome_reaction-uniprot/config.yaml # File output/tsv/reactome_reaction-uniprot.tsv has no timestamp file -# File output/tsv/reactome_reaction-uniprot.tsv is created 6.7887311320041555 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-uniprot.tsv is created 7.143367876066667 days ago (will be updated when >5 days) ## Update config/reactome_reaction-uniprot/config.yaml => output/tsv/reactome_reaction-uniprot.tsv -< 2024-11-22T23:49:57 reactome_reaction-uniprot +< 2024-11-30T03:16:25 reactome_reaction-uniprot togoid-config config/reactome_reaction-uniprot update # Success: output/tsv/reactome_reaction-uniprot.tsv is updated -> 2024-11-22T23:49:58 reactome_reaction-uniprot +> 2024-11-30T03:16:26 reactome_reaction-uniprot Rule for TSV (output/tsv/reactome_reaction-uniprot.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:49:58 +0900 +timestamp: 2024-11-30 03:16:26 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-11-22 23:49:58 +0900) -latest-prerequisite time: 2024-11-22 23:49:58 +0900 +--prepare:reactome (2024-11-30 03:16:26 +0900) +latest-prerequisite time: 2024-11-30 03:16:26 +0900 ................................ ### Update TSV for refseq_protein-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/refseq_protein-uniprot.tsv is newer than config/refseq_protein-uniprot/config.yaml # File output/tsv/refseq_protein-uniprot.tsv is older than input/refseq_protein/download.lock ## Update config/refseq_protein-uniprot/config.yaml => output/tsv/refseq_protein-uniprot.tsv -< 2024-11-22T23:49:58 refseq_protein-uniprot +< 2024-11-30T03:16:26 refseq_protein-uniprot togoid-config config/refseq_protein-uniprot update # Success: output/tsv/refseq_protein-uniprot.tsv is updated -> 2024-11-22T23:56:25 refseq_protein-uniprot +> 2024-11-30T03:21:56 refseq_protein-uniprot Rule for TSV (output/tsv/refseq_protein-uniprot.tsv) ------------------------------ Investigating output/tsv/refseq_protein-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:56:25 +0900 +timestamp: 2024-11-30 03:21:56 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_protein (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--prepare:refseq_protein (2024-11-30 03:21:56 +0900) +latest-prerequisite time: 2024-11-30 03:21:56 +0900 ................................ ### Update TSV for refseq_rna-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4346,8 +4366,8 @@ task needed: true timestamp: 2024-11-16 05:24:22 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--prepare:refseq_rna (2024-11-30 03:21:56 +0900) +latest-prerequisite time: 2024-11-30 03:21:56 +0900 ................................ ### Update TSV for refseq_rna-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4362,8 +4382,8 @@ task needed: true timestamp: 2024-11-16 05:27:15 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--prepare:refseq_rna (2024-11-30 03:21:56 +0900) +latest-prerequisite time: 2024-11-30 03:21:56 +0900 ................................ ### Update TSV for refseq_rna-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4378,8 +4398,8 @@ task needed: true timestamp: 2024-11-16 05:31:03 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--prepare:refseq_rna (2024-11-30 03:21:56 +0900) +latest-prerequisite time: 2024-11-30 03:21:56 +0900 ................................ ### Update TSV for refseq_rna-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4394,8 +4414,8 @@ task needed: true timestamp: 2024-11-16 05:32:50 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--prepare:refseq_rna (2024-11-30 03:21:56 +0900) +latest-prerequisite time: 2024-11-30 03:21:56 +0900 ................................ ### Update TSV for refseq_rna-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4410,8 +4430,8 @@ task needed: true timestamp: 2024-11-16 05:34:56 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--prepare:refseq_rna (2024-11-30 03:21:56 +0900) +latest-prerequisite time: 2024-11-30 03:21:56 +0900 ................................ ### Update TSV for refseq_rna-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4426,8 +4446,8 @@ task needed: true timestamp: 2024-11-16 05:38:35 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--prepare:refseq_rna (2024-11-30 03:21:56 +0900) +latest-prerequisite time: 2024-11-30 03:21:56 +0900 ................................ ### Update TSV for refseq_rna-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4442,1252 +4462,1356 @@ task needed: true timestamp: 2024-11-16 05:41:38 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--prepare:refseq_rna (2024-11-30 03:21:56 +0900) +latest-prerequisite time: 2024-11-30 03:21:56 +0900 ................................ -### Update TSV for rhea-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for rhea-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/rhea-chebi.tsv is newer than config/rhea-chebi/config.yaml -# File output/tsv/rhea-chebi.tsv is newer than input/rhea/download.lock -# => Preserving output/tsv/rhea-chebi.tsv +# File output/tsv/rhea-chebi.tsv is older than input/rhea/download.lock +## Update config/rhea-chebi/config.yaml => output/tsv/rhea-chebi.tsv +< 2024-11-30T03:21:56 rhea-chebi +togoid-config config/rhea-chebi update +# Success: output/tsv/rhea-chebi.tsv is updated +> 2024-11-30T03:21:57 rhea-chebi Rule for TSV (output/tsv/rhea-chebi.tsv) ------------------------------ Investigating output/tsv/rhea-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:54:59 +0900 +timestamp: 2024-11-30 03:21:57 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--prepare:rhea (2024-11-30 03:21:57 +0900) +latest-prerequisite time: 2024-11-30 03:21:57 +0900 ................................ -### Update TSV for rhea-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for rhea-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/rhea-ec.tsv is newer than config/rhea-ec/config.yaml -# File output/tsv/rhea-ec.tsv is newer than input/rhea/download.lock -# => Preserving output/tsv/rhea-ec.tsv +# File output/tsv/rhea-ec.tsv is older than input/rhea/download.lock +## Update config/rhea-ec/config.yaml => output/tsv/rhea-ec.tsv +< 2024-11-30T03:21:57 rhea-ec +togoid-config config/rhea-ec update +# Success: output/tsv/rhea-ec.tsv is updated +> 2024-11-30T03:21:58 rhea-ec Rule for TSV (output/tsv/rhea-ec.tsv) ------------------------------ Investigating output/tsv/rhea-ec.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:55:00 +0900 +timestamp: 2024-11-30 03:21:58 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--prepare:rhea (2024-11-30 03:21:58 +0900) +latest-prerequisite time: 2024-11-30 03:21:58 +0900 ................................ -### Update TSV for rhea-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for rhea-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/rhea-go.tsv is newer than config/rhea-go/config.yaml -# File output/tsv/rhea-go.tsv is newer than input/rhea/download.lock -# => Preserving output/tsv/rhea-go.tsv +# File output/tsv/rhea-go.tsv is older than input/rhea/download.lock +## Update config/rhea-go/config.yaml => output/tsv/rhea-go.tsv +< 2024-11-30T03:21:58 rhea-go +togoid-config config/rhea-go update +# Success: output/tsv/rhea-go.tsv is updated +> 2024-11-30T03:21:58 rhea-go Rule for TSV (output/tsv/rhea-go.tsv) ------------------------------ Investigating output/tsv/rhea-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:55:00 +0900 +timestamp: 2024-11-30 03:21:58 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--prepare:rhea (2024-11-30 03:21:58 +0900) +latest-prerequisite time: 2024-11-30 03:21:58 +0900 ................................ -### Update TSV for rhea-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for rhea-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/rhea-pubmed.tsv is newer than config/rhea-pubmed/config.yaml -# File output/tsv/rhea-pubmed.tsv is newer than input/rhea/download.lock -# => Preserving output/tsv/rhea-pubmed.tsv +# File output/tsv/rhea-pubmed.tsv is older than input/rhea/download.lock +## Update config/rhea-pubmed/config.yaml => output/tsv/rhea-pubmed.tsv +< 2024-11-30T03:21:58 rhea-pubmed +togoid-config config/rhea-pubmed update +# Success: output/tsv/rhea-pubmed.tsv is updated +> 2024-11-30T03:21:59 rhea-pubmed Rule for TSV (output/tsv/rhea-pubmed.tsv) ------------------------------ Investigating output/tsv/rhea-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:55:02 +0900 +timestamp: 2024-11-30 03:21:58 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--prepare:rhea (2024-11-30 03:21:59 +0900) +latest-prerequisite time: 2024-11-30 03:21:59 +0900 ................................ -### Update TSV for rhea-reactome_reaction if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for rhea-reactome_reaction if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/rhea-reactome_reaction.tsv is newer than config/rhea-reactome_reaction/config.yaml -# File output/tsv/rhea-reactome_reaction.tsv is newer than input/rhea/download.lock -# => Preserving output/tsv/rhea-reactome_reaction.tsv +# File output/tsv/rhea-reactome_reaction.tsv is older than input/rhea/download.lock +## Update config/rhea-reactome_reaction/config.yaml => output/tsv/rhea-reactome_reaction.tsv +< 2024-11-30T03:21:59 rhea-reactome_reaction +togoid-config config/rhea-reactome_reaction update +# Success: output/tsv/rhea-reactome_reaction.tsv is updated +> 2024-11-30T03:21:59 rhea-reactome_reaction Rule for TSV (output/tsv/rhea-reactome_reaction.tsv) ------------------------------ Investigating output/tsv/rhea-reactome_reaction.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:55:03 +0900 +timestamp: 2024-11-30 03:21:59 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--prepare:rhea (2024-11-30 03:21:59 +0900) +latest-prerequisite time: 2024-11-30 03:21:59 +0900 ................................ -### Update TSV for rhea-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for rhea-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/rhea-uniprot.tsv is newer than config/rhea-uniprot/config.yaml -# File output/tsv/rhea-uniprot.tsv is newer than input/rhea/download.lock -# => Preserving output/tsv/rhea-uniprot.tsv +# File output/tsv/rhea-uniprot.tsv is older than input/rhea/download.lock +## Update config/rhea-uniprot/config.yaml => output/tsv/rhea-uniprot.tsv +< 2024-11-30T03:21:59 rhea-uniprot +togoid-config config/rhea-uniprot update +# Success: output/tsv/rhea-uniprot.tsv is updated +> 2024-11-30T03:22:39 rhea-uniprot Rule for TSV (output/tsv/rhea-uniprot.tsv) ------------------------------ Investigating output/tsv/rhea-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:55:41 +0900 +timestamp: 2024-11-30 03:22:39 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--prepare:rhea (2024-11-30 03:22:39 +0900) +latest-prerequisite time: 2024-11-30 03:22:39 +0900 ................................ ### Update TSV for sra_accession-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-bioproject.tsv is newer than config/sra_accession-bioproject/config.yaml # File output/tsv/sra_accession-bioproject.tsv has no timestamp file -# File output/tsv/sra_accession-bioproject.tsv is created 6.758292464129526 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-bioproject.tsv is created 7.141439744070799 days ago (will be updated when >5 days) ## Update config/sra_accession-bioproject/config.yaml => output/tsv/sra_accession-bioproject.tsv -< 2024-11-22T23:56:25 sra_accession-bioproject +< 2024-11-30T03:22:39 sra_accession-bioproject togoid-config config/sra_accession-bioproject update # Success: output/tsv/sra_accession-bioproject.tsv is updated -> 2024-11-22T23:58:59 sra_accession-bioproject +> 2024-11-30T03:25:15 sra_accession-bioproject Rule for TSV (output/tsv/sra_accession-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_accession-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-22 23:58:59 +0900 +timestamp: 2024-11-30 03:25:15 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-22 23:58:59 +0900) -latest-prerequisite time: 2024-11-22 23:58:59 +0900 +--prepare:sra (2024-11-30 03:25:15 +0900) +latest-prerequisite time: 2024-11-30 03:25:15 +0900 ................................ ### Update TSV for sra_accession-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-biosample.tsv is newer than config/sra_accession-biosample/config.yaml # File output/tsv/sra_accession-biosample.tsv has no timestamp file -# File output/tsv/sra_accession-biosample.tsv is created 6.754229743601076 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-biosample.tsv is created 7.1374693072843405 days ago (will be updated when >5 days) ## Update config/sra_accession-biosample/config.yaml => output/tsv/sra_accession-biosample.tsv -< 2024-11-22T23:58:59 sra_accession-biosample +< 2024-11-30T03:25:15 sra_accession-biosample togoid-config config/sra_accession-biosample update # Success: output/tsv/sra_accession-biosample.tsv is updated -> 2024-11-23T00:07:17 sra_accession-biosample +> 2024-11-30T03:33:39 sra_accession-biosample Rule for TSV (output/tsv/sra_accession-biosample.tsv) ------------------------------ Investigating output/tsv/sra_accession-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 00:07:17 +0900 +timestamp: 2024-11-30 03:33:39 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 00:07:17 +0900) -latest-prerequisite time: 2024-11-23 00:07:17 +0900 +--prepare:sra (2024-11-30 03:33:39 +0900) +latest-prerequisite time: 2024-11-30 03:33:39 +0900 ................................ ### Update TSV for sra_accession-sra_analysis if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_analysis.tsv is newer than config/sra_accession-sra_analysis/config.yaml # File output/tsv/sra_accession-sra_analysis.tsv has no timestamp file -# File output/tsv/sra_accession-sra_analysis.tsv is created 6.759176875650926 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_analysis.tsv is created 7.142512731403472 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_analysis/config.yaml => output/tsv/sra_accession-sra_analysis.tsv -< 2024-11-23T00:07:17 sra_accession-sra_analysis +< 2024-11-30T03:33:39 sra_accession-sra_analysis togoid-config config/sra_accession-sra_analysis update # Success: output/tsv/sra_accession-sra_analysis.tsv is updated -> 2024-11-23T00:08:26 sra_accession-sra_analysis +> 2024-11-30T03:34:49 sra_accession-sra_analysis Rule for TSV (output/tsv/sra_accession-sra_analysis.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_analysis.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 00:08:26 +0900 +timestamp: 2024-11-30 03:34:49 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 00:08:26 +0900) -latest-prerequisite time: 2024-11-23 00:08:26 +0900 +--prepare:sra (2024-11-30 03:34:49 +0900) +latest-prerequisite time: 2024-11-30 03:34:49 +0900 ................................ ### Update TSV for sra_accession-sra_experiment if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_experiment.tsv is newer than config/sra_accession-sra_experiment/config.yaml # File output/tsv/sra_accession-sra_experiment.tsv has no timestamp file -# File output/tsv/sra_accession-sra_experiment.tsv is created 6.755121968998241 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_experiment.tsv is created 7.138542033826493 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_experiment/config.yaml => output/tsv/sra_accession-sra_experiment.tsv -< 2024-11-23T00:08:26 sra_accession-sra_experiment +< 2024-11-30T03:34:49 sra_accession-sra_experiment togoid-config config/sra_accession-sra_experiment update # Success: output/tsv/sra_accession-sra_experiment.tsv is updated -> 2024-11-23T00:15:19 sra_accession-sra_experiment +> 2024-11-30T03:41:48 sra_accession-sra_experiment Rule for TSV (output/tsv/sra_accession-sra_experiment.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_experiment.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 00:15:19 +0900 +timestamp: 2024-11-30 03:41:48 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 00:15:19 +0900) -latest-prerequisite time: 2024-11-23 00:15:19 +0900 +--prepare:sra (2024-11-30 03:41:48 +0900) +latest-prerequisite time: 2024-11-30 03:41:48 +0900 ................................ ### Update TSV for sra_accession-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_project.tsv is newer than config/sra_accession-sra_project/config.yaml # File output/tsv/sra_accession-sra_project.tsv has no timestamp file -# File output/tsv/sra_accession-sra_project.tsv is created 6.7591098430072805 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_project.tsv is created 7.142586827129561 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_project/config.yaml => output/tsv/sra_accession-sra_project.tsv -< 2024-11-23T00:15:19 sra_accession-sra_project +< 2024-11-30T03:41:48 sra_accession-sra_project togoid-config config/sra_accession-sra_project update # Success: output/tsv/sra_accession-sra_project.tsv is updated -> 2024-11-23T00:16:28 sra_accession-sra_project +> 2024-11-30T03:42:59 sra_accession-sra_project Rule for TSV (output/tsv/sra_accession-sra_project.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 00:16:28 +0900 +timestamp: 2024-11-30 03:42:59 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 00:16:28 +0900) -latest-prerequisite time: 2024-11-23 00:16:28 +0900 +--prepare:sra (2024-11-30 03:42:59 +0900) +latest-prerequisite time: 2024-11-30 03:42:59 +0900 ................................ ### Update TSV for sra_accession-sra_run if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_run.tsv is newer than config/sra_accession-sra_run/config.yaml # File output/tsv/sra_accession-sra_run.tsv has no timestamp file -# File output/tsv/sra_accession-sra_run.tsv is created 6.754433068900394 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_run.tsv is created 7.137922713030868 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_run/config.yaml => output/tsv/sra_accession-sra_run.tsv -< 2024-11-23T00:16:28 sra_accession-sra_run +< 2024-11-30T03:42:59 sra_accession-sra_run togoid-config config/sra_accession-sra_run update # Success: output/tsv/sra_accession-sra_run.tsv is updated -> 2024-11-23T00:24:23 sra_accession-sra_run +> 2024-11-30T03:50:55 sra_accession-sra_run Rule for TSV (output/tsv/sra_accession-sra_run.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_run.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 00:24:23 +0900 +timestamp: 2024-11-30 03:50:55 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 00:24:23 +0900) -latest-prerequisite time: 2024-11-23 00:24:23 +0900 +--prepare:sra (2024-11-30 03:50:55 +0900) +latest-prerequisite time: 2024-11-30 03:50:55 +0900 ................................ ### Update TSV for sra_accession-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_sample.tsv is newer than config/sra_accession-sra_sample/config.yaml # File output/tsv/sra_accession-sra_sample.tsv has no timestamp file -# File output/tsv/sra_accession-sra_sample.tsv is created 6.75523642176765 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_sample.tsv is created 7.138652597474514 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_sample/config.yaml => output/tsv/sra_accession-sra_sample.tsv -< 2024-11-23T00:24:23 sra_accession-sra_sample +< 2024-11-30T03:50:55 sra_accession-sra_sample togoid-config config/sra_accession-sra_sample update # Success: output/tsv/sra_accession-sra_sample.tsv is updated -> 2024-11-23T00:31:15 sra_accession-sra_sample +> 2024-11-30T03:57:37 sra_accession-sra_sample Rule for TSV (output/tsv/sra_accession-sra_sample.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 00:31:15 +0900 +timestamp: 2024-11-30 03:57:37 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 00:31:15 +0900) -latest-prerequisite time: 2024-11-23 00:31:15 +0900 +--prepare:sra (2024-11-30 03:57:37 +0900) +latest-prerequisite time: 2024-11-30 03:57:37 +0900 ................................ ### Update TSV for sra_experiment-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-bioproject.tsv is newer than config/sra_experiment-bioproject/config.yaml # File output/tsv/sra_experiment-bioproject.tsv has no timestamp file -# File output/tsv/sra_experiment-bioproject.tsv is created 6.757442858602338 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-bioproject.tsv is created 7.140489808686378 days ago (will be updated when >5 days) ## Update config/sra_experiment-bioproject/config.yaml => output/tsv/sra_experiment-bioproject.tsv -< 2024-11-23T00:31:15 sra_experiment-bioproject +< 2024-11-30T03:57:37 sra_experiment-bioproject togoid-config config/sra_experiment-bioproject update # Success: output/tsv/sra_experiment-bioproject.tsv is updated -> 2024-11-23T00:35:19 sra_experiment-bioproject +> 2024-11-30T04:01:17 sra_experiment-bioproject Rule for TSV (output/tsv/sra_experiment-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_experiment-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 00:35:19 +0900 +timestamp: 2024-11-30 04:01:17 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 00:35:19 +0900) -latest-prerequisite time: 2024-11-23 00:35:19 +0900 +--prepare:sra (2024-11-30 04:01:17 +0900) +latest-prerequisite time: 2024-11-30 04:01:17 +0900 ................................ ### Update TSV for sra_experiment-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-biosample.tsv is newer than config/sra_experiment-biosample/config.yaml # File output/tsv/sra_experiment-biosample.tsv has no timestamp file -# File output/tsv/sra_experiment-biosample.tsv is created 6.757794681068102 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-biosample.tsv is created 7.140494458318577 days ago (will be updated when >5 days) ## Update config/sra_experiment-biosample/config.yaml => output/tsv/sra_experiment-biosample.tsv -< 2024-11-23T00:35:19 sra_experiment-biosample +< 2024-11-30T04:01:17 sra_experiment-biosample togoid-config config/sra_experiment-biosample update # Success: output/tsv/sra_experiment-biosample.tsv is updated -> 2024-11-23T00:38:59 sra_experiment-biosample +> 2024-11-30T04:04:50 sra_experiment-biosample Rule for TSV (output/tsv/sra_experiment-biosample.tsv) ------------------------------ Investigating output/tsv/sra_experiment-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 00:38:59 +0900 +timestamp: 2024-11-30 04:04:50 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 00:38:59 +0900) -latest-prerequisite time: 2024-11-23 00:38:59 +0900 +--prepare:sra (2024-11-30 04:04:50 +0900) +latest-prerequisite time: 2024-11-30 04:04:50 +0900 ................................ ### Update TSV for sra_experiment-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-sra_project.tsv is newer than config/sra_experiment-sra_project/config.yaml # File output/tsv/sra_experiment-sra_project.tsv has no timestamp file -# File output/tsv/sra_experiment-sra_project.tsv is created 6.758240286099005 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-sra_project.tsv is created 7.140819984333622 days ago (will be updated when >5 days) ## Update config/sra_experiment-sra_project/config.yaml => output/tsv/sra_experiment-sra_project.tsv -< 2024-11-23T00:38:59 sra_experiment-sra_project +< 2024-11-30T04:04:50 sra_experiment-sra_project togoid-config config/sra_experiment-sra_project update # Success: output/tsv/sra_experiment-sra_project.tsv is updated -> 2024-11-23T00:42:04 sra_experiment-sra_project +> 2024-11-30T04:07:54 sra_experiment-sra_project Rule for TSV (output/tsv/sra_experiment-sra_project.tsv) ------------------------------ Investigating output/tsv/sra_experiment-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 00:42:04 +0900 +timestamp: 2024-11-30 04:07:54 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 00:42:04 +0900) -latest-prerequisite time: 2024-11-23 00:42:04 +0900 +--prepare:sra (2024-11-30 04:07:54 +0900) +latest-prerequisite time: 2024-11-30 04:07:54 +0900 ................................ ### Update TSV for sra_experiment-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-sra_sample.tsv is newer than config/sra_experiment-sra_sample/config.yaml # File output/tsv/sra_experiment-sra_sample.tsv has no timestamp file -# File output/tsv/sra_experiment-sra_sample.tsv is created 6.758335076306389 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-sra_sample.tsv is created 7.140544299348252 days ago (will be updated when >5 days) ## Update config/sra_experiment-sra_sample/config.yaml => output/tsv/sra_experiment-sra_sample.tsv -< 2024-11-23T00:42:04 sra_experiment-sra_sample +< 2024-11-30T04:07:54 sra_experiment-sra_sample togoid-config config/sra_experiment-sra_sample update # Success: output/tsv/sra_experiment-sra_sample.tsv is updated -> 2024-11-23T00:45:31 sra_experiment-sra_sample +> 2024-11-30T04:10:52 sra_experiment-sra_sample Rule for TSV (output/tsv/sra_experiment-sra_sample.tsv) ------------------------------ Investigating output/tsv/sra_experiment-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 00:45:31 +0900 +timestamp: 2024-11-30 04:10:52 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 00:45:31 +0900) -latest-prerequisite time: 2024-11-23 00:45:31 +0900 +--prepare:sra (2024-11-30 04:10:52 +0900) +latest-prerequisite time: 2024-11-30 04:10:52 +0900 ................................ ### Update TSV for sra_project-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_project-bioproject.tsv is newer than config/sra_project-bioproject/config.yaml # File output/tsv/sra_project-bioproject.tsv has no timestamp file -# File output/tsv/sra_project-bioproject.tsv is created 6.7599430231136335 days ago (will be updated when >5 days) +# File output/tsv/sra_project-bioproject.tsv is created 7.141778330795348 days ago (will be updated when >5 days) ## Update config/sra_project-bioproject/config.yaml => output/tsv/sra_project-bioproject.tsv -< 2024-11-23T00:45:31 sra_project-bioproject +< 2024-11-30T04:10:52 sra_project-bioproject togoid-config config/sra_project-bioproject update # Success: output/tsv/sra_project-bioproject.tsv is updated -> 2024-11-23T00:46:43 sra_project-bioproject +> 2024-11-30T04:12:02 sra_project-bioproject Rule for TSV (output/tsv/sra_project-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_project-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 00:46:43 +0900 +timestamp: 2024-11-30 04:12:02 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 00:46:43 +0900) -latest-prerequisite time: 2024-11-23 00:46:43 +0900 +--prepare:sra (2024-11-30 04:12:02 +0900) +latest-prerequisite time: 2024-11-30 04:12:02 +0900 ................................ ### Update TSV for sra_run-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-bioproject.tsv is newer than config/sra_run-bioproject/config.yaml # File output/tsv/sra_run-bioproject.tsv has no timestamp file -# File output/tsv/sra_run-bioproject.tsv is created 6.757947609258438 days ago (will be updated when >5 days) +# File output/tsv/sra_run-bioproject.tsv is created 7.1396173127336455 days ago (will be updated when >5 days) ## Update config/sra_run-bioproject/config.yaml => output/tsv/sra_run-bioproject.tsv -< 2024-11-23T00:46:43 sra_run-bioproject +< 2024-11-30T04:12:02 sra_run-bioproject togoid-config config/sra_run-bioproject update # Success: output/tsv/sra_run-bioproject.tsv is updated -> 2024-11-23T00:50:59 sra_run-bioproject +> 2024-11-30T04:16:09 sra_run-bioproject Rule for TSV (output/tsv/sra_run-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_run-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 00:50:59 +0900 +timestamp: 2024-11-30 04:16:09 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 00:50:59 +0900) -latest-prerequisite time: 2024-11-23 00:50:59 +0900 +--prepare:sra (2024-11-30 04:16:09 +0900) +latest-prerequisite time: 2024-11-30 04:16:09 +0900 ................................ ### Update TSV for sra_run-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-biosample.tsv is newer than config/sra_run-biosample/config.yaml # File output/tsv/sra_run-biosample.tsv has no timestamp file -# File output/tsv/sra_run-biosample.tsv is created 6.75815612857103 days ago (will be updated when >5 days) +# File output/tsv/sra_run-biosample.tsv is created 7.139531074433507 days ago (will be updated when >5 days) ## Update config/sra_run-biosample/config.yaml => output/tsv/sra_run-biosample.tsv -< 2024-11-23T00:50:59 sra_run-biosample +< 2024-11-30T04:16:09 sra_run-biosample togoid-config config/sra_run-biosample update # Success: output/tsv/sra_run-biosample.tsv is updated -> 2024-11-23T00:55:14 sra_run-biosample +> 2024-11-30T04:20:09 sra_run-biosample Rule for TSV (output/tsv/sra_run-biosample.tsv) ------------------------------ Investigating output/tsv/sra_run-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 00:55:14 +0900 +timestamp: 2024-11-30 04:20:09 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 00:55:14 +0900) -latest-prerequisite time: 2024-11-23 00:55:14 +0900 +--prepare:sra (2024-11-30 04:20:09 +0900) +latest-prerequisite time: 2024-11-30 04:20:09 +0900 ................................ ### Update TSV for sra_run-sra_experiment if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_experiment.tsv is newer than config/sra_run-sra_experiment/config.yaml # File output/tsv/sra_run-sra_experiment.tsv has no timestamp file -# File output/tsv/sra_run-sra_experiment.tsv is created 6.758945626900069 days ago (will be updated when >5 days) +# File output/tsv/sra_run-sra_experiment.tsv is created 7.1400246237939236 days ago (will be updated when >5 days) ## Update config/sra_run-sra_experiment/config.yaml => output/tsv/sra_run-sra_experiment.tsv -< 2024-11-23T00:55:14 sra_run-sra_experiment +< 2024-11-30T04:20:09 sra_run-sra_experiment togoid-config config/sra_run-sra_experiment update # Success: output/tsv/sra_run-sra_experiment.tsv is updated -> 2024-11-23T00:58:31 sra_run-sra_experiment +> 2024-11-30T04:23:16 sra_run-sra_experiment Rule for TSV (output/tsv/sra_run-sra_experiment.tsv) ------------------------------ Investigating output/tsv/sra_run-sra_experiment.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 00:58:31 +0900 +timestamp: 2024-11-30 04:23:16 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 00:58:31 +0900) -latest-prerequisite time: 2024-11-23 00:58:31 +0900 +--prepare:sra (2024-11-30 04:23:16 +0900) +latest-prerequisite time: 2024-11-30 04:23:16 +0900 ................................ ### Update TSV for sra_run-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_project.tsv is newer than config/sra_run-sra_project/config.yaml # File output/tsv/sra_run-sra_project.tsv has no timestamp file -# File output/tsv/sra_run-sra_project.tsv is created 6.75894658737272 days ago (will be updated when >5 days) +# File output/tsv/sra_run-sra_project.tsv is created 7.139634972735671 days ago (will be updated when >5 days) ## Update config/sra_run-sra_project/config.yaml => output/tsv/sra_run-sra_project.tsv -< 2024-11-23T00:58:31 sra_run-sra_project +< 2024-11-30T04:23:16 sra_run-sra_project togoid-config config/sra_run-sra_project update # Success: output/tsv/sra_run-sra_project.tsv is updated -> 2024-11-23T01:02:14 sra_run-sra_project +> 2024-11-30T04:26:39 sra_run-sra_project Rule for TSV (output/tsv/sra_run-sra_project.tsv) ------------------------------ Investigating output/tsv/sra_run-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:02:11 +0900 +timestamp: 2024-11-30 04:26:39 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 01:02:14 +0900) -latest-prerequisite time: 2024-11-23 01:02:14 +0900 +--prepare:sra (2024-11-30 04:26:39 +0900) +latest-prerequisite time: 2024-11-30 04:26:39 +0900 ................................ ### Update TSV for sra_run-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_sample.tsv is newer than config/sra_run-sra_sample/config.yaml # File output/tsv/sra_run-sra_sample.tsv has no timestamp file -# File output/tsv/sra_run-sra_sample.tsv is created 6.759288383960603 days ago (will be updated when >5 days) +# File output/tsv/sra_run-sra_sample.tsv is created 7.139612138693877 days ago (will be updated when >5 days) ## Update config/sra_run-sra_sample/config.yaml => output/tsv/sra_run-sra_sample.tsv -< 2024-11-23T01:02:14 sra_run-sra_sample +< 2024-11-30T04:26:39 sra_run-sra_sample togoid-config config/sra_run-sra_sample update # Success: output/tsv/sra_run-sra_sample.tsv is updated -> 2024-11-23T01:05:37 sra_run-sra_sample +> 2024-11-30T04:29:54 sra_run-sra_sample Rule for TSV (output/tsv/sra_run-sra_sample.tsv) ------------------------------ Investigating output/tsv/sra_run-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:05:36 +0900 +timestamp: 2024-11-30 04:29:54 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 01:05:37 +0900) -latest-prerequisite time: 2024-11-23 01:05:37 +0900 +--prepare:sra (2024-11-30 04:29:54 +0900) +latest-prerequisite time: 2024-11-30 04:29:54 +0900 ................................ ### Update TSV for sra_sample-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_sample-biosample.tsv is newer than config/sra_sample-biosample/config.yaml # File output/tsv/sra_sample-biosample.tsv has no timestamp file -# File output/tsv/sra_sample-biosample.tsv is created 6.759400822964143 days ago (will be updated when >5 days) +# File output/tsv/sra_sample-biosample.tsv is created 7.1394188743413665 days ago (will be updated when >5 days) ## Update config/sra_sample-biosample/config.yaml => output/tsv/sra_sample-biosample.tsv -< 2024-11-23T01:05:37 sra_sample-biosample +< 2024-11-30T04:29:54 sra_sample-biosample togoid-config config/sra_sample-biosample update # Success: output/tsv/sra_sample-biosample.tsv is updated -> 2024-11-23T01:09:08 sra_sample-biosample +> 2024-11-30T04:33:06 sra_sample-biosample Rule for TSV (output/tsv/sra_sample-biosample.tsv) ------------------------------ Investigating output/tsv/sra_sample-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:09:08 +0900 +timestamp: 2024-11-30 04:33:06 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-11-23 01:09:08 +0900) -latest-prerequisite time: 2024-11-23 01:09:08 +0900 +--prepare:sra (2024-11-30 04:33:06 +0900) +latest-prerequisite time: 2024-11-30 04:33:06 +0900 ................................ ### Update TSV for swisslipids-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-chebi.tsv is newer than config/swisslipids-chebi/config.yaml # File output/tsv/swisslipids-chebi.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-chebi/config.yaml => output/tsv/swisslipids-chebi.tsv -< 2024-11-23T01:09:08 swisslipids-chebi +< 2024-11-30T04:33:06 swisslipids-chebi togoid-config config/swisslipids-chebi update # Success: output/tsv/swisslipids-chebi.tsv is updated -> 2024-11-23T01:10:44 swisslipids-chebi +> 2024-11-30T04:33:21 swisslipids-chebi Rule for TSV (output/tsv/swisslipids-chebi.tsv) ------------------------------ Investigating output/tsv/swisslipids-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:10:44 +0900 +timestamp: 2024-11-30 04:33:20 +0900 pre-requisites: --output/tsv/ () ---prepare:swisslipids (2024-11-23 01:10:44 +0900) -latest-prerequisite time: 2024-11-23 01:10:44 +0900 +--prepare:swisslipids (2024-11-30 04:33:21 +0900) +latest-prerequisite time: 2024-11-30 04:33:21 +0900 ................................ ### Update TSV for swisslipids-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-hmdb.tsv is newer than config/swisslipids-hmdb/config.yaml # File output/tsv/swisslipids-hmdb.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-hmdb/config.yaml => output/tsv/swisslipids-hmdb.tsv -< 2024-11-23T01:10:44 swisslipids-hmdb +< 2024-11-30T04:33:21 swisslipids-hmdb togoid-config config/swisslipids-hmdb update # Success: output/tsv/swisslipids-hmdb.tsv is updated -> 2024-11-23T01:10:57 swisslipids-hmdb +> 2024-11-30T04:33:34 swisslipids-hmdb Rule for TSV (output/tsv/swisslipids-hmdb.tsv) ------------------------------ Investigating output/tsv/swisslipids-hmdb.