From 8394e6f211b3852e7668abd42869275fc555775b Mon Sep 17 00:00:00 2001 From: sh-ikeda Date: Wed, 10 Jan 2024 12:12:00 +0900 Subject: [PATCH 1/3] enable to fetch more than 1 million lines --- bin/sparql_taxon.rb | 15 ++++++++++----- 1 file changed, 10 insertions(+), 5 deletions(-) diff --git a/bin/sparql_taxon.rb b/bin/sparql_taxon.rb index 6ba16f7c..156a4b4b 100755 --- a/bin/sparql_taxon.rb +++ b/bin/sparql_taxon.rb @@ -5,13 +5,18 @@ taxonomy_list = ARGV.shift || "../../input/ensembl/taxonomy.txt" query_template = File.read(query_file) +limit = 1000000 File.read(taxonomy_list).split("\n").each do |taxon| - query = query_template.sub('{{taxon}}', taxon) - cmd = "curl -s -H 'Accept: text/csv' --data-urlencode 'query=#{query}' #{endpoint} | sed -E 1d" - IO.popen(cmd) do |io| - while buffer = io.gets - puts buffer.gsub(',', "\t").gsub('"', '') + i = 0 + while i % limit == 0 + query = query_template.sub('{{taxon}}', taxon) + " OFFSET #{i} LIMIT #{limit}" + cmd = "curl -s -H 'Accept: text/csv' --data-urlencode 'query=#{query}' #{endpoint} | sed -E 1d" + IO.popen(cmd) do |io| + while buffer = io.gets + puts buffer.gsub(',', "\t").gsub('"', '') + i += 1 + end end end end From 0b68ab0dceca376e7eb7c87290dcdb965b327747 Mon Sep 17 00:00:00 2001 From: sh-ikeda Date: Wed, 10 Jan 2024 17:31:51 +0900 Subject: [PATCH 2/3] handle error --- bin/sparql_taxon.rb | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/bin/sparql_taxon.rb b/bin/sparql_taxon.rb index 156a4b4b..a05e4b44 100755 --- a/bin/sparql_taxon.rb +++ b/bin/sparql_taxon.rb @@ -9,7 +9,12 @@ File.read(taxonomy_list).split("\n").each do |taxon| i = 0 + loop_count = 0 while i % limit == 0 + if loop_count * limit != i + $stderr.puts "Error: Failed to retrieve taxon:#{taxon} in loop_count:#{loop_count}" + break + end query = query_template.sub('{{taxon}}', taxon) + " OFFSET #{i} LIMIT #{limit}" cmd = "curl -s -H 'Accept: text/csv' --data-urlencode 'query=#{query}' #{endpoint} | sed -E 1d" IO.popen(cmd) do |io| @@ -18,5 +23,6 @@ i += 1 end end + loop_count += 1 end end From 75ecfc3b139d7dfd286d743b865455d9ffd2f474 Mon Sep 17 00:00:00 2001 From: Toshiaki Katayama Date: Sat, 13 Jan 2024 15:30:24 +0900 Subject: [PATCH 3/3] Updated logs --- log/error.log | 483 +++++ log/pair_count.tsv | 100 +- log/pair_count_history.tsv | 3 +- log/update.log | 3753 ++++++++++++++++++++---------------- 4 files changed, 2659 insertions(+), 1680 deletions(-) diff --git a/log/error.log b/log/error.log index a775d9c3..10267ac4 100644 --- a/log/error.log +++ b/log/error.log @@ -1,5 +1,488 @@ # Error: output/tsv/chembl_target-ensembl_gene.tsv new file size per old 0 / 61845 = 0.0 < 0.5 # Error: Failed to create output/tsv/chembl_target-ensembl_gene.tsv or created file was empty +Error: Failed to retrieve taxon:61819 in loop_count:1 +Error: Failed to retrieve taxon:132585 in loop_count:1 +Error: Failed to retrieve taxon:8845 in loop_count:1 +Error: Failed to retrieve taxon:241587 in loop_count:1 +Error: Failed to retrieve taxon:8823 in loop_count:1 +Error: Failed to retrieve taxon:211598 in loop_count:1 +Error: Failed to retrieve taxon:8824 in loop_count:1 +Error: Failed to retrieve taxon:161767 in loop_count:1 +Error: Failed to retrieve taxon:8840 in loop_count:1 +Error: Failed to retrieve taxon:75864 in loop_count:1 +Error: Failed to retrieve taxon:30521 in loop_count:1 +Error: Failed to retrieve taxon:9771 in loop_count:1 +Error: Failed to retrieve taxon:224669 in loop_count:1 +Error: Failed to retrieve taxon:30461 in loop_count:1 +Error: Failed to retrieve taxon:106734 in loop_count:1 +Error: Failed to retrieve taxon:37548 in loop_count:1 +Error: Failed to retrieve taxon:84702 in loop_count:1 +Error: Failed to retrieve taxon:9358 in loop_count:1 +Error: Failed to retrieve taxon:1240228 in loop_count:1 +Error: Failed to retrieve taxon:8103 in loop_count:1 +Error: Failed to retrieve taxon:425635 in loop_count:1 +Error: Failed to retrieve taxon:9089 in loop_count:1 +Error: Failed to retrieve taxon:181631 in loop_count:1 +Error: Failed to retrieve taxon:91951 in loop_count:1 +Error: Failed to retrieve taxon:51154 in loop_count:1 +Error: Failed to retrieve taxon:8475 in loop_count:1 +Error: Failed to retrieve taxon:13489 in