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:10:57 +0900 +timestamp: 2024-11-30 04:33:34 +0900 pre-requisites: --output/tsv/ () ---prepare:swisslipids (2024-11-23 01:10:57 +0900) -latest-prerequisite time: 2024-11-23 01:10:57 +0900 +--prepare:swisslipids (2024-11-30 04:33:34 +0900) +latest-prerequisite time: 2024-11-30 04:33:34 +0900 ................................ ### Update TSV for swisslipids-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-inchi_key.tsv is newer than config/swisslipids-inchi_key/config.yaml # File output/tsv/swisslipids-inchi_key.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-inchi_key/config.yaml => output/tsv/swisslipids-inchi_key.tsv -< 2024-11-23T01:10:57 swisslipids-inchi_key +< 2024-11-30T04:33:34 swisslipids-inchi_key togoid-config config/swisslipids-inchi_key update # Success: output/tsv/swisslipids-inchi_key.tsv is updated -> 2024-11-23T01:11:09 swisslipids-inchi_key +> 2024-11-30T04:33:46 swisslipids-inchi_key Rule for TSV (output/tsv/swisslipids-inchi_key.tsv) ------------------------------ Investigating output/tsv/swisslipids-inchi_key.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:11:09 +0900 +timestamp: 2024-11-30 04:33:46 +0900 pre-requisites: --output/tsv/ () ---prepare:swisslipids (2024-11-23 01:11:09 +0900) -latest-prerequisite time: 2024-11-23 01:11:09 +0900 +--prepare:swisslipids (2024-11-30 04:33:46 +0900) +latest-prerequisite time: 2024-11-30 04:33:46 +0900 ................................ ### Update TSV for taxonomy-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/taxonomy-pubmed.tsv is newer than config/taxonomy-pubmed/config.yaml # File output/tsv/taxonomy-pubmed.tsv is older than input/taxonomy/download.lock ## Update config/taxonomy-pubmed/config.yaml => output/tsv/taxonomy-pubmed.tsv -< 2024-11-23T01:11:10 taxonomy-pubmed +< 2024-11-30T04:33:46 taxonomy-pubmed togoid-config config/taxonomy-pubmed update awk: cmd. line:1: warning: escape sequence `\|' treated as plain `|' # Success: output/tsv/taxonomy-pubmed.tsv is updated -> 2024-11-23T01:11:10 taxonomy-pubmed +> 2024-11-30T04:33:47 taxonomy-pubmed Rule for TSV (output/tsv/taxonomy-pubmed.tsv) ------------------------------ Investigating output/tsv/taxonomy-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:11:10 +0900 +timestamp: 2024-11-30 04:33:47 +0900 pre-requisites: --output/tsv/ () ---prepare:taxonomy (2024-11-23 01:11:10 +0900) -latest-prerequisite time: 2024-11-23 01:11:10 +0900 +--prepare:taxonomy (2024-11-30 04:33:47 +0900) +latest-prerequisite time: 2024-11-30 04:33:47 +0900 ................................ ### Update TSV for togovar-clinvar if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-clinvar.tsv is newer than config/togovar-clinvar/config.yaml # File output/tsv/togovar-clinvar.tsv has no timestamp file -# File output/tsv/togovar-clinvar.tsv is created 6.762252385018149 days ago (will be updated when >5 days) +# File output/tsv/togovar-clinvar.tsv is created 7.140077492463612 days ago (will be updated when >5 days) ## Update config/togovar-clinvar/config.yaml => output/tsv/togovar-clinvar.tsv -< 2024-11-23T01:11:10 togovar-clinvar +< 2024-11-30T04:33:47 togovar-clinvar togoid-config config/togovar-clinvar update # Success: output/tsv/togovar-clinvar.tsv is updated -> 2024-11-23T01:12:04 togovar-clinvar +> 2024-11-30T04:34:45 togovar-clinvar Rule for TSV (output/tsv/togovar-clinvar.tsv) ------------------------------ Investigating output/tsv/togovar-clinvar.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-23 01:12:04 +0900 +timestamp: 2024-11-30 04:34:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for togovar-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-dbsnp.tsv is newer than config/togovar-dbsnp/config.yaml # File output/tsv/togovar-dbsnp.tsv has no timestamp file -# File output/tsv/togovar-dbsnp.tsv is created 6.762455336945058 days ago (will be updated when >5 days) +# File output/tsv/togovar-dbsnp.tsv is created 7.140317002337859 days ago (will be updated when >5 days) ## Update config/togovar-dbsnp/config.yaml => output/tsv/togovar-dbsnp.tsv -< 2024-11-23T01:12:04 togovar-dbsnp +< 2024-11-30T04:34:45 togovar-dbsnp togoid-config config/togovar-dbsnp update # Success: output/tsv/togovar-dbsnp.tsv is updated -> 2024-11-23T01:12:41 togovar-dbsnp +> 2024-11-30T04:35:18 togovar-dbsnp Rule for TSV (output/tsv/togovar-dbsnp.tsv) ------------------------------ Investigating output/tsv/togovar-dbsnp.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-23 01:12:41 +0900 +timestamp: 2024-11-30 04:35:18 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for togovar-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ensembl_gene.tsv is newer than config/togovar-ensembl_gene/config.yaml # File output/tsv/togovar-ensembl_gene.tsv has no timestamp file -# File output/tsv/togovar-ensembl_gene.tsv is created 6.762441388145035 days ago (will be updated when >5 days) +# File output/tsv/togovar-ensembl_gene.tsv is created 7.140242205323068 days ago (will be updated when >5 days) ## Update config/togovar-ensembl_gene/config.yaml => output/tsv/togovar-ensembl_gene.tsv -< 2024-11-23T01:12:41 togovar-ensembl_gene +< 2024-11-30T04:35:18 togovar-ensembl_gene togoid-config config/togovar-ensembl_gene update # Success: output/tsv/togovar-ensembl_gene.tsv is updated -> 2024-11-23T01:13:21 togovar-ensembl_gene +> 2024-11-30T04:35:58 togovar-ensembl_gene Rule for TSV (output/tsv/togovar-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/togovar-ensembl_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-23 01:13:21 +0900 +timestamp: 2024-11-30 04:35:58 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for togovar-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ensembl_transcript.tsv is newer than config/togovar-ensembl_transcript/config.yaml # File output/tsv/togovar-ensembl_transcript.tsv has no timestamp file -# File output/tsv/togovar-ensembl_transcript.tsv is created 6.7611798191747345 days ago (will be updated when >5 days) +# File output/tsv/togovar-ensembl_transcript.tsv is created 7.138845389485591 days ago (will be updated when >5 days) ## Update config/togovar-ensembl_transcript/config.yaml => output/tsv/togovar-ensembl_transcript.tsv -< 2024-11-23T01:13:21 togovar-ensembl_transcript +< 2024-11-30T04:35:58 togovar-ensembl_transcript togoid-config config/togovar-ensembl_transcript update # Success: output/tsv/togovar-ensembl_transcript.tsv is updated -> 2024-11-23T01:16:01 togovar-ensembl_transcript +> 2024-11-30T04:38:23 togovar-ensembl_transcript Rule for TSV (output/tsv/togovar-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/togovar-ensembl_transcript.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-23 01:16:01 +0900 +timestamp: 2024-11-30 04:38:23 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for togovar-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-hgnc.tsv is newer than config/togovar-hgnc/config.yaml # File output/tsv/togovar-hgnc.tsv has no timestamp file -# File output/tsv/togovar-hgnc.tsv is created 6.762759874190729 days ago (will be updated when >5 days) +# File output/tsv/togovar-hgnc.tsv is created 7.140247814113784 days ago (will be updated when >5 days) ## Update config/togovar-hgnc/config.yaml => output/tsv/togovar-hgnc.tsv -< 2024-11-23T01:16:01 togovar-hgnc +< 2024-11-30T04:38:23 togovar-hgnc togoid-config config/togovar-hgnc update # Success: output/tsv/togovar-hgnc.tsv is updated -> 2024-11-23T01:16:25 togovar-hgnc +> 2024-11-30T04:38:49 togovar-hgnc Rule for TSV (output/tsv/togovar-hgnc.tsv) ------------------------------ Investigating output/tsv/togovar-hgnc.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-23 01:16:25 +0900 +timestamp: 2024-11-30 04:38:49 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for togovar-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ncbigene.tsv is newer than config/togovar-ncbigene/config.yaml # File output/tsv/togovar-ncbigene.tsv has no timestamp file -# File output/tsv/togovar-ncbigene.tsv is created 6.762769467598287 days ago (will be updated when >5 days) +# File output/tsv/togovar-ncbigene.tsv is created 7.1402533348607635 days ago (will be updated when >5 days) ## Update config/togovar-ncbigene/config.yaml => output/tsv/togovar-ncbigene.tsv -< 2024-11-23T01:16:25 togovar-ncbigene +< 2024-11-30T04:38:49 togovar-ncbigene togoid-config config/togovar-ncbigene update # Success: output/tsv/togovar-ncbigene.tsv is updated -> 2024-11-23T01:16:51 togovar-ncbigene +> 2024-11-30T04:39:12 togovar-ncbigene Rule for TSV (output/tsv/togovar-ncbigene.tsv) ------------------------------ Investigating output/tsv/togovar-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-23 01:16:51 +0900 +timestamp: 2024-11-30 04:39:12 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for togovar-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-pubmed.tsv is newer than config/togovar-pubmed/config.yaml # File output/tsv/togovar-pubmed.tsv has no timestamp file -# File output/tsv/togovar-pubmed.tsv is created 6.763056750092337 days ago (will be updated when >5 days) +# File output/tsv/togovar-pubmed.tsv is created 7.140507290997257 days ago (will be updated when >5 days) ## Update config/togovar-pubmed/config.yaml => output/tsv/togovar-pubmed.tsv -< 2024-11-23T01:16:51 togovar-pubmed +< 2024-11-30T04:39:12 togovar-pubmed togoid-config config/togovar-pubmed update # Success: output/tsv/togovar-pubmed.tsv is updated -> 2024-11-23T01:16:52 togovar-pubmed +> 2024-11-30T04:39:13 togovar-pubmed Rule for TSV (output/tsv/togovar-pubmed.tsv) ------------------------------ Investigating output/tsv/togovar-pubmed.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-23 01:16:52 +0900 +timestamp: 2024-11-30 04:39:13 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for togovar-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-refseq_rna.tsv is newer than config/togovar-refseq_rna/config.yaml # File output/tsv/togovar-refseq_rna.tsv has no timestamp file -# File output/tsv/togovar-refseq_rna.tsv is created 6.762093706442928 days ago (will be updated when >5 days) +# File output/tsv/togovar-refseq_rna.tsv is created 7.139548611887685 days ago (will be updated when >5 days) ## Update config/togovar-refseq_rna/config.yaml => output/tsv/togovar-refseq_rna.tsv -< 2024-11-23T01:16:52 togovar-refseq_rna +< 2024-11-30T04:39:13 togovar-refseq_rna togoid-config config/togovar-refseq_rna update # Success: output/tsv/togovar-refseq_rna.tsv is updated -> 2024-11-23T01:18:16 togovar-refseq_rna +> 2024-11-30T04:40:36 togovar-refseq_rna Rule for TSV (output/tsv/togovar-refseq_rna.tsv) ------------------------------ Investigating output/tsv/togovar-refseq_rna.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-23 01:18:16 +0900 +timestamp: 2024-11-30 04:40:36 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for uberon-ncit_tissue if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uberon-ncit_tissue.tsv is newer than config/uberon-ncit_tissue/config.yaml # File output/tsv/uberon-ncit_tissue.tsv has no timestamp file -# File output/tsv/uberon-ncit_tissue.tsv is created 6.763040415831285 days ago (will be updated when >5 days) +# File output/tsv/uberon-ncit_tissue.tsv is created 7.140485273251064 days ago (will be updated when >5 days) ## Update config/uberon-ncit_tissue/config.yaml => output/tsv/uberon-ncit_tissue.tsv -< 2024-11-23T01:18:16 uberon-ncit_tissue +< 2024-11-30T04:40:36 uberon-ncit_tissue togoid-config config/uberon-ncit_tissue update # Success: output/tsv/uberon-ncit_tissue.tsv is updated -> 2024-11-23T01:18:18 uberon-ncit_tissue +> 2024-11-30T04:40:38 uberon-ncit_tissue Rule for TSV (output/tsv/uberon-ncit_tissue.tsv) ------------------------------ Investigating output/tsv/uberon-ncit_tissue.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-23 01:18:18 +0900 +timestamp: 2024-11-30 04:40:38 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ -### Update TSV for uniprot-chembl_target if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-chembl_target if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-chembl_target.tsv is newer than config/uniprot-chembl_target/config.yaml -# File output/tsv/uniprot-chembl_target.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-chembl_target.tsv +# File output/tsv/uniprot-chembl_target.tsv is older than input/uniprot/download.lock +## Update config/uniprot-chembl_target/config.yaml => output/tsv/uniprot-chembl_target.tsv +< 2024-11-30T04:40:38 uniprot-chembl_target +togoid-config config/uniprot-chembl_target update +# Success: output/tsv/uniprot-chembl_target.tsv is updated +> 2024-11-30T05:19:45 uniprot-chembl_target Rule for TSV (output/tsv/uniprot-chembl_target.tsv) ------------------------------ Investigating output/tsv/uniprot-chembl_target.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 03:49:45 +0900 +timestamp: 2024-11-30 05:19:45 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 05:19:45 +0900) +latest-prerequisite time: 2024-11-30 05:19:45 +0900 ................................ -### Update TSV for uniprot-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-dbsnp.tsv is newer than config/uniprot-dbsnp/config.yaml -# File output/tsv/uniprot-dbsnp.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-dbsnp.tsv +# File output/tsv/uniprot-dbsnp.tsv is older than input/uniprot/download.lock +## Update config/uniprot-dbsnp/config.yaml => output/tsv/uniprot-dbsnp.tsv +< 2024-11-30T05:19:45 uniprot-dbsnp +togoid-config config/uniprot-dbsnp update +# Success: output/tsv/uniprot-dbsnp.tsv is updated +> 2024-11-30T05:20:10 uniprot-dbsnp Rule for TSV (output/tsv/uniprot-dbsnp.tsv) ------------------------------ Investigating output/tsv/uniprot-dbsnp.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 03:50:14 +0900 +timestamp: 2024-11-30 05:20:10 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 05:20:10 +0900) +latest-prerequisite time: 2024-11-30 05:20:10 +0900 ................................ -### Update TSV for uniprot-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-ec.tsv is newer than config/uniprot-ec/config.yaml -# File output/tsv/uniprot-ec.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-ec.tsv +# File output/tsv/uniprot-ec.tsv is older than input/uniprot/download.lock +## Update config/uniprot-ec/config.yaml => output/tsv/uniprot-ec.tsv +< 2024-11-30T05:20:10 uniprot-ec +togoid-config config/uniprot-ec update +# Success: output/tsv/uniprot-ec.tsv is updated +> 2024-11-30T05:55:03 uniprot-ec Rule for TSV (output/tsv/uniprot-ec.tsv) ------------------------------ Investigating output/tsv/uniprot-ec.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 04:41:06 +0900 +timestamp: 2024-11-30 05:55:03 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 05:55:03 +0900) +latest-prerequisite time: 2024-11-30 05:55:03 +0900 ................................ -### Update TSV for uniprot-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-ensembl_gene.tsv is newer than config/uniprot-ensembl_gene/config.yaml -# File output/tsv/uniprot-ensembl_gene.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-ensembl_gene.tsv +# File output/tsv/uniprot-ensembl_gene.tsv is older than input/uniprot/download.lock +## Update config/uniprot-ensembl_gene/config.yaml => output/tsv/uniprot-ensembl_gene.tsv +< 2024-11-30T05:55:03 uniprot-ensembl_gene +togoid-config config/uniprot-ensembl_gene update +# Success: output/tsv/uniprot-ensembl_gene.tsv is updated +> 2024-11-30T06:42:45 uniprot-ensembl_gene Rule for TSV (output/tsv/uniprot-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/uniprot-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 05:28:14 +0900 +timestamp: 2024-11-30 06:42:45 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 06:42:45 +0900) +latest-prerequisite time: 2024-11-30 06:42:45 +0900 ................................ -### Update TSV for uniprot-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-ensembl_protein.tsv is newer than config/uniprot-ensembl_protein/config.yaml -# File output/tsv/uniprot-ensembl_protein.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-ensembl_protein.tsv +# File output/tsv/uniprot-ensembl_protein.tsv is older than input/uniprot/download.lock +## Update config/uniprot-ensembl_protein/config.yaml => output/tsv/uniprot-ensembl_protein.tsv +< 2024-11-30T06:42:45 uniprot-ensembl_protein +togoid-config config/uniprot-ensembl_protein update +# Success: output/tsv/uniprot-ensembl_protein.tsv is updated +> 2024-11-30T07:29:45 uniprot-ensembl_protein Rule for TSV (output/tsv/uniprot-ensembl_protein.tsv) ------------------------------ Investigating output/tsv/uniprot-ensembl_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 06:14:28 +0900 +timestamp: 2024-11-30 07:29:45 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 07:29:45 +0900) +latest-prerequisite time: 2024-11-30 07:29:45 +0900 ................................ -### Update TSV for uniprot-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-ensembl_transcript.tsv is newer than config/uniprot-ensembl_transcript/config.yaml -# File output/tsv/uniprot-ensembl_transcript.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-ensembl_transcript.tsv +# File output/tsv/uniprot-ensembl_transcript.tsv is older than input/uniprot/download.lock +## Update config/uniprot-ensembl_transcript/config.yaml => output/tsv/uniprot-ensembl_transcript.tsv +< 2024-11-30T07:29:45 uniprot-ensembl_transcript +togoid-config config/uniprot-ensembl_transcript update +# Success: output/tsv/uniprot-ensembl_transcript.tsv is updated +> 2024-11-30T08:16:54 uniprot-ensembl_transcript Rule for TSV (output/tsv/uniprot-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/uniprot-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 07:01:01 +0900 +timestamp: 2024-11-30 08:16:54 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 08:16:54 +0900) +latest-prerequisite time: 2024-11-30 08:16:54 +0900 ................................ -### Update TSV for uniprot-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-go.tsv is newer than config/uniprot-go/config.yaml -# File output/tsv/uniprot-go.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-go.tsv +# File output/tsv/uniprot-go.tsv is older than input/uniprot/download.lock +## Update config/uniprot-go/config.yaml => output/tsv/uniprot-go.tsv +< 2024-11-30T08:16:54 uniprot-go +togoid-config config/uniprot-go update +# Success: output/tsv/uniprot-go.tsv is updated +> 2024-11-30T08:36:07 uniprot-go Rule for TSV (output/tsv/uniprot-go.tsv) ------------------------------ Investigating output/tsv/uniprot-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 07:19:03 +0900 +timestamp: 2024-11-30 08:36:07 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 08:36:07 +0900) +latest-prerequisite time: 2024-11-30 08:36:07 +0900 ................................ -### Update TSV for uniprot-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-hgnc.tsv is newer than config/uniprot-hgnc/config.yaml -# File output/tsv/uniprot-hgnc.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-hgnc.tsv +# File output/tsv/uniprot-hgnc.tsv is older than input/uniprot/download.lock +## Update config/uniprot-hgnc/config.yaml => output/tsv/uniprot-hgnc.tsv +< 2024-11-30T08:36:07 uniprot-hgnc +togoid-config config/uniprot-hgnc update +# Success: output/tsv/uniprot-hgnc.tsv is updated +> 2024-11-30T09:14:30 uniprot-hgnc Rule for TSV (output/tsv/uniprot-hgnc.tsv) ------------------------------ Investigating output/tsv/uniprot-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 07:57:17 +0900 +timestamp: 2024-11-30 09:14:30 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 09:14:30 +0900) +latest-prerequisite time: 2024-11-30 09:14:30 +0900 ................................ -### Update TSV for uniprot-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-insdc.tsv is newer than config/uniprot-insdc/config.yaml -# File output/tsv/uniprot-insdc.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-insdc.tsv +# File output/tsv/uniprot-insdc.tsv is older than input/uniprot/download.lock +## Update config/uniprot-insdc/config.yaml => output/tsv/uniprot-insdc.tsv +< 2024-11-30T09:14:30 uniprot-insdc +togoid-config config/uniprot-insdc update +# Success: output/tsv/uniprot-insdc.tsv is updated +> 2024-11-30T10:00:39 uniprot-insdc Rule for TSV (output/tsv/uniprot-insdc.tsv) ------------------------------ Investigating output/tsv/uniprot-insdc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 08:43:29 +0900 +timestamp: 2024-11-30 10:00:39 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 10:00:39 +0900) +latest-prerequisite time: 2024-11-30 10:00:39 +0900 ................................ -### Update TSV for uniprot-intact if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-intact if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-intact.tsv is newer than config/uniprot-intact/config.yaml -# File output/tsv/uniprot-intact.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-intact.tsv +# File output/tsv/uniprot-intact.tsv is older than input/uniprot/download.lock +## Update config/uniprot-intact/config.yaml => output/tsv/uniprot-intact.tsv +< 2024-11-30T10:00:39 uniprot-intact +togoid-config config/uniprot-intact update +# Success: output/tsv/uniprot-intact.tsv is updated +> 2024-11-30T10:02:02 uniprot-intact Rule for TSV (output/tsv/uniprot-intact.tsv) ------------------------------ Investigating output/tsv/uniprot-intact.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 08:45:13 +0900 +timestamp: 2024-11-30 10:02:02 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 10:02:02 +0900) +latest-prerequisite time: 2024-11-30 10:02:02 +0900 ................................ -### Update TSV for uniprot-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-ncbigene.tsv is newer than config/uniprot-ncbigene/config.yaml -# File output/tsv/uniprot-ncbigene.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-ncbigene.tsv +# File output/tsv/uniprot-ncbigene.tsv is older than input/uniprot/download.lock +## Update config/uniprot-ncbigene/config.yaml => output/tsv/uniprot-ncbigene.tsv +< 2024-11-30T10:02:02 uniprot-ncbigene +togoid-config config/uniprot-ncbigene update +# Success: output/tsv/uniprot-ncbigene.tsv is updated +> 2024-11-30T10:41:09 uniprot-ncbigene Rule for TSV (output/tsv/uniprot-ncbigene.tsv) ------------------------------ Investigating output/tsv/uniprot-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 09:23:48 +0900 +timestamp: 2024-11-30 10:41:09 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 10:41:09 +0900) +latest-prerequisite time: 2024-11-30 10:41:09 +0900 ................................ -### Update TSV for uniprot-oma_group if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-oma_group if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-oma_group.tsv is newer than config/uniprot-oma_group/config.yaml -# File output/tsv/uniprot-oma_group.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-oma_group.tsv +# File output/tsv/uniprot-oma_group.tsv is older than input/uniprot/download.lock +## Update config/uniprot-oma_group/config.yaml => output/tsv/uniprot-oma_group.tsv +< 2024-11-30T10:41:09 uniprot-oma_group +togoid-config config/uniprot-oma_group update +# Success: output/tsv/uniprot-oma_group.tsv is updated +> 2024-11-30T11:20:53 uniprot-oma_group Rule for TSV (output/tsv/uniprot-oma_group.tsv) ------------------------------ Investigating output/tsv/uniprot-oma_group.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 10:02:59 +0900 +timestamp: 2024-11-30 11:20:53 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 11:20:53 +0900) +latest-prerequisite time: 2024-11-30 11:20:53 +0900 ................................ -### Update TSV for uniprot-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-omim_gene.tsv is newer than config/uniprot-omim_gene/config.yaml -# File output/tsv/uniprot-omim_gene.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-omim_gene.tsv +# File output/tsv/uniprot-omim_gene.tsv is older than input/uniprot/download.lock +## Update config/uniprot-omim_gene/config.yaml => output/tsv/uniprot-omim_gene.tsv +< 2024-11-30T11:20:53 uniprot-omim_gene +togoid-config config/uniprot-omim_gene update +# Success: output/tsv/uniprot-omim_gene.tsv is updated +> 2024-11-30T11:21:01 uniprot-omim_gene Rule for TSV (output/tsv/uniprot-omim_gene.tsv) ------------------------------ Investigating output/tsv/uniprot-omim_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 10:03:07 +0900 +timestamp: 2024-11-30 11:21:01 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 11:21:01 +0900) +latest-prerequisite time: 2024-11-30 11:21:01 +0900 ................................ -### Update TSV for uniprot-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-omim_phenotype.tsv is newer than config/uniprot-omim_phenotype/config.yaml -# File output/tsv/uniprot-omim_phenotype.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-omim_phenotype.tsv +# File output/tsv/uniprot-omim_phenotype.tsv is older than input/uniprot/download.lock +## Update config/uniprot-omim_phenotype/config.yaml => output/tsv/uniprot-omim_phenotype.tsv +< 2024-11-30T11:21:01 uniprot-omim_phenotype +togoid-config config/uniprot-omim_phenotype update +# Success: output/tsv/uniprot-omim_phenotype.tsv is updated +> 2024-11-30T11:21:04 uniprot-omim_phenotype Rule for TSV (output/tsv/uniprot-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/uniprot-omim_phenotype.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 10:03:10 +0900 +timestamp: 2024-11-30 11:21:04 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 11:21:04 +0900) +latest-prerequisite time: 2024-11-30 11:21:04 +0900 ................................ -### Update TSV for uniprot-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-orphanet_phenotype.tsv is newer than config/uniprot-orphanet_phenotype/config.yaml -# File output/tsv/uniprot-orphanet_phenotype.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-orphanet_phenotype.tsv +# File output/tsv/uniprot-orphanet_phenotype.tsv is older than input/uniprot/download.lock +## Update config/uniprot-orphanet_phenotype/config.yaml => output/tsv/uniprot-orphanet_phenotype.tsv +< 2024-11-30T11:21:04 uniprot-orphanet_phenotype +togoid-config config/uniprot-orphanet_phenotype update +# Success: output/tsv/uniprot-orphanet_phenotype.tsv is updated +> 2024-11-30T12:07:53 uniprot-orphanet_phenotype Rule for TSV (output/tsv/uniprot-orphanet_phenotype.tsv) ------------------------------ Investigating output/tsv/uniprot-orphanet_phenotype.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 10:49:35 +0900 +timestamp: 2024-11-30 12:07:53 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:19 +0900) -latest-prerequisite time: 2024-11-23 01:18:19 +0900 +--prepare:uniprot (2024-11-30 12:07:53 +0900) +latest-prerequisite time: 2024-11-30 12:07:53 +0900 ................................ -### Update TSV for uniprot-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-pdb.tsv is newer than config/uniprot-pdb/config.yaml -# File output/tsv/uniprot-pdb.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-pdb.tsv +# File output/tsv/uniprot-pdb.tsv is older than input/uniprot/download.lock +## Update config/uniprot-pdb/config.yaml => output/tsv/uniprot-pdb.tsv +< 2024-11-30T12:07:53 uniprot-pdb +togoid-config config/uniprot-pdb update +# Success: output/tsv/uniprot-pdb.tsv is updated +> 2024-11-30T12:47:53 uniprot-pdb Rule for TSV (output/tsv/uniprot-pdb.tsv) ------------------------------ Investigating output/tsv/uniprot-pdb.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 11:28:15 +0900 +timestamp: 2024-11-30 12:47:53 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:20 +0900) -latest-prerequisite time: 2024-11-23 01:18:20 +0900 +--prepare:uniprot (2024-11-30 12:47:53 +0900) +latest-prerequisite time: 2024-11-30 12:47:53 +0900 ................................ -### Update TSV for uniprot-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-reactome_pathway.tsv is newer than config/uniprot-reactome_pathway/config.yaml -# File output/tsv/uniprot-reactome_pathway.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-reactome_pathway.tsv +# File output/tsv/uniprot-reactome_pathway.tsv is older than input/uniprot/download.lock +## Update config/uniprot-reactome_pathway/config.yaml => output/tsv/uniprot-reactome_pathway.tsv +< 2024-11-30T12:47:53 uniprot-reactome_pathway +togoid-config config/uniprot-reactome_pathway update +# Success: output/tsv/uniprot-reactome_pathway.tsv is updated +> 2024-11-30T13:34:50 uniprot-reactome_pathway Rule for TSV (output/tsv/uniprot-reactome_pathway.tsv) ------------------------------ Investigating output/tsv/uniprot-reactome_pathway.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 12:14:19 +0900 +timestamp: 2024-11-30 13:34:50 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:20 +0900) -latest-prerequisite time: 2024-11-23 01:18:20 +0900 +--prepare:uniprot (2024-11-30 13:34:50 +0900) +latest-prerequisite time: 2024-11-30 13:34:50 +0900 ................................ -### Update TSV for uniprot-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-refseq_protein.tsv is newer than config/uniprot-refseq_protein/config.yaml -# File output/tsv/uniprot-refseq_protein.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-refseq_protein.tsv +# File output/tsv/uniprot-refseq_protein.tsv is older than input/uniprot/download.lock +## Update config/uniprot-refseq_protein/config.yaml => output/tsv/uniprot-refseq_protein.tsv +< 2024-11-30T13:34:50 uniprot-refseq_protein +togoid-config config/uniprot-refseq_protein update +# Success: output/tsv/uniprot-refseq_protein.tsv is updated +> 2024-11-30T14:15:09 uniprot-refseq_protein Rule for TSV (output/tsv/uniprot-refseq_protein.tsv) ------------------------------ Investigating output/tsv/uniprot-refseq_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 12:53:40 +0900 +timestamp: 2024-11-30 14:15:09 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:20 +0900) -latest-prerequisite time: 2024-11-23 01:18:20 +0900 +--prepare:uniprot (2024-11-30 14:15:09 +0900) +latest-prerequisite time: 2024-11-30 14:15:09 +0900 ................................ -### Update TSV for uniprot-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-taxonomy.tsv is newer than config/uniprot-taxonomy/config.yaml -# File output/tsv/uniprot-taxonomy.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-taxonomy.tsv +# File output/tsv/uniprot-taxonomy.tsv is older than input/uniprot/download.lock +## Update config/uniprot-taxonomy/config.yaml => output/tsv/uniprot-taxonomy.tsv +< 2024-11-30T14:15:09 uniprot-taxonomy +togoid-config config/uniprot-taxonomy update +# Success: output/tsv/uniprot-taxonomy.tsv is updated +> 2024-11-30T14:50:01 uniprot-taxonomy Rule for TSV (output/tsv/uniprot-taxonomy.tsv) ------------------------------ Investigating output/tsv/uniprot-taxonomy.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 13:26:44 +0900 +timestamp: 2024-11-30 14:50:01 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:20 +0900) -latest-prerequisite time: 2024-11-23 01:18:20 +0900 +--prepare:uniprot (2024-11-30 14:50:01 +0900) +latest-prerequisite time: 2024-11-30 14:50:01 +0900 ................................ -### Update TSV for uniprot-uniprot_mnemonic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-uniprot_mnemonic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-uniprot_mnemonic.tsv is newer than config/uniprot-uniprot_mnemonic/config.yaml -# File output/tsv/uniprot-uniprot_mnemonic.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-uniprot_mnemonic.tsv +# File output/tsv/uniprot-uniprot_mnemonic.tsv is older than input/uniprot/download.lock +## Update config/uniprot-uniprot_mnemonic/config.yaml => output/tsv/uniprot-uniprot_mnemonic.tsv +< 2024-11-30T14:50:01 uniprot-uniprot_mnemonic +togoid-config config/uniprot-uniprot_mnemonic update +# Success: output/tsv/uniprot-uniprot_mnemonic.tsv is updated +> 2024-11-30T15:46:15 uniprot-uniprot_mnemonic Rule for TSV (output/tsv/uniprot-uniprot_mnemonic.tsv) ------------------------------ Investigating output/tsv/uniprot-uniprot_mnemonic.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 14:21:31 +0900 +timestamp: 2024-11-30 15:46:15 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:20 +0900) -latest-prerequisite time: 2024-11-23 01:18:20 +0900 +--prepare:uniprot (2024-11-30 15:46:15 +0900) +latest-prerequisite time: 2024-11-30 15:46:15 +0900 ................................ ### Update TSV for uniprot_reference_proteome-assembly_insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is newer than config/uniprot_reference_proteome-assembly_insdc/config.yaml # File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is created 6.763074740167338 days ago (will be updated when >5 days) +# File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is created 7.602660054394884 days ago (will be updated when >5 days) ## Update config/uniprot_reference_proteome-assembly_insdc/config.yaml => output/tsv/uniprot_reference_proteome-assembly_insdc.tsv -< 2024-11-23T01:18:20 uniprot_reference_proteome-assembly_insdc +< 2024-11-30T15:46:15 uniprot_reference_proteome-assembly_insdc togoid-config config/uniprot_reference_proteome-assembly_insdc update # Success: output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is updated -> 2024-11-23T01:18:25 uniprot_reference_proteome-assembly_insdc +> 2024-11-30T15:46:16 uniprot_reference_proteome-assembly_insdc Rule for TSV (output/tsv/uniprot_reference_proteome-assembly_insdc.tsv) ------------------------------ Investigating output/tsv/uniprot_reference_proteome-assembly_insdc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:18:25 +0900 +timestamp: 2024-11-30 15:46:16 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:25 +0900) -latest-prerequisite time: 2024-11-23 01:18:25 +0900 +--prepare:uniprot (2024-11-30 15:46:16 +0900) +latest-prerequisite time: 2024-11-30 15:46:16 +0900 ................................ ### Update TSV for uniprot_reference_proteome-assembly_refseq if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is newer than config/uniprot_reference_proteome-assembly_refseq/config.yaml # File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is created 6.7631414695522105 days ago (will be updated when >5 days) +# File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is created 7.602651389940602 days ago (will be updated when >5 days) ## Update config/uniprot_reference_proteome-assembly_refseq/config.yaml => output/tsv/uniprot_reference_proteome-assembly_refseq.tsv -< 2024-11-23T01:18:26 uniprot_reference_proteome-assembly_refseq +< 2024-11-30T15:46:16 uniprot_reference_proteome-assembly_refseq togoid-config config/uniprot_reference_proteome-assembly_refseq update # Success: output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is updated -> 2024-11-23T01:18:26 uniprot_reference_proteome-assembly_refseq +> 2024-11-30T15:46:16 uniprot_reference_proteome-assembly_refseq Rule for TSV (output/tsv/uniprot_reference_proteome-assembly_refseq.tsv) ------------------------------ Investigating output/tsv/uniprot_reference_proteome-assembly_refseq.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:18:26 +0900 +timestamp: 2024-11-30 15:46:16 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:26 +0900) -latest-prerequisite time: 2024-11-23 01:18:26 +0900 +--prepare:uniprot (2024-11-30 15:46:16 +0900) +latest-prerequisite time: 2024-11-30 15:46:16 +0900 ................................ ### Update TSV for uniprot_reference_proteome-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-taxonomy.tsv is newer than config/uniprot_reference_proteome-taxonomy/config.yaml # File output/tsv/uniprot_reference_proteome-taxonomy.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-taxonomy.tsv is created 6.7631402672078815 days ago (will be updated when >5 days) +# File output/tsv/uniprot_reference_proteome-taxonomy.tsv is created 7.602651475418923 days ago (will be updated when >5 days) ## Update config/uniprot_reference_proteome-taxonomy/config.yaml => output/tsv/uniprot_reference_proteome-taxonomy.tsv -< 2024-11-23T01:18:26 uniprot_reference_proteome-taxonomy +< 2024-11-30T15:46:16 uniprot_reference_proteome-taxonomy togoid-config config/uniprot_reference_proteome-taxonomy update # Success: output/tsv/uniprot_reference_proteome-taxonomy.tsv is updated -> 2024-11-23T01:18:27 uniprot_reference_proteome-taxonomy +> 2024-11-30T15:46:17 uniprot_reference_proteome-taxonomy Rule for TSV (output/tsv/uniprot_reference_proteome-taxonomy.tsv) ------------------------------ Investigating output/tsv/uniprot_reference_proteome-taxonomy.tsv class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:18:27 +0900 +timestamp: 2024-11-30 15:46:17 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-11-23 01:18:27 +0900) -latest-prerequisite time: 2024-11-23 01:18:27 +0900 +--prepare:uniprot (2024-11-30 15:46:17 +0900) +latest-prerequisite time: 2024-11-30 15:46:17 +0900 ................................ ### Update TSV for wikipathways-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-chebi.tsv is newer than config/wikipathways-chebi/config.yaml # File output/tsv/wikipathways-chebi.tsv has no timestamp file -# File output/tsv/wikipathways-chebi.tsv is created 6.7630997818285294 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-chebi.tsv is created 7.602575567952719 days ago (will be updated when >5 days) ## Update config/wikipathways-chebi/config.yaml => output/tsv/wikipathways-chebi.tsv -< 2024-11-23T01:18:27 wikipathways-chebi +< 2024-11-30T15:46:17 wikipathways-chebi togoid-config config/wikipathways-chebi update # Success: output/tsv/wikipathways-chebi.tsv is updated -> 2024-11-23T01:18:34 wikipathways-chebi +> 2024-11-30T15:46:21 wikipathways-chebi Rule for TSV (output/tsv/wikipathways-chebi.tsv) ------------------------------ Investigating output/tsv/wikipathways-chebi.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-23 01:18:34 +0900 +timestamp: 2024-11-30 15:46:21 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for wikipathways-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-doid.tsv is newer than config/wikipathways-doid/config.yaml # File output/tsv/wikipathways-doid.tsv has no timestamp file -# File output/tsv/wikipathways-doid.tsv is created 6.763163566861412 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-doid.tsv is created 7.602597233730637 days ago (will be updated when >5 days) ## Update config/wikipathways-doid/config.yaml => output/tsv/wikipathways-doid.tsv -< 2024-11-23T01:18:34 wikipathways-doid +< 2024-11-30T15:46:21 wikipathways-doid togoid-config config/wikipathways-doid update # Success: output/tsv/wikipathways-doid.tsv is updated -> 2024-11-23T01:18:37 wikipathways-doid +> 2024-11-30T15:46:23 wikipathways-doid Rule for TSV (output/tsv/wikipathways-doid.tsv) ------------------------------ Investigating output/tsv/wikipathways-doid.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-23 01:18:37 +0900 +timestamp: 2024-11-30 15:46:23 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for wikipathways-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-hmdb.tsv is newer than config/wikipathways-hmdb/config.yaml # File output/tsv/wikipathways-hmdb.tsv has no timestamp file -# File output/tsv/wikipathways-hmdb.tsv is created 6.763166065291157 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-hmdb.tsv is created 7.602591487318622 days ago (will be updated when >5 days) ## Update config/wikipathways-hmdb/config.yaml => output/tsv/wikipathways-hmdb.tsv -< 2024-11-23T01:18:37 wikipathways-hmdb +< 2024-11-30T15:46:23 wikipathways-hmdb togoid-config config/wikipathways-hmdb update # Success: output/tsv/wikipathways-hmdb.tsv is updated -> 2024-11-23T01:18:39 wikipathways-hmdb +> 2024-11-30T15:46:25 wikipathways-hmdb Rule for TSV (output/tsv/wikipathways-hmdb.tsv) ------------------------------ Investigating output/tsv/wikipathways-hmdb.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-23 01:18:39 +0900 +timestamp: 2024-11-30 15:46:25 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for wikipathways-lipidmaps if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-lipidmaps.tsv is newer than config/wikipathways-lipidmaps/config.yaml # File output/tsv/wikipathways-lipidmaps.tsv has no timestamp file -# File output/tsv/wikipathways-lipidmaps.tsv is created 6.763171537373959 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-lipidmaps.tsv is created 7.60259604819735 days ago (will be updated when >5 days) ## Update config/wikipathways-lipidmaps/config.yaml => output/tsv/wikipathways-lipidmaps.tsv -< 2024-11-23T01:18:39 wikipathways-lipidmaps +< 2024-11-30T15:46:25 wikipathways-lipidmaps togoid-config config/wikipathways-lipidmaps update # Success: output/tsv/wikipathways-lipidmaps.tsv is updated -> 2024-11-23T01:18:41 wikipathways-lipidmaps +> 2024-11-30T15:46:27 wikipathways-lipidmaps Rule for TSV (output/tsv/wikipathways-lipidmaps.tsv) ------------------------------ Investigating output/tsv/wikipathways-lipidmaps.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-23 01:18:41 +0900 +timestamp: 2024-11-30 15:46:27 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for wikipathways-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-ncbigene.tsv is newer than config/wikipathways-ncbigene/config.yaml # File output/tsv/wikipathways-ncbigene.tsv has no timestamp file -# File output/tsv/wikipathways-ncbigene.tsv is created 6.763039489635196 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-ncbigene.tsv is created 7.602423649333589 days ago (will be updated when >5 days) ## Update config/wikipathways-ncbigene/config.yaml => output/tsv/wikipathways-ncbigene.tsv -< 2024-11-23T01:18:41 wikipathways-ncbigene +< 2024-11-30T15:46:27 wikipathways-ncbigene togoid-config config/wikipathways-ncbigene update # Success: output/tsv/wikipathways-ncbigene.tsv is updated -> 2024-11-23T01:18:58 wikipathways-ncbigene +> 2024-11-30T15:46:41 wikipathways-ncbigene Rule for TSV (output/tsv/wikipathways-ncbigene.tsv) ------------------------------ Investigating output/tsv/wikipathways-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-11-23 01:18:58 +0900 +timestamp: 2024-11-30 15:46:41 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TSV for wikipathways-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-uniprot.tsv is newer than config/wikipathways-uniprot/config.yaml # File output/tsv/wikipathways-uniprot.tsv has no timestamp file -# File output/tsv/wikipathways-uniprot.tsv is created 259.06493106209524 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-uniprot.tsv is created 266.6675112173987 days ago (will be updated when >5 days) ## Update config/wikipathways-uniprot/config.yaml => output/tsv/wikipathways-uniprot.tsv -< 2024-11-23T01:18:58 wikipathways-uniprot +< 2024-11-30T15:46:41 wikipathways-uniprot togoid-config config/wikipathways-uniprot update # Error: output/tsv/wikipathways-uniprot.tsv new file size per old 60240 / 470542 = 0.12802257821830995 < 0.5 # Failure: output/tsv/wikipathways-uniprot.tsv is not updated -> 2024-11-23T01:19:03 wikipathways-uniprot +> 2024-11-30T15:46:45 wikipathways-uniprot Rule for TSV (output/tsv/wikipathways-uniprot.tsv) ------------------------------ Investigating output/tsv/wikipathways-uniprot.tsv @@ -5696,70 +5820,70 @@ task needed: true timestamp: 2024-03-08 23:45:28 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-11-22 21:53:47 +0900) -latest-prerequisite time: 2024-11-22 21:53:47 +0900 +--input/update.txt (2024-11-29 21:37:18 +0900) +latest-prerequisite time: 2024-11-29 21:37:18 +0900 ................................ ### Update TTL for affy_probeset-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/affy_probeset-ncbigene.ttl is older than output/tsv/affy_probeset-ncbigene.tsv ## Convert output/tsv/affy_probeset-ncbigene.tsv => output/ttl/affy_probeset-ncbigene.ttl -< 2024-11-23T01:19:04 affy_probeset-ncbigene +< 2024-11-30T15:46:45 affy_probeset-ncbigene togoid-config config/affy_probeset-ncbigene convert -> 2024-11-23T01:19:05 affy_probeset-ncbigene +> 2024-11-30T15:46:45 affy_probeset-ncbigene ### Update TTL for assembly_insdc-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-bioproject.ttl is older than output/tsv/assembly_insdc-bioproject.tsv ## Convert output/tsv/assembly_insdc-bioproject.tsv => output/ttl/assembly_insdc-bioproject.ttl -< 2024-11-23T01:19:05 assembly_insdc-bioproject +< 2024-11-30T15:46:45 assembly_insdc-bioproject togoid-config config/assembly_insdc-bioproject convert -> 2024-11-23T01:19:51 assembly_insdc-bioproject +> 2024-11-30T15:47:04 assembly_insdc-bioproject ### Update TTL for assembly_insdc-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-biosample.ttl is older than output/tsv/assembly_insdc-biosample.tsv ## Convert output/tsv/assembly_insdc-biosample.tsv => output/ttl/assembly_insdc-biosample.ttl -< 2024-11-23T01:19:51 assembly_insdc-biosample +< 2024-11-30T15:47:04 assembly_insdc-biosample togoid-config config/assembly_insdc-biosample convert -> 2024-11-23T01:20:13 assembly_insdc-biosample +> 2024-11-30T15:47:24 assembly_insdc-biosample ### Update TTL for assembly_insdc-insdc_master if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-insdc_master.ttl is older than output/tsv/assembly_insdc-insdc_master.tsv ## Convert output/tsv/assembly_insdc-insdc_master.tsv => output/ttl/assembly_insdc-insdc_master.ttl -< 2024-11-23T01:20:13 assembly_insdc-insdc_master +< 2024-11-30T15:47:24 assembly_insdc-insdc_master togoid-config config/assembly_insdc-insdc_master convert -> 2024-11-23T01:21:01 assembly_insdc-insdc_master +> 2024-11-30T15:47:42 assembly_insdc-insdc_master ### Update TTL for bioproject-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-biosample.ttl is older than output/tsv/bioproject-biosample.tsv ## Convert output/tsv/bioproject-biosample.tsv => output/ttl/bioproject-biosample.ttl -< 2024-11-23T01:21:01 bioproject-biosample +< 2024-11-30T15:47:42 bioproject-biosample togoid-config config/bioproject-biosample convert -> 2024-11-23T01:21:40 bioproject-biosample +> 2024-11-30T15:48:02 bioproject-biosample ### Update TTL for bioproject-geo_series if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-geo_series.ttl is older than output/tsv/bioproject-geo_series.tsv ## Convert output/tsv/bioproject-geo_series.tsv => output/ttl/bioproject-geo_series.ttl -< 2024-11-23T01:21:40 bioproject-geo_series +< 2024-11-30T15:48:02 bioproject-geo_series togoid-config config/bioproject-geo_series convert -> 2024-11-23T01:21:45 bioproject-geo_series +> 2024-11-30T15:48:05 bioproject-geo_series ### Update TTL for bioproject-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-pubmed.ttl is older than output/tsv/bioproject-pubmed.tsv ## Convert output/tsv/bioproject-pubmed.tsv => output/ttl/bioproject-pubmed.ttl -< 2024-11-23T01:21:45 bioproject-pubmed +< 2024-11-30T15:48:05 bioproject-pubmed togoid-config config/bioproject-pubmed convert -> 2024-11-23T01:21:56 bioproject-pubmed +> 2024-11-30T15:48:07 bioproject-pubmed ### Update TTL for bioproject_umbrella-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject_umbrella-bioproject.ttl is older than output/tsv/bioproject_umbrella-bioproject.tsv ## Convert output/tsv/bioproject_umbrella-bioproject.tsv => output/ttl/bioproject_umbrella-bioproject.ttl -< 2024-11-23T01:21:56 bioproject_umbrella-bioproject +< 2024-11-30T15:48:07 bioproject_umbrella-bioproject togoid-config config/bioproject_umbrella-bioproject convert -> 2024-11-23T01:22:00 bioproject_umbrella-bioproject +> 2024-11-30T15:48:08 bioproject_umbrella-bioproject ### Update TTL for biosample-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/biosample-bioproject.ttl is older than output/tsv/biosample-bioproject.tsv ## Convert output/tsv/biosample-bioproject.tsv => output/ttl/biosample-bioproject.ttl -< 2024-11-23T01:22:00 biosample-bioproject +< 2024-11-30T15:48:08 biosample-bioproject togoid-config config/biosample-bioproject convert -> 2024-11-23T01:26:06 biosample-bioproject +> 2024-11-30T15:50:57 biosample-bioproject ### Update TTL for biosample-geo_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/biosample-geo_sample.ttl is older than output/tsv/biosample-geo_sample.tsv ## Convert output/tsv/biosample-geo_sample.tsv => output/ttl/biosample-geo_sample.ttl -< 2024-11-23T01:26:06 biosample-geo_sample +< 2024-11-30T15:50:57 biosample-geo_sample togoid-config config/biosample-geo_sample convert -> 2024-11-23T01:27:22 biosample-geo_sample +> 2024-11-30T15:52:16 biosample-geo_sample ### Update TTL for cellosaurus-ncit_disease if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/cellosaurus-ncit_disease.ttl is newer than output/tsv/cellosaurus-ncit_disease.tsv # => Preserving output/ttl/cellosaurus-ncit_disease.ttl @@ -5769,162 +5893,162 @@ togoid-config config/biosample-geo_sample convert ### Update TTL for chebi-glytoucan if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chebi-glytoucan.ttl is older than output/tsv/chebi-glytoucan.tsv ## Convert output/tsv/chebi-glytoucan.tsv => output/ttl/chebi-glytoucan.ttl -< 2024-11-23T01:27:22 chebi-glytoucan +< 2024-11-30T15:52:16 chebi-glytoucan togoid-config config/chebi-glytoucan convert -> 2024-11-23T01:27:22 chebi-glytoucan +> 2024-11-30T15:52:16 chebi-glytoucan ### Update TTL for chebi-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chebi-inchi_key.ttl is older than output/tsv/chebi-inchi_key.tsv ## Convert output/tsv/chebi-inchi_key.tsv => output/ttl/chebi-inchi_key.ttl -< 2024-11-23T01:27:22 chebi-inchi_key +< 2024-11-30T15:52:16 chebi-inchi_key togoid-config config/chebi-inchi_key convert -> 2024-11-23T01:27:25 chebi-inchi_key +> 2024-11-30T15:52:18 chebi-inchi_key ### Update TTL for chembl_compound-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-chebi.ttl is older than output/tsv/chembl_compound-chebi.tsv ## Convert output/tsv/chembl_compound-chebi.tsv => output/ttl/chembl_compound-chebi.ttl -< 2024-11-23T01:27:25 chembl_compound-chebi +< 2024-11-30T15:52:18 chembl_compound-chebi togoid-config config/chembl_compound-chebi convert -> 2024-11-23T01:27:26 chembl_compound-chebi +> 2024-11-30T15:52:18 chembl_compound-chebi ### Update TTL for chembl_compound-chembl_target if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-chembl_target.ttl is older than output/tsv/chembl_compound-chembl_target.tsv ## Convert output/tsv/chembl_compound-chembl_target.tsv => output/ttl/chembl_compound-chembl_target.ttl -< 2024-11-23T01:27:26 chembl_compound-chembl_target +< 2024-11-30T15:52:18 chembl_compound-chembl_target togoid-config config/chembl_compound-chembl_target convert -> 2024-11-23T01:28:02 chembl_compound-chembl_target +> 2024-11-30T15:52:47 chembl_compound-chembl_target ### Update TTL for chembl_compound-drugbank if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-drugbank.ttl is older than output/tsv/chembl_compound-drugbank.tsv ## Convert output/tsv/chembl_compound-drugbank.tsv => output/ttl/chembl_compound-drugbank.ttl -< 2024-11-23T01:28:02 chembl_compound-drugbank +< 2024-11-30T15:52:47 chembl_compound-drugbank togoid-config config/chembl_compound-drugbank convert -> 2024-11-23T01:28:02 chembl_compound-drugbank +> 2024-11-30T15:52:47 chembl_compound-drugbank ### Update TTL for chembl_compound-hmdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-hmdb.ttl is older than output/tsv/chembl_compound-hmdb.tsv ## Convert output/tsv/chembl_compound-hmdb.tsv => output/ttl/chembl_compound-hmdb.ttl -< 2024-11-23T01:28:02 chembl_compound-hmdb +< 2024-11-30T15:52:47 chembl_compound-hmdb togoid-config config/chembl_compound-hmdb convert -> 2024-11-23T01:28:03 chembl_compound-hmdb +> 2024-11-30T15:52:47 chembl_compound-hmdb ### Update TTL for chembl_compound-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-inchi_key.ttl is older than output/tsv/chembl_compound-inchi_key.tsv ## Convert output/tsv/chembl_compound-inchi_key.tsv => output/ttl/chembl_compound-inchi_key.ttl -< 2024-11-23T01:28:03 chembl_compound-inchi_key +< 2024-11-30T15:52:47 chembl_compound-inchi_key togoid-config config/chembl_compound-inchi_key convert -> 2024-11-23T01:28:22 chembl_compound-inchi_key +> 2024-11-30T15:53:06 chembl_compound-inchi_key ### Update TTL for chembl_compound-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-mesh.ttl is older than output/tsv/chembl_compound-mesh.tsv ## Convert output/tsv/chembl_compound-mesh.tsv => output/ttl/chembl_compound-mesh.ttl -< 2024-11-23T01:28:22 chembl_compound-mesh +< 2024-11-30T15:53:06 chembl_compound-mesh togoid-config config/chembl_compound-mesh convert -> 2024-11-23T01:28:23 chembl_compound-mesh +> 2024-11-30T15:53:06 chembl_compound-mesh ### Update TTL for chembl_compound-pdb_ccd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pdb_ccd.ttl is older than output/tsv/chembl_compound-pdb_ccd.tsv ## Convert output/tsv/chembl_compound-pdb_ccd.tsv => output/ttl/chembl_compound-pdb_ccd.ttl -< 2024-11-23T01:28:23 chembl_compound-pdb_ccd +< 2024-11-30T15:53:06 chembl_compound-pdb_ccd togoid-config config/chembl_compound-pdb_ccd convert -> 2024-11-23T01:28:24 chembl_compound-pdb_ccd +> 2024-11-30T15:53:07 chembl_compound-pdb_ccd ### Update TTL for chembl_compound-pubchem_compound if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubchem_compound.ttl is older than output/tsv/chembl_compound-pubchem_compound.tsv ## Convert output/tsv/chembl_compound-pubchem_compound.tsv => output/ttl/chembl_compound-pubchem_compound.ttl -< 2024-11-23T01:28:24 chembl_compound-pubchem_compound +< 2024-11-30T15:53:07 chembl_compound-pubchem_compound togoid-config config/chembl_compound-pubchem_compound convert -> 2024-11-23T01:28:48 chembl_compound-pubchem_compound +> 2024-11-30T15:53:24 chembl_compound-pubchem_compound ### Update TTL for chembl_compound-pubchem_substance if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubchem_substance.ttl is older than output/tsv/chembl_compound-pubchem_substance.tsv ## Convert output/tsv/chembl_compound-pubchem_substance.tsv => output/ttl/chembl_compound-pubchem_substance.ttl -< 2024-11-23T01:28:48 chembl_compound-pubchem_substance +< 2024-11-30T15:53:24 chembl_compound-pubchem_substance togoid-config config/chembl_compound-pubchem_substance convert -> 2024-11-23T01:28:54 chembl_compound-pubchem_substance +> 2024-11-30T15:53:28 chembl_compound-pubchem_substance ### Update TTL for chembl_compound-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubmed.ttl is older than output/tsv/chembl_compound-pubmed.tsv ## Convert output/tsv/chembl_compound-pubmed.tsv => output/ttl/chembl_compound-pubmed.ttl -< 2024-11-23T01:28:54 chembl_compound-pubmed +< 2024-11-30T15:53:28 chembl_compound-pubmed togoid-config config/chembl_compound-pubmed convert -> 2024-11-23T01:29:15 chembl_compound-pubmed +> 2024-11-30T15:53:40 chembl_compound-pubmed ### Update TTL for chembl_target-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/chembl_target-ensembl_gene.ttl is newer than output/tsv/chembl_target-ensembl_gene.tsv # => Preserving output/ttl/chembl_target-ensembl_gene.ttl ### Update TTL for chembl_target-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-go.ttl is older than output/tsv/chembl_target-go.tsv ## Convert output/tsv/chembl_target-go.tsv => output/ttl/chembl_target-go.ttl -< 2024-11-23T01:29:15 chembl_target-go +< 2024-11-30T15:53:40 chembl_target-go togoid-config config/chembl_target-go convert -> 2024-11-23T01:29:16 chembl_target-go +> 2024-11-30T15:53:40 chembl_target-go ### Update TTL for chembl_target-interpro if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-interpro.ttl is older than output/tsv/chembl_target-interpro.tsv ## Convert output/tsv/chembl_target-interpro.tsv => output/ttl/chembl_target-interpro.ttl -< 2024-11-23T01:29:16 chembl_target-interpro +< 2024-11-30T15:53:40 chembl_target-interpro togoid-config config/chembl_target-interpro convert -> 2024-11-23T01:29:17 chembl_target-interpro +> 2024-11-30T15:53:40 chembl_target-interpro ### Update TTL for chembl_target-pdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-pdb.ttl is older than output/tsv/chembl_target-pdb.tsv ## Convert output/tsv/chembl_target-pdb.tsv => output/ttl/chembl_target-pdb.ttl -< 2024-11-23T01:29:17 chembl_target-pdb +< 2024-11-30T15:53:40 chembl_target-pdb togoid-config config/chembl_target-pdb convert -> 2024-11-23T01:29:18 chembl_target-pdb +> 2024-11-30T15:53:41 chembl_target-pdb ### Update TTL for chembl_target-pfam if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-pfam.ttl is older than output/tsv/chembl_target-pfam.tsv ## Convert output/tsv/chembl_target-pfam.tsv => output/ttl/chembl_target-pfam.ttl -< 2024-11-23T01:29:18 chembl_target-pfam +< 2024-11-30T15:53:41 chembl_target-pfam togoid-config config/chembl_target-pfam convert -> 2024-11-23T01:29:18 chembl_target-pfam +> 2024-11-30T15:53:41 chembl_target-pfam ### Update TTL for chembl_target-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-reactome_pathway.ttl is older than output/tsv/chembl_target-reactome_pathway.tsv ## Convert output/tsv/chembl_target-reactome_pathway.tsv => output/ttl/chembl_target-reactome_pathway.ttl -< 2024-11-23T01:29:18 chembl_target-reactome_pathway +< 2024-11-30T15:53:41 chembl_target-reactome_pathway togoid-config config/chembl_target-reactome_pathway convert -> 2024-11-23T01:29:19 chembl_target-reactome_pathway +> 2024-11-30T15:53:41 chembl_target-reactome_pathway ### Update TTL for chembl_target-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-uniprot.ttl is older than output/tsv/chembl_target-uniprot.tsv ## Convert output/tsv/chembl_target-uniprot.tsv => output/ttl/chembl_target-uniprot.ttl -< 2024-11-23T01:29:19 chembl_target-uniprot +< 2024-11-30T15:53:41 chembl_target-uniprot togoid-config config/chembl_target-uniprot convert -> 2024-11-23T01:29:20 chembl_target-uniprot +> 2024-11-30T15:53:42 chembl_target-uniprot ### Update TTL for clinvar-dbsnp if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-dbsnp.ttl is older than output/tsv/clinvar-dbsnp.tsv ## Convert output/tsv/clinvar-dbsnp.tsv => output/ttl/clinvar-dbsnp.ttl -< 2024-11-23T01:29:20 clinvar-dbsnp +< 2024-11-30T15:53:42 clinvar-dbsnp togoid-config config/clinvar-dbsnp convert -> 2024-11-23T01:29:57 clinvar-dbsnp +> 2024-11-30T15:54:03 clinvar-dbsnp ### Update TTL for clinvar-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-hgnc.ttl is older than output/tsv/clinvar-hgnc.tsv ## Convert output/tsv/clinvar-hgnc.tsv => output/ttl/clinvar-hgnc.ttl -< 2024-11-23T01:29:57 clinvar-hgnc +< 2024-11-30T15:54:03 clinvar-hgnc togoid-config config/clinvar-hgnc convert -> 2024-11-23T01:30:30 clinvar-hgnc +> 2024-11-30T15:54:25 clinvar-hgnc ### Update TTL for clinvar-medgen if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-medgen.ttl is older than output/tsv/clinvar-medgen.tsv ## Convert output/tsv/clinvar-medgen.tsv => output/ttl/clinvar-medgen.ttl -< 2024-11-23T01:30:30 clinvar-medgen +< 2024-11-30T15:54:25 clinvar-medgen togoid-config config/clinvar-medgen convert -> 2024-11-23T01:31:15 clinvar-medgen +> 2024-11-30T15:54:55 clinvar-medgen ### Update TTL for clinvar-mondo if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-mondo.ttl is older than output/tsv/clinvar-mondo.tsv ## Convert output/tsv/clinvar-mondo.tsv => output/ttl/clinvar-mondo.ttl -< 2024-11-23T01:31:15 clinvar-mondo +< 2024-11-30T15:54:55 clinvar-mondo togoid-config config/clinvar-mondo convert -> 2024-11-23T01:31:38 clinvar-mondo +> 2024-11-30T15:55:10 clinvar-mondo ### Update TTL for clinvar-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-ncbigene.ttl is older than output/tsv/clinvar-ncbigene.tsv ## Convert output/tsv/clinvar-ncbigene.tsv => output/ttl/clinvar-ncbigene.ttl -< 2024-11-23T01:31:38 clinvar-ncbigene +< 2024-11-30T15:55:10 clinvar-ncbigene togoid-config config/clinvar-ncbigene convert -> 2024-11-23T01:32:08 clinvar-ncbigene +> 2024-11-30T15:55:32 clinvar-ncbigene ### Update TTL for clinvar-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-omim_phenotype.ttl is older than output/tsv/clinvar-omim_phenotype.tsv ## Convert output/tsv/clinvar-omim_phenotype.tsv => output/ttl/clinvar-omim_phenotype.ttl -< 2024-11-23T01:32:08 clinvar-omim_phenotype +< 2024-11-30T15:55:32 clinvar-omim_phenotype togoid-config config/clinvar-omim_phenotype convert -> 2024-11-23T01:32:26 clinvar-omim_phenotype +> 2024-11-30T15:55:44 clinvar-omim_phenotype ### Update TTL for clinvar-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-orphanet_phenotype.ttl is older than output/tsv/clinvar-orphanet_phenotype.tsv ## Convert output/tsv/clinvar-orphanet_phenotype.tsv => output/ttl/clinvar-orphanet_phenotype.ttl -< 2024-11-23T01:32:26 clinvar-orphanet_phenotype +< 2024-11-30T15:55:44 clinvar-orphanet_phenotype togoid-config config/clinvar-orphanet_phenotype convert -> 2024-11-23T01:32:45 clinvar-orphanet_phenotype +> 2024-11-30T15:55:58 clinvar-orphanet_phenotype ### Update TTL for clinvar-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-uniprot.ttl is older than output/tsv/clinvar-uniprot.tsv ## Convert output/tsv/clinvar-uniprot.tsv => output/ttl/clinvar-uniprot.ttl -< 2024-11-23T01:32:45 clinvar-uniprot +< 2024-11-30T15:55:58 clinvar-uniprot togoid-config config/clinvar-uniprot convert -> 2024-11-23T01:32:46 clinvar-uniprot +> 2024-11-30T15:55:59 clinvar-uniprot ### Update TTL for cog-insdc if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/cog-insdc.ttl is newer than output/tsv/cog-insdc.tsv # => Preserving output/ttl/cog-insdc.ttl @@ -5934,99 +6058,99 @@ togoid-config config/clinvar-uniprot convert ### Update TTL for doid-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-mesh.ttl is older than output/tsv/doid-mesh.tsv ## Convert output/tsv/doid-mesh.tsv => output/ttl/doid-mesh.ttl -< 2024-11-23T01:32:46 doid-mesh +< 2024-11-30T15:55:59 doid-mesh togoid-config config/doid-mesh convert -> 2024-11-23T01:32:46 doid-mesh +> 2024-11-30T15:55:59 doid-mesh ### Update TTL for doid-ncit_disease if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-ncit_disease.ttl is older than output/tsv/doid-ncit_disease.tsv ## Convert output/tsv/doid-ncit_disease.tsv => output/ttl/doid-ncit_disease.ttl -< 2024-11-23T01:32:46 doid-ncit_disease +< 2024-11-30T15:55:59 doid-ncit_disease togoid-config config/doid-ncit_disease convert -> 2024-11-23T01:32:47 doid-ncit_disease +> 2024-11-30T15:55:59 doid-ncit_disease ### Update TTL for doid-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-omim_phenotype.ttl is older than output/tsv/doid-omim_phenotype.tsv ## Convert output/tsv/doid-omim_phenotype.tsv => output/ttl/doid-omim_phenotype.ttl -< 2024-11-23T01:32:47 doid-omim_phenotype +< 2024-11-30T15:55:59 doid-omim_phenotype togoid-config config/doid-omim_phenotype convert -> 2024-11-23T01:32:47 doid-omim_phenotype +> 2024-11-30T15:55:59 doid-omim_phenotype ### Update TTL for ensembl_gene-affy_probeset if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-affy_probeset.ttl is older than output/tsv/ensembl_gene-affy_probeset.tsv ## Convert output/tsv/ensembl_gene-affy_probeset.tsv => output/ttl/ensembl_gene-affy_probeset.ttl -< 2024-11-23T01:32:47 ensembl_gene-affy_probeset +< 2024-11-30T15:55:59 ensembl_gene-affy_probeset togoid-config config/ensembl_gene-affy_probeset convert -> 2024-11-23T01:32:49 ensembl_gene-affy_probeset +> 2024-11-30T15:56:00 ensembl_gene-affy_probeset ### Update TTL for ensembl_gene-ensembl_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ensembl_protein.ttl is older than output/tsv/ensembl_gene-ensembl_protein.tsv ## Convert output/tsv/ensembl_gene-ensembl_protein.tsv => output/ttl/ensembl_gene-ensembl_protein.ttl -< 2024-11-23T01:32:49 ensembl_gene-ensembl_protein +< 2024-11-30T15:56:00 ensembl_gene-ensembl_protein togoid-config config/ensembl_gene-ensembl_protein convert -> 2024-11-23T01:37:38 ensembl_gene-ensembl_protein +> 2024-11-30T15:58:08 ensembl_gene-ensembl_protein ### Update TTL for ensembl_gene-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ensembl_transcript.ttl is older than output/tsv/ensembl_gene-ensembl_transcript.tsv ## Convert output/tsv/ensembl_gene-ensembl_transcript.tsv => output/ttl/ensembl_gene-ensembl_transcript.ttl -< 2024-11-23T01:37:38 ensembl_gene-ensembl_transcript +< 2024-11-30T15:58:08 ensembl_gene-ensembl_transcript togoid-config config/ensembl_gene-ensembl_transcript convert -> 2024-11-23T01:42:44 ensembl_gene-ensembl_transcript +> 2024-11-30T16:00:41 ensembl_gene-ensembl_transcript ### Update TTL for ensembl_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-hgnc.ttl is older than output/tsv/ensembl_gene-hgnc.tsv ## Convert output/tsv/ensembl_gene-hgnc.tsv => output/ttl/ensembl_gene-hgnc.ttl -< 2024-11-23T01:42:44 ensembl_gene-hgnc +< 2024-11-30T16:00:41 ensembl_gene-hgnc togoid-config config/ensembl_gene-hgnc convert -> 2024-11-23T01:42:45 ensembl_gene-hgnc +> 2024-11-30T16:00:41 ensembl_gene-hgnc ### Update TTL for ensembl_gene-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ncbigene.ttl is older than output/tsv/ensembl_gene-ncbigene.tsv ## Convert output/tsv/ensembl_gene-ncbigene.tsv => output/ttl/ensembl_gene-ncbigene.ttl -< 2024-11-23T01:42:45 ensembl_gene-ncbigene +< 2024-11-30T16:00:41 ensembl_gene-ncbigene togoid-config config/ensembl_gene-ncbigene convert -> 2024-11-23T01:45:16 ensembl_gene-ncbigene +> 2024-11-30T16:02:57 ensembl_gene-ncbigene ### Update TTL for ensembl_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-uniprot.ttl is older than output/tsv/ensembl_gene-uniprot.tsv ## Convert output/tsv/ensembl_gene-uniprot.tsv => output/ttl/ensembl_gene-uniprot.ttl -< 2024-11-23T01:45:16 ensembl_gene-uniprot +< 2024-11-30T16:02:57 ensembl_gene-uniprot togoid-config config/ensembl_gene-uniprot convert -> 2024-11-23T01:46:09 ensembl_gene-uniprot +> 2024-11-30T16:03:45 ensembl_gene-uniprot ### Update TTL for ensembl_protein-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_protein-ensembl_transcript.ttl is older than output/tsv/ensembl_protein-ensembl_transcript.tsv ## Convert output/tsv/ensembl_protein-ensembl_transcript.tsv => output/ttl/ensembl_protein-ensembl_transcript.ttl -< 2024-11-23T01:46:13 ensembl_protein-ensembl_transcript +< 2024-11-30T16:03:45 ensembl_protein-ensembl_transcript togoid-config config/ensembl_protein-ensembl_transcript convert -> 2024-11-23T01:49:55 ensembl_protein-ensembl_transcript +> 2024-11-30T16:05:51 ensembl_protein-ensembl_transcript ### Update TTL for ensembl_transcript-affy_probeset if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-affy_probeset.ttl is older than output/tsv/ensembl_transcript-affy_probeset.tsv ## Convert output/tsv/ensembl_transcript-affy_probeset.tsv => output/ttl/ensembl_transcript-affy_probeset.ttl -< 2024-11-23T01:49:55 ensembl_transcript-affy_probeset +< 2024-11-30T16:05:51 ensembl_transcript-affy_probeset togoid-config config/ensembl_transcript-affy_probeset convert -> 2024-11-23T01:49:58 ensembl_transcript-affy_probeset +> 2024-11-30T16:05:53 ensembl_transcript-affy_probeset ### Update TTL for ensembl_transcript-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-go.ttl is older than output/tsv/ensembl_transcript-go.tsv ## Convert output/tsv/ensembl_transcript-go.tsv => output/ttl/ensembl_transcript-go.ttl -< 2024-11-23T01:49:58 ensembl_transcript-go +< 2024-11-30T16:05:53 ensembl_transcript-go togoid-config config/ensembl_transcript-go convert -> 2024-11-23T02:03:36 ensembl_transcript-go +> 2024-11-30T16:18:08 ensembl_transcript-go ### Update TTL for ensembl_transcript-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-hgnc.ttl is older than output/tsv/ensembl_transcript-hgnc.tsv ## Convert output/tsv/ensembl_transcript-hgnc.tsv => output/ttl/ensembl_transcript-hgnc.ttl -< 2024-11-23T02:03:36 ensembl_transcript-hgnc +< 2024-11-30T16:18:08 ensembl_transcript-hgnc togoid-config config/ensembl_transcript-hgnc convert -> 2024-11-23T02:03:39 ensembl_transcript-hgnc +> 2024-11-30T16:18:11 ensembl_transcript-hgnc ### Update TTL for ensembl_transcript-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-refseq_rna.ttl is older than output/tsv/ensembl_transcript-refseq_rna.tsv ## Convert output/tsv/ensembl_transcript-refseq_rna.tsv => output/ttl/ensembl_transcript-refseq_rna.ttl -< 2024-11-23T02:03:39 ensembl_transcript-refseq_rna +< 2024-11-30T16:18:11 ensembl_transcript-refseq_rna togoid-config config/ensembl_transcript-refseq_rna convert -> 2024-11-23T02:14:24 ensembl_transcript-refseq_rna +> 2024-11-30T16:26:13 ensembl_transcript-refseq_rna ### Update TTL for gea-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/gea-bioproject.ttl is older than output/tsv/gea-bioproject.tsv ## Convert output/tsv/gea-bioproject.tsv => output/ttl/gea-bioproject.ttl -< 2024-11-23T02:14:24 gea-bioproject +< 2024-11-30T16:26:13 gea-bioproject togoid-config config/gea-bioproject convert -> 2024-11-23T02:14:25 gea-bioproject +> 2024-11-30T16:26:14 gea-bioproject ### Update TTL for gea-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/gea-biosample.ttl is older than output/tsv/gea-biosample.tsv ## Convert output/tsv/gea-biosample.tsv => output/ttl/gea-biosample.ttl -< 2024-11-23T02:14:25 gea-biosample +< 2024-11-30T16:26:14 gea-biosample togoid-config config/gea-biosample convert -> 2024-11-23T02:14:25 gea-biosample +> 2024-11-30T16:26:14 gea-biosample ### Update TTL for glycomotif-glytoucan if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/glycomotif-glytoucan.ttl is newer than output/tsv/glycomotif-glytoucan.tsv # => Preserving output/ttl/glycomotif-glytoucan.ttl @@ -6036,102 +6160,102 @@ togoid-config config/gea-biosample convert ### Update TTL for glytoucan-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/glytoucan-ncbigene.ttl is older than output/tsv/glytoucan-ncbigene.tsv ## Convert output/tsv/glytoucan-ncbigene.tsv => output/ttl/glytoucan-ncbigene.ttl -< 2024-11-23T02:14:26 glytoucan-ncbigene +< 2024-11-30T16:26:14 glytoucan-ncbigene togoid-config config/glytoucan-ncbigene convert -> 2024-11-23T02:14:26 glytoucan-ncbigene +> 2024-11-30T16:26:14 glytoucan-ncbigene ### Update TTL for glytoucan-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/glytoucan-uniprot.ttl is older than output/tsv/glytoucan-uniprot.tsv ## Convert output/tsv/glytoucan-uniprot.tsv => output/ttl/glytoucan-uniprot.ttl -< 2024-11-23T02:14:26 glytoucan-uniprot +< 2024-11-30T16:26:14 glytoucan-uniprot togoid-config config/glytoucan-uniprot convert -> 2024-11-23T02:14:27 glytoucan-uniprot +> 2024-11-30T16:26:15 glytoucan-uniprot ### Update TTL for hgnc-ccds if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/hgnc-ccds.ttl is newer than output/tsv/hgnc-ccds.tsv # => Preserving output/ttl/hgnc-ccds.ttl ### Update TTL for hgnc-ec if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-ec.ttl is older than output/tsv/hgnc-ec.tsv ## Convert output/tsv/hgnc-ec.tsv => output/ttl/hgnc-ec.ttl -< 2024-11-23T02:14:27 hgnc-ec +< 2024-11-30T16:26:15 hgnc-ec togoid-config config/hgnc-ec convert -> 2024-11-23T02:14:28 hgnc-ec +> 2024-11-30T16:26:15 hgnc-ec ### Update TTL for hgnc-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-ensembl_gene.ttl is older than output/tsv/hgnc-ensembl_gene.tsv ## Convert output/tsv/hgnc-ensembl_gene.tsv => output/ttl/hgnc-ensembl_gene.ttl -< 2024-11-23T02:14:28 hgnc-ensembl_gene +< 2024-11-30T16:26:15 hgnc-ensembl_gene togoid-config config/hgnc-ensembl_gene convert -> 2024-11-23T02:14:29 hgnc-ensembl_gene +> 2024-11-30T16:26:16 hgnc-ensembl_gene ### Update TTL for hgnc-hgnc_symbol if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-hgnc_symbol.ttl is older than output/tsv/hgnc-hgnc_symbol.tsv ## Convert output/tsv/hgnc-hgnc_symbol.tsv => output/ttl/hgnc-hgnc_symbol.ttl -< 2024-11-23T02:14:29 hgnc-hgnc_symbol +< 2024-11-30T16:26:16 hgnc-hgnc_symbol togoid-config config/hgnc-hgnc_symbol convert -> 2024-11-23T02:14:30 hgnc-hgnc_symbol +> 2024-11-30T16:26:16 hgnc-hgnc_symbol ### Update TTL for hgnc-insdc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-insdc.ttl is older than output/tsv/hgnc-insdc.tsv ## Convert output/tsv/hgnc-insdc.tsv => output/ttl/hgnc-insdc.ttl -< 2024-11-23T02:14:30 hgnc-insdc +< 2024-11-30T16:26:16 hgnc-insdc togoid-config config/hgnc-insdc convert -> 2024-11-23T02:14:30 hgnc-insdc +> 2024-11-30T16:26:17 hgnc-insdc ### Update TTL for hgnc-lrg if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-lrg.ttl is older than output/tsv/hgnc-lrg.tsv ## Convert output/tsv/hgnc-lrg.tsv => output/ttl/hgnc-lrg.ttl -< 2024-11-23T02:14:30 hgnc-lrg +< 2024-11-30T16:26:17 hgnc-lrg togoid-config config/hgnc-lrg convert -> 2024-11-23T02:14:31 hgnc-lrg +> 2024-11-30T16:26:17 hgnc-lrg ### Update TTL for hgnc-mgi_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-mgi_gene.ttl is older than output/tsv/hgnc-mgi_gene.tsv ## Convert output/tsv/hgnc-mgi_gene.tsv => output/ttl/hgnc-mgi_gene.ttl -< 2024-11-23T02:14:31 hgnc-mgi_gene +< 2024-11-30T16:26:17 hgnc-mgi_gene togoid-config config/hgnc-mgi_gene convert -> 2024-11-23T02:14:31 hgnc-mgi_gene +> 2024-11-30T16:26:18 hgnc-mgi_gene ### Update TTL for hgnc-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-mirbase.ttl is older than output/tsv/hgnc-mirbase.tsv ## Convert output/tsv/hgnc-mirbase.tsv => output/ttl/hgnc-mirbase.ttl -< 2024-11-23T02:14:31 hgnc-mirbase +< 2024-11-30T16:26:18 hgnc-mirbase togoid-config config/hgnc-mirbase convert -> 2024-11-23T02:14:32 hgnc-mirbase +> 2024-11-30T16:26:18 hgnc-mirbase ### Update TTL for hgnc-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-ncbigene.ttl is older than output/tsv/hgnc-ncbigene.tsv ## Convert output/tsv/hgnc-ncbigene.tsv => output/ttl/hgnc-ncbigene.ttl -< 2024-11-23T02:14:32 hgnc-ncbigene +< 2024-11-30T16:26:18 hgnc-ncbigene togoid-config config/hgnc-ncbigene convert -> 2024-11-23T02:14:32 hgnc-ncbigene +> 2024-11-30T16:26:18 hgnc-ncbigene ### Update TTL for hgnc-omim_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-omim_gene.ttl is older than output/tsv/hgnc-omim_gene.tsv ## Convert output/tsv/hgnc-omim_gene.tsv => output/ttl/hgnc-omim_gene.ttl -< 2024-11-23T02:14:32 hgnc-omim_gene +< 2024-11-30T16:26:18 hgnc-omim_gene togoid-config config/hgnc-omim_gene convert -> 2024-11-23T02:14:33 hgnc-omim_gene +> 2024-11-30T16:26:19 hgnc-omim_gene ### Update TTL for hgnc-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-pubmed.ttl is older than output/tsv/hgnc-pubmed.tsv ## Convert output/tsv/hgnc-pubmed.tsv => output/ttl/hgnc-pubmed.ttl -< 2024-11-23T02:14:33 hgnc-pubmed +< 2024-11-30T16:26:19 hgnc-pubmed togoid-config config/hgnc-pubmed convert -> 2024-11-23T02:14:33 hgnc-pubmed +> 2024-11-30T16:26:19 hgnc-pubmed ### Update TTL for hgnc-refseq_genomic if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-refseq_genomic.ttl is older than output/tsv/hgnc-refseq_genomic.tsv ## Convert output/tsv/hgnc-refseq_genomic.tsv => output/ttl/hgnc-refseq_genomic.ttl -< 2024-11-23T02:14:33 hgnc-refseq_genomic +< 2024-11-30T16:26:19 hgnc-refseq_genomic togoid-config config/hgnc-refseq_genomic convert -> 2024-11-23T02:14:34 hgnc-refseq_genomic +> 2024-11-30T16:26:20 hgnc-refseq_genomic ### Update TTL for hgnc-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-refseq_rna.ttl is older than output/tsv/hgnc-refseq_rna.tsv ## Convert output/tsv/hgnc-refseq_rna.tsv => output/ttl/hgnc-refseq_rna.ttl -< 2024-11-23T02:14:34 hgnc-refseq_rna +< 2024-11-30T16:26:20 hgnc-refseq_rna togoid-config config/hgnc-refseq_rna convert -> 2024-11-23T02:14:35 hgnc-refseq_rna +> 2024-11-30T16:26:20 hgnc-refseq_rna ### Update TTL for hgnc-rgd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-rgd.ttl is older than output/tsv/hgnc-rgd.tsv ## Convert output/tsv/hgnc-rgd.tsv => output/ttl/hgnc-rgd.ttl -< 2024-11-23T02:14:35 hgnc-rgd +< 2024-11-30T16:26:20 hgnc-rgd togoid-config config/hgnc-rgd convert -> 2024-11-23T02:14:35 hgnc-rgd +> 2024-11-30T16:26:20 hgnc-rgd ### Update TTL for hgnc-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-uniprot.ttl is older than output/tsv/hgnc-uniprot.tsv ## Convert output/tsv/hgnc-uniprot.tsv => output/ttl/hgnc-uniprot.ttl -< 2024-11-23T02:14:35 hgnc-uniprot +< 2024-11-30T16:26:20 hgnc-uniprot togoid-config config/hgnc-uniprot convert -> 2024-11-23T02:14:36 hgnc-uniprot +> 2024-11-30T16:26:21 hgnc-uniprot ### Update TTL for hmdb-chebi if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/hmdb-chebi.ttl is newer than output/tsv/hmdb-chebi.tsv # => Preserving output/ttl/hmdb-chebi.ttl @@ -6150,9 +6274,9 @@ togoid-config config/hgnc-uniprot convert ### Update TTL for hp_inheritance-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hp_inheritance-omim_phenotype.ttl is older than output/tsv/hp_inheritance-omim_phenotype.tsv ## Convert output/tsv/hp_inheritance-omim_phenotype.tsv => output/ttl/hp_inheritance-omim_phenotype.ttl -< 2024-11-23T02:14:36 hp_inheritance-omim_phenotype +< 2024-11-30T16:26:21 hp_inheritance-omim_phenotype togoid-config config/hp_inheritance-omim_phenotype convert -> 2024-11-23T02:14:37 hp_inheritance-omim_phenotype +> 2024-11-30T16:26:21 hp_inheritance-omim_phenotype ### Update TTL for hp_phenotype-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/hp_phenotype-omim_phenotype.ttl is newer than output/tsv/hp_phenotype-omim_phenotype.tsv # => Preserving output/ttl/hp_phenotype-omim_phenotype.ttl @@ -6162,69 +6286,93 @@ togoid-config config/hp_inheritance-omim_phenotype convert ### Update TTL for insdc-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc-bioproject.ttl is older than output/tsv/insdc-bioproject.tsv ## Convert output/tsv/insdc-bioproject.tsv => output/ttl/insdc-bioproject.ttl -< 2024-11-23T02:14:37 insdc-bioproject +< 2024-11-30T16:26:21 insdc-bioproject togoid-config config/insdc-bioproject convert -> 2024-11-23T02:24:09 insdc-bioproject +> 2024-11-30T16:35:30 insdc-bioproject ### Update TTL for insdc-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc-biosample.ttl is older than output/tsv/insdc-biosample.tsv ## Convert output/tsv/insdc-biosample.tsv => output/ttl/insdc-biosample.ttl -< 2024-11-23T02:24:09 insdc-biosample +< 2024-11-30T16:35:30 insdc-biosample togoid-config config/insdc-biosample convert -> 2024-11-23T03:03:22 insdc-biosample +> 2024-11-30T17:15:31 insdc-biosample ### Update TTL for insdc_master-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc_master-bioproject.ttl is older than output/tsv/insdc_master-bioproject.tsv ## Convert output/tsv/insdc_master-bioproject.tsv => output/ttl/insdc_master-bioproject.ttl -< 2024-11-23T03:03:22 insdc_master-bioproject +< 2024-11-30T17:15:31 insdc_master-bioproject togoid-config config/insdc_master-bioproject convert -> 2024-11-23T03:03:36 insdc_master-bioproject +> 2024-11-30T17:15:44 insdc_master-bioproject ### Update TTL for insdc_master-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc_master-biosample.ttl is older than output/tsv/insdc_master-biosample.tsv ## Convert output/tsv/insdc_master-biosample.tsv => output/ttl/insdc_master-biosample.ttl -< 2024-11-23T03:03:36 insdc_master-biosample +< 2024-11-30T17:15:44 insdc_master-biosample togoid-config config/insdc_master-biosample convert -> 2024-11-23T03:03:50 insdc_master-biosample -### Update TTL for interpro-go if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-go.ttl is newer than output/tsv/interpro-go.tsv -# => Preserving output/ttl/interpro-go.ttl -### Update TTL for interpro-pdb if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-pdb.ttl is newer than output/tsv/interpro-pdb.tsv -# => Preserving output/ttl/interpro-pdb.ttl -### Update TTL for interpro-pfam if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-pfam.ttl is newer than output/tsv/interpro-pfam.tsv -# => Preserving output/ttl/interpro-pfam.ttl -### Update TTL for interpro-prosite if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-prosite.ttl is newer than output/tsv/interpro-prosite.tsv -# => Preserving output/ttl/interpro-prosite.ttl -### Update TTL for interpro-pubmed if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-pubmed.ttl is newer than output/tsv/interpro-pubmed.tsv -# => Preserving output/ttl/interpro-pubmed.ttl -### Update TTL for interpro-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-reactome_pathway.ttl is newer than output/tsv/interpro-reactome_pathway.tsv -# => Preserving output/ttl/interpro-reactome_pathway.ttl -### Update TTL for interpro-smart if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-smart.ttl is newer than output/tsv/interpro-smart.tsv -# => Preserving output/ttl/interpro-smart.ttl -### Update TTL for interpro-uniprot if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-uniprot.ttl is newer than output/tsv/interpro-uniprot.tsv -# => Preserving output/ttl/interpro-uniprot.ttl +> 2024-11-30T17:15:57 insdc_master-biosample +### Update TTL for interpro-go if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-go.ttl is older than output/tsv/interpro-go.tsv +## Convert output/tsv/interpro-go.tsv => output/ttl/interpro-go.ttl +< 2024-11-30T17:15:57 interpro-go +togoid-config config/interpro-go convert +> 2024-11-30T17:15:58 interpro-go +### Update TTL for interpro-pdb if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-pdb.ttl is older than output/tsv/interpro-pdb.tsv +## Convert output/tsv/interpro-pdb.tsv => output/ttl/interpro-pdb.ttl +< 2024-11-30T17:15:58 interpro-pdb +togoid-config config/interpro-pdb convert +> 2024-11-30T17:16:10 interpro-pdb +### Update TTL for interpro-pfam if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-pfam.ttl is older than output/tsv/interpro-pfam.tsv +## Convert output/tsv/interpro-pfam.tsv => output/ttl/interpro-pfam.ttl +< 2024-11-30T17:16:10 interpro-pfam +togoid-config config/interpro-pfam convert +> 2024-11-30T17:16:10 interpro-pfam +### Update TTL for interpro-prosite if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-prosite.ttl is older than output/tsv/interpro-prosite.tsv +## Convert output/tsv/interpro-prosite.tsv => output/ttl/interpro-prosite.ttl +< 2024-11-30T17:16:10 interpro-prosite +togoid-config config/interpro-prosite convert +> 2024-11-30T17:16:11 interpro-prosite +### Update TTL for interpro-pubmed if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-pubmed.ttl is older than output/tsv/interpro-pubmed.tsv +## Convert output/tsv/interpro-pubmed.tsv => output/ttl/interpro-pubmed.ttl +< 2024-11-30T17:16:11 interpro-pubmed +togoid-config config/interpro-pubmed convert +> 2024-11-30T17:16:12 interpro-pubmed +### Update TTL for interpro-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-reactome_pathway.ttl is older than output/tsv/interpro-reactome_pathway.tsv +## Convert output/tsv/interpro-reactome_pathway.tsv => output/ttl/interpro-reactome_pathway.ttl +< 2024-11-30T17:16:12 interpro-reactome_pathway +togoid-config config/interpro-reactome_pathway convert +> 2024-11-30T17:16:15 interpro-reactome_pathway +### Update TTL for interpro-smart if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-smart.ttl is older than output/tsv/interpro-smart.tsv +## Convert output/tsv/interpro-smart.tsv => output/ttl/interpro-smart.ttl +< 2024-11-30T17:16:15 interpro-smart +togoid-config config/interpro-smart convert +> 2024-11-30T17:16:16 interpro-smart +### Update TTL for interpro-uniprot if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-uniprot.ttl is older than output/tsv/interpro-uniprot.tsv +## Convert output/tsv/interpro-uniprot.tsv => output/ttl/interpro-uniprot.ttl +< 2024-11-30T17:16:16 interpro-uniprot +togoid-config config/interpro-uniprot convert +> 2024-11-30T22:16:59 interpro-uniprot ### Update TTL for jga_study-jga_dataset if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/jga_study-jga_dataset.ttl is older than output/tsv/jga_study-jga_dataset.tsv ## Convert output/tsv/jga_study-jga_dataset.tsv => output/ttl/jga_study-jga_dataset.ttl -< 2024-11-23T03:03:50 jga_study-jga_dataset +< 2024-11-30T22:16:59 jga_study-jga_dataset togoid-config config/jga_study-jga_dataset convert -> 2024-11-23T03:03:50 jga_study-jga_dataset +> 2024-11-30T22:17:00 jga_study-jga_dataset ### Update TTL for jga_study-nbdc_human_db if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/jga_study-nbdc_human_db.ttl is older than output/tsv/jga_study-nbdc_human_db.tsv ## Convert output/tsv/jga_study-nbdc_human_db.tsv => output/ttl/jga_study-nbdc_human_db.ttl -< 2024-11-23T03:03:50 jga_study-nbdc_human_db +< 2024-11-30T22:17:00 jga_study-nbdc_human_db togoid-config config/jga_study-nbdc_human_db convert -> 2024-11-23T03:03:50 jga_study-nbdc_human_db +> 2024-11-30T22:17:00 jga_study-nbdc_human_db ### Update TTL for jga_study-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/jga_study-pubmed.ttl is older than output/tsv/jga_study-pubmed.tsv ## Convert output/tsv/jga_study-pubmed.tsv => output/ttl/jga_study-pubmed.ttl -< 2024-11-23T03:03:50 jga_study-pubmed +< 2024-11-30T22:17:00 jga_study-pubmed togoid-config config/jga_study-pubmed convert -> 2024-11-23T03:03:51 jga_study-pubmed +> 2024-11-30T22:17:00 jga_study-pubmed ### Update TTL for lipidmaps-chebi if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/lipidmaps-chebi.ttl is newer than output/tsv/lipidmaps-chebi.tsv # => Preserving output/ttl/lipidmaps-chebi.ttl @@ -6243,87 +6391,87 @@ togoid-config config/jga_study-pubmed convert ### Update TTL for medgen-hp_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-hp_phenotype.ttl is older than output/tsv/medgen-hp_phenotype.tsv ## Convert output/tsv/medgen-hp_phenotype.tsv => output/ttl/medgen-hp_phenotype.ttl -< 2024-11-23T03:03:51 medgen-hp_phenotype +< 2024-11-30T22:17:00 medgen-hp_phenotype togoid-config config/medgen-hp_phenotype convert -> 2024-11-23T03:03:51 medgen-hp_phenotype +> 2024-11-30T22:17:01 medgen-hp_phenotype ### Update TTL for medgen-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-mesh.ttl is older than output/tsv/medgen-mesh.tsv ## Convert output/tsv/medgen-mesh.tsv => output/ttl/medgen-mesh.ttl -< 2024-11-23T03:03:51 medgen-mesh +< 2024-11-30T22:17:01 medgen-mesh togoid-config config/medgen-mesh convert -> 2024-11-23T03:03:51 medgen-mesh +> 2024-11-30T22:17:01 medgen-mesh ### Update TTL for medgen-mondo if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-mondo.ttl is older than output/tsv/medgen-mondo.tsv ## Convert output/tsv/medgen-mondo.tsv => output/ttl/medgen-mondo.ttl -< 2024-11-23T03:03:51 medgen-mondo +< 2024-11-30T22:17:01 medgen-mondo togoid-config config/medgen-mondo convert -> 2024-11-23T03:03:52 medgen-mondo +> 2024-11-30T22:17:02 medgen-mondo ### Update TTL for medgen-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-ncbigene.ttl is older than output/tsv/medgen-ncbigene.tsv ## Convert output/tsv/medgen-ncbigene.tsv => output/ttl/medgen-ncbigene.ttl -< 2024-11-23T03:03:52 medgen-ncbigene +< 2024-11-30T22:17:02 medgen-ncbigene togoid-config config/medgen-ncbigene convert -> 2024-11-23T03:03:52 medgen-ncbigene +> 2024-11-30T22:17:02 medgen-ncbigene ### Update TTL for medgen-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-omim_phenotype.ttl is older than output/tsv/medgen-omim_phenotype.tsv ## Convert output/tsv/medgen-omim_phenotype.tsv => output/ttl/medgen-omim_phenotype.ttl -< 2024-11-23T03:03:52 medgen-omim_phenotype +< 2024-11-30T22:17:02 medgen-omim_phenotype togoid-config config/medgen-omim_phenotype convert -> 2024-11-23T03:03:52 medgen-omim_phenotype +> 2024-11-30T22:17:02 medgen-omim_phenotype ### Update TTL for medgen-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-orphanet_phenotype.ttl is older than output/tsv/medgen-orphanet_phenotype.tsv ## Convert output/tsv/medgen-orphanet_phenotype.tsv => output/ttl/medgen-orphanet_phenotype.ttl -< 2024-11-23T03:03:52 medgen-orphanet_phenotype +< 2024-11-30T22:17:02 medgen-orphanet_phenotype togoid-config config/medgen-orphanet_phenotype convert -> 2024-11-23T03:03:53 medgen-orphanet_phenotype +> 2024-11-30T22:17:03 medgen-orphanet_phenotype ### Update TTL for mgi_gene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-ensembl_gene.ttl is older than output/tsv/mgi_gene-ensembl_gene.tsv ## Convert output/tsv/mgi_gene-ensembl_gene.tsv => output/ttl/mgi_gene-ensembl_gene.ttl -< 2024-11-23T03:03:53 mgi_gene-ensembl_gene +< 2024-11-30T22:17:03 mgi_gene-ensembl_gene togoid-config config/mgi_gene-ensembl_gene convert -> 2024-11-23T03:03:53 mgi_gene-ensembl_gene +> 2024-11-30T22:17:04 mgi_gene-ensembl_gene ### Update TTL for mgi_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-hgnc.ttl is older than output/tsv/mgi_gene-hgnc.tsv ## Convert output/tsv/mgi_gene-hgnc.tsv => output/ttl/mgi_gene-hgnc.ttl -< 2024-11-23T03:03:53 mgi_gene-hgnc +< 2024-11-30T22:17:04 mgi_gene-hgnc togoid-config config/mgi_gene-hgnc convert -> 2024-11-23T03:03:54 mgi_gene-hgnc +> 2024-11-30T22:17:04 mgi_gene-hgnc ### Update TTL for mgi_gene-mgi_allele if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-mgi_allele.ttl is older than output/tsv/mgi_gene-mgi_allele.tsv ## Convert output/tsv/mgi_gene-mgi_allele.tsv => output/ttl/mgi_gene-mgi_allele.ttl -< 2024-11-23T03:03:54 mgi_gene-mgi_allele +< 2024-11-30T22:17:04 mgi_gene-mgi_allele togoid-config config/mgi_gene-mgi_allele convert -> 2024-11-23T03:03:55 mgi_gene-mgi_allele +> 2024-11-30T22:17:05 mgi_gene-mgi_allele ### Update TTL for mgi_gene-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-ncbigene.ttl is older than output/tsv/mgi_gene-ncbigene.tsv ## Convert output/tsv/mgi_gene-ncbigene.tsv => output/ttl/mgi_gene-ncbigene.ttl -< 2024-11-23T03:03:55 mgi_gene-ncbigene +< 2024-11-30T22:17:05 mgi_gene-ncbigene togoid-config config/mgi_gene-ncbigene convert -> 2024-11-23T03:03:56 mgi_gene-ncbigene +> 2024-11-30T22:17:06 mgi_gene-ncbigene ### Update TTL for mgi_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-uniprot.ttl is older than output/tsv/mgi_gene-uniprot.tsv ## Convert output/tsv/mgi_gene-uniprot.tsv => output/ttl/mgi_gene-uniprot.ttl -< 2024-11-23T03:03:56 mgi_gene-uniprot +< 2024-11-30T22:17:06 mgi_gene-uniprot togoid-config config/mgi_gene-uniprot convert -> 2024-11-23T03:03:57 mgi_gene-uniprot +> 2024-11-30T22:17:07 mgi_gene-uniprot ### Update TTL for mgi_genotype-doid if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-doid.ttl is older than output/tsv/mgi_genotype-doid.tsv ## Convert output/tsv/mgi_genotype-doid.tsv => output/ttl/mgi_genotype-doid.ttl -< 2024-11-23T03:03:57 mgi_genotype-doid +< 2024-11-30T22:17:07 mgi_genotype-doid togoid-config config/mgi_genotype-doid convert -> 2024-11-23T03:03:57 mgi_genotype-doid +> 2024-11-30T22:17:07 mgi_genotype-doid ### Update TTL for mgi_genotype-mgi_allele if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-mgi_allele.ttl is older than output/tsv/mgi_genotype-mgi_allele.tsv ## Convert output/tsv/mgi_genotype-mgi_allele.tsv => output/ttl/mgi_genotype-mgi_allele.ttl -< 2024-11-23T03:03:57 mgi_genotype-mgi_allele +< 2024-11-30T22:17:07 mgi_genotype-mgi_allele togoid-config config/mgi_genotype-mgi_allele convert -> 2024-11-23T03:03:58 mgi_genotype-mgi_allele +> 2024-11-30T22:17:09 mgi_genotype-mgi_allele ### Update TTL for mgi_genotype-mp if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-mp.ttl is older than output/tsv/mgi_genotype-mp.tsv ## Convert output/tsv/mgi_genotype-mp.tsv => output/ttl/mgi_genotype-mp.ttl -< 2024-11-23T03:03:58 mgi_genotype-mp +< 2024-11-30T22:17:09 mgi_genotype-mp togoid-config config/mgi_genotype-mp convert -> 2024-11-23T03:04:01 mgi_genotype-mp +> 2024-11-30T22:17:12 mgi_genotype-mp ### Update TTL for mondo-doid if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/mondo-doid.ttl is newer than output/tsv/mondo-doid.tsv # => Preserving output/ttl/mondo-doid.ttl @@ -6345,135 +6493,135 @@ togoid-config config/mgi_genotype-mp convert ### Update TTL for nando-mondo if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/nando-mondo.ttl is older than output/tsv/nando-mondo.tsv ## Convert output/tsv/nando-mondo.tsv => output/ttl/nando-mondo.ttl -< 2024-11-23T03:04:01 nando-mondo +< 2024-11-30T22:17:12 nando-mondo togoid-config config/nando-mondo convert -> 2024-11-23T03:04:02 nando-mondo +> 2024-11-30T22:17:12 nando-mondo ### Update TTL for ncbigene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_gene.ttl is older than output/tsv/ncbigene-ensembl_gene.tsv ## Convert output/tsv/ncbigene-ensembl_gene.tsv => output/ttl/ncbigene-ensembl_gene.ttl -< 2024-11-23T03:04:02 ncbigene-ensembl_gene +< 2024-11-30T22:17:12 ncbigene-ensembl_gene togoid-config config/ncbigene-ensembl_gene convert -> 2024-11-23T03:05:37 ncbigene-ensembl_gene +> 2024-11-30T22:18:55 ncbigene-ensembl_gene ### Update TTL for ncbigene-ensembl_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_protein.ttl is older than output/tsv/ncbigene-ensembl_protein.tsv ## Convert output/tsv/ncbigene-ensembl_protein.tsv => output/ttl/ncbigene-ensembl_protein.ttl -< 2024-11-23T03:05:37 ncbigene-ensembl_protein +< 2024-11-30T22:18:55 ncbigene-ensembl_protein togoid-config config/ncbigene-ensembl_protein convert -> 2024-11-23T03:07:31 ncbigene-ensembl_protein +> 2024-11-30T22:20:48 ncbigene-ensembl_protein ### Update TTL for ncbigene-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_transcript.ttl is older than output/tsv/ncbigene-ensembl_transcript.tsv ## Convert output/tsv/ncbigene-ensembl_transcript.tsv => output/ttl/ncbigene-ensembl_transcript.ttl -< 2024-11-23T03:07:31 ncbigene-ensembl_transcript +< 2024-11-30T22:20:48 ncbigene-ensembl_transcript togoid-config config/ncbigene-ensembl_transcript convert -> 2024-11-23T03:10:11 ncbigene-ensembl_transcript +> 2024-11-30T22:22:52 ncbigene-ensembl_transcript ### Update TTL for ncbigene-flybase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-flybase_gene.ttl is older than output/tsv/ncbigene-flybase_gene.tsv ## Convert output/tsv/ncbigene-flybase_gene.tsv => output/ttl/ncbigene-flybase_gene.ttl -< 2024-11-23T03:10:11 ncbigene-flybase_gene +< 2024-11-30T22:22:52 ncbigene-flybase_gene togoid-config config/ncbigene-flybase_gene convert -> 2024-11-23T03:10:12 ncbigene-flybase_gene +> 2024-11-30T22:22:53 ncbigene-flybase_gene ### Update TTL for ncbigene-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-go.ttl is older than output/tsv/ncbigene-go.tsv ## Convert output/tsv/ncbigene-go.tsv => output/ttl/ncbigene-go.ttl -< 2024-11-23T03:10:12 ncbigene-go +< 2024-11-30T22:22:53 ncbigene-go togoid-config config/ncbigene-go convert -> 2024-11-23T03:27:38 ncbigene-go +> 2024-11-30T22:40:09 ncbigene-go ### Update TTL for ncbigene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-hgnc.ttl is older than output/tsv/ncbigene-hgnc.tsv ## Convert output/tsv/ncbigene-hgnc.tsv => output/ttl/ncbigene-hgnc.ttl -< 2024-11-23T03:27:38 ncbigene-hgnc +< 2024-11-30T22:40:09 ncbigene-hgnc togoid-config config/ncbigene-hgnc convert -> 2024-11-23T03:27:39 ncbigene-hgnc +> 2024-11-30T22:40:09 ncbigene-hgnc ### Update TTL for ncbigene-mgi_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-mgi_gene.ttl is older than output/tsv/ncbigene-mgi_gene.tsv ## Convert output/tsv/ncbigene-mgi_gene.tsv => output/ttl/ncbigene-mgi_gene.ttl -< 2024-11-23T03:27:39 ncbigene-mgi_gene +< 2024-11-30T22:40:09 ncbigene-mgi_gene togoid-config config/ncbigene-mgi_gene convert -> 2024-11-23T03:27:40 ncbigene-mgi_gene +> 2024-11-30T22:40:10 ncbigene-mgi_gene ### Update TTL for ncbigene-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-mirbase.ttl is older than output/tsv/ncbigene-mirbase.tsv ## Convert output/tsv/ncbigene-mirbase.tsv => output/ttl/ncbigene-mirbase.ttl -< 2024-11-23T03:27:40 ncbigene-mirbase +< 2024-11-30T22:40:10 ncbigene-mirbase togoid-config config/ncbigene-mirbase convert -> 2024-11-23T03:27:40 ncbigene-mirbase +> 2024-11-30T22:40:10 ncbigene-mirbase ### Update TTL for ncbigene-omim_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-omim_gene.ttl is older than output/tsv/ncbigene-omim_gene.tsv ## Convert output/tsv/ncbigene-omim_gene.tsv => output/ttl/ncbigene-omim_gene.ttl -< 2024-11-23T03:27:40 ncbigene-omim_gene +< 2024-11-30T22:40:10 ncbigene-omim_gene togoid-config config/ncbigene-omim_gene convert -> 2024-11-23T03:27:41 ncbigene-omim_gene +> 2024-11-30T22:40:11 ncbigene-omim_gene ### Update TTL for ncbigene-refseq_genomic if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_genomic.ttl is older than output/tsv/ncbigene-refseq_genomic.tsv ## Convert output/tsv/ncbigene-refseq_genomic.tsv => output/ttl/ncbigene-refseq_genomic.ttl -< 2024-11-23T03:27:41 ncbigene-refseq_genomic +< 2024-11-30T22:40:11 ncbigene-refseq_genomic togoid-config config/ncbigene-refseq_genomic convert -> 2024-11-23T03:27:43 ncbigene-refseq_genomic +> 2024-11-30T22:40:13 ncbigene-refseq_genomic ### Update TTL for ncbigene-refseq_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_protein.ttl is older than output/tsv/ncbigene-refseq_protein.tsv ## Convert output/tsv/ncbigene-refseq_protein.tsv => output/ttl/ncbigene-refseq_protein.ttl -< 2024-11-23T03:27:43 ncbigene-refseq_protein +< 2024-11-30T22:40:13 ncbigene-refseq_protein togoid-config config/ncbigene-refseq_protein convert -> 2024-11-23T03:41:06 ncbigene-refseq_protein +> 2024-11-30T22:53:52 ncbigene-refseq_protein ### Update TTL for ncbigene-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_rna.ttl is older than output/tsv/ncbigene-refseq_rna.tsv ## Convert output/tsv/ncbigene-refseq_rna.tsv => output/ttl/ncbigene-refseq_rna.ttl -< 2024-11-23T03:41:06 ncbigene-refseq_rna +< 2024-11-30T22:53:52 ncbigene-refseq_rna togoid-config config/ncbigene-refseq_rna convert -> 2024-11-23T03:52:28 ncbigene-refseq_rna +> 2024-11-30T23:05:18 ncbigene-refseq_rna ### Update TTL for ncbigene-rgd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-rgd.ttl is older than output/tsv/ncbigene-rgd.tsv ## Convert output/tsv/ncbigene-rgd.tsv => output/ttl/ncbigene-rgd.ttl -< 2024-11-23T03:52:28 ncbigene-rgd +< 2024-11-30T23:05:18 ncbigene-rgd togoid-config config/ncbigene-rgd convert -> 2024-11-23T03:52:29 ncbigene-rgd +> 2024-11-30T23:05:18 ncbigene-rgd ### Update TTL for ncbigene-sgd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-sgd.ttl is older than output/tsv/ncbigene-sgd.tsv ## Convert output/tsv/ncbigene-sgd.tsv => output/ttl/ncbigene-sgd.ttl -< 2024-11-23T03:52:29 ncbigene-sgd +< 2024-11-30T23:05:18 ncbigene-sgd togoid-config config/ncbigene-sgd convert -> 2024-11-23T03:52:30 ncbigene-sgd +> 2024-11-30T23:05:19 ncbigene-sgd ### Update TTL for ncbigene-tair if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-tair.ttl is older than output/tsv/ncbigene-tair.tsv ## Convert output/tsv/ncbigene-tair.tsv => output/ttl/ncbigene-tair.ttl -< 2024-11-23T03:52:30 ncbigene-tair +< 2024-11-30T23:05:19 ncbigene-tair togoid-config config/ncbigene-tair convert -> 2024-11-23T03:52:30 ncbigene-tair +> 2024-11-30T23:05:19 ncbigene-tair ### Update TTL for ncbigene-taxonomy if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-taxonomy.ttl is older than output/tsv/ncbigene-taxonomy.tsv ## Convert output/tsv/ncbigene-taxonomy.tsv => output/ttl/ncbigene-taxonomy.ttl -< 2024-11-23T03:52:30 ncbigene-taxonomy +< 2024-11-30T23:05:19 ncbigene-taxonomy togoid-config config/ncbigene-taxonomy convert -> 2024-11-23T04:01:12 ncbigene-taxonomy +> 2024-11-30T23:13:43 ncbigene-taxonomy ### Update TTL for ncbigene-vgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-vgnc.ttl is older than output/tsv/ncbigene-vgnc.tsv ## Convert output/tsv/ncbigene-vgnc.tsv => output/ttl/ncbigene-vgnc.ttl -< 2024-11-23T04:01:12 ncbigene-vgnc +< 2024-11-30T23:13:43 ncbigene-vgnc togoid-config config/ncbigene-vgnc convert -> 2024-11-23T04:01:14 ncbigene-vgnc +> 2024-11-30T23:13:44 ncbigene-vgnc ### Update TTL for ncbigene-wormbase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-wormbase_gene.ttl is older than output/tsv/ncbigene-wormbase_gene.tsv ## Convert output/tsv/ncbigene-wormbase_gene.tsv => output/ttl/ncbigene-wormbase_gene.ttl -< 2024-11-23T04:01:14 ncbigene-wormbase_gene +< 2024-11-30T23:13:44 ncbigene-wormbase_gene togoid-config config/ncbigene-wormbase_gene convert -> 2024-11-23T04:01:14 ncbigene-wormbase_gene +> 2024-11-30T23:13:45 ncbigene-wormbase_gene ### Update TTL for ncbigene-xenbase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-xenbase_gene.ttl is older than output/tsv/ncbigene-xenbase_gene.tsv ## Convert output/tsv/ncbigene-xenbase_gene.tsv => output/ttl/ncbigene-xenbase_gene.ttl -< 2024-11-23T04:01:14 ncbigene-xenbase_gene +< 2024-11-30T23:13:45 ncbigene-xenbase_gene togoid-config config/ncbigene-xenbase_gene convert -> 2024-11-23T04:01:15 ncbigene-xenbase_gene +> 2024-11-30T23:13:45 ncbigene-xenbase_gene ### Update TTL for ncbigene-zfin_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-zfin_gene.ttl is older than output/tsv/ncbigene-zfin_gene.tsv ## Convert output/tsv/ncbigene-zfin_gene.tsv => output/ttl/ncbigene-zfin_gene.ttl -< 2024-11-23T04:01:15 ncbigene-zfin_gene +< 2024-11-30T23:13:45 ncbigene-zfin_gene togoid-config config/ncbigene-zfin_gene convert -> 2024-11-23T04:01:15 ncbigene-zfin_gene +> 2024-11-30T23:13:46 ncbigene-zfin_gene ### Update TTL for ncit_disease-ncit_tissue if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncit_disease-ncit_tissue.ttl is older than output/tsv/ncit_disease-ncit_tissue.tsv ## Convert output/tsv/ncit_disease-ncit_tissue.tsv => output/ttl/ncit_disease-ncit_tissue.ttl -< 2024-11-23T04:01:15 ncit_disease-ncit_tissue +< 2024-11-30T23:13:46 ncit_disease-ncit_tissue togoid-config config/ncit_disease-ncit_tissue convert -> 2024-11-23T04:01:16 ncit_disease-ncit_tissue +> 2024-11-30T23:13:46 ncit_disease-ncit_tissue ### Update TTL for oma_protein-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/oma_protein-ensembl_gene.ttl is newer than output/tsv/oma_protein-ensembl_gene.tsv # => Preserving output/ttl/oma_protein-ensembl_gene.ttl @@ -6489,234 +6637,237 @@ togoid-config config/ncit_disease-ncit_tissue convert ### Update TTL for orphanet_gene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-ensembl_gene.ttl is older than output/tsv/orphanet_gene-ensembl_gene.tsv ## Convert output/tsv/orphanet_gene-ensembl_gene.tsv => output/ttl/orphanet_gene-ensembl_gene.ttl -< 2024-11-23T04:01:16 orphanet_gene-ensembl_gene +< 2024-11-30T23:13:46 orphanet_gene-ensembl_gene togoid-config config/orphanet_gene-ensembl_gene convert -> 2024-11-23T04:01:16 orphanet_gene-ensembl_gene +> 2024-11-30T23:13:47 orphanet_gene-ensembl_gene ### Update TTL for orphanet_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-hgnc.ttl is older than output/tsv/orphanet_gene-hgnc.tsv ## Convert output/tsv/orphanet_gene-hgnc.tsv => output/ttl/orphanet_gene-hgnc.ttl -< 2024-11-23T04:01:16 orphanet_gene-hgnc +< 2024-11-30T23:13:47 orphanet_gene-hgnc togoid-config config/orphanet_gene-hgnc convert -> 2024-11-23T04:01:16 orphanet_gene-hgnc +> 2024-11-30T23:13:47 orphanet_gene-hgnc ### Update TTL for orphanet_gene-omim_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-omim_gene.ttl is older than output/tsv/orphanet_gene-omim_gene.tsv ## Convert output/tsv/orphanet_gene-omim_gene.tsv => output/ttl/orphanet_gene-omim_gene.ttl -< 2024-11-23T04:01:16 orphanet_gene-omim_gene +< 2024-11-30T23:13:47 orphanet_gene-omim_gene togoid-config config/orphanet_gene-omim_gene convert -> 2024-11-23T04:01:17 orphanet_gene-omim_gene +> 2024-11-30T23:13:47 orphanet_gene-omim_gene ### Update TTL for orphanet_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-uniprot.ttl is older than output/tsv/orphanet_gene-uniprot.tsv ## Convert output/tsv/orphanet_gene-uniprot.tsv => output/ttl/orphanet_gene-uniprot.ttl -< 2024-11-23T04:01:17 orphanet_gene-uniprot +< 2024-11-30T23:13:47 orphanet_gene-uniprot togoid-config config/orphanet_gene-uniprot convert -> 2024-11-23T04:01:17 orphanet_gene-uniprot +> 2024-11-30T23:13:48 orphanet_gene-uniprot ### Update TTL for orphanet_phenotype-meddra if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-meddra.ttl is older than output/tsv/orphanet_phenotype-meddra.tsv ## Convert output/tsv/orphanet_phenotype-meddra.tsv => output/ttl/orphanet_phenotype-meddra.ttl -< 2024-11-23T04:01:17 orphanet_phenotype-meddra +< 2024-11-30T23:13:48 orphanet_phenotype-meddra togoid-config config/orphanet_phenotype-meddra convert -> 2024-11-23T04:01:17 orphanet_phenotype-meddra +> 2024-11-30T23:13:48 orphanet_phenotype-meddra ### Update TTL for orphanet_phenotype-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-mesh.ttl is older than output/tsv/orphanet_phenotype-mesh.tsv ## Convert output/tsv/orphanet_phenotype-mesh.tsv => output/ttl/orphanet_phenotype-mesh.ttl -< 2024-11-23T04:01:17 orphanet_phenotype-mesh +< 2024-11-30T23:13:48 orphanet_phenotype-mesh togoid-config config/orphanet_phenotype-mesh convert -> 2024-11-23T04:01:17 orphanet_phenotype-mesh +> 2024-11-30T23:13:48 orphanet_phenotype-mesh ### Update TTL for orphanet_phenotype-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-omim_phenotype.ttl is older than output/tsv/orphanet_phenotype-omim_phenotype.tsv ## Convert output/tsv/orphanet_phenotype-omim_phenotype.tsv => output/ttl/orphanet_phenotype-omim_phenotype.ttl -< 2024-11-23T04:01:17 orphanet_phenotype-omim_phenotype +< 2024-11-30T23:13:48 orphanet_phenotype-omim_phenotype togoid-config config/orphanet_phenotype-omim_phenotype convert -> 2024-11-23T04:01:17 orphanet_phenotype-omim_phenotype +> 2024-11-30T23:13:48 orphanet_phenotype-omim_phenotype ### Update TTL for orphanet_phenotype-orphanet_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-orphanet_gene.ttl is older than output/tsv/orphanet_phenotype-orphanet_gene.tsv ## Convert output/tsv/orphanet_phenotype-orphanet_gene.tsv => output/ttl/orphanet_phenotype-orphanet_gene.ttl -< 2024-11-23T04:01:17 orphanet_phenotype-orphanet_gene +< 2024-11-30T23:13:48 orphanet_phenotype-orphanet_gene togoid-config config/orphanet_phenotype-orphanet_gene convert -> 2024-11-23T04:01:18 orphanet_phenotype-orphanet_gene +> 2024-11-30T23:13:49 orphanet_phenotype-orphanet_gene ### Update TTL for pdb-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-go.ttl is older than output/tsv/pdb-go.tsv ## Convert output/tsv/pdb-go.tsv => output/ttl/pdb-go.ttl -< 2024-11-23T04:01:18 pdb-go +< 2024-11-30T23:13:49 pdb-go togoid-config config/pdb-go convert -> 2024-11-23T04:01:31 pdb-go +> 2024-11-30T23:14:00 pdb-go ### Update TTL for pdb-interpro if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-interpro.ttl is older than output/tsv/pdb-interpro.tsv ## Convert output/tsv/pdb-interpro.tsv => output/ttl/pdb-interpro.ttl -< 2024-11-23T04:01:31 pdb-interpro +< 2024-11-30T23:14:00 pdb-interpro togoid-config config/pdb-interpro convert -> 2024-11-23T04:01:37 pdb-interpro +> 2024-11-30T23:14:06 pdb-interpro ### Update TTL for pdb-pdb_ccd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-pdb_ccd.ttl is older than output/tsv/pdb-pdb_ccd.tsv ## Convert output/tsv/pdb-pdb_ccd.tsv => output/ttl/pdb-pdb_ccd.ttl -< 2024-11-23T04:01:37 pdb-pdb_ccd +< 2024-11-30T23:14:06 pdb-pdb_ccd togoid-config config/pdb-pdb_ccd convert -> 2024-11-23T04:01:42 pdb-pdb_ccd +> 2024-11-30T23:14:10 pdb-pdb_ccd ### Update TTL for pdb-pfam if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-pfam.ttl is older than output/tsv/pdb-pfam.tsv ## Convert output/tsv/pdb-pfam.tsv => output/ttl/pdb-pfam.ttl -< 2024-11-23T04:01:42 pdb-pfam +< 2024-11-30T23:14:10 pdb-pfam togoid-config config/pdb-pfam convert -> 2024-11-23T04:01:44 pdb-pfam +> 2024-11-30T23:14:12 pdb-pfam ### Update TTL for pdb-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-uniprot.ttl is older than output/tsv/pdb-uniprot.tsv ## Convert output/tsv/pdb-uniprot.tsv => output/ttl/pdb-uniprot.ttl -< 2024-11-23T04:01:44 pdb-uniprot +< 2024-11-30T23:14:12 pdb-uniprot togoid-config config/pdb-uniprot convert -> 2024-11-23T04:01:47 pdb-uniprot +> 2024-11-30T23:14:15 pdb-uniprot ### Update TTL for pmc-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pmc-pubmed.ttl is older than output/tsv/pmc-pubmed.tsv ## Convert output/tsv/pmc-pubmed.tsv => output/ttl/pmc-pubmed.ttl -< 2024-11-23T04:01:47 pmc-pubmed +< 2024-11-30T23:14:15 pmc-pubmed togoid-config config/pmc-pubmed convert -> 2024-11-23T04:02:59 pmc-pubmed -### Update TTL for prosite-prosite_prorule if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/prosite-prosite_prorule.ttl is newer than output/tsv/prosite-prosite_prorule.tsv -# => Preserving output/ttl/prosite-prosite_prorule.ttl +> 2024-11-30T23:15:23 pmc-pubmed +### Update TTL for prosite-prosite_prorule if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/prosite-prosite_prorule.ttl is older than output/tsv/prosite-prosite_prorule.tsv +## Convert output/tsv/prosite-prosite_prorule.tsv => output/ttl/prosite-prosite_prorule.ttl +< 2024-11-30T23:15:23 prosite-prosite_prorule +togoid-config config/prosite-prosite_prorule convert +> 2024-11-30T23:15:23 prosite-prosite_prorule ### Update TTL for pubchem_compound-atc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-atc.ttl is older than output/tsv/pubchem_compound-atc.tsv ## Convert output/tsv/pubchem_compound-atc.tsv => output/ttl/pubchem_compound-atc.ttl -< 2024-11-23T04:02:59 pubchem_compound-atc +< 2024-11-30T23:15:23 pubchem_compound-atc togoid-config config/pubchem_compound-atc convert -> 2024-11-23T04:03:00 pubchem_compound-atc +> 2024-11-30T23:15:23 pubchem_compound-atc ### Update TTL for pubchem_compound-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-chebi.ttl is older than output/tsv/pubchem_compound-chebi.tsv ## Convert output/tsv/pubchem_compound-chebi.tsv => output/ttl/pubchem_compound-chebi.ttl -< 2024-11-23T04:03:00 pubchem_compound-chebi +< 2024-11-30T23:15:23 pubchem_compound-chebi togoid-config config/pubchem_compound-chebi convert -> 2024-11-23T04:03:01 pubchem_compound-chebi +> 2024-11-30T23:15:25 pubchem_compound-chebi ### Update TTL for pubchem_compound-chembl_compound if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-chembl_compound.ttl is older than output/tsv/pubchem_compound-chembl_compound.tsv ## Convert output/tsv/pubchem_compound-chembl_compound.tsv => output/ttl/pubchem_compound-chembl_compound.ttl -< 2024-11-23T04:03:01 pubchem_compound-chembl_compound +< 2024-11-30T23:15:25 pubchem_compound-chembl_compound togoid-config config/pubchem_compound-chembl_compound convert -> 2024-11-23T04:03:21 pubchem_compound-chembl_compound +> 2024-11-30T23:15:44 pubchem_compound-chembl_compound ### Update TTL for pubchem_compound-drugbank if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-drugbank.ttl is older than output/tsv/pubchem_compound-drugbank.tsv ## Convert output/tsv/pubchem_compound-drugbank.tsv => output/ttl/pubchem_compound-drugbank.ttl -< 2024-11-23T04:03:21 pubchem_compound-drugbank +< 2024-11-30T23:15:44 pubchem_compound-drugbank togoid-config config/pubchem_compound-drugbank convert -> 2024-11-23T04:03:22 pubchem_compound-drugbank +> 2024-11-30T23:15:45 pubchem_compound-drugbank ### Update TTL for pubchem_compound-glytoucan if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-glytoucan.ttl is older than output/tsv/pubchem_compound-glytoucan.tsv ## Convert output/tsv/pubchem_compound-glytoucan.tsv => output/ttl/pubchem_compound-glytoucan.ttl -< 2024-11-23T04:03:22 pubchem_compound-glytoucan +< 2024-11-30T23:15:45 pubchem_compound-glytoucan togoid-config config/pubchem_compound-glytoucan convert -> 2024-11-23T04:03:22 pubchem_compound-glytoucan +> 2024-11-30T23:15:45 pubchem_compound-glytoucan ### Update TTL for pubchem_compound-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-inchi_key.ttl is older than output/tsv/pubchem_compound-inchi_key.tsv ## Convert output/tsv/pubchem_compound-inchi_key.tsv => output/ttl/pubchem_compound-inchi_key.ttl -< 2024-11-23T04:03:22 pubchem_compound-inchi_key +< 2024-11-30T23:15:45 pubchem_compound-inchi_key togoid-config config/pubchem_compound-inchi_key convert -> 2024-11-23T04:44:55 pubchem_compound-inchi_key +> 2024-11-30T23:58:28 pubchem_compound-inchi_key ### Update TTL for pubchem_pathway-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-ncbigene.ttl is older than output/tsv/pubchem_pathway-ncbigene.tsv ## Convert output/tsv/pubchem_pathway-ncbigene.tsv => output/ttl/pubchem_pathway-ncbigene.ttl -< 2024-11-23T04:44:55 pubchem_pathway-ncbigene +< 2024-11-30T23:58:28 pubchem_pathway-ncbigene togoid-config config/pubchem_pathway-ncbigene convert -> 2024-11-23T04:44:57 pubchem_pathway-ncbigene +> 2024-11-30T23:58:28 pubchem_pathway-ncbigene ### Update TTL for pubchem_pathway-pathbank if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-pathbank.ttl is older than output/tsv/pubchem_pathway-pathbank.tsv ## Convert output/tsv/pubchem_pathway-pathbank.tsv => output/ttl/pubchem_pathway-pathbank.ttl -< 2024-11-23T04:44:57 pubchem_pathway-pathbank +< 2024-11-30T23:58:28 pubchem_pathway-pathbank togoid-config config/pubchem_pathway-pathbank convert -> 2024-11-23T04:44:58 pubchem_pathway-pathbank +> 2024-11-30T23:58:29 pubchem_pathway-pathbank ### Update TTL for pubchem_pathway-pubchem_compound if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-pubchem_compound.ttl is older than output/tsv/pubchem_pathway-pubchem_compound.tsv ## Convert output/tsv/pubchem_pathway-pubchem_compound.tsv => output/ttl/pubchem_pathway-pubchem_compound.ttl -< 2024-11-23T04:44:58 pubchem_pathway-pubchem_compound +< 2024-11-30T23:58:29 pubchem_pathway-pubchem_compound togoid-config config/pubchem_pathway-pubchem_compound convert -> 2024-11-23T04:45:08 pubchem_pathway-pubchem_compound +> 2024-11-30T23:58:38 pubchem_pathway-pubchem_compound ### Update TTL for pubchem_pathway-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-reactome_pathway.ttl is older than output/tsv/pubchem_pathway-reactome_pathway.tsv ## Convert output/tsv/pubchem_pathway-reactome_pathway.tsv => output/ttl/pubchem_pathway-reactome_pathway.ttl -< 2024-11-23T04:45:08 pubchem_pathway-reactome_pathway +< 2024-11-30T23:58:38 pubchem_pathway-reactome_pathway togoid-config config/pubchem_pathway-reactome_pathway convert -> 2024-11-23T04:45:08 pubchem_pathway-reactome_pathway +> 2024-11-30T23:58:38 pubchem_pathway-reactome_pathway ### Update TTL for pubchem_pathway-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-uniprot.ttl is older than output/tsv/pubchem_pathway-uniprot.tsv ## Convert output/tsv/pubchem_pathway-uniprot.tsv => output/ttl/pubchem_pathway-uniprot.ttl -< 2024-11-23T04:45:08 pubchem_pathway-uniprot +< 2024-11-30T23:58:38 pubchem_pathway-uniprot togoid-config config/pubchem_pathway-uniprot convert -> 2024-11-23T04:45:13 pubchem_pathway-uniprot +> 2024-11-30T23:58:43 pubchem_pathway-uniprot ### Update TTL for pubchem_pathway-wikipathways if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-wikipathways.ttl is older than output/tsv/pubchem_pathway-wikipathways.tsv ## Convert output/tsv/pubchem_pathway-wikipathways.tsv => output/ttl/pubchem_pathway-wikipathways.ttl -< 2024-11-23T04:45:13 pubchem_pathway-wikipathways +< 2024-11-30T23:58:43 pubchem_pathway-wikipathways togoid-config config/pubchem_pathway-wikipathways convert -> 2024-11-23T04:45:13 pubchem_pathway-wikipathways +> 2024-11-30T23:58:43 pubchem_pathway-wikipathways ### Update TTL for reactome_pathway-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-chebi.ttl is older than output/tsv/reactome_pathway-chebi.tsv ## Convert output/tsv/reactome_pathway-chebi.tsv => output/ttl/reactome_pathway-chebi.ttl -< 2024-11-23T04:45:13 reactome_pathway-chebi +< 2024-11-30T23:58:43 reactome_pathway-chebi togoid-config config/reactome_pathway-chebi convert -> 2024-11-23T04:45:15 reactome_pathway-chebi +> 2024-11-30T23:58:46 reactome_pathway-chebi ### Update TTL for reactome_pathway-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-go.ttl is older than output/tsv/reactome_pathway-go.tsv ## Convert output/tsv/reactome_pathway-go.tsv => output/ttl/reactome_pathway-go.ttl -< 2024-11-23T04:45:15 reactome_pathway-go +< 2024-11-30T23:58:46 reactome_pathway-go togoid-config config/reactome_pathway-go convert -> 2024-11-23T04:45:16 reactome_pathway-go +> 2024-11-30T23:58:46 reactome_pathway-go ### Update TTL for reactome_pathway-iuphar_ligand if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-iuphar_ligand.ttl is older than output/tsv/reactome_pathway-iuphar_ligand.tsv ## Convert output/tsv/reactome_pathway-iuphar_ligand.tsv => output/ttl/reactome_pathway-iuphar_ligand.ttl -< 2024-11-23T04:45:16 reactome_pathway-iuphar_ligand +< 2024-11-30T23:58:46 reactome_pathway-iuphar_ligand togoid-config config/reactome_pathway-iuphar_ligand convert -> 2024-11-23T04:45:16 reactome_pathway-iuphar_ligand +> 2024-11-30T23:58:47 reactome_pathway-iuphar_ligand ### Update TTL for reactome_pathway-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-mirbase.ttl is older than output/tsv/reactome_pathway-mirbase.tsv ## Convert output/tsv/reactome_pathway-mirbase.tsv => output/ttl/reactome_pathway-mirbase.ttl -< 2024-11-23T04:45:16 reactome_pathway-mirbase +< 2024-11-30T23:58:47 reactome_pathway-mirbase togoid-config config/reactome_pathway-mirbase convert -> 2024-11-23T04:45:17 reactome_pathway-mirbase +> 2024-11-30T23:58:47 reactome_pathway-mirbase ### Update TTL for reactome_pathway-reactome_reaction if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-reactome_reaction.ttl is older than output/tsv/reactome_pathway-reactome_reaction.tsv ## Convert output/tsv/reactome_pathway-reactome_reaction.tsv => output/ttl/reactome_pathway-reactome_reaction.ttl -< 2024-11-23T04:45:17 reactome_pathway-reactome_reaction +< 2024-11-30T23:58:47 reactome_pathway-reactome_reaction togoid-config config/reactome_pathway-reactome_reaction convert -> 2024-11-23T04:45:21 reactome_pathway-reactome_reaction +> 2024-11-30T23:58:50 reactome_pathway-reactome_reaction ### Update TTL for reactome_pathway-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-uniprot.ttl is older than output/tsv/reactome_pathway-uniprot.tsv ## Convert output/tsv/reactome_pathway-uniprot.tsv => output/ttl/reactome_pathway-uniprot.ttl -< 2024-11-23T04:45:21 reactome_pathway-uniprot +< 2024-11-30T23:58:50 reactome_pathway-uniprot togoid-config config/reactome_pathway-uniprot convert -> 2024-11-23T04:45:28 reactome_pathway-uniprot +> 2024-11-30T23:58:57 reactome_pathway-uniprot ### Update TTL for reactome_reaction-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-chebi.ttl is older than output/tsv/reactome_reaction-chebi.tsv ## Convert output/tsv/reactome_reaction-chebi.tsv => output/ttl/reactome_reaction-chebi.ttl -< 2024-11-23T04:45:28 reactome_reaction-chebi +< 2024-11-30T23:58:57 reactome_reaction-chebi togoid-config config/reactome_reaction-chebi convert -> 2024-11-23T04:45:30 reactome_reaction-chebi +> 2024-11-30T23:58:59 reactome_reaction-chebi ### Update TTL for reactome_reaction-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-go.ttl is older than output/tsv/reactome_reaction-go.tsv ## Convert output/tsv/reactome_reaction-go.tsv => output/ttl/reactome_reaction-go.ttl -< 2024-11-23T04:45:30 reactome_reaction-go +< 2024-11-30T23:58:59 reactome_reaction-go togoid-config config/reactome_reaction-go convert -> 2024-11-23T04:45:30 reactome_reaction-go +> 2024-11-30T23:58:59 reactome_reaction-go ### Update TTL for reactome_reaction-iuphar_ligand if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-iuphar_ligand.ttl is older than output/tsv/reactome_reaction-iuphar_ligand.tsv ## Convert output/tsv/reactome_reaction-iuphar_ligand.tsv => output/ttl/reactome_reaction-iuphar_ligand.ttl -< 2024-11-23T04:45:30 reactome_reaction-iuphar_ligand +< 2024-11-30T23:58:59 reactome_reaction-iuphar_ligand togoid-config config/reactome_reaction-iuphar_ligand convert -> 2024-11-23T04:45:30 reactome_reaction-iuphar_ligand +> 2024-11-30T23:58:59 reactome_reaction-iuphar_ligand ### Update TTL for reactome_reaction-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-mirbase.ttl is older than output/tsv/reactome_reaction-mirbase.tsv ## Convert output/tsv/reactome_reaction-mirbase.tsv => output/ttl/reactome_reaction-mirbase.ttl -< 2024-11-23T04:45:30 reactome_reaction-mirbase +< 2024-11-30T23:58:59 reactome_reaction-mirbase togoid-config config/reactome_reaction-mirbase convert -> 2024-11-23T04:45:31 reactome_reaction-mirbase +> 2024-11-30T23:59:00 reactome_reaction-mirbase ### Update TTL for reactome_reaction-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-uniprot.ttl is older than output/tsv/reactome_reaction-uniprot.tsv ## Convert output/tsv/reactome_reaction-uniprot.tsv => output/ttl/reactome_reaction-uniprot.ttl -< 2024-11-23T04:45:31 reactome_reaction-uniprot +< 2024-11-30T23:59:00 reactome_reaction-uniprot togoid-config config/reactome_reaction-uniprot convert -> 2024-11-23T04:45:36 reactome_reaction-uniprot +> 2024-11-30T23:59:05 reactome_reaction-uniprot ### Update TTL for refseq_protein-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/refseq_protein-uniprot.ttl is older than output/tsv/refseq_protein-uniprot.tsv ## Convert output/tsv/refseq_protein-uniprot.tsv => output/ttl/refseq_protein-uniprot.ttl -< 2024-11-23T04:45:36 refseq_protein-uniprot +< 2024-11-30T23:59:05 refseq_protein-uniprot togoid-config config/refseq_protein-uniprot convert -> 2024-11-23T05:35:22 refseq_protein-uniprot +> 2024-12-01T00:47:34 refseq_protein-uniprot ### Update TTL for refseq_rna-dbsnp if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/refseq_rna-dbsnp.ttl is newer than output/tsv/refseq_rna-dbsnp.tsv # => Preserving output/ttl/refseq_rna-dbsnp.ttl @@ -6738,318 +6889,396 @@ togoid-config config/refseq_protein-uniprot convert ### Update TTL for refseq_rna-taxonomy if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/refseq_rna-taxonomy.ttl is newer than output/tsv/refseq_rna-taxonomy.tsv # => Preserving output/ttl/refseq_rna-taxonomy.ttl -### Update TTL for rhea-chebi if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/rhea-chebi.ttl is newer than output/tsv/rhea-chebi.tsv -# => Preserving output/ttl/rhea-chebi.ttl -### Update TTL for rhea-ec if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/rhea-ec.ttl is newer than output/tsv/rhea-ec.tsv -# => Preserving output/ttl/rhea-ec.ttl -### Update TTL for rhea-go if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/rhea-go.ttl is newer than output/tsv/rhea-go.tsv -# => Preserving output/ttl/rhea-go.ttl -### Update TTL for rhea-pubmed if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/rhea-pubmed.ttl is newer than output/tsv/rhea-pubmed.tsv -# => Preserving output/ttl/rhea-pubmed.ttl -### Update TTL for rhea-reactome_reaction if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/rhea-reactome_reaction.ttl is newer than output/tsv/rhea-reactome_reaction.tsv -# => Preserving output/ttl/rhea-reactome_reaction.ttl -### Update TTL for rhea-uniprot if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/rhea-uniprot.ttl is newer than output/tsv/rhea-uniprot.tsv -# => Preserving output/ttl/rhea-uniprot.ttl +### Update TTL for rhea-chebi if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/rhea-chebi.ttl is older than output/tsv/rhea-chebi.tsv +## Convert output/tsv/rhea-chebi.tsv => output/ttl/rhea-chebi.ttl +< 2024-12-01T00:47:34 rhea-chebi +togoid-config config/rhea-chebi convert +> 2024-12-01T00:47:36 rhea-chebi +### Update TTL for rhea-ec if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/rhea-ec.ttl is older than output/tsv/rhea-ec.tsv +## Convert output/tsv/rhea-ec.tsv => output/ttl/rhea-ec.ttl +< 2024-12-01T00:47:36 rhea-ec +togoid-config config/rhea-ec convert +> 2024-12-01T00:47:36 rhea-ec +### Update TTL for rhea-go if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/rhea-go.ttl is older than output/tsv/rhea-go.tsv +## Convert output/tsv/rhea-go.tsv => output/ttl/rhea-go.ttl +< 2024-12-01T00:47:36 rhea-go +togoid-config config/rhea-go convert +> 2024-12-01T00:47:36 rhea-go +### Update TTL for rhea-pubmed if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/rhea-pubmed.ttl is older than output/tsv/rhea-pubmed.tsv +## Convert output/tsv/rhea-pubmed.tsv => output/ttl/rhea-pubmed.ttl +< 2024-12-01T00:47:36 rhea-pubmed +togoid-config config/rhea-pubmed convert +> 2024-12-01T00:47:37 rhea-pubmed +### Update TTL for rhea-reactome_reaction if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/rhea-reactome_reaction.ttl is older than output/tsv/rhea-reactome_reaction.tsv +## Convert output/tsv/rhea-reactome_reaction.tsv => output/ttl/rhea-reactome_reaction.ttl +< 2024-12-01T00:47:37 rhea-reactome_reaction +togoid-config config/rhea-reactome_reaction convert +> 2024-12-01T00:47:38 rhea-reactome_reaction +### Update TTL for rhea-uniprot if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/rhea-uniprot.ttl is older than output/tsv/rhea-uniprot.tsv +## Convert output/tsv/rhea-uniprot.tsv => output/ttl/rhea-uniprot.ttl +< 2024-12-01T00:47:38 rhea-uniprot +togoid-config config/rhea-uniprot convert +> 2024-12-01T00:54:02 rhea-uniprot ### Update TTL for sra_accession-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-bioproject.ttl is older than output/tsv/sra_accession-bioproject.tsv ## Convert output/tsv/sra_accession-bioproject.tsv => output/ttl/sra_accession-bioproject.ttl -< 2024-11-23T05:35:22 sra_accession-bioproject +< 2024-12-01T00:54:02 sra_accession-bioproject togoid-config config/sra_accession-bioproject convert -> 2024-11-23T05:35:28 sra_accession-bioproject +> 2024-12-01T00:54:07 sra_accession-bioproject ### Update TTL for sra_accession-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-biosample.ttl is older than output/tsv/sra_accession-biosample.tsv ## Convert output/tsv/sra_accession-biosample.tsv => output/ttl/sra_accession-biosample.ttl -< 2024-11-23T05:35:28 sra_accession-biosample +< 2024-12-01T00:54:07 sra_accession-biosample togoid-config config/sra_accession-biosample convert -> 2024-11-23T05:40:57 sra_accession-biosample +> 2024-12-01T01:00:10 sra_accession-biosample ### Update TTL for sra_accession-sra_analysis if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_analysis.ttl is older than output/tsv/sra_accession-sra_analysis.tsv ## Convert output/tsv/sra_accession-sra_analysis.tsv => output/ttl/sra_accession-sra_analysis.ttl -< 2024-11-23T05:40:57 sra_accession-sra_analysis +< 2024-12-01T01:00:10 sra_accession-sra_analysis togoid-config config/sra_accession-sra_analysis convert -> 2024-11-23T05:40:59 sra_accession-sra_analysis +> 2024-12-01T01:00:13 sra_accession-sra_analysis ### Update TTL for sra_accession-sra_experiment if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_experiment.ttl is older than output/tsv/sra_accession-sra_experiment.tsv ## Convert output/tsv/sra_accession-sra_experiment.tsv => output/ttl/sra_accession-sra_experiment.ttl -< 2024-11-23T05:40:59 sra_accession-sra_experiment +< 2024-12-01T01:00:13 sra_accession-sra_experiment togoid-config config/sra_accession-sra_experiment convert -> 2024-11-23T05:47:18 sra_accession-sra_experiment +> 2024-12-01T01:07:12 sra_accession-sra_experiment ### Update TTL for sra_accession-sra_project if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_project.ttl is older than output/tsv/sra_accession-sra_project.tsv ## Convert output/tsv/sra_accession-sra_project.tsv => output/ttl/sra_accession-sra_project.ttl -< 2024-11-23T05:47:18 sra_accession-sra_project +< 2024-12-01T01:07:12 sra_accession-sra_project togoid-config config/sra_accession-sra_project convert -> 2024-11-23T05:47:23 sra_accession-sra_project +> 2024-12-01T01:07:17 sra_accession-sra_project ### Update TTL for sra_accession-sra_run if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_run.ttl is older than output/tsv/sra_accession-sra_run.tsv ## Convert output/tsv/sra_accession-sra_run.tsv => output/ttl/sra_accession-sra_run.ttl -< 2024-11-23T05:47:23 sra_accession-sra_run +< 2024-12-01T01:07:17 sra_accession-sra_run togoid-config config/sra_accession-sra_run convert -> 2024-11-23T05:53:38 sra_accession-sra_run +> 2024-12-01T01:13:48 sra_accession-sra_run ### Update TTL for sra_accession-sra_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_sample.ttl is older than output/tsv/sra_accession-sra_sample.tsv ## Convert output/tsv/sra_accession-sra_sample.tsv => output/ttl/sra_accession-sra_sample.ttl -< 2024-11-23T05:53:38 sra_accession-sra_sample +< 2024-12-01T01:13:49 sra_accession-sra_sample togoid-config config/sra_accession-sra_sample convert -> 2024-11-23T05:58:35 sra_accession-sra_sample +> 2024-12-01T01:18:43 sra_accession-sra_sample ### Update TTL for sra_experiment-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-bioproject.ttl is older than output/tsv/sra_experiment-bioproject.tsv ## Convert output/tsv/sra_experiment-bioproject.tsv => output/ttl/sra_experiment-bioproject.ttl -< 2024-11-23T05:58:35 sra_experiment-bioproject +< 2024-12-01T01:18:43 sra_experiment-bioproject togoid-config config/sra_experiment-bioproject convert -> 2024-11-23T06:04:01 sra_experiment-bioproject +> 2024-12-01T01:23:58 sra_experiment-bioproject ### Update TTL for sra_experiment-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-biosample.ttl is older than output/tsv/sra_experiment-biosample.tsv ## Convert output/tsv/sra_experiment-biosample.tsv => output/ttl/sra_experiment-biosample.ttl -< 2024-11-23T06:04:01 sra_experiment-biosample +< 2024-12-01T01:23:58 sra_experiment-biosample togoid-config config/sra_experiment-biosample convert -> 2024-11-23T06:09:18 sra_experiment-biosample +> 2024-12-01T01:29:01 sra_experiment-biosample ### Update TTL for sra_experiment-sra_project if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-sra_project.ttl is older than output/tsv/sra_experiment-sra_project.tsv ## Convert output/tsv/sra_experiment-sra_project.tsv => output/ttl/sra_experiment-sra_project.ttl -< 2024-11-23T06:09:18 sra_experiment-sra_project +< 2024-12-01T01:29:01 sra_experiment-sra_project togoid-config config/sra_experiment-sra_project convert -> 2024-11-23T06:14:39 sra_experiment-sra_project +> 2024-12-01T01:34:28 sra_experiment-sra_project ### Update TTL for sra_experiment-sra_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-sra_sample.ttl is older than output/tsv/sra_experiment-sra_sample.tsv ## Convert output/tsv/sra_experiment-sra_sample.tsv => output/ttl/sra_experiment-sra_sample.ttl -< 2024-11-23T06:14:39 sra_experiment-sra_sample +< 2024-12-01T01:34:28 sra_experiment-sra_sample togoid-config config/sra_experiment-sra_sample convert -> 2024-11-23T06:20:15 sra_experiment-sra_sample +> 2024-12-01T01:39:56 sra_experiment-sra_sample ### Update TTL for sra_project-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_project-bioproject.ttl is older than output/tsv/sra_project-bioproject.tsv ## Convert output/tsv/sra_project-bioproject.tsv => output/ttl/sra_project-bioproject.ttl -< 2024-11-23T06:20:15 sra_project-bioproject +< 2024-12-01T01:39:56 sra_project-bioproject togoid-config config/sra_project-bioproject convert -> 2024-11-23T06:20:19 sra_project-bioproject +> 2024-12-01T01:40:01 sra_project-bioproject ### Update TTL for sra_run-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-bioproject.ttl is older than output/tsv/sra_run-bioproject.tsv ## Convert output/tsv/sra_run-bioproject.tsv => output/ttl/sra_run-bioproject.ttl -< 2024-11-23T06:20:19 sra_run-bioproject +< 2024-12-01T01:40:01 sra_run-bioproject togoid-config config/sra_run-bioproject convert -> 2024-11-23T06:25:10 sra_run-bioproject +> 2024-12-01T01:45:25 sra_run-bioproject ### Update TTL for sra_run-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-biosample.ttl is older than output/tsv/sra_run-biosample.tsv ## Convert output/tsv/sra_run-biosample.tsv => output/ttl/sra_run-biosample.ttl -< 2024-11-23T06:25:10 sra_run-biosample +< 2024-12-01T01:45:25 sra_run-biosample togoid-config config/sra_run-biosample convert -> 2024-11-23T06:30:23 sra_run-biosample +> 2024-12-01T01:50:52 sra_run-biosample ### Update TTL for sra_run-sra_experiment if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-sra_experiment.ttl is older than output/tsv/sra_run-sra_experiment.tsv ## Convert output/tsv/sra_run-sra_experiment.tsv => output/ttl/sra_run-sra_experiment.ttl -< 2024-11-23T06:30:23 sra_run-sra_experiment +< 2024-12-01T01:50:52 sra_run-sra_experiment togoid-config config/sra_run-sra_experiment convert -> 2024-11-23T06:36:20 sra_run-sra_experiment +> 2024-12-01T01:56:47 sra_run-sra_experiment ### Update TTL for sra_run-sra_project if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-sra_project.ttl is older than output/tsv/sra_run-sra_project.tsv ## Convert output/tsv/sra_run-sra_project.tsv => output/ttl/sra_run-sra_project.ttl -< 2024-11-23T06:36:20 sra_run-sra_project +< 2024-12-01T01:56:47 sra_run-sra_project togoid-config config/sra_run-sra_project convert -> 2024-11-23T06:41:04 sra_run-sra_project +> 2024-12-01T02:01:35 sra_run-sra_project ### Update TTL for sra_run-sra_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-sra_sample.ttl is older than output/tsv/sra_run-sra_sample.tsv ## Convert output/tsv/sra_run-sra_sample.tsv => output/ttl/sra_run-sra_sample.ttl -< 2024-11-23T06:41:04 sra_run-sra_sample +< 2024-12-01T02:01:35 sra_run-sra_sample togoid-config config/sra_run-sra_sample convert -> 2024-11-23T06:46:35 sra_run-sra_sample +> 2024-12-01T02:06:54 sra_run-sra_sample ### Update TTL for sra_sample-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_sample-biosample.ttl is older than output/tsv/sra_sample-biosample.tsv ## Convert output/tsv/sra_sample-biosample.tsv => output/ttl/sra_sample-biosample.ttl -< 2024-11-23T06:46:35 sra_sample-biosample +< 2024-12-01T02:06:54 sra_sample-biosample togoid-config config/sra_sample-biosample convert -> 2024-11-23T06:51:36 sra_sample-biosample +> 2024-12-01T02:11:58 sra_sample-biosample ### Update TTL for swisslipids-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-chebi.ttl is older than output/tsv/swisslipids-chebi.tsv ## Convert output/tsv/swisslipids-chebi.tsv => output/ttl/swisslipids-chebi.ttl -< 2024-11-23T06:51:36 swisslipids-chebi +< 2024-12-01T02:11:58 swisslipids-chebi togoid-config config/swisslipids-chebi convert -> 2024-11-23T06:51:37 swisslipids-chebi +> 2024-12-01T02:11:58 swisslipids-chebi ### Update TTL for swisslipids-hmdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-hmdb.ttl is older than output/tsv/swisslipids-hmdb.tsv ## Convert output/tsv/swisslipids-hmdb.tsv => output/ttl/swisslipids-hmdb.ttl -< 2024-11-23T06:51:37 swisslipids-hmdb +< 2024-12-01T02:11:58 swisslipids-hmdb togoid-config config/swisslipids-hmdb convert -> 2024-11-23T06:51:38 swisslipids-hmdb +> 2024-12-01T02:11:58 swisslipids-hmdb ### Update TTL for swisslipids-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-inchi_key.ttl is older than output/tsv/swisslipids-inchi_key.tsv ## Convert output/tsv/swisslipids-inchi_key.tsv => output/ttl/swisslipids-inchi_key.ttl -< 2024-11-23T06:51:38 swisslipids-inchi_key +< 2024-12-01T02:11:58 swisslipids-inchi_key togoid-config config/swisslipids-inchi_key convert -> 2024-11-23T06:51:48 swisslipids-inchi_key +> 2024-12-01T02:12:04 swisslipids-inchi_key ### Update TTL for taxonomy-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/taxonomy-pubmed.ttl is older than output/tsv/taxonomy-pubmed.tsv ## Convert output/tsv/taxonomy-pubmed.tsv => output/ttl/taxonomy-pubmed.ttl -< 2024-11-23T06:51:48 taxonomy-pubmed +< 2024-12-01T02:12:05 taxonomy-pubmed togoid-config config/taxonomy-pubmed convert -> 2024-11-23T06:51:49 taxonomy-pubmed +> 2024-12-01T02:12:05 taxonomy-pubmed ### Update TTL for togovar-clinvar if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-clinvar.ttl is older than output/tsv/togovar-clinvar.tsv ## Convert output/tsv/togovar-clinvar.tsv => output/ttl/togovar-clinvar.ttl -< 2024-11-23T06:51:49 togovar-clinvar +< 2024-12-01T02:12:05 togovar-clinvar togoid-config config/togovar-clinvar convert -> 2024-11-23T06:51:58 togovar-clinvar +> 2024-12-01T02:12:11 togovar-clinvar ### Update TTL for togovar-dbsnp if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-dbsnp.ttl is older than output/tsv/togovar-dbsnp.tsv ## Convert output/tsv/togovar-dbsnp.tsv => output/ttl/togovar-dbsnp.ttl -< 2024-11-23T06:51:58 togovar-dbsnp +< 2024-12-01T02:12:11 togovar-dbsnp togoid-config config/togovar-dbsnp convert -> 2024-11-23T07:10:59 togovar-dbsnp +> 2024-12-01T02:24:16 togovar-dbsnp ### Update TTL for togovar-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-ensembl_gene.ttl is older than output/tsv/togovar-ensembl_gene.tsv ## Convert output/tsv/togovar-ensembl_gene.tsv => output/ttl/togovar-ensembl_gene.ttl -< 2024-11-23T07:10:59 togovar-ensembl_gene +< 2024-12-01T02:24:16 togovar-ensembl_gene togoid-config config/togovar-ensembl_gene convert -> 2024-11-23T07:28:26 togovar-ensembl_gene +> 2024-12-01T02:42:39 togovar-ensembl_gene ### Update TTL for togovar-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-ensembl_transcript.ttl is older than output/tsv/togovar-ensembl_transcript.tsv ## Convert output/tsv/togovar-ensembl_transcript.tsv => output/ttl/togovar-ensembl_transcript.ttl -< 2024-11-23T07:28:26 togovar-ensembl_transcript +< 2024-12-01T02:42:39 togovar-ensembl_transcript togoid-config config/togovar-ensembl_transcript convert -> 2024-11-23T09:59:56 togovar-ensembl_transcript +> 2024-12-01T05:25:41 togovar-ensembl_transcript ### Update TTL for togovar-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-hgnc.ttl is older than output/tsv/togovar-hgnc.tsv ## Convert output/tsv/togovar-hgnc.tsv => output/ttl/togovar-hgnc.ttl -< 2024-11-23T09:59:56 togovar-hgnc +< 2024-12-01T05:25:41 togovar-hgnc togoid-config config/togovar-hgnc convert -> 2024-11-23T10:08:53 togovar-hgnc +> 2024-12-01T05:34:46 togovar-hgnc ### Update TTL for togovar-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-ncbigene.ttl is older than output/tsv/togovar-ncbigene.tsv ## Convert output/tsv/togovar-ncbigene.tsv => output/ttl/togovar-ncbigene.ttl -< 2024-11-23T10:08:53 togovar-ncbigene +< 2024-12-01T05:34:46 togovar-ncbigene togoid-config config/togovar-ncbigene convert -> 2024-11-23T10:18:00 togovar-ncbigene +> 2024-12-01T05:43:48 togovar-ncbigene ### Update TTL for togovar-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-pubmed.ttl is older than output/tsv/togovar-pubmed.tsv ## Convert output/tsv/togovar-pubmed.tsv => output/ttl/togovar-pubmed.ttl -< 2024-11-23T10:18:00 togovar-pubmed +< 2024-12-01T05:43:48 togovar-pubmed togoid-config config/togovar-pubmed convert -> 2024-11-23T10:18:14 togovar-pubmed +> 2024-12-01T05:43:53 togovar-pubmed ### Update TTL for togovar-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-refseq_rna.ttl is older than output/tsv/togovar-refseq_rna.tsv ## Convert output/tsv/togovar-refseq_rna.tsv => output/ttl/togovar-refseq_rna.ttl -< 2024-11-23T10:18:14 togovar-refseq_rna +< 2024-12-01T05:43:53 togovar-refseq_rna togoid-config config/togovar-refseq_rna convert -> 2024-11-23T11:05:21 togovar-refseq_rna +> 2024-12-01T06:29:04 togovar-refseq_rna ### Update TTL for uberon-ncit_tissue if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uberon-ncit_tissue.ttl is older than output/tsv/uberon-ncit_tissue.tsv ## Convert output/tsv/uberon-ncit_tissue.tsv => output/ttl/uberon-ncit_tissue.ttl -< 2024-11-23T11:05:21 uberon-ncit_tissue +< 2024-12-01T06:29:04 uberon-ncit_tissue togoid-config config/uberon-ncit_tissue convert -> 2024-11-23T11:05:22 uberon-ncit_tissue -### Update TTL for uniprot-chembl_target if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-chembl_target.ttl is newer than output/tsv/uniprot-chembl_target.tsv -# => Preserving output/ttl/uniprot-chembl_target.ttl -### Update TTL for uniprot-dbsnp if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-dbsnp.ttl is newer than output/tsv/uniprot-dbsnp.tsv -# => Preserving output/ttl/uniprot-dbsnp.ttl -### Update TTL for uniprot-ec if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-ec.ttl is newer than output/tsv/uniprot-ec.tsv -# => Preserving output/ttl/uniprot-ec.ttl -### Update TTL for uniprot-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-ensembl_gene.ttl is newer than output/tsv/uniprot-ensembl_gene.tsv -# => Preserving output/ttl/uniprot-ensembl_gene.ttl -### Update TTL for uniprot-ensembl_protein if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-ensembl_protein.ttl is newer than output/tsv/uniprot-ensembl_protein.tsv -# => Preserving output/ttl/uniprot-ensembl_protein.ttl -### Update TTL for uniprot-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-ensembl_transcript.ttl is newer than output/tsv/uniprot-ensembl_transcript.tsv -# => Preserving output/ttl/uniprot-ensembl_transcript.ttl -### Update TTL for uniprot-go if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-go.ttl is newer than output/tsv/uniprot-go.tsv -# => Preserving output/ttl/uniprot-go.ttl -### Update TTL for uniprot-hgnc if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-hgnc.ttl is newer than output/tsv/uniprot-hgnc.tsv -# => Preserving output/ttl/uniprot-hgnc.ttl -### Update TTL for uniprot-insdc if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-insdc.ttl is newer than output/tsv/uniprot-insdc.tsv -# => Preserving output/ttl/uniprot-insdc.ttl -### Update TTL for uniprot-intact if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-intact.ttl is newer than output/tsv/uniprot-intact.tsv -# => Preserving output/ttl/uniprot-intact.ttl -### Update TTL for uniprot-ncbigene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-ncbigene.ttl is newer than output/tsv/uniprot-ncbigene.tsv -# => Preserving output/ttl/uniprot-ncbigene.ttl -### Update TTL for uniprot-oma_group if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-oma_group.ttl is newer than output/tsv/uniprot-oma_group.tsv -# => Preserving output/ttl/uniprot-oma_group.ttl -### Update TTL for uniprot-omim_gene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-omim_gene.ttl is newer than output/tsv/uniprot-omim_gene.tsv -# => Preserving output/ttl/uniprot-omim_gene.ttl -### Update TTL for uniprot-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-omim_phenotype.ttl is newer than output/tsv/uniprot-omim_phenotype.tsv -# => Preserving output/ttl/uniprot-omim_phenotype.ttl -### Update TTL for uniprot-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-orphanet_phenotype.ttl is newer than output/tsv/uniprot-orphanet_phenotype.tsv -# => Preserving output/ttl/uniprot-orphanet_phenotype.ttl -### Update TTL for uniprot-pdb if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-pdb.ttl is newer than output/tsv/uniprot-pdb.tsv -# => Preserving output/ttl/uniprot-pdb.ttl -### Update TTL for uniprot-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-reactome_pathway.ttl is newer than output/tsv/uniprot-reactome_pathway.tsv -# => Preserving output/ttl/uniprot-reactome_pathway.ttl -### Update TTL for uniprot-refseq_protein if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-refseq_protein.ttl is newer than output/tsv/uniprot-refseq_protein.tsv -# => Preserving output/ttl/uniprot-refseq_protein.ttl -### Update TTL for uniprot-taxonomy if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-taxonomy.ttl is newer than output/tsv/uniprot-taxonomy.tsv -# => Preserving output/ttl/uniprot-taxonomy.ttl -### Update TTL for uniprot-uniprot_mnemonic if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-uniprot_mnemonic.ttl is newer than output/tsv/uniprot-uniprot_mnemonic.tsv -# => Preserving output/ttl/uniprot-uniprot_mnemonic.ttl +> 2024-12-01T06:29:05 uberon-ncit_tissue +### Update TTL for uniprot-chembl_target if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-chembl_target.ttl is older than output/tsv/uniprot-chembl_target.tsv +## Convert output/tsv/uniprot-chembl_target.tsv => output/ttl/uniprot-chembl_target.ttl +< 2024-12-01T06:29:05 uniprot-chembl_target +togoid-config config/uniprot-chembl_target convert +> 2024-12-01T06:29:05 uniprot-chembl_target +### Update TTL for uniprot-dbsnp if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-dbsnp.ttl is older than output/tsv/uniprot-dbsnp.tsv +## Convert output/tsv/uniprot-dbsnp.tsv => output/ttl/uniprot-dbsnp.ttl +< 2024-12-01T06:29:05 uniprot-dbsnp +togoid-config config/uniprot-dbsnp convert +> 2024-12-01T06:29:06 uniprot-dbsnp +### Update TTL for uniprot-ec if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-ec.ttl is older than output/tsv/uniprot-ec.tsv +## Convert output/tsv/uniprot-ec.tsv => output/ttl/uniprot-ec.ttl +< 2024-12-01T06:29:06 uniprot-ec +togoid-config config/uniprot-ec convert +> 2024-12-01T06:35:15 uniprot-ec +### Update TTL for uniprot-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-ensembl_gene.ttl is older than output/tsv/uniprot-ensembl_gene.tsv +## Convert output/tsv/uniprot-ensembl_gene.tsv => output/ttl/uniprot-ensembl_gene.ttl +< 2024-12-01T06:35:15 uniprot-ensembl_gene +togoid-config config/uniprot-ensembl_gene convert +> 2024-12-01T06:36:42 uniprot-ensembl_gene +### Update TTL for uniprot-ensembl_protein if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-ensembl_protein.ttl is older than output/tsv/uniprot-ensembl_protein.tsv +## Convert output/tsv/uniprot-ensembl_protein.tsv => output/ttl/uniprot-ensembl_protein.ttl +< 2024-12-01T06:36:42 uniprot-ensembl_protein +togoid-config config/uniprot-ensembl_protein convert +> 2024-12-01T06:38:10 uniprot-ensembl_protein +### Update TTL for uniprot-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-ensembl_transcript.ttl is older than output/tsv/uniprot-ensembl_transcript.tsv +## Convert output/tsv/uniprot-ensembl_transcript.tsv => output/ttl/uniprot-ensembl_transcript.ttl +< 2024-12-01T06:38:10 uniprot-ensembl_transcript +togoid-config config/uniprot-ensembl_transcript convert +> 2024-12-01T06:39:38 uniprot-ensembl_transcript +### Update TTL for uniprot-go if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-go.ttl is older than output/tsv/uniprot-go.tsv +## Convert output/tsv/uniprot-go.tsv => output/ttl/uniprot-go.ttl +< 2024-12-01T06:39:38 uniprot-go +togoid-config config/uniprot-go convert +> 2024-12-01T09:56:44 uniprot-go +### Update TTL for uniprot-hgnc if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-hgnc.ttl is older than output/tsv/uniprot-hgnc.tsv +## Convert output/tsv/uniprot-hgnc.tsv => output/ttl/uniprot-hgnc.ttl +< 2024-12-01T09:56:44 uniprot-hgnc +togoid-config config/uniprot-hgnc convert +> 2024-12-01T09:56:46 uniprot-hgnc +### Update TTL for uniprot-insdc if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-insdc.ttl is older than output/tsv/uniprot-insdc.tsv +## Convert output/tsv/uniprot-insdc.tsv => output/ttl/uniprot-insdc.ttl +< 2024-12-01T09:56:46 uniprot-insdc +togoid-config config/uniprot-insdc convert +> 2024-12-01T11:25:53 uniprot-insdc +### Update TTL for uniprot-intact if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-intact.ttl is older than output/tsv/uniprot-intact.tsv +## Convert output/tsv/uniprot-intact.tsv => output/ttl/uniprot-intact.ttl +< 2024-12-01T11:25:53 uniprot-intact +togoid-config config/uniprot-intact convert +> 2024-12-01T11:25:56 uniprot-intact +### Update TTL for uniprot-ncbigene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-ncbigene.ttl is older than output/tsv/uniprot-ncbigene.tsv +## Convert output/tsv/uniprot-ncbigene.tsv => output/ttl/uniprot-ncbigene.ttl +< 2024-12-01T11:25:56 uniprot-ncbigene +togoid-config config/uniprot-ncbigene convert +> 2024-12-01T11:27:39 uniprot-ncbigene +### Update TTL for uniprot-oma_group if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-oma_group.ttl is older than output/tsv/uniprot-oma_group.tsv +## Convert output/tsv/uniprot-oma_group.tsv => output/ttl/uniprot-oma_group.ttl +< 2024-12-01T11:27:39 uniprot-oma_group +togoid-config config/uniprot-oma_group convert +> 2024-12-01T11:28:36 uniprot-oma_group +### Update TTL for uniprot-omim_gene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-omim_gene.ttl is older than output/tsv/uniprot-omim_gene.tsv +## Convert output/tsv/uniprot-omim_gene.tsv => output/ttl/uniprot-omim_gene.ttl +< 2024-12-01T11:28:36 uniprot-omim_gene +togoid-config config/uniprot-omim_gene convert +> 2024-12-01T11:28:37 uniprot-omim_gene +### Update TTL for uniprot-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-omim_phenotype.ttl is older than output/tsv/uniprot-omim_phenotype.tsv +## Convert output/tsv/uniprot-omim_phenotype.tsv => output/ttl/uniprot-omim_phenotype.ttl +< 2024-12-01T11:28:37 uniprot-omim_phenotype +togoid-config config/uniprot-omim_phenotype convert +> 2024-12-01T11:28:37 uniprot-omim_phenotype +### Update TTL for uniprot-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-orphanet_phenotype.ttl is older than output/tsv/uniprot-orphanet_phenotype.tsv +## Convert output/tsv/uniprot-orphanet_phenotype.tsv => output/ttl/uniprot-orphanet_phenotype.ttl +< 2024-12-01T11:28:37 uniprot-orphanet_phenotype +togoid-config config/uniprot-orphanet_phenotype convert +> 2024-12-01T11:28:37 uniprot-orphanet_phenotype +### Update TTL for uniprot-pdb if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-pdb.ttl is older than output/tsv/uniprot-pdb.tsv +## Convert output/tsv/uniprot-pdb.tsv => output/ttl/uniprot-pdb.ttl +< 2024-12-01T11:28:37 uniprot-pdb +togoid-config config/uniprot-pdb convert +> 2024-12-01T11:28:41 uniprot-pdb +### Update TTL for uniprot-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-reactome_pathway.ttl is older than output/tsv/uniprot-reactome_pathway.tsv +## Convert output/tsv/uniprot-reactome_pathway.tsv => output/ttl/uniprot-reactome_pathway.ttl +< 2024-12-01T11:28:41 uniprot-reactome_pathway +togoid-config config/uniprot-reactome_pathway convert +> 2024-12-01T11:28:43 uniprot-reactome_pathway +### Update TTL for uniprot-refseq_protein if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-refseq_protein.ttl is older than output/tsv/uniprot-refseq_protein.tsv +## Convert output/tsv/uniprot-refseq_protein.tsv => output/ttl/uniprot-refseq_protein.ttl +< 2024-12-01T11:28:43 uniprot-refseq_protein +togoid-config config/uniprot-refseq_protein convert +> 2024-12-01T11:36:12 uniprot-refseq_protein +### Update TTL for uniprot-taxonomy if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-taxonomy.ttl is older than output/tsv/uniprot-taxonomy.tsv +## Convert output/tsv/uniprot-taxonomy.tsv => output/ttl/uniprot-taxonomy.ttl +< 2024-12-01T11:36:12 uniprot-taxonomy +togoid-config config/uniprot-taxonomy convert +> 2024-12-01T12:33:47 uniprot-taxonomy +### Update TTL for uniprot-uniprot_mnemonic if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-uniprot_mnemonic.ttl is older than output/tsv/uniprot-uniprot_mnemonic.tsv +## Convert output/tsv/uniprot-uniprot_mnemonic.tsv => output/ttl/uniprot-uniprot_mnemonic.ttl +< 2024-12-01T12:33:48 uniprot-uniprot_mnemonic +togoid-config config/uniprot-uniprot_mnemonic convert +> 2024-12-01T14:32:53 uniprot-uniprot_mnemonic ### Update TTL for uniprot_reference_proteome-assembly_insdc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uniprot_reference_proteome-assembly_insdc.ttl is older than output/tsv/uniprot_reference_proteome-assembly_insdc.tsv ## Convert output/tsv/uniprot_reference_proteome-assembly_insdc.tsv => output/ttl/uniprot_reference_proteome-assembly_insdc.ttl -< 2024-11-23T11:05:22 uniprot_reference_proteome-assembly_insdc +< 2024-12-01T14:32:53 uniprot_reference_proteome-assembly_insdc togoid-config config/uniprot_reference_proteome-assembly_insdc convert -> 2024-11-23T11:05:28 uniprot_reference_proteome-assembly_insdc +> 2024-12-01T14:33:01 uniprot_reference_proteome-assembly_insdc ### Update TTL for uniprot_reference_proteome-assembly_refseq if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uniprot_reference_proteome-assembly_refseq.ttl is older than output/tsv/uniprot_reference_proteome-assembly_refseq.tsv ## Convert output/tsv/uniprot_reference_proteome-assembly_refseq.tsv => output/ttl/uniprot_reference_proteome-assembly_refseq.ttl -< 2024-11-23T11:05:28 uniprot_reference_proteome-assembly_refseq +< 2024-12-01T14:33:01 uniprot_reference_proteome-assembly_refseq togoid-config config/uniprot_reference_proteome-assembly_refseq convert -> 2024-11-23T11:05:28 uniprot_reference_proteome-assembly_refseq +> 2024-12-01T14:33:02 uniprot_reference_proteome-assembly_refseq ### Update TTL for uniprot_reference_proteome-taxonomy if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uniprot_reference_proteome-taxonomy.ttl is older than output/tsv/uniprot_reference_proteome-taxonomy.tsv ## Convert output/tsv/uniprot_reference_proteome-taxonomy.tsv => output/ttl/uniprot_reference_proteome-taxonomy.ttl -< 2024-11-23T11:05:28 uniprot_reference_proteome-taxonomy +< 2024-12-01T14:33:02 uniprot_reference_proteome-taxonomy togoid-config config/uniprot_reference_proteome-taxonomy convert -> 2024-11-23T11:05:34 uniprot_reference_proteome-taxonomy +> 2024-12-01T14:33:09 uniprot_reference_proteome-taxonomy ### Update TTL for wikipathways-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-chebi.ttl is older than output/tsv/wikipathways-chebi.tsv ## Convert output/tsv/wikipathways-chebi.tsv => output/ttl/wikipathways-chebi.ttl -< 2024-11-23T11:05:34 wikipathways-chebi +< 2024-12-01T14:33:09 wikipathways-chebi togoid-config config/wikipathways-chebi convert -> 2024-11-23T11:05:34 wikipathways-chebi +> 2024-12-01T14:33:09 wikipathways-chebi ### Update TTL for wikipathways-doid if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-doid.ttl is older than output/tsv/wikipathways-doid.tsv ## Convert output/tsv/wikipathways-doid.tsv => output/ttl/wikipathways-doid.ttl -< 2024-11-23T11:05:34 wikipathways-doid +< 2024-12-01T14:33:09 wikipathways-doid togoid-config config/wikipathways-doid convert -> 2024-11-23T11:05:34 wikipathways-doid +> 2024-12-01T14:33:09 wikipathways-doid ### Update TTL for wikipathways-hmdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-hmdb.ttl is older than output/tsv/wikipathways-hmdb.tsv ## Convert output/tsv/wikipathways-hmdb.tsv => output/ttl/wikipathways-hmdb.ttl -< 2024-11-23T11:05:35 wikipathways-hmdb +< 2024-12-01T14:33:09 wikipathways-hmdb togoid-config config/wikipathways-hmdb convert -> 2024-11-23T11:05:35 wikipathways-hmdb +> 2024-12-01T14:33:10 wikipathways-hmdb ### Update TTL for wikipathways-lipidmaps if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-lipidmaps.ttl is older than output/tsv/wikipathways-lipidmaps.tsv ## Convert output/tsv/wikipathways-lipidmaps.tsv => output/ttl/wikipathways-lipidmaps.ttl -< 2024-11-23T11:05:35 wikipathways-lipidmaps +< 2024-12-01T14:33:10 wikipathways-lipidmaps togoid-config config/wikipathways-lipidmaps convert -> 2024-11-23T11:05:35 wikipathways-lipidmaps +> 2024-12-01T14:33:10 wikipathways-lipidmaps ### Update TTL for wikipathways-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-ncbigene.ttl is older than output/tsv/wikipathways-ncbigene.tsv ## Convert output/tsv/wikipathways-ncbigene.tsv => output/ttl/wikipathways-ncbigene.ttl -< 2024-11-23T11:05:35 wikipathways-ncbigene +< 2024-12-01T14:33:10 wikipathways-ncbigene togoid-config config/wikipathways-ncbigene convert -> 2024-11-23T11:05:35 wikipathways-ncbigene +> 2024-12-01T14:33:10 wikipathways-ncbigene ### Update TTL for wikipathways-uniprot if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/wikipathways-uniprot.ttl is newer than output/tsv/wikipathways-uniprot.tsv # => Preserving output/ttl/wikipathways-uniprot.ttl @@ -7058,12 +7287,12 @@ Rule for TTL (output/ttl/bioproject-biosample.ttl) Investigating output/ttl/bioproject-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:21:40 +0900 +timestamp: 2024-11-30 15:48:02 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/bioproject-biosample.tsv (2024-11-22 21:54:01 +0900) -latest-prerequisite time: 2024-11-22 21:54:01 +0900 +--output/tsv/bioproject-biosample.tsv (2024-11-29 21:37:29 +0900) +latest-prerequisite time: 2024-11-29 21:37:29 +0900 ................................ Rule for TTL (output/ttl/bioproject-geo_series.ttl) @@ -7071,12 +7300,12 @@ Rule for TTL (output/ttl/bioproject-geo_series.ttl) Investigating output/ttl/bioproject-geo_series.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:21:45 +0900 +timestamp: 2024-11-30 15:48:05 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/bioproject-geo_series.tsv (2024-11-22 21:54:03 +0900) -latest-prerequisite time: 2024-11-22 21:54:03 +0900 +--output/tsv/bioproject-geo_series.tsv (2024-11-29 21:37:31 +0900) +latest-prerequisite time: 2024-11-29 21:37:31 +0900 ................................ Rule for TTL (output/ttl/bioproject-pubmed.ttl) @@ -7084,12 +7313,12 @@ Rule for TTL (output/ttl/bioproject-pubmed.ttl) Investigating output/ttl/bioproject-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:21:56 +0900 +timestamp: 2024-11-30 15:48:07 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/bioproject-pubmed.tsv (2024-11-22 21:54:04 +0900) -latest-prerequisite time: 2024-11-22 21:54:04 +0900 +--output/tsv/bioproject-pubmed.tsv (2024-11-29 21:37:33 +0900) +latest-prerequisite time: 2024-11-29 21:37:33 +0900 ................................ Rule for TTL (output/ttl/bioproject_umbrella-bioproject.ttl) @@ -7097,12 +7326,12 @@ Rule for TTL (output/ttl/bioproject_umbrella-bioproject.ttl) Investigating output/ttl/bioproject_umbrella-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:22:00 +0900 +timestamp: 2024-11-30 15:48:08 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/bioproject_umbrella-bioproject.tsv (2024-11-22 21:54:05 +0900) -latest-prerequisite time: 2024-11-22 21:54:05 +0900 +--output/tsv/bioproject_umbrella-bioproject.tsv (2024-11-29 21:37:33 +0900) +latest-prerequisite time: 2024-11-29 21:37:33 +0900 ................................ Rule for TTL (output/ttl/biosample-bioproject.ttl) @@ -7110,12 +7339,12 @@ Rule for TTL (output/ttl/biosample-bioproject.ttl) Investigating output/ttl/biosample-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:26:05 +0900 +timestamp: 2024-11-30 15:50:57 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/biosample-bioproject.tsv (2024-11-22 21:55:22 +0900) -latest-prerequisite time: 2024-11-22 21:55:22 +0900 +--output/tsv/biosample-bioproject.tsv (2024-11-29 21:39:01 +0900) +latest-prerequisite time: 2024-11-29 21:39:01 +0900 ................................ Rule for TTL (output/ttl/biosample-geo_sample.ttl) @@ -7123,12 +7352,12 @@ Rule for TTL (output/ttl/biosample-geo_sample.ttl) Investigating output/ttl/biosample-geo_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:27:21 +0900 +timestamp: 2024-11-30 15:52:15 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/biosample-geo_sample.tsv (2024-11-22 21:56:56 +0900) -latest-prerequisite time: 2024-11-22 21:56:56 +0900 +--output/tsv/biosample-geo_sample.tsv (2024-11-29 21:40:34 +0900) +latest-prerequisite time: 2024-11-29 21:40:34 +0900 ................................ Rule for TTL (output/ttl/cellosaurus-ncit_disease.ttl) @@ -7175,12 +7404,12 @@ Rule for TTL (output/ttl/clinvar-dbsnp.ttl) Investigating output/ttl/clinvar-dbsnp.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:29:57 +0900 +timestamp: 2024-11-30 15:54:03 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-dbsnp.tsv (2024-11-22 22:14:12 +0900) -latest-prerequisite time: 2024-11-22 22:14:12 +0900 +--output/tsv/clinvar-dbsnp.tsv (2024-11-29 21:57:37 +0900) +latest-prerequisite time: 2024-11-29 21:57:37 +0900 ................................ Rule for TTL (output/ttl/clinvar-hgnc.ttl) @@ -7188,12 +7417,12 @@ Rule for TTL (output/ttl/clinvar-hgnc.ttl) Investigating output/ttl/clinvar-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:30:30 +0900 +timestamp: 2024-11-30 15:54:24 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-hgnc.tsv (2024-11-22 22:15:05 +0900) -latest-prerequisite time: 2024-11-22 22:15:05 +0900 +--output/tsv/clinvar-hgnc.tsv (2024-11-29 21:58:31 +0900) +latest-prerequisite time: 2024-11-29 21:58:31 +0900 ................................ Rule for TTL (output/ttl/clinvar-medgen.ttl) @@ -7201,12 +7430,12 @@ Rule for TTL (output/ttl/clinvar-medgen.ttl) Investigating output/ttl/clinvar-medgen.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:31:15 +0900 +timestamp: 2024-11-30 15:54:55 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-medgen.tsv (2024-11-22 22:16:39 +0900) -latest-prerequisite time: 2024-11-22 22:16:39 +0900 +--output/tsv/clinvar-medgen.tsv (2024-11-29 22:00:05 +0900) +latest-prerequisite time: 2024-11-29 22:00:05 +0900 ................................ Rule for TTL (output/ttl/clinvar-mondo.ttl) @@ -7214,12 +7443,12 @@ Rule for TTL (output/ttl/clinvar-mondo.ttl) Investigating output/ttl/clinvar-mondo.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:31:38 +0900 +timestamp: 2024-11-30 15:55:09 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-mondo.tsv (2024-11-22 22:18:09 +0900) -latest-prerequisite time: 2024-11-22 22:18:09 +0900 +--output/tsv/clinvar-mondo.tsv (2024-11-29 22:01:35 +0900) +latest-prerequisite time: 2024-11-29 22:01:35 +0900 ................................ Rule for TTL (output/ttl/clinvar-ncbigene.ttl) @@ -7227,12 +7456,12 @@ Rule for TTL (output/ttl/clinvar-ncbigene.ttl) Investigating output/ttl/clinvar-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:32:08 +0900 +timestamp: 2024-11-30 15:55:32 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-ncbigene.tsv (2024-11-22 22:19:01 +0900) -latest-prerequisite time: 2024-11-22 22:19:01 +0900 +--output/tsv/clinvar-ncbigene.tsv (2024-11-29 22:02:28 +0900) +latest-prerequisite time: 2024-11-29 22:02:28 +0900 ................................ Rule for TTL (output/ttl/clinvar-omim_phenotype.ttl) @@ -7240,12 +7469,12 @@ Rule for TTL (output/ttl/clinvar-omim_phenotype.ttl) Investigating output/ttl/clinvar-omim_phenotype.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:32:26 +0900 +timestamp: 2024-11-30 15:55:43 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-omim_phenotype.tsv (2024-11-22 22:20:30 +0900) -latest-prerequisite time: 2024-11-22 22:20:30 +0900 +--output/tsv/clinvar-omim_phenotype.tsv (2024-11-29 22:03:58 +0900) +latest-prerequisite time: 2024-11-29 22:03:58 +0900 ................................ Rule for TTL (output/ttl/clinvar-orphanet_phenotype.ttl) @@ -7253,12 +7482,12 @@ Rule for TTL (output/ttl/clinvar-orphanet_phenotype.ttl) Investigating output/ttl/clinvar-orphanet_phenotype.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:32:45 +0900 +timestamp: 2024-11-30 15:55:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-orphanet_phenotype.tsv (2024-11-22 22:21:59 +0900) -latest-prerequisite time: 2024-11-22 22:21:59 +0900 +--output/tsv/clinvar-orphanet_phenotype.tsv (2024-11-29 22:05:29 +0900) +latest-prerequisite time: 2024-11-29 22:05:29 +0900 ................................ Rule for TTL (output/ttl/clinvar-uniprot.ttl) @@ -7266,12 +7495,12 @@ Rule for TTL (output/ttl/clinvar-uniprot.ttl) Investigating output/ttl/clinvar-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:32:46 +0900 +timestamp: 2024-11-30 15:55:59 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/clinvar-uniprot.tsv (2024-11-22 22:22:49 +0900) -latest-prerequisite time: 2024-11-22 22:22:49 +0900 +--output/tsv/clinvar-uniprot.tsv (2024-11-29 22:06:19 +0900) +latest-prerequisite time: 2024-11-29 22:06:19 +0900 ................................ Rule for TTL (output/ttl/cog-insdc.ttl) @@ -7305,12 +7534,12 @@ Rule for TTL (output/ttl/ensembl_gene-affy_probeset.ttl) Investigating output/ttl/ensembl_gene-affy_probeset.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:32:49 +0900 +timestamp: 2024-11-30 15:56:00 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_gene-affy_probeset.tsv (2024-11-22 22:23:38 +0900) -latest-prerequisite time: 2024-11-22 22:23:38 +0900 +--output/tsv/ensembl_gene-affy_probeset.tsv (2024-11-29 22:07:18 +0900) +latest-prerequisite time: 2024-11-29 22:07:18 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ensembl_protein.ttl) @@ -7318,12 +7547,12 @@ Rule for TTL (output/ttl/ensembl_gene-ensembl_protein.ttl) Investigating output/ttl/ensembl_gene-ensembl_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:37:37 +0900 +timestamp: 2024-11-30 15:58:07 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_gene-ensembl_protein.tsv (2024-11-22 22:25:33 +0900) -latest-prerequisite time: 2024-11-22 22:25:33 +0900 +--output/tsv/ensembl_gene-ensembl_protein.tsv (2024-11-29 22:09:07 +0900) +latest-prerequisite time: 2024-11-29 22:09:07 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ensembl_transcript.ttl) @@ -7331,12 +7560,12 @@ Rule for TTL (output/ttl/ensembl_gene-ensembl_transcript.ttl) Investigating output/ttl/ensembl_gene-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:42:44 +0900 +timestamp: 2024-11-30 16:00:40 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_gene-ensembl_transcript.tsv (2024-11-22 22:27:31 +0900) -latest-prerequisite time: 2024-11-22 22:27:31 +0900 +--output/tsv/ensembl_gene-ensembl_transcript.tsv (2024-11-29 22:11:08 +0900) +latest-prerequisite time: 2024-11-29 22:11:08 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-hgnc.ttl) @@ -7344,12 +7573,12 @@ Rule for TTL (output/ttl/ensembl_gene-hgnc.ttl) Investigating output/ttl/ensembl_gene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:42:45 +0900 +timestamp: 2024-11-30 16:00:41 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_gene-hgnc.tsv (2024-11-22 22:27:32 +0900) -latest-prerequisite time: 2024-11-22 22:27:32 +0900 +--output/tsv/ensembl_gene-hgnc.tsv (2024-11-29 22:11:09 +0900) +latest-prerequisite time: 2024-11-29 22:11:09 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ncbigene.ttl) @@ -7357,12 +7586,12 @@ Rule for TTL (output/ttl/ensembl_gene-ncbigene.ttl) Investigating output/ttl/ensembl_gene-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:45:15 +0900 +timestamp: 2024-11-30 16:02:56 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_gene-ncbigene.tsv (2024-11-22 22:29:27 +0900) -latest-prerequisite time: 2024-11-22 22:29:27 +0900 +--output/tsv/ensembl_gene-ncbigene.tsv (2024-11-29 22:13:06 +0900) +latest-prerequisite time: 2024-11-29 22:13:06 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-uniprot.ttl) @@ -7370,12 +7599,12 @@ Rule for TTL (output/ttl/ensembl_gene-uniprot.ttl) Investigating output/ttl/ensembl_gene-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:46:09 +0900 +timestamp: 2024-11-30 16:03:45 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_gene-uniprot.tsv (2024-11-22 22:30:48 +0900) -latest-prerequisite time: 2024-11-22 22:30:48 +0900 +--output/tsv/ensembl_gene-uniprot.tsv (2024-11-29 22:14:29 +0900) +latest-prerequisite time: 2024-11-29 22:14:29 +0900 ................................ Rule for TTL (output/ttl/ensembl_protein-ensembl_transcript.ttl) @@ -7383,12 +7612,12 @@ Rule for TTL (output/ttl/ensembl_protein-ensembl_transcript.ttl) Investigating output/ttl/ensembl_protein-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:49:55 +0900 +timestamp: 2024-11-30 16:05:50 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_protein-ensembl_transcript.tsv (2024-11-22 22:32:42 +0900) -latest-prerequisite time: 2024-11-22 22:32:42 +0900 +--output/tsv/ensembl_protein-ensembl_transcript.tsv (2024-11-29 22:16:26 +0900) +latest-prerequisite time: 2024-11-29 22:16:26 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-affy_probeset.ttl) @@ -7396,12 +7625,12 @@ Rule for TTL (output/ttl/ensembl_transcript-affy_probeset.ttl) Investigating output/ttl/ensembl_transcript-affy_probeset.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 01:49:58 +0900 +timestamp: 2024-11-30 16:05:53 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_transcript-affy_probeset.tsv (2024-11-22 22:33:34 +0900) -latest-prerequisite time: 2024-11-22 22:33:34 +0900 +--output/tsv/ensembl_transcript-affy_probeset.tsv (2024-11-29 22:17:25 +0900) +latest-prerequisite time: 2024-11-29 22:17:25 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-go.ttl) @@ -7409,12 +7638,12 @@ Rule for TTL (output/ttl/ensembl_transcript-go.ttl) Investigating output/ttl/ensembl_transcript-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:03:34 +0900 +timestamp: 2024-11-30 16:18:07 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_transcript-go.tsv (2024-11-22 22:37:25 +0900) -latest-prerequisite time: 2024-11-22 22:37:25 +0900 +--output/tsv/ensembl_transcript-go.tsv (2024-11-29 22:21:35 +0900) +latest-prerequisite time: 2024-11-29 22:21:35 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-hgnc.ttl) @@ -7422,12 +7651,12 @@ Rule for TTL (output/ttl/ensembl_transcript-hgnc.ttl) Investigating output/ttl/ensembl_transcript-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:03:39 +0900 +timestamp: 2024-11-30 16:18:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_transcript-hgnc.tsv (2024-11-22 22:37:26 +0900) -latest-prerequisite time: 2024-11-22 22:37:26 +0900 +--output/tsv/ensembl_transcript-hgnc.tsv (2024-11-29 22:21:36 +0900) +latest-prerequisite time: 2024-11-29 22:21:36 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-refseq_rna.ttl) @@ -7435,12 +7664,12 @@ Rule for TTL (output/ttl/ensembl_transcript-refseq_rna.ttl) Investigating output/ttl/ensembl_transcript-refseq_rna.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:23 +0900 +timestamp: 2024-11-30 16:26:13 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ensembl_transcript-refseq_rna.tsv (2024-11-22 22:40:42 +0900) -latest-prerequisite time: 2024-11-22 22:40:42 +0900 +--output/tsv/ensembl_transcript-refseq_rna.tsv (2024-11-29 22:25:01 +0900) +latest-prerequisite time: 2024-11-29 22:25:01 +0900 ................................ Rule for TTL (output/ttl/glycomotif-glytoucan.ttl) @@ -7474,12 +7703,12 @@ Rule for TTL (output/ttl/glytoucan-ncbigene.ttl) Investigating output/ttl/glytoucan-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:26 +0900 +timestamp: 2024-11-30 16:26:14 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/glytoucan-ncbigene.tsv (2024-11-22 22:41:24 +0900) -latest-prerequisite time: 2024-11-22 22:41:24 +0900 +--output/tsv/glytoucan-ncbigene.tsv (2024-11-29 22:25:47 +0900) +latest-prerequisite time: 2024-11-29 22:25:47 +0900 ................................ Rule for TTL (output/ttl/glytoucan-uniprot.ttl) @@ -7487,12 +7716,12 @@ Rule for TTL (output/ttl/glytoucan-uniprot.ttl) Investigating output/ttl/glytoucan-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:27 +0900 +timestamp: 2024-11-30 16:26:15 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/glytoucan-uniprot.tsv (2024-11-22 22:41:26 +0900) -latest-prerequisite time: 2024-11-22 22:41:26 +0900 +--output/tsv/glytoucan-uniprot.tsv (2024-11-29 22:25:49 +0900) +latest-prerequisite time: 2024-11-29 22:25:49 +0900 ................................ Rule for TTL (output/ttl/hgnc-ccds.ttl) @@ -7513,12 +7742,12 @@ Rule for TTL (output/ttl/hgnc-ec.ttl) Investigating output/ttl/hgnc-ec.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:28 +0900 +timestamp: 2024-11-30 16:26:15 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-ec.tsv (2024-11-22 22:41:27 +0900) -latest-prerequisite time: 2024-11-22 22:41:27 +0900 +--output/tsv/hgnc-ec.tsv (2024-11-29 22:25:50 +0900) +latest-prerequisite time: 2024-11-29 22:25:50 +0900 ................................ Rule for TTL (output/ttl/hgnc-ensembl_gene.ttl) @@ -7526,12 +7755,12 @@ Rule for TTL (output/ttl/hgnc-ensembl_gene.ttl) Investigating output/ttl/hgnc-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:29 +0900 +timestamp: 2024-11-30 16:26:16 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-ensembl_gene.tsv (2024-11-22 22:41:28 +0900) -latest-prerequisite time: 2024-11-22 22:41:28 +0900 +--output/tsv/hgnc-ensembl_gene.tsv (2024-11-29 22:25:50 +0900) +latest-prerequisite time: 2024-11-29 22:25:50 +0900 ................................ Rule for TTL (output/ttl/hgnc-hgnc_symbol.ttl) @@ -7539,12 +7768,12 @@ Rule for TTL (output/ttl/hgnc-hgnc_symbol.ttl) Investigating output/ttl/hgnc-hgnc_symbol.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:30 +0900 +timestamp: 2024-11-30 16:26:16 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-hgnc_symbol.tsv (2024-11-22 22:41:28 +0900) -latest-prerequisite time: 2024-11-22 22:41:28 +0900 +--output/tsv/hgnc-hgnc_symbol.tsv (2024-11-29 22:25:51 +0900) +latest-prerequisite time: 2024-11-29 22:25:51 +0900 ................................ Rule for TTL (output/ttl/hgnc-insdc.ttl) @@ -7552,12 +7781,12 @@ Rule for TTL (output/ttl/hgnc-insdc.ttl) Investigating output/ttl/hgnc-insdc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:30 +0900 +timestamp: 2024-11-30 16:26:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-insdc.tsv (2024-11-22 22:41:29 +0900) -latest-prerequisite time: 2024-11-22 22:41:29 +0900 +--output/tsv/hgnc-insdc.tsv (2024-11-29 22:25:51 +0900) +latest-prerequisite time: 2024-11-29 22:25:51 +0900 ................................ Rule for TTL (output/ttl/hgnc-lrg.ttl) @@ -7565,12 +7794,12 @@ Rule for TTL (output/ttl/hgnc-lrg.ttl) Investigating output/ttl/hgnc-lrg.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:31 +0900 +timestamp: 2024-11-30 16:26:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-lrg.tsv (2024-11-22 22:41:29 +0900) -latest-prerequisite time: 2024-11-22 22:41:29 +0900 +--output/tsv/hgnc-lrg.tsv (2024-11-29 22:25:52 +0900) +latest-prerequisite time: 2024-11-29 22:25:52 +0900 ................................ Rule for TTL (output/ttl/hgnc-mgi_gene.ttl) @@ -7578,12 +7807,12 @@ Rule for TTL (output/ttl/hgnc-mgi_gene.ttl) Investigating output/ttl/hgnc-mgi_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:31 +0900 +timestamp: 2024-11-30 16:26:18 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-mgi_gene.tsv (2024-11-22 22:41:30 +0900) -latest-prerequisite time: 2024-11-22 22:41:30 +0900 +--output/tsv/hgnc-mgi_gene.tsv (2024-11-29 22:25:52 +0900) +latest-prerequisite time: 2024-11-29 22:25:52 +0900 ................................ Rule for TTL (output/ttl/hgnc-mirbase.ttl) @@ -7591,12 +7820,12 @@ Rule for TTL (output/ttl/hgnc-mirbase.ttl) Investigating output/ttl/hgnc-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:32 +0900 +timestamp: 2024-11-30 16:26:18 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-mirbase.tsv (2024-11-22 22:41:30 +0900) -latest-prerequisite time: 2024-11-22 22:41:30 +0900 +--output/tsv/hgnc-mirbase.tsv (2024-11-29 22:25:53 +0900) +latest-prerequisite time: 2024-11-29 22:25:53 +0900 ................................ Rule for TTL (output/ttl/hgnc-ncbigene.ttl) @@ -7604,12 +7833,12 @@ Rule for TTL (output/ttl/hgnc-ncbigene.ttl) Investigating output/ttl/hgnc-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:32 +0900 +timestamp: 2024-11-30 16:26:18 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-ncbigene.tsv (2024-11-22 22:41:31 +0900) -latest-prerequisite time: 2024-11-22 22:41:31 +0900 +--output/tsv/hgnc-ncbigene.tsv (2024-11-29 22:25:53 +0900) +latest-prerequisite time: 2024-11-29 22:25:53 +0900 ................................ Rule for TTL (output/ttl/hgnc-omim_gene.ttl) @@ -7617,12 +7846,12 @@ Rule for TTL (output/ttl/hgnc-omim_gene.ttl) Investigating output/ttl/hgnc-omim_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:33 +0900 +timestamp: 2024-11-30 16:26:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-omim_gene.tsv (2024-11-22 22:41:31 +0900) -latest-prerequisite time: 2024-11-22 22:41:31 +0900 +--output/tsv/hgnc-omim_gene.tsv (2024-11-29 22:25:54 +0900) +latest-prerequisite time: 2024-11-29 22:25:54 +0900 ................................ Rule for TTL (output/ttl/hgnc-pubmed.ttl) @@ -7630,12 +7859,12 @@ Rule for TTL (output/ttl/hgnc-pubmed.ttl) Investigating output/ttl/hgnc-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:33 +0900 +timestamp: 2024-11-30 16:26:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-pubmed.tsv (2024-11-22 22:41:32 +0900) -latest-prerequisite time: 2024-11-22 22:41:32 +0900 +--output/tsv/hgnc-pubmed.tsv (2024-11-29 22:25:55 +0900) +latest-prerequisite time: 2024-11-29 22:25:55 +0900 ................................ Rule for TTL (output/ttl/hgnc-refseq_genomic.ttl) @@ -7643,12 +7872,12 @@ Rule for TTL (output/ttl/hgnc-refseq_genomic.ttl) Investigating output/ttl/hgnc-refseq_genomic.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:34 +0900 +timestamp: 2024-11-30 16:26:20 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-refseq_genomic.tsv (2024-11-22 22:41:33 +0900) -latest-prerequisite time: 2024-11-22 22:41:33 +0900 +--output/tsv/hgnc-refseq_genomic.tsv (2024-11-29 22:25:55 +0900) +latest-prerequisite time: 2024-11-29 22:25:55 +0900 ................................ Rule for TTL (output/ttl/hgnc-refseq_rna.ttl) @@ -7656,12 +7885,12 @@ Rule for TTL (output/ttl/hgnc-refseq_rna.ttl) Investigating output/ttl/hgnc-refseq_rna.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:35 +0900 +timestamp: 2024-11-30 16:26:20 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-refseq_rna.tsv (2024-11-22 22:41:33 +0900) -latest-prerequisite time: 2024-11-22 22:41:33 +0900 +--output/tsv/hgnc-refseq_rna.tsv (2024-11-29 22:25:56 +0900) +latest-prerequisite time: 2024-11-29 22:25:56 +0900 ................................ Rule for TTL (output/ttl/hgnc-rgd.ttl) @@ -7669,12 +7898,12 @@ Rule for TTL (output/ttl/hgnc-rgd.ttl) Investigating output/ttl/hgnc-rgd.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:35 +0900 +timestamp: 2024-11-30 16:26:20 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-rgd.tsv (2024-11-22 22:41:34 +0900) -latest-prerequisite time: 2024-11-22 22:41:34 +0900 +--output/tsv/hgnc-rgd.tsv (2024-11-29 22:25:56 +0900) +latest-prerequisite time: 2024-11-29 22:25:56 +0900 ................................ Rule for TTL (output/ttl/hgnc-uniprot.ttl) @@ -7682,12 +7911,12 @@ Rule for TTL (output/ttl/hgnc-uniprot.ttl) Investigating output/ttl/hgnc-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 02:14:36 +0900 +timestamp: 2024-11-30 16:26:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/hgnc-uniprot.tsv (2024-11-22 22:41:34 +0900) -latest-prerequisite time: 2024-11-22 22:41:34 +0900 +--output/tsv/hgnc-uniprot.tsv (2024-11-29 22:25:57 +0900) +latest-prerequisite time: 2024-11-29 22:25:57 +0900 ................................ Rule for TTL (output/ttl/hmdb-chebi.ttl) @@ -7786,12 +8015,12 @@ Rule for TTL (output/ttl/interpro-go.ttl) Investigating output/ttl/interpro-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 15:48:12 +0900 +timestamp: 2024-11-30 17:15:58 +0900 pre-requisites: --output/ttl/ () ---output/tsv/interpro-go.tsv (2024-10-06 20:21:42 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/interpro-go.tsv (2024-11-29 22:27:40 +0900) +latest-prerequisite time: 2024-11-29 22:27:40 +0900 ................................ Rule for TTL (output/ttl/interpro-pdb.ttl) @@ -7799,12 +8028,12 @@ Rule for TTL (output/ttl/interpro-pdb.ttl) Investigating output/ttl/interpro-pdb.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 15:48:24 +0900 +timestamp: 2024-11-30 17:16:10 +0900 pre-requisites: --output/ttl/ () ---output/tsv/interpro-pdb.tsv (2024-10-06 20:21:44 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/interpro-pdb.tsv (2024-11-29 22:27:43 +0900) +latest-prerequisite time: 2024-11-29 22:27:43 +0900 ................................ Rule for TTL (output/ttl/interpro-pfam.ttl) @@ -7812,12 +8041,12 @@ Rule for TTL (output/ttl/interpro-pfam.ttl) Investigating output/ttl/interpro-pfam.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 15:48:25 +0900 +timestamp: 2024-11-30 17:16:10 +0900 pre-requisites: --output/ttl/ () ---output/tsv/interpro-pfam.tsv (2024-10-06 20:21:46 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/interpro-pfam.tsv (2024-11-29 22:27:44 +0900) +latest-prerequisite time: 2024-11-29 22:27:44 +0900 ................................ Rule for TTL (output/ttl/interpro-prosite.ttl) @@ -7825,12 +8054,12 @@ Rule for TTL (output/ttl/interpro-prosite.ttl) Investigating output/ttl/interpro-prosite.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 15:48:25 +0900 +timestamp: 2024-11-30 17:16:11 +0900 pre-requisites: --output/ttl/ () ---output/tsv/interpro-prosite.tsv (2024-10-06 20:21:47 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/interpro-prosite.tsv (2024-11-29 22:27:46 +0900) +latest-prerequisite time: 2024-11-29 22:27:46 +0900 ................................ Rule for TTL (output/ttl/interpro-pubmed.ttl) @@ -7838,12 +8067,12 @@ Rule for TTL (output/ttl/interpro-pubmed.ttl) Investigating output/ttl/interpro-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 15:48:26 +0900 +timestamp: 2024-11-30 17:16:12 +0900 pre-requisites: --output/ttl/ () ---output/tsv/interpro-pubmed.tsv (2024-10-06 20:21:49 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/interpro-pubmed.tsv (2024-11-29 22:27:48 +0900) +latest-prerequisite time: 2024-11-29 22:27:48 +0900 ................................ Rule for TTL (output/ttl/interpro-reactome_pathway.ttl) @@ -7851,12 +8080,12 @@ Rule for TTL (output/ttl/interpro-reactome_pathway.ttl) Investigating output/ttl/interpro-reactome_pathway.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 15:48:30 +0900 +timestamp: 2024-11-30 17:16:15 +0900 pre-requisites: --output/ttl/ () ---output/tsv/interpro-reactome_pathway.tsv (2024-10-06 20:21:51 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/interpro-reactome_pathway.tsv (2024-11-29 22:27:50 +0900) +latest-prerequisite time: 2024-11-29 22:27:50 +0900 ................................ Rule for TTL (output/ttl/interpro-smart.ttl) @@ -7864,12 +8093,12 @@ Rule for TTL (output/ttl/interpro-smart.ttl) Investigating output/ttl/interpro-smart.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 15:48:30 +0900 +timestamp: 2024-11-30 17:16:16 +0900 pre-requisites: --output/ttl/ () ---output/tsv/interpro-smart.tsv (2024-10-06 20:21:53 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/interpro-smart.tsv (2024-11-29 22:27:51 +0900) +latest-prerequisite time: 2024-11-29 22:27:51 +0900 ................................ Rule for TTL (output/ttl/interpro-uniprot.ttl) @@ -7877,12 +8106,12 @@ Rule for TTL (output/ttl/interpro-uniprot.ttl) Investigating output/ttl/interpro-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 20:34:09 +0900 +timestamp: 2024-11-30 22:16:43 +0900 pre-requisites: --output/ttl/ () ---output/tsv/interpro-uniprot.tsv (2024-10-07 00:10:25 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/interpro-uniprot.tsv (2024-11-30 02:23:51 +0900) +latest-prerequisite time: 2024-11-30 02:23:51 +0900 ................................ Rule for TTL (output/ttl/lipidmaps-chebi.ttl) @@ -7955,12 +8184,12 @@ Rule for TTL (output/ttl/mgi_gene-ensembl_gene.ttl) Investigating output/ttl/mgi_gene-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:03:53 +0900 +timestamp: 2024-11-30 22:17:04 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_gene-ensembl_gene.tsv (2024-11-22 22:43:50 +0900) -latest-prerequisite time: 2024-11-22 22:43:50 +0900 +--output/tsv/mgi_gene-ensembl_gene.tsv (2024-11-30 02:24:16 +0900) +latest-prerequisite time: 2024-11-30 02:24:16 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-hgnc.ttl) @@ -7968,12 +8197,12 @@ Rule for TTL (output/ttl/mgi_gene-hgnc.ttl) Investigating output/ttl/mgi_gene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:03:54 +0900 +timestamp: 2024-11-30 22:17:04 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_gene-hgnc.tsv (2024-11-22 22:43:51 +0900) -latest-prerequisite time: 2024-11-22 22:43:51 +0900 +--output/tsv/mgi_gene-hgnc.tsv (2024-11-30 02:24:17 +0900) +latest-prerequisite time: 2024-11-30 02:24:17 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-mgi_allele.ttl) @@ -7981,12 +8210,12 @@ Rule for TTL (output/ttl/mgi_gene-mgi_allele.ttl) Investigating output/ttl/mgi_gene-mgi_allele.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:03:55 +0900 +timestamp: 2024-11-30 22:17:05 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_gene-mgi_allele.tsv (2024-11-22 22:43:52 +0900) -latest-prerequisite time: 2024-11-22 22:43:52 +0900 +--output/tsv/mgi_gene-mgi_allele.tsv (2024-11-30 02:24:18 +0900) +latest-prerequisite time: 2024-11-30 02:24:18 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-ncbigene.ttl) @@ -7994,12 +8223,12 @@ Rule for TTL (output/ttl/mgi_gene-ncbigene.ttl) Investigating output/ttl/mgi_gene-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:03:56 +0900 +timestamp: 2024-11-30 22:17:06 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_gene-ncbigene.tsv (2024-11-22 22:43:52 +0900) -latest-prerequisite time: 2024-11-22 22:43:52 +0900 +--output/tsv/mgi_gene-ncbigene.tsv (2024-11-30 02:24:19 +0900) +latest-prerequisite time: 2024-11-30 02:24:19 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-uniprot.ttl) @@ -8007,12 +8236,12 @@ Rule for TTL (output/ttl/mgi_gene-uniprot.ttl) Investigating output/ttl/mgi_gene-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:03:57 +0900 +timestamp: 2024-11-30 22:17:07 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_gene-uniprot.tsv (2024-11-22 22:43:53 +0900) -latest-prerequisite time: 2024-11-22 22:43:53 +0900 +--output/tsv/mgi_gene-uniprot.tsv (2024-11-30 02:24:19 +0900) +latest-prerequisite time: 2024-11-30 02:24:19 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-doid.ttl) @@ -8020,12 +8249,12 @@ Rule for TTL (output/ttl/mgi_genotype-doid.ttl) Investigating output/ttl/mgi_genotype-doid.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:03:57 +0900 +timestamp: 2024-11-30 22:17:07 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_genotype-doid.tsv (2024-11-22 22:43:55 +0900) -latest-prerequisite time: 2024-11-22 22:43:55 +0900 +--output/tsv/mgi_genotype-doid.tsv (2024-11-30 02:24:21 +0900) +latest-prerequisite time: 2024-11-30 02:24:21 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-mgi_allele.ttl) @@ -8033,12 +8262,12 @@ Rule for TTL (output/ttl/mgi_genotype-mgi_allele.ttl) Investigating output/ttl/mgi_genotype-mgi_allele.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:03:58 +0900 +timestamp: 2024-11-30 22:17:09 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_genotype-mgi_allele.tsv (2024-11-22 22:43:56 +0900) -latest-prerequisite time: 2024-11-22 22:43:56 +0900 +--output/tsv/mgi_genotype-mgi_allele.tsv (2024-11-30 02:24:22 +0900) +latest-prerequisite time: 2024-11-30 02:24:22 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-mp.ttl) @@ -8046,12 +8275,12 @@ Rule for TTL (output/ttl/mgi_genotype-mp.ttl) Investigating output/ttl/mgi_genotype-mp.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:04:01 +0900 +timestamp: 2024-11-30 22:17:12 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/mgi_genotype-mp.tsv (2024-11-22 22:43:58 +0900) -latest-prerequisite time: 2024-11-22 22:43:58 +0900 +--output/tsv/mgi_genotype-mp.tsv (2024-11-30 02:24:24 +0900) +latest-prerequisite time: 2024-11-30 02:24:24 +0900 ................................ Rule for TTL (output/ttl/mondo-doid.ttl) @@ -8137,12 +8366,12 @@ Rule for TTL (output/ttl/ncbigene-ensembl_gene.ttl) Investigating output/ttl/ncbigene-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:05:37 +0900 +timestamp: 2024-11-30 22:18:54 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-ensembl_gene.tsv (2024-11-22 22:44:37 +0900) -latest-prerequisite time: 2024-11-22 22:44:37 +0900 +--output/tsv/ncbigene-ensembl_gene.tsv (2024-11-30 02:25:01 +0900) +latest-prerequisite time: 2024-11-30 02:25:01 +0900 ................................ Rule for TTL (output/ttl/ncbigene-ensembl_protein.ttl) @@ -8150,12 +8379,12 @@ Rule for TTL (output/ttl/ncbigene-ensembl_protein.ttl) Investigating output/ttl/ncbigene-ensembl_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:07:30 +0900 +timestamp: 2024-11-30 22:20:47 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-ensembl_protein.tsv (2024-11-22 22:45:47 +0900) -latest-prerequisite time: 2024-11-22 22:45:47 +0900 +--output/tsv/ncbigene-ensembl_protein.tsv (2024-11-30 02:26:13 +0900) +latest-prerequisite time: 2024-11-30 02:26:13 +0900 ................................ Rule for TTL (output/ttl/ncbigene-ensembl_transcript.ttl) @@ -8163,12 +8392,12 @@ Rule for TTL (output/ttl/ncbigene-ensembl_transcript.ttl) Investigating output/ttl/ncbigene-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:10:11 +0900 +timestamp: 2024-11-30 22:22:52 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-ensembl_transcript.tsv (2024-11-22 22:46:50 +0900) -latest-prerequisite time: 2024-11-22 22:46:50 +0900 +--output/tsv/ncbigene-ensembl_transcript.tsv (2024-11-30 02:27:17 +0900) +latest-prerequisite time: 2024-11-30 02:27:17 +0900 ................................ Rule for TTL (output/ttl/ncbigene-flybase_gene.ttl) @@ -8176,12 +8405,12 @@ Rule for TTL (output/ttl/ncbigene-flybase_gene.ttl) Investigating output/ttl/ncbigene-flybase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:10:12 +0900 +timestamp: 2024-11-30 22:22:53 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-flybase_gene.tsv (2024-11-22 22:50:01 +0900) -latest-prerequisite time: 2024-11-22 22:50:01 +0900 +--output/tsv/ncbigene-flybase_gene.tsv (2024-11-30 02:28:39 +0900) +latest-prerequisite time: 2024-11-30 02:28:39 +0900 ................................ Rule for TTL (output/ttl/ncbigene-go.ttl) @@ -8189,12 +8418,12 @@ Rule for TTL (output/ttl/ncbigene-go.ttl) Investigating output/ttl/ncbigene-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:27:34 +0900 +timestamp: 2024-11-30 22:40:06 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-go.tsv (2024-11-22 23:06:38 +0900) -latest-prerequisite time: 2024-11-22 23:06:38 +0900 +--output/tsv/ncbigene-go.tsv (2024-11-30 02:34:01 +0900) +latest-prerequisite time: 2024-11-30 02:34:01 +0900 ................................ Rule for TTL (output/ttl/ncbigene-hgnc.ttl) @@ -8202,12 +8431,12 @@ Rule for TTL (output/ttl/ncbigene-hgnc.ttl) Investigating output/ttl/ncbigene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:27:39 +0900 +timestamp: 2024-11-30 22:40:09 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-hgnc.tsv (2024-11-22 23:06:40 +0900) -latest-prerequisite time: 2024-11-22 23:06:40 +0900 +--output/tsv/ncbigene-hgnc.tsv (2024-11-30 02:34:02 +0900) +latest-prerequisite time: 2024-11-30 02:34:02 +0900 ................................ Rule for TTL (output/ttl/ncbigene-mgi_gene.ttl) @@ -8215,12 +8444,12 @@ Rule for TTL (output/ttl/ncbigene-mgi_gene.ttl) Investigating output/ttl/ncbigene-mgi_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:27:40 +0900 +timestamp: 2024-11-30 22:40:10 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-mgi_gene.tsv (2024-11-22 23:07:52 +0900) -latest-prerequisite time: 2024-11-22 23:07:52 +0900 +--output/tsv/ncbigene-mgi_gene.tsv (2024-11-30 02:35:11 +0900) +latest-prerequisite time: 2024-11-30 02:35:11 +0900 ................................ Rule for TTL (output/ttl/ncbigene-mirbase.ttl) @@ -8228,12 +8457,12 @@ Rule for TTL (output/ttl/ncbigene-mirbase.ttl) Investigating output/ttl/ncbigene-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:27:40 +0900 +timestamp: 2024-11-30 22:40:10 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-mirbase.tsv (2024-11-22 23:09:45 +0900) -latest-prerequisite time: 2024-11-22 23:09:45 +0900 +--output/tsv/ncbigene-mirbase.tsv (2024-11-30 02:37:04 +0900) +latest-prerequisite time: 2024-11-30 02:37:04 +0900 ................................ Rule for TTL (output/ttl/ncbigene-omim_gene.ttl) @@ -8241,12 +8470,12 @@ Rule for TTL (output/ttl/ncbigene-omim_gene.ttl) Investigating output/ttl/ncbigene-omim_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:27:41 +0900 +timestamp: 2024-11-30 22:40:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-omim_gene.tsv (2024-11-22 23:09:46 +0900) -latest-prerequisite time: 2024-11-22 23:09:46 +0900 +--output/tsv/ncbigene-omim_gene.tsv (2024-11-30 02:37:05 +0900) +latest-prerequisite time: 2024-11-30 02:37:05 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_genomic.ttl) @@ -8254,12 +8483,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_genomic.ttl) Investigating output/ttl/ncbigene-refseq_genomic.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:27:43 +0900 +timestamp: 2024-11-30 22:40:13 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-refseq_genomic.tsv (2024-11-22 23:14:22 +0900) -latest-prerequisite time: 2024-11-22 23:14:22 +0900 +--output/tsv/ncbigene-refseq_genomic.tsv (2024-11-30 02:42:26 +0900) +latest-prerequisite time: 2024-11-30 02:42:26 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_protein.ttl) @@ -8267,12 +8496,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_protein.ttl) Investigating output/ttl/ncbigene-refseq_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:41:05 +0900 +timestamp: 2024-11-30 22:53:51 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-refseq_protein.tsv (2024-11-22 23:19:52 +0900) -latest-prerequisite time: 2024-11-22 23:19:52 +0900 +--output/tsv/ncbigene-refseq_protein.tsv (2024-11-30 02:47:27 +0900) +latest-prerequisite time: 2024-11-30 02:47:27 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_rna.ttl) @@ -8280,12 +8509,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_rna.ttl) Investigating output/ttl/ncbigene-refseq_rna.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:52:25 +0900 +timestamp: 2024-11-30 23:05:14 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-refseq_rna.tsv (2024-11-22 23:24:50 +0900) -latest-prerequisite time: 2024-11-22 23:24:50 +0900 +--output/tsv/ncbigene-refseq_rna.tsv (2024-11-30 02:51:41 +0900) +latest-prerequisite time: 2024-11-30 02:51:41 +0900 ................................ Rule for TTL (output/ttl/ncbigene-rgd.ttl) @@ -8293,12 +8522,12 @@ Rule for TTL (output/ttl/ncbigene-rgd.ttl) Investigating output/ttl/ncbigene-rgd.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:52:29 +0900 +timestamp: 2024-11-30 23:05:18 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-rgd.tsv (2024-11-22 23:25:59 +0900) -latest-prerequisite time: 2024-11-22 23:25:59 +0900 +--output/tsv/ncbigene-rgd.tsv (2024-11-30 02:52:49 +0900) +latest-prerequisite time: 2024-11-30 02:52:49 +0900 ................................ Rule for TTL (output/ttl/ncbigene-sgd.ttl) @@ -8306,12 +8535,12 @@ Rule for TTL (output/ttl/ncbigene-sgd.ttl) Investigating output/ttl/ncbigene-sgd.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:52:30 +0900 +timestamp: 2024-11-30 23:05:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-sgd.tsv (2024-11-22 23:27:16 +0900) -latest-prerequisite time: 2024-11-22 23:27:16 +0900 +--output/tsv/ncbigene-sgd.tsv (2024-11-30 02:54:07 +0900) +latest-prerequisite time: 2024-11-30 02:54:07 +0900 ................................ Rule for TTL (output/ttl/ncbigene-tair.ttl) @@ -8319,12 +8548,12 @@ Rule for TTL (output/ttl/ncbigene-tair.ttl) Investigating output/ttl/ncbigene-tair.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 03:52:30 +0900 +timestamp: 2024-11-30 23:05:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-tair.tsv (2024-11-22 23:28:35 +0900) -latest-prerequisite time: 2024-11-22 23:28:35 +0900 +--output/tsv/ncbigene-tair.tsv (2024-11-30 02:55:26 +0900) +latest-prerequisite time: 2024-11-30 02:55:26 +0900 ................................ Rule for TTL (output/ttl/ncbigene-taxonomy.ttl) @@ -8332,12 +8561,12 @@ Rule for TTL (output/ttl/ncbigene-taxonomy.ttl) Investigating output/ttl/ncbigene-taxonomy.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:01:10 +0900 +timestamp: 2024-11-30 23:13:41 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-taxonomy.tsv (2024-11-22 23:29:24 +0900) -latest-prerequisite time: 2024-11-22 23:29:24 +0900 +--output/tsv/ncbigene-taxonomy.tsv (2024-11-30 02:56:16 +0900) +latest-prerequisite time: 2024-11-30 02:56:16 +0900 ................................ Rule for TTL (output/ttl/ncbigene-vgnc.ttl) @@ -8345,12 +8574,12 @@ Rule for TTL (output/ttl/ncbigene-vgnc.ttl) Investigating output/ttl/ncbigene-vgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:01:14 +0900 +timestamp: 2024-11-30 23:13:44 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-vgnc.tsv (2024-11-22 23:30:42 +0900) -latest-prerequisite time: 2024-11-22 23:30:42 +0900 +--output/tsv/ncbigene-vgnc.tsv (2024-11-30 02:57:34 +0900) +latest-prerequisite time: 2024-11-30 02:57:34 +0900 ................................ Rule for TTL (output/ttl/ncbigene-wormbase_gene.ttl) @@ -8358,12 +8587,12 @@ Rule for TTL (output/ttl/ncbigene-wormbase_gene.ttl) Investigating output/ttl/ncbigene-wormbase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:01:14 +0900 +timestamp: 2024-11-30 23:13:45 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-wormbase_gene.tsv (2024-11-22 23:32:00 +0900) -latest-prerequisite time: 2024-11-22 23:32:00 +0900 +--output/tsv/ncbigene-wormbase_gene.tsv (2024-11-30 02:58:53 +0900) +latest-prerequisite time: 2024-11-30 02:58:53 +0900 ................................ Rule for TTL (output/ttl/ncbigene-xenbase_gene.ttl) @@ -8371,12 +8600,12 @@ Rule for TTL (output/ttl/ncbigene-xenbase_gene.ttl) Investigating output/ttl/ncbigene-xenbase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:01:15 +0900 +timestamp: 2024-11-30 23:13:45 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-xenbase_gene.tsv (2024-11-22 23:33:19 +0900) -latest-prerequisite time: 2024-11-22 23:33:19 +0900 +--output/tsv/ncbigene-xenbase_gene.tsv (2024-11-30 03:00:11 +0900) +latest-prerequisite time: 2024-11-30 03:00:11 +0900 ................................ Rule for TTL (output/ttl/ncbigene-zfin_gene.ttl) @@ -8384,12 +8613,12 @@ Rule for TTL (output/ttl/ncbigene-zfin_gene.ttl) Investigating output/ttl/ncbigene-zfin_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:01:15 +0900 +timestamp: 2024-11-30 23:13:46 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/ncbigene-zfin_gene.tsv (2024-11-22 23:34:37 +0900) -latest-prerequisite time: 2024-11-22 23:34:37 +0900 +--output/tsv/ncbigene-zfin_gene.tsv (2024-11-30 03:01:29 +0900) +latest-prerequisite time: 2024-11-30 03:01:29 +0900 ................................ Rule for TTL (output/ttl/oma_protein-ensembl_gene.ttl) @@ -8449,12 +8678,12 @@ Rule for TTL (output/ttl/pmc-pubmed.ttl) Investigating output/ttl/pmc-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:02:59 +0900 +timestamp: 2024-11-30 23:15:22 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/pmc-pubmed.tsv (2024-11-22 23:40:38 +0900) -latest-prerequisite time: 2024-11-22 23:40:38 +0900 +--output/tsv/pmc-pubmed.tsv (2024-11-30 03:07:41 +0900) +latest-prerequisite time: 2024-11-30 03:07:41 +0900 ................................ Rule for TTL (output/ttl/prosite-prosite_prorule.ttl) @@ -8462,12 +8691,12 @@ Rule for TTL (output/ttl/prosite-prosite_prorule.ttl) Investigating output/ttl/prosite-prosite_prorule.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 22:25:33 +0900 +timestamp: 2024-11-30 23:15:23 +0900 pre-requisites: --output/ttl/ () ---output/tsv/prosite-prosite_prorule.tsv (2024-10-07 01:37:39 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/prosite-prosite_prorule.tsv (2024-11-30 03:07:42 +0900) +latest-prerequisite time: 2024-11-30 03:07:42 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-chebi.ttl) @@ -8475,12 +8704,12 @@ Rule for TTL (output/ttl/reactome_pathway-chebi.ttl) Investigating output/ttl/reactome_pathway-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:45:15 +0900 +timestamp: 2024-11-30 23:58:46 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_pathway-chebi.tsv (2024-11-22 23:49:52 +0900) -latest-prerequisite time: 2024-11-22 23:49:52 +0900 +--output/tsv/reactome_pathway-chebi.tsv (2024-11-30 03:16:18 +0900) +latest-prerequisite time: 2024-11-30 03:16:18 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-go.ttl) @@ -8488,12 +8717,12 @@ Rule for TTL (output/ttl/reactome_pathway-go.ttl) Investigating output/ttl/reactome_pathway-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:45:16 +0900 +timestamp: 2024-11-30 23:58:46 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_pathway-go.tsv (2024-11-22 23:49:53 +0900) -latest-prerequisite time: 2024-11-22 23:49:53 +0900 +--output/tsv/reactome_pathway-go.tsv (2024-11-30 03:16:18 +0900) +latest-prerequisite time: 2024-11-30 03:16:18 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-iuphar_ligand.ttl) @@ -8501,12 +8730,12 @@ Rule for TTL (output/ttl/reactome_pathway-iuphar_ligand.ttl) Investigating output/ttl/reactome_pathway-iuphar_ligand.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:45:16 +0900 +timestamp: 2024-11-30 23:58:47 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_pathway-iuphar_ligand.tsv (2024-11-22 23:49:53 +0900) -latest-prerequisite time: 2024-11-22 23:49:53 +0900 +--output/tsv/reactome_pathway-iuphar_ligand.tsv (2024-11-30 03:16:19 +0900) +latest-prerequisite time: 2024-11-30 03:16:19 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-mirbase.ttl) @@ -8514,12 +8743,12 @@ Rule for TTL (output/ttl/reactome_pathway-mirbase.ttl) Investigating output/ttl/reactome_pathway-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:45:17 +0900 +timestamp: 2024-11-30 23:58:47 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_pathway-mirbase.tsv (2024-11-22 23:49:53 +0900) -latest-prerequisite time: 2024-11-22 23:49:53 +0900 +--output/tsv/reactome_pathway-mirbase.tsv (2024-11-30 03:16:19 +0900) +latest-prerequisite time: 2024-11-30 03:16:19 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-reactome_reaction.ttl) @@ -8527,12 +8756,12 @@ Rule for TTL (output/ttl/reactome_pathway-reactome_reaction.ttl) Investigating output/ttl/reactome_pathway-reactome_reaction.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:45:21 +0900 +timestamp: 2024-11-30 23:58:50 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_pathway-reactome_reaction.tsv (2024-11-22 23:49:54 +0900) -latest-prerequisite time: 2024-11-22 23:49:54 +0900 +--output/tsv/reactome_pathway-reactome_reaction.tsv (2024-11-30 03:16:20 +0900) +latest-prerequisite time: 2024-11-30 03:16:20 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-uniprot.ttl) @@ -8540,12 +8769,12 @@ Rule for TTL (output/ttl/reactome_pathway-uniprot.ttl) Investigating output/ttl/reactome_pathway-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:45:28 +0900 +timestamp: 2024-11-30 23:58:57 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_pathway-uniprot.tsv (2024-11-22 23:49:56 +0900) -latest-prerequisite time: 2024-11-22 23:49:56 +0900 +--output/tsv/reactome_pathway-uniprot.tsv (2024-11-30 03:16:23 +0900) +latest-prerequisite time: 2024-11-30 03:16:23 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-chebi.ttl) @@ -8553,12 +8782,12 @@ Rule for TTL (output/ttl/reactome_reaction-chebi.ttl) Investigating output/ttl/reactome_reaction-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:45:30 +0900 +timestamp: 2024-11-30 23:58:59 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_reaction-chebi.tsv (2024-11-22 23:49:56 +0900) -latest-prerequisite time: 2024-11-22 23:49:56 +0900 +--output/tsv/reactome_reaction-chebi.tsv (2024-11-30 03:16:24 +0900) +latest-prerequisite time: 2024-11-30 03:16:24 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-go.ttl) @@ -8566,12 +8795,12 @@ Rule for TTL (output/ttl/reactome_reaction-go.ttl) Investigating output/ttl/reactome_reaction-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:45:30 +0900 +timestamp: 2024-11-30 23:58:59 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_reaction-go.tsv (2024-11-22 23:49:57 +0900) -latest-prerequisite time: 2024-11-22 23:49:57 +0900 +--output/tsv/reactome_reaction-go.tsv (2024-11-30 03:16:25 +0900) +latest-prerequisite time: 2024-11-30 03:16:25 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-iuphar_ligand.ttl) @@ -8579,12 +8808,12 @@ Rule for TTL (output/ttl/reactome_reaction-iuphar_ligand.ttl) Investigating output/ttl/reactome_reaction-iuphar_ligand.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:45:30 +0900 +timestamp: 2024-11-30 23:58:59 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_reaction-iuphar_ligand.tsv (2024-11-22 23:49:57 +0900) -latest-prerequisite time: 2024-11-22 23:49:57 +0900 +--output/tsv/reactome_reaction-iuphar_ligand.tsv (2024-11-30 03:16:25 +0900) +latest-prerequisite time: 2024-11-30 03:16:25 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-mirbase.ttl) @@ -8592,12 +8821,12 @@ Rule for TTL (output/ttl/reactome_reaction-mirbase.ttl) Investigating output/ttl/reactome_reaction-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:45:31 +0900 +timestamp: 2024-11-30 23:59:00 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_reaction-mirbase.tsv (2024-11-22 23:49:57 +0900) -latest-prerequisite time: 2024-11-22 23:49:57 +0900 +--output/tsv/reactome_reaction-mirbase.tsv (2024-11-30 03:16:25 +0900) +latest-prerequisite time: 2024-11-30 03:16:25 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-uniprot.ttl) @@ -8605,12 +8834,12 @@ Rule for TTL (output/ttl/reactome_reaction-uniprot.ttl) Investigating output/ttl/reactome_reaction-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 04:45:36 +0900 +timestamp: 2024-11-30 23:59:05 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/reactome_reaction-uniprot.tsv (2024-11-22 23:49:58 +0900) -latest-prerequisite time: 2024-11-22 23:49:58 +0900 +--output/tsv/reactome_reaction-uniprot.tsv (2024-11-30 03:16:26 +0900) +latest-prerequisite time: 2024-11-30 03:16:26 +0900 ................................ Rule for TTL (output/ttl/refseq_protein-uniprot.ttl) @@ -8618,12 +8847,12 @@ Rule for TTL (output/ttl/refseq_protein-uniprot.ttl) Investigating output/ttl/refseq_protein-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 05:35:19 +0900 +timestamp: 2024-12-01 00:47:31 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/refseq_protein-uniprot.tsv (2024-11-22 23:56:25 +0900) -latest-prerequisite time: 2024-11-22 23:56:25 +0900 +--output/tsv/refseq_protein-uniprot.tsv (2024-11-30 03:21:56 +0900) +latest-prerequisite time: 2024-11-30 03:21:56 +0900 ................................ Rule for TTL (output/ttl/refseq_rna-dbsnp.ttl) @@ -8722,12 +8951,12 @@ Rule for TTL (output/ttl/rhea-chebi.ttl) Investigating output/ttl/rhea-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:04:21 +0900 +timestamp: 2024-12-01 00:47:36 +0900 pre-requisites: --output/ttl/ () ---output/tsv/rhea-chebi.tsv (2024-10-07 01:54:59 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/rhea-chebi.tsv (2024-11-30 03:21:57 +0900) +latest-prerequisite time: 2024-11-30 03:21:57 +0900 ................................ Rule for TTL (output/ttl/rhea-ec.ttl) @@ -8735,12 +8964,12 @@ Rule for TTL (output/ttl/rhea-ec.ttl) Investigating output/ttl/rhea-ec.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:04:21 +0900 +timestamp: 2024-12-01 00:47:36 +0900 pre-requisites: --output/ttl/ () ---output/tsv/rhea-ec.tsv (2024-10-07 01:55:00 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/rhea-ec.tsv (2024-11-30 03:21:58 +0900) +latest-prerequisite time: 2024-11-30 03:21:58 +0900 ................................ Rule for TTL (output/ttl/rhea-go.ttl) @@ -8748,12 +8977,12 @@ Rule for TTL (output/ttl/rhea-go.ttl) Investigating output/ttl/rhea-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:04:22 +0900 +timestamp: 2024-12-01 00:47:36 +0900 pre-requisites: --output/ttl/ () ---output/tsv/rhea-go.tsv (2024-10-07 01:55:00 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/rhea-go.tsv (2024-11-30 03:21:58 +0900) +latest-prerequisite time: 2024-11-30 03:21:58 +0900 ................................ Rule for TTL (output/ttl/rhea-pubmed.ttl) @@ -8761,12 +8990,12 @@ Rule for TTL (output/ttl/rhea-pubmed.ttl) Investigating output/ttl/rhea-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:04:23 +0900 +timestamp: 2024-12-01 00:47:37 +0900 pre-requisites: --output/ttl/ () ---output/tsv/rhea-pubmed.tsv (2024-10-07 01:55:02 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/rhea-pubmed.tsv (2024-11-30 03:21:58 +0900) +latest-prerequisite time: 2024-11-30 03:21:58 +0900 ................................ Rule for TTL (output/ttl/rhea-reactome_reaction.ttl) @@ -8774,12 +9003,12 @@ Rule for TTL (output/ttl/rhea-reactome_reaction.ttl) Investigating output/ttl/rhea-reactome_reaction.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:04:23 +0900 +timestamp: 2024-12-01 00:47:38 +0900 pre-requisites: --output/ttl/ () ---output/tsv/rhea-reactome_reaction.tsv (2024-10-07 01:55:03 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/rhea-reactome_reaction.tsv (2024-11-30 03:21:59 +0900) +latest-prerequisite time: 2024-11-30 03:21:59 +0900 ................................ Rule for TTL (output/ttl/rhea-uniprot.ttl) @@ -8787,12 +9016,12 @@ Rule for TTL (output/ttl/rhea-uniprot.ttl) Investigating output/ttl/rhea-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:10:00 +0900 +timestamp: 2024-12-01 00:54:01 +0900 pre-requisites: --output/ttl/ () ---output/tsv/rhea-uniprot.tsv (2024-10-07 01:55:41 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/rhea-uniprot.tsv (2024-11-30 03:22:39 +0900) +latest-prerequisite time: 2024-11-30 03:22:39 +0900 ................................ Rule for TTL (output/ttl/sra_accession-bioproject.ttl) @@ -8800,12 +9029,12 @@ Rule for TTL (output/ttl/sra_accession-bioproject.ttl) Investigating output/ttl/sra_accession-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 05:35:28 +0900 +timestamp: 2024-12-01 00:54:07 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_accession-bioproject.tsv (2024-11-22 23:58:59 +0900) -latest-prerequisite time: 2024-11-22 23:58:59 +0900 +--output/tsv/sra_accession-bioproject.tsv (2024-11-30 03:25:15 +0900) +latest-prerequisite time: 2024-11-30 03:25:15 +0900 ................................ Rule for TTL (output/ttl/sra_accession-biosample.ttl) @@ -8813,12 +9042,12 @@ Rule for TTL (output/ttl/sra_accession-biosample.ttl) Investigating output/ttl/sra_accession-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 05:40:56 +0900 +timestamp: 2024-12-01 01:00:08 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_accession-biosample.tsv (2024-11-23 00:07:17 +0900) -latest-prerequisite time: 2024-11-23 00:07:17 +0900 +--output/tsv/sra_accession-biosample.tsv (2024-11-30 03:33:39 +0900) +latest-prerequisite time: 2024-11-30 03:33:39 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_analysis.ttl) @@ -8826,12 +9055,12 @@ Rule for TTL (output/ttl/sra_accession-sra_analysis.ttl) Investigating output/ttl/sra_accession-sra_analysis.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 05:40:59 +0900 +timestamp: 2024-12-01 01:00:13 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_accession-sra_analysis.tsv (2024-11-23 00:08:26 +0900) -latest-prerequisite time: 2024-11-23 00:08:26 +0900 +--output/tsv/sra_accession-sra_analysis.tsv (2024-11-30 03:34:49 +0900) +latest-prerequisite time: 2024-11-30 03:34:49 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_experiment.ttl) @@ -8839,12 +9068,12 @@ Rule for TTL (output/ttl/sra_accession-sra_experiment.ttl) Investigating output/ttl/sra_accession-sra_experiment.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 05:47:17 +0900 +timestamp: 2024-12-01 01:07:10 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_accession-sra_experiment.tsv (2024-11-23 00:15:19 +0900) -latest-prerequisite time: 2024-11-23 00:15:19 +0900 +--output/tsv/sra_accession-sra_experiment.tsv (2024-11-30 03:41:48 +0900) +latest-prerequisite time: 2024-11-30 03:41:48 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_project.ttl) @@ -8852,12 +9081,12 @@ Rule for TTL (output/ttl/sra_accession-sra_project.ttl) Investigating output/ttl/sra_accession-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 05:47:23 +0900 +timestamp: 2024-12-01 01:07:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_accession-sra_project.tsv (2024-11-23 00:16:28 +0900) -latest-prerequisite time: 2024-11-23 00:16:28 +0900 +--output/tsv/sra_accession-sra_project.tsv (2024-11-30 03:42:59 +0900) +latest-prerequisite time: 2024-11-30 03:42:59 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_run.ttl) @@ -8865,12 +9094,12 @@ Rule for TTL (output/ttl/sra_accession-sra_run.ttl) Investigating output/ttl/sra_accession-sra_run.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 05:53:36 +0900 +timestamp: 2024-12-01 01:13:46 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_accession-sra_run.tsv (2024-11-23 00:24:23 +0900) -latest-prerequisite time: 2024-11-23 00:24:23 +0900 +--output/tsv/sra_accession-sra_run.tsv (2024-11-30 03:50:55 +0900) +latest-prerequisite time: 2024-11-30 03:50:55 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_sample.ttl) @@ -8878,12 +9107,12 @@ Rule for TTL (output/ttl/sra_accession-sra_sample.ttl) Investigating output/ttl/sra_accession-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 05:58:34 +0900 +timestamp: 2024-12-01 01:18:42 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_accession-sra_sample.tsv (2024-11-23 00:31:15 +0900) -latest-prerequisite time: 2024-11-23 00:31:15 +0900 +--output/tsv/sra_accession-sra_sample.tsv (2024-11-30 03:57:37 +0900) +latest-prerequisite time: 2024-11-30 03:57:37 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-bioproject.ttl) @@ -8891,12 +9120,12 @@ Rule for TTL (output/ttl/sra_experiment-bioproject.ttl) Investigating output/ttl/sra_experiment-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:04:01 +0900 +timestamp: 2024-12-01 01:23:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_experiment-bioproject.tsv (2024-11-23 00:35:19 +0900) -latest-prerequisite time: 2024-11-23 00:35:19 +0900 +--output/tsv/sra_experiment-bioproject.tsv (2024-11-30 04:01:17 +0900) +latest-prerequisite time: 2024-11-30 04:01:17 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-biosample.ttl) @@ -8904,12 +9133,12 @@ Rule for TTL (output/ttl/sra_experiment-biosample.ttl) Investigating output/ttl/sra_experiment-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:09:16 +0900 +timestamp: 2024-12-01 01:29:00 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_experiment-biosample.tsv (2024-11-23 00:38:59 +0900) -latest-prerequisite time: 2024-11-23 00:38:59 +0900 +--output/tsv/sra_experiment-biosample.tsv (2024-11-30 04:04:50 +0900) +latest-prerequisite time: 2024-11-30 04:04:50 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-sra_project.ttl) @@ -8917,12 +9146,12 @@ Rule for TTL (output/ttl/sra_experiment-sra_project.ttl) Investigating output/ttl/sra_experiment-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:14:38 +0900 +timestamp: 2024-12-01 01:34:26 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_experiment-sra_project.tsv (2024-11-23 00:42:04 +0900) -latest-prerequisite time: 2024-11-23 00:42:04 +0900 +--output/tsv/sra_experiment-sra_project.tsv (2024-11-30 04:07:54 +0900) +latest-prerequisite time: 2024-11-30 04:07:54 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-sra_sample.ttl) @@ -8930,12 +9159,12 @@ Rule for TTL (output/ttl/sra_experiment-sra_sample.ttl) Investigating output/ttl/sra_experiment-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:20:14 +0900 +timestamp: 2024-12-01 01:39:55 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_experiment-sra_sample.tsv (2024-11-23 00:45:31 +0900) -latest-prerequisite time: 2024-11-23 00:45:31 +0900 +--output/tsv/sra_experiment-sra_sample.tsv (2024-11-30 04:10:52 +0900) +latest-prerequisite time: 2024-11-30 04:10:52 +0900 ................................ Rule for TTL (output/ttl/sra_project-bioproject.ttl) @@ -8943,12 +9172,12 @@ Rule for TTL (output/ttl/sra_project-bioproject.ttl) Investigating output/ttl/sra_project-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:20:19 +0900 +timestamp: 2024-12-01 01:40:01 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_project-bioproject.tsv (2024-11-23 00:46:43 +0900) -latest-prerequisite time: 2024-11-23 00:46:43 +0900 +--output/tsv/sra_project-bioproject.tsv (2024-11-30 04:12:02 +0900) +latest-prerequisite time: 2024-11-30 04:12:02 +0900 ................................ Rule for TTL (output/ttl/sra_run-bioproject.ttl) @@ -8956,12 +9185,12 @@ Rule for TTL (output/ttl/sra_run-bioproject.ttl) Investigating output/ttl/sra_run-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:25:09 +0900 +timestamp: 2024-12-01 01:45:23 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_run-bioproject.tsv (2024-11-23 00:50:59 +0900) -latest-prerequisite time: 2024-11-23 00:50:59 +0900 +--output/tsv/sra_run-bioproject.tsv (2024-11-30 04:16:09 +0900) +latest-prerequisite time: 2024-11-30 04:16:09 +0900 ................................ Rule for TTL (output/ttl/sra_run-biosample.ttl) @@ -8969,12 +9198,12 @@ Rule for TTL (output/ttl/sra_run-biosample.ttl) Investigating output/ttl/sra_run-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:30:22 +0900 +timestamp: 2024-12-01 01:50:50 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_run-biosample.tsv (2024-11-23 00:55:14 +0900) -latest-prerequisite time: 2024-11-23 00:55:14 +0900 +--output/tsv/sra_run-biosample.tsv (2024-11-30 04:20:09 +0900) +latest-prerequisite time: 2024-11-30 04:20:09 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_experiment.ttl) @@ -8982,12 +9211,12 @@ Rule for TTL (output/ttl/sra_run-sra_experiment.ttl) Investigating output/ttl/sra_run-sra_experiment.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:36:19 +0900 +timestamp: 2024-12-01 01:56:46 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_run-sra_experiment.tsv (2024-11-23 00:58:31 +0900) -latest-prerequisite time: 2024-11-23 00:58:31 +0900 +--output/tsv/sra_run-sra_experiment.tsv (2024-11-30 04:23:16 +0900) +latest-prerequisite time: 2024-11-30 04:23:16 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_project.ttl) @@ -8995,12 +9224,12 @@ Rule for TTL (output/ttl/sra_run-sra_project.ttl) Investigating output/ttl/sra_run-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:41:02 +0900 +timestamp: 2024-12-01 02:01:33 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_run-sra_project.tsv (2024-11-23 01:02:11 +0900) -latest-prerequisite time: 2024-11-23 01:02:11 +0900 +--output/tsv/sra_run-sra_project.tsv (2024-11-30 04:26:39 +0900) +latest-prerequisite time: 2024-11-30 04:26:39 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_sample.ttl) @@ -9008,12 +9237,12 @@ Rule for TTL (output/ttl/sra_run-sra_sample.ttl) Investigating output/ttl/sra_run-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:46:34 +0900 +timestamp: 2024-12-01 02:06:52 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_run-sra_sample.tsv (2024-11-23 01:05:36 +0900) -latest-prerequisite time: 2024-11-23 01:05:36 +0900 +--output/tsv/sra_run-sra_sample.tsv (2024-11-30 04:29:54 +0900) +latest-prerequisite time: 2024-11-30 04:29:54 +0900 ................................ Rule for TTL (output/ttl/sra_sample-biosample.ttl) @@ -9021,12 +9250,12 @@ Rule for TTL (output/ttl/sra_sample-biosample.ttl) Investigating output/ttl/sra_sample-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:51:35 +0900 +timestamp: 2024-12-01 02:11:56 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/sra_sample-biosample.tsv (2024-11-23 01:09:08 +0900) -latest-prerequisite time: 2024-11-23 01:09:08 +0900 +--output/tsv/sra_sample-biosample.tsv (2024-11-30 04:33:06 +0900) +latest-prerequisite time: 2024-11-30 04:33:06 +0900 ................................ Rule for TTL (output/ttl/swisslipids-chebi.ttl) @@ -9034,12 +9263,12 @@ Rule for TTL (output/ttl/swisslipids-chebi.ttl) Investigating output/ttl/swisslipids-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:51:37 +0900 +timestamp: 2024-12-01 02:11:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/swisslipids-chebi.tsv (2024-11-23 01:10:44 +0900) -latest-prerequisite time: 2024-11-23 01:10:44 +0900 +--output/tsv/swisslipids-chebi.tsv (2024-11-30 04:33:20 +0900) +latest-prerequisite time: 2024-11-30 04:33:20 +0900 ................................ Rule for TTL (output/ttl/swisslipids-hmdb.ttl) @@ -9047,12 +9276,12 @@ Rule for TTL (output/ttl/swisslipids-hmdb.ttl) Investigating output/ttl/swisslipids-hmdb.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:51:37 +0900 +timestamp: 2024-12-01 02:11:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/swisslipids-hmdb.tsv (2024-11-23 01:10:57 +0900) -latest-prerequisite time: 2024-11-23 01:10:57 +0900 +--output/tsv/swisslipids-hmdb.tsv (2024-11-30 04:33:34 +0900) +latest-prerequisite time: 2024-11-30 04:33:34 +0900 ................................ Rule for TTL (output/ttl/swisslipids-inchi_key.ttl) @@ -9060,12 +9289,12 @@ Rule for TTL (output/ttl/swisslipids-inchi_key.ttl) Investigating output/ttl/swisslipids-inchi_key.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:51:48 +0900 +timestamp: 2024-12-01 02:12:04 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/swisslipids-inchi_key.tsv (2024-11-23 01:11:09 +0900) -latest-prerequisite time: 2024-11-23 01:11:09 +0900 +--output/tsv/swisslipids-inchi_key.tsv (2024-11-30 04:33:46 +0900) +latest-prerequisite time: 2024-11-30 04:33:46 +0900 ................................ Rule for TTL (output/ttl/taxonomy-pubmed.ttl) @@ -9073,12 +9302,12 @@ Rule for TTL (output/ttl/taxonomy-pubmed.ttl) Investigating output/ttl/taxonomy-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 06:51:49 +0900 +timestamp: 2024-12-01 02:12:05 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/taxonomy-pubmed.tsv (2024-11-23 01:11:10 +0900) -latest-prerequisite time: 2024-11-23 01:11:10 +0900 +--output/tsv/taxonomy-pubmed.tsv (2024-11-30 04:33:47 +0900) +latest-prerequisite time: 2024-11-30 04:33:47 +0900 ................................ Rule for TTL (output/ttl/uniprot-chembl_target.ttl) @@ -9086,12 +9315,12 @@ Rule for TTL (output/ttl/uniprot-chembl_target.ttl) Investigating output/ttl/uniprot-chembl_target.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 05:31:17 +0900 +timestamp: 2024-12-01 06:29:05 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-chembl_target.tsv (2024-10-07 03:49:45 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-chembl_target.tsv (2024-11-30 05:19:45 +0900) +latest-prerequisite time: 2024-11-30 05:19:45 +0900 ................................ Rule for TTL (output/ttl/uniprot-dbsnp.ttl) @@ -9099,12 +9328,12 @@ Rule for TTL (output/ttl/uniprot-dbsnp.ttl) Investigating output/ttl/uniprot-dbsnp.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 05:31:17 +0900 +timestamp: 2024-12-01 06:29:06 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-dbsnp.tsv (2024-10-07 03:50:14 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-dbsnp.tsv (2024-11-30 05:20:10 +0900) +latest-prerequisite time: 2024-11-30 05:20:10 +0900 ................................ Rule for TTL (output/ttl/uniprot-ec.ttl) @@ -9112,12 +9341,12 @@ Rule for TTL (output/ttl/uniprot-ec.ttl) Investigating output/ttl/uniprot-ec.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 05:37:07 +0900 +timestamp: 2024-12-01 06:35:13 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-ec.tsv (2024-10-07 04:41:06 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-ec.tsv (2024-11-30 05:55:03 +0900) +latest-prerequisite time: 2024-11-30 05:55:03 +0900 ................................ Rule for TTL (output/ttl/uniprot-ensembl_gene.ttl) @@ -9125,12 +9354,12 @@ Rule for TTL (output/ttl/uniprot-ensembl_gene.ttl) Investigating output/ttl/uniprot-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 05:38:34 +0900 +timestamp: 2024-12-01 06:36:42 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-ensembl_gene.tsv (2024-10-07 05:28:14 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-ensembl_gene.tsv (2024-11-30 06:42:45 +0900) +latest-prerequisite time: 2024-11-30 06:42:45 +0900 ................................ Rule for TTL (output/ttl/uniprot-ensembl_protein.ttl) @@ -9138,12 +9367,12 @@ Rule for TTL (output/ttl/uniprot-ensembl_protein.ttl) Investigating output/ttl/uniprot-ensembl_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 05:40:03 +0900 +timestamp: 2024-12-01 06:38:10 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-ensembl_protein.tsv (2024-10-07 06:14:28 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-ensembl_protein.tsv (2024-11-30 07:29:45 +0900) +latest-prerequisite time: 2024-11-30 07:29:45 +0900 ................................ Rule for TTL (output/ttl/uniprot-ensembl_transcript.ttl) @@ -9151,12 +9380,12 @@ Rule for TTL (output/ttl/uniprot-ensembl_transcript.ttl) Investigating output/ttl/uniprot-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 05:41:33 +0900 +timestamp: 2024-12-01 06:39:37 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-ensembl_transcript.tsv (2024-10-07 07:01:01 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-ensembl_transcript.tsv (2024-11-30 08:16:54 +0900) +latest-prerequisite time: 2024-11-30 08:16:54 +0900 ................................ Rule for TTL (output/ttl/uniprot-go.ttl) @@ -9164,12 +9393,12 @@ Rule for TTL (output/ttl/uniprot-go.ttl) Investigating output/ttl/uniprot-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 08:19:04 +0900 +timestamp: 2024-12-01 09:56:31 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-go.tsv (2024-10-07 07:19:03 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-go.tsv (2024-11-30 08:36:07 +0900) +latest-prerequisite time: 2024-11-30 08:36:07 +0900 ................................ Rule for TTL (output/ttl/uniprot-hgnc.ttl) @@ -9177,12 +9406,12 @@ Rule for TTL (output/ttl/uniprot-hgnc.ttl) Investigating output/ttl/uniprot-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 08:19:20 +0900 +timestamp: 2024-12-01 09:56:46 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-hgnc.tsv (2024-10-07 07:57:17 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-hgnc.tsv (2024-11-30 09:14:30 +0900) +latest-prerequisite time: 2024-11-30 09:14:30 +0900 ................................ Rule for TTL (output/ttl/uniprot-insdc.ttl) @@ -9190,12 +9419,12 @@ Rule for TTL (output/ttl/uniprot-insdc.ttl) Investigating output/ttl/uniprot-insdc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 09:38:37 +0900 +timestamp: 2024-12-01 11:25:43 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-insdc.tsv (2024-10-07 08:43:29 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-insdc.tsv (2024-11-30 10:00:39 +0900) +latest-prerequisite time: 2024-11-30 10:00:39 +0900 ................................ Rule for TTL (output/ttl/uniprot-intact.ttl) @@ -9203,12 +9432,12 @@ Rule for TTL (output/ttl/uniprot-intact.ttl) Investigating output/ttl/uniprot-intact.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 09:38:46 +0900 +timestamp: 2024-12-01 11:25:56 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-intact.tsv (2024-10-07 08:45:13 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-intact.tsv (2024-11-30 10:02:02 +0900) +latest-prerequisite time: 2024-11-30 10:02:02 +0900 ................................ Rule for TTL (output/ttl/uniprot-ncbigene.ttl) @@ -9216,12 +9445,12 @@ Rule for TTL (output/ttl/uniprot-ncbigene.ttl) Investigating output/ttl/uniprot-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 09:40:18 +0900 +timestamp: 2024-12-01 11:27:38 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-ncbigene.tsv (2024-10-07 09:23:48 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-ncbigene.tsv (2024-11-30 10:41:09 +0900) +latest-prerequisite time: 2024-11-30 10:41:09 +0900 ................................ Rule for TTL (output/ttl/uniprot-oma_group.ttl) @@ -9229,12 +9458,12 @@ Rule for TTL (output/ttl/uniprot-oma_group.ttl) Investigating output/ttl/uniprot-oma_group.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 09:41:14 +0900 +timestamp: 2024-12-01 11:28:36 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-oma_group.tsv (2024-10-07 10:02:59 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-oma_group.tsv (2024-11-30 11:20:53 +0900) +latest-prerequisite time: 2024-11-30 11:20:53 +0900 ................................ Rule for TTL (output/ttl/uniprot-omim_gene.ttl) @@ -9242,12 +9471,12 @@ Rule for TTL (output/ttl/uniprot-omim_gene.ttl) Investigating output/ttl/uniprot-omim_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 09:41:14 +0900 +timestamp: 2024-12-01 11:28:37 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-omim_gene.tsv (2024-10-07 10:03:07 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-omim_gene.tsv (2024-11-30 11:21:01 +0900) +latest-prerequisite time: 2024-11-30 11:21:01 +0900 ................................ Rule for TTL (output/ttl/uniprot-omim_phenotype.ttl) @@ -9255,12 +9484,12 @@ Rule for TTL (output/ttl/uniprot-omim_phenotype.ttl) Investigating output/ttl/uniprot-omim_phenotype.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 09:41:15 +0900 +timestamp: 2024-12-01 11:28:37 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-omim_phenotype.tsv (2024-10-07 10:03:10 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-omim_phenotype.tsv (2024-11-30 11:21:04 +0900) +latest-prerequisite time: 2024-11-30 11:21:04 +0900 ................................ Rule for TTL (output/ttl/uniprot-orphanet_phenotype.ttl) @@ -9268,12 +9497,12 @@ Rule for TTL (output/ttl/uniprot-orphanet_phenotype.ttl) Investigating output/ttl/uniprot-orphanet_phenotype.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 09:41:15 +0900 +timestamp: 2024-12-01 11:28:37 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-orphanet_phenotype.tsv (2024-10-07 10:49:35 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-orphanet_phenotype.tsv (2024-11-30 12:07:53 +0900) +latest-prerequisite time: 2024-11-30 12:07:53 +0900 ................................ Rule for TTL (output/ttl/uniprot-pdb.ttl) @@ -9281,12 +9510,12 @@ Rule for TTL (output/ttl/uniprot-pdb.ttl) Investigating output/ttl/uniprot-pdb.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 09:41:18 +0900 +timestamp: 2024-12-01 11:28:41 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-pdb.tsv (2024-10-07 11:28:15 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-pdb.tsv (2024-11-30 12:47:53 +0900) +latest-prerequisite time: 2024-11-30 12:47:53 +0900 ................................ Rule for TTL (output/ttl/uniprot-reactome_pathway.ttl) @@ -9294,12 +9523,12 @@ Rule for TTL (output/ttl/uniprot-reactome_pathway.ttl) Investigating output/ttl/uniprot-reactome_pathway.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 09:41:21 +0900 +timestamp: 2024-12-01 11:28:43 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-reactome_pathway.tsv (2024-10-07 12:14:19 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-reactome_pathway.tsv (2024-11-30 13:34:50 +0900) +latest-prerequisite time: 2024-11-30 13:34:50 +0900 ................................ Rule for TTL (output/ttl/uniprot-refseq_protein.ttl) @@ -9307,12 +9536,12 @@ Rule for TTL (output/ttl/uniprot-refseq_protein.ttl) Investigating output/ttl/uniprot-refseq_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 09:48:27 +0900 +timestamp: 2024-12-01 11:36:10 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-refseq_protein.tsv (2024-10-07 12:53:40 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-refseq_protein.tsv (2024-11-30 14:15:09 +0900) +latest-prerequisite time: 2024-11-30 14:15:09 +0900 ................................ Rule for TTL (output/ttl/uniprot-taxonomy.ttl) @@ -9320,12 +9549,12 @@ Rule for TTL (output/ttl/uniprot-taxonomy.ttl) Investigating output/ttl/uniprot-taxonomy.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 10:42:58 +0900 +timestamp: 2024-12-01 12:33:41 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-taxonomy.tsv (2024-10-07 13:26:44 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-taxonomy.tsv (2024-11-30 14:50:01 +0900) +latest-prerequisite time: 2024-11-30 14:50:01 +0900 ................................ Rule for TTL (output/ttl/uniprot-uniprot_mnemonic.ttl) @@ -9333,12 +9562,12 @@ Rule for TTL (output/ttl/uniprot-uniprot_mnemonic.ttl) Investigating output/ttl/uniprot-uniprot_mnemonic.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 12:35:22 +0900 +timestamp: 2024-12-01 14:32:48 +0900 pre-requisites: --output/ttl/ () ---output/tsv/uniprot-uniprot_mnemonic.tsv (2024-10-07 14:21:31 +0900) --config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 +--output/tsv/uniprot-uniprot_mnemonic.tsv (2024-11-30 15:46:15 +0900) +latest-prerequisite time: 2024-11-30 15:46:15 +0900 ................................ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_insdc.ttl) @@ -9346,12 +9575,12 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_insdc.ttl) Investigating output/ttl/uniprot_reference_proteome-assembly_insdc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 11:05:28 +0900 +timestamp: 2024-12-01 14:33:01 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/uniprot_reference_proteome-assembly_insdc.tsv (2024-11-23 01:18:25 +0900) -latest-prerequisite time: 2024-11-23 01:18:25 +0900 +--output/tsv/uniprot_reference_proteome-assembly_insdc.tsv (2024-11-30 15:46:16 +0900) +latest-prerequisite time: 2024-11-30 15:46:16 +0900 ................................ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_refseq.ttl) @@ -9359,12 +9588,12 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_refseq.ttl) Investigating output/ttl/uniprot_reference_proteome-assembly_refseq.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 11:05:28 +0900 +timestamp: 2024-12-01 14:33:02 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/uniprot_reference_proteome-assembly_refseq.tsv (2024-11-23 01:18:26 +0900) -latest-prerequisite time: 2024-11-23 01:18:26 +0900 +--output/tsv/uniprot_reference_proteome-assembly_refseq.tsv (2024-11-30 15:46:16 +0900) +latest-prerequisite time: 2024-11-30 15:46:16 +0900 ................................ Rule for TTL (output/ttl/uniprot_reference_proteome-taxonomy.ttl) @@ -9372,12 +9601,12 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-taxonomy.ttl) Investigating output/ttl/uniprot_reference_proteome-taxonomy.ttl class: Rake::FileTask task needed: true -timestamp: 2024-11-23 11:05:34 +0900 +timestamp: 2024-12-01 14:33:09 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-10-25 17:00:17 +0900) ---output/tsv/uniprot_reference_proteome-taxonomy.tsv (2024-11-23 01:18:27 +0900) -latest-prerequisite time: 2024-11-23 01:18:27 +0900 +--output/tsv/uniprot_reference_proteome-taxonomy.tsv (2024-11-30 15:46:17 +0900) +latest-prerequisite time: 2024-11-30 15:46:17 +0900 ................................ Rule for TTL (output/ttl/wikipathways-uniprot.ttl) @@ -9395,171 +9624,177 @@ latest-prerequisite time: 2024-10-25 17:00:17 +0900 ### Update ID and Label TTL for atc if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/atc.ttl has no timestamp file -# File output/id-label/atc.ttl is created 6.6840846248398496 days ago (will be updated when >5 days) +# File output/id-label/atc.ttl is created 8.144138591754073 days ago (will be updated when >5 days) ## Update output/id-label/atc.ttl -< 2024-11-23T11:05:36 atc +< 2024-12-01T14:33:11 atc togoid-rdfize-id-label atc -> 2024-11-23T11:05:37 atc +> 2024-12-01T14:33:12 atc ### Update ID and Label TTL for bioproject if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/bioproject.ttl is older than input/bioproject/download.lock ## Update output/id-label/bioproject.ttl -< 2024-11-23T11:05:37 bioproject +< 2024-12-01T14:33:12 bioproject togoid-rdfize-id-label bioproject -> 2024-11-23T11:05:44 bioproject +> 2024-12-01T14:33:19 bioproject ### Update ID and Label TTL for biosample if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/biosample.ttl is older than input/biosample/download.lock ## Update output/id-label/biosample.ttl -< 2024-11-23T11:05:44 biosample +< 2024-12-01T14:33:19 biosample togoid-rdfize-id-label biosample -> 2024-11-23T11:11:33 biosample +> 2024-12-01T14:37:38 biosample ### Update ID and Label TTL for cellosaurus if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/cellosaurus.ttl is newer than input/cellosaurus/download.lock # => Preserving output/ttl/cellosaurus.ttl ### Update ID and Label TTL for ec if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/ec.ttl has no timestamp file -# File output/id-label/ec.ttl is created 6.68517864947949 days ago (will be updated when >5 days) +# File output/id-label/ec.ttl is created 8.143104567655971 days ago (will be updated when >5 days) ## Update output/id-label/ec.ttl -< 2024-11-23T11:11:33 ec +< 2024-12-01T14:37:38 ec togoid-rdfize-id-label ec -> 2024-11-23T11:11:34 ec +> 2024-12-01T14:37:39 ec ### Update ID and Label TTL for flybase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/flybase_gene.ttl has no timestamp file -# File output/id-label/flybase_gene.ttl is created 6.684237960557685 days ago (will be updated when >5 days) +# File output/id-label/flybase_gene.ttl is created 8.142061670317963 days ago (will be updated when >5 days) ## Update output/id-label/flybase_gene.ttl -< 2024-11-23T11:11:34 flybase_gene +< 2024-12-01T14:37:39 flybase_gene togoid-rdfize-id-label flybase_gene -> 2024-11-23T11:13:05 flybase_gene +> 2024-12-01T14:39:06 flybase_gene ### Update ID and Label TTL for hmdb if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/hmdb.ttl is newer than input/hmdb/download.lock # => Preserving output/ttl/hmdb.ttl ### Update ID and Label TTL for cog if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/cog.ttl is newer than input/cog/download.lock # => Preserving output/ttl/cog.ttl -### Update ID and Label TTL for interpro if check_id_label_filesize false or check_id_label_timestamp false -# File output/id-label/interpro.ttl is newer than input/interpro/download.lock -# => Preserving output/ttl/interpro.ttl +### Update ID and Label TTL for interpro if check_id_label_filesize false or check_id_label_timestamp true +# File output/id-label/interpro.ttl is older than input/interpro/download.lock +## Update output/id-label/interpro.ttl +< 2024-12-01T14:39:06 interpro +togoid-rdfize-id-label interpro +> 2024-12-01T14:39:08 interpro ### Update ID and Label TTL for mgi_allele if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_allele.ttl has no timestamp file -# File output/id-label/mgi_allele.ttl is created 6.68527618508198 days ago (will be updated when >5 days) +# File output/id-label/mgi_allele.ttl is created 8.143076062344711 days ago (will be updated when >5 days) ## Update output/id-label/mgi_allele.ttl -< 2024-11-23T11:13:05 mgi_allele +< 2024-12-01T14:39:08 mgi_allele togoid-rdfize-id-label mgi_allele -> 2024-11-23T11:13:06 mgi_allele +> 2024-12-01T14:39:10 mgi_allele ### Update ID and Label TTL for mgi_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_gene.ttl is older than input/mgi_gene/download.lock ## Update output/id-label/mgi_gene.ttl -< 2024-11-23T11:13:06 mgi_gene +< 2024-12-01T14:39:10 mgi_gene togoid-rdfize-id-label mgi_gene -> 2024-11-23T11:13:10 mgi_gene +> 2024-12-01T14:39:14 mgi_gene ### Update ID and Label TTL for mgi_genotype if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_genotype.ttl is older than input/mgi_genotype/download.lock ## Update output/id-label/mgi_genotype.ttl -< 2024-11-23T11:13:10 mgi_genotype +< 2024-12-01T14:39:14 mgi_genotype togoid-rdfize-id-label mgi_genotype -> 2024-11-23T11:13:11 mgi_genotype +> 2024-12-01T14:39:16 mgi_genotype ### Update ID and Label TTL for mirbase if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mirbase.ttl has no timestamp file -# File output/id-label/mirbase.ttl is created 6.683935641951967 days ago (will be updated when >5 days) +# File output/id-label/mirbase.ttl is created 8.141772836796378 days ago (will be updated when >5 days) ## Update output/id-label/mirbase.ttl -< 2024-11-23T11:13:11 mirbase +< 2024-12-01T14:39:16 mirbase togoid-rdfize-id-label mirbase -> 2024-11-23T11:15:07 mirbase +> 2024-12-01T14:41:09 mirbase ### Update ID and Label TTL for pathbank if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pathbank.ttl has no timestamp file -# File output/id-label/pathbank.ttl is created 6.6852655086222335 days ago (will be updated when >5 days) +# File output/id-label/pathbank.ttl is created 8.143073485748333 days ago (will be updated when >5 days) ## Update output/id-label/pathbank.ttl -< 2024-11-23T11:15:07 pathbank +< 2024-12-01T14:41:09 pathbank togoid-rdfize-id-label pathbank -> 2024-11-23T11:15:07 pathbank +> 2024-12-01T14:41:10 pathbank ### Update ID and Label TTL for pfam if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pfam.ttl has no timestamp file -# File output/id-label/pfam.ttl is created 6.685231615483749 days ago (will be updated when >5 days) +# File output/id-label/pfam.ttl is created 8.143027417725799 days ago (will be updated when >5 days) ## Update output/id-label/pfam.ttl -< 2024-11-23T11:15:07 pfam +< 2024-12-01T14:41:10 pfam togoid-rdfize-id-label pfam -> 2024-11-23T11:15:12 pfam -### Update ID and Label TTL for prosite if check_id_label_filesize false or check_id_label_timestamp false -# File output/id-label/prosite.ttl is newer than input/prosite/download.lock -# => Preserving output/ttl/prosite.ttl +> 2024-12-01T14:41:14 pfam +### Update ID and Label TTL for prosite if check_id_label_filesize false or check_id_label_timestamp true +# File output/id-label/prosite.ttl is older than input/prosite/download.lock +## Update output/id-label/prosite.ttl +< 2024-12-01T14:41:14 prosite +togoid-rdfize-id-label prosite +> 2024-12-01T14:41:16 prosite ### Update ID and Label TTL for prosite_prorule if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/prosite_prorule.ttl has no timestamp file -# File output/id-label/prosite_prorule.ttl is created 6.685285450259456 days ago (will be updated when >5 days) +# File output/id-label/prosite_prorule.ttl is created 8.14308886147934 days ago (will be updated when >5 days) ## Update output/id-label/prosite_prorule.ttl -< 2024-11-23T11:15:12 prosite_prorule +< 2024-12-01T14:41:16 prosite_prorule togoid-rdfize-id-label prosite_prorule -> 2024-11-23T11:15:13 prosite_prorule +> 2024-12-01T14:41:16 prosite_prorule ### Update ID and Label TTL for pubchem_pathway if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pubchem_pathway.ttl has no timestamp file -# File output/id-label/pubchem_pathway.ttl is created 6.6852776647948495 days ago (will be updated when >5 days) +# File output/id-label/pubchem_pathway.ttl is created 8.14307888699088 days ago (will be updated when >5 days) ## Update output/id-label/pubchem_pathway.ttl -< 2024-11-23T11:15:13 pubchem_pathway +< 2024-12-01T14:41:16 pubchem_pathway togoid-rdfize-id-label pubchem_pathway -> 2024-11-23T11:15:14 pubchem_pathway +> 2024-12-01T14:41:17 pubchem_pathway ### Update ID and Label TTL for refseq_rna if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/refseq_rna.ttl is newer than input/refseq_rna/download.lock # => Preserving output/ttl/refseq_rna.ttl ### Update ID and Label TTL for rgd if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/rgd.ttl has no timestamp file -# File output/id-label/rgd.ttl is created 6.680150489129155 days ago (will be updated when >5 days) +# File output/id-label/rgd.ttl is created 8.142315210347546 days ago (will be updated when >5 days) ## Update output/id-label/rgd.ttl -< 2024-11-23T11:15:14 rgd +< 2024-12-01T14:41:17 rgd togoid-rdfize-id-label rgd -> 2024-11-23T11:16:21 rgd +> 2024-12-01T14:42:25 rgd ### Update ID and Label TTL for sgd if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/sgd.ttl has no timestamp file -# File output/id-label/sgd.ttl is created 6.680025382895162 days ago (will be updated when >5 days) +# File output/id-label/sgd.ttl is created 8.142195839424895 days ago (will be updated when >5 days) ## Update output/id-label/sgd.ttl -< 2024-11-23T11:16:21 sgd +< 2024-12-01T14:42:25 sgd togoid-rdfize-id-label sgd -> 2024-11-23T11:17:40 sgd +> 2024-12-01T14:43:44 sgd ### Update ID and Label TTL for swisslipids if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/swisslipids.ttl is older than input/swisslipids/download.lock ## Update output/id-label/swisslipids.ttl -< 2024-11-23T11:17:40 swisslipids +< 2024-12-01T14:43:44 swisslipids togoid-rdfize-id-label swisslipids -> 2024-11-23T11:17:49 swisslipids +> 2024-12-01T14:43:50 swisslipids ### Update ID and Label TTL for tair if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/tair.ttl has no timestamp file -# File output/id-label/tair.ttl is created 6.680078274800093 days ago (will be updated when >5 days) +# File output/id-label/tair.ttl is created 8.142166136152396 days ago (will be updated when >5 days) ## Update output/id-label/tair.ttl -< 2024-11-23T11:17:49 tair +< 2024-12-01T14:43:50 tair togoid-rdfize-id-label tair -> 2024-11-23T11:19:07 tair +> 2024-12-01T14:45:09 tair ### Update ID and Label TTL for uniprot_reference_proteome if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/uniprot_reference_proteome.ttl has no timestamp file -# File output/id-label/uniprot_reference_proteome.ttl is created 6.6809340659904395 days ago (will be updated when >5 days) +# File output/id-label/uniprot_reference_proteome.ttl is created 8.143014852575059 days ago (will be updated when >5 days) ## Update output/id-label/uniprot_reference_proteome.ttl -< 2024-11-23T11:19:07 uniprot_reference_proteome +< 2024-12-01T14:45:09 uniprot_reference_proteome togoid-rdfize-id-label uniprot_reference_proteome -> 2024-11-23T11:19:14 uniprot_reference_proteome +> 2024-12-01T14:45:13 uniprot_reference_proteome ### Update ID and Label TTL for vgnc if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/vgnc.ttl has no timestamp file -# File output/id-label/vgnc.ttl is created 6.680099114579595 days ago (will be updated when >5 days) +# File output/id-label/vgnc.ttl is created 8.14213957574529 days ago (will be updated when >5 days) ## Update output/id-label/vgnc.ttl -< 2024-11-23T11:19:14 vgnc +< 2024-12-01T14:45:13 vgnc togoid-rdfize-id-label vgnc -> 2024-11-23T11:20:32 vgnc +> 2024-12-01T14:46:34 vgnc ### Update ID and Label TTL for wormbase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/wormbase_gene.ttl has no timestamp file -# File output/id-label/wormbase_gene.ttl is created 6.680105921543727 days ago (will be updated when >5 days) +# File output/id-label/wormbase_gene.ttl is created 8.142176750445765 days ago (will be updated when >5 days) ## Update output/id-label/wormbase_gene.ttl -< 2024-11-23T11:20:32 wormbase_gene +< 2024-12-01T14:46:34 wormbase_gene togoid-rdfize-id-label wormbase_gene -> 2024-11-23T11:21:50 wormbase_gene +> 2024-12-01T14:47:54 wormbase_gene ### Update ID and Label TTL for xenbase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/xenbase_gene.ttl has no timestamp file -# File output/id-label/xenbase_gene.ttl is created 6.680102540413622 days ago (will be updated when >5 days) +# File output/id-label/xenbase_gene.ttl is created 8.142194934286122 days ago (will be updated when >5 days) ## Update output/id-label/xenbase_gene.ttl -< 2024-11-23T11:21:50 xenbase_gene +< 2024-12-01T14:47:54 xenbase_gene togoid-rdfize-id-label xenbase_gene -> 2024-11-23T11:23:08 xenbase_gene +> 2024-12-01T14:49:12 xenbase_gene ### Update ID and Label TTL for zfin_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/zfin_gene.ttl has no timestamp file -# File output/id-label/zfin_gene.ttl is created 6.6801002901185305 days ago (will be updated when >5 days) +# File output/id-label/zfin_gene.ttl is created 8.142194819832222 days ago (will be updated when >5 days) ## Update output/id-label/zfin_gene.ttl -< 2024-11-23T11:23:08 zfin_gene +< 2024-12-01T14:49:12 zfin_gene togoid-rdfize-id-label zfin_gene -> 2024-11-23T11:24:26 zfin_gene +> 2024-12-01T14:50:31 zfin_gene Rule for ID and Label TTL (output/id-label/cellosaurus.ttl) ------------------------------ Investigating output/id-label/cellosaurus.ttl @@ -9596,29 +9831,5 @@ pre-requisites: latest-prerequisite time: 2024-10-25 17:00:17 +0900 ................................ -Rule for ID and Label TTL (output/id-label/interpro.ttl) ------------------------------- -Investigating output/id-label/interpro.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 12:41:21 +0900 -pre-requisites: ---output/id-label/ () ---config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 -................................ - -Rule for ID and Label TTL (output/id-label/prosite.ttl) ------------------------------- -Investigating output/id-label/prosite.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 12:43:23 +0900 -pre-requisites: ---output/id-label/ () ---config/dataset.yaml (2024-10-25 17:00:17 +0900) -latest-prerequisite time: 2024-10-25 17:00:17 +0900 -................................ - -*** Finished: 2024-11-23T11:24:26 *** +*** Finished: 2024-12-01T14:50:31 *** From 8f602e01e3253896ab3039e28b034cb415d3409a Mon Sep 17 00:00:00 2001 From: sh-ikeda Date: Thu, 5 Dec 2024 16:45:59 +0900 Subject: [PATCH 3/3] weekly update --- docs/help.md | 4 ++-- docs/help_ja.md | 4 ++-- docs/news.md | 3 +++ 3 files changed, 7 insertions(+), 4 deletions(-) diff --git a/docs/help.md b/docs/help.md index c861d79a..96bc0d53 100644 --- a/docs/help.md +++ b/docs/help.md @@ -1,5 +1,5 @@ # TogoID ver. 2.0 -Datasets last updated: 2024-11-26 +Datasets last updated: 2024-12-05 ## About - [TogoID](https://togoid.dbcls.jp/) is an ID conversion service implementing unique features with an intuitive web interface and an API for programmatic access. TogoID supports datasets from various biological categories such as gene, protein, chemical compound, pathway, disease, etc. TogoID users can perform exploratory multistep conversions to find a path among IDs. To guide the interpretation of biological meanings in the conversions, we crafted an [ontology](https://togoid.dbcls.jp/ontology) that defines the semantics of the dataset relations. @@ -10,7 +10,7 @@ Datasets last updated: 2024-11-26 ## Video tutorial - [How to use TogoID: an exploratory ID converter to bridge biological datasets](https://youtu.be/gXnvm6Fn4R8) -## Statistics (as of 2024-11-26) +## Statistics (as of 2024-12-05) - Number of target datasets - 105 (from 73 databases) - For details on the target DBs and ID examples, please refer to the "DATASETS" tab. diff --git a/docs/help_ja.md b/docs/help_ja.md index 4ad2e7e1..eccf7e78 100644 --- a/docs/help_ja.md +++ b/docs/help_ja.md @@ -1,5 +1,5 @@ # TogoID ver. 2.0 -Datasets last updated: 2024-11-26 +Datasets last updated: 2024-12-05 ## About - [TogoID](https://togoid.dbcls.jp/) は、直感的なインターフェースにより生命科学系データベース(DB)間のつながりを探索的に確認しながらID変換を行うことができるウェブアプリケーションです。同一の実体を指すID間の変換だけでなく、関連する別のカテゴリーのIDへの変換も可能です。また、直接リンクされていないDBのID間でも、他のDBを経由した変換を探索することができます。 @@ -10,7 +10,7 @@ Datasets last updated: 2024-11-26 ## 動画マニュアル - [TogoIDを使って生命科学系データベースのさまざまなIDを探索的に変換する](https://youtu.be/gXnvm6Fn4R8) -## 統計 (2024-11-26) +## 統計 (2024-12-05) - 対象データセット数 - 105 (73 のデータベースに由来) - 対象DBの詳細やID例については、"DATASETS" タブ からご覧いただけます。 diff --git a/docs/news.md b/docs/news.md index 6af8d2b2..817847e2 100644 --- a/docs/news.md +++ b/docs/news.md @@ -1,3 +1,6 @@ +# 2024-12-05 +- Weekly update has been completed. + # 2024-11-26 - Weekly update has been completed.