loop_count:1 +Error: Failed to retrieve taxon:83772 in loop_count:1 +Error: Failed to retrieve taxon:7764 in loop_count:1 +Error: Failed to retrieve taxon:44316 in loop_count:1 +Error: Failed to retrieve taxon:100819 in loop_count:1 +Error: Failed to retrieve taxon:33528 in loop_count:1 +Error: Failed to retrieve taxon:38772 in loop_count:1 +Error: Failed to retrieve taxon:62062 in loop_count:1 +Error: Failed to retrieve taxon:40217 in loop_count:1 +Error: Failed to retrieve taxon:445787 in loop_count:1 +Error: Failed to retrieve taxon:8630 in loop_count:1 +Error: Failed to retrieve taxon:2593467 in loop_count:1 +Error: Failed to retrieve taxon:9315 in loop_count:1 +Error: Failed to retrieve taxon:94237 in loop_count:1 +Error: Failed to retrieve taxon:68415 in loop_count:1 +Error: Failed to retrieve taxon:10103 in loop_count:1 +Error: Failed to retrieve taxon:47308 in loop_count:1 +Error: Failed to retrieve taxon:35670 in loop_count:1 +Error: Failed to retrieve taxon:47969 in loop_count:1 +Error: Failed to retrieve taxon:123683 in loop_count:1 +Error: Failed to retrieve taxon:183150 in loop_count:1 +Error: Failed to retrieve taxon:257818 in loop_count:1 +Error: Failed to retrieve taxon:367368 in loop_count:1 +Error: Failed to retrieve taxon:9054 in loop_count:1 +Error: Failed to retrieve taxon:9689 in loop_count:1 +Error: Failed to retrieve taxon:409849 in loop_count:1 +Error: Failed to retrieve taxon:1328070 in loop_count:1 +Error: Failed to retrieve taxon:9049 in loop_count:1 +Error: Failed to retrieve taxon:59479 in loop_count:1 +Error: Failed to retrieve taxon:99837 in loop_count:1 +Error: Failed to retrieve taxon:96440 in loop_count:1 +Error: Failed to retrieve taxon:52904 in loop_count:1 +Error: Failed to retrieve taxon:311401 in loop_count:1 +Error: Failed to retrieve taxon:8508 in loop_count:1 +Error: Failed to retrieve taxon:37032 in loop_count:1 +Error: Failed to retrieve taxon:55149 in loop_count:1 +Error: Failed to retrieve taxon:9643 in loop_count:1 +Error: Failed to retrieve taxon:441215 in loop_count:1 +Error: Failed to retrieve taxon:61221 in loop_count:1 +Error: Failed to retrieve taxon:1220523 in loop_count:1 +Error: Failed to retrieve taxon:10096 in loop_count:1 +Error: Failed to retrieve taxon:223781 in loop_count:1 +Error: Failed to retrieve taxon:241587 in loop_count:1 +Error: Failed to retrieve taxon:194338 in loop_count:1 +Error: Failed to retrieve taxon:8823 in loop_count:1 +Error: Failed to retrieve taxon:8824 in loop_count:1 +Error: Failed to retrieve taxon:308060 in loop_count:1 +Error: Failed to retrieve taxon:9771 in loop_count:1 +Error: Failed to retrieve taxon:224669 in loop_count:1 +Error: Failed to retrieve taxon:158456 in loop_count:1 +Error: Failed to retrieve taxon:30461 in loop_count:1 +Error: Failed to retrieve taxon:286419 in loop_count:1 +Error: Failed to retrieve taxon:106734 in loop_count:1 +Error: Failed to retrieve taxon:156563 in loop_count:1 +Error: Failed to retrieve taxon:84702 in loop_count:1 +Error: Failed to retrieve taxon:1240228 in loop_count:1 +Error: Failed to retrieve taxon:1196302 in loop_count:1 +Error: Failed to retrieve taxon:425635 in loop_count:1 +Error: Failed to retrieve taxon:9089 in loop_count:1 +Error: Failed to retrieve taxon:87175 in loop_count:1 +Error: Failed to retrieve taxon:198806 in loop_count:1 +Error: Failed to retrieve taxon:181631 in loop_count:1 +Error: Failed to retrieve taxon:91951 in loop_count:1 +Error: Failed to retrieve taxon:51154 in loop_count:1 +Error: Failed to retrieve taxon:299321 in loop_count:1 +Error: Failed to retrieve taxon:83772 in loop_count:1 +Error: Failed to retrieve taxon:27687 in loop_count:1 +Error: Failed to retrieve taxon:173247 in loop_count:1 +Error: Failed to retrieve taxon:100819 in loop_count:1 +Error: Failed to retrieve taxon:1825980 in loop_count:1 +Error: Failed to retrieve taxon:441366 in loop_count:1 +Error: Failed to retrieve taxon:40217 in loop_count:1 +Error: Failed to retrieve taxon:445787 in loop_count:1 +Error: Failed to retrieve taxon:8630 in loop_count:1 +Error: Failed to retrieve taxon:321398 in loop_count:1 +Error: Failed to retrieve taxon:2593467 in loop_count:1 +Error: Failed to retrieve taxon:9994 in loop_count:1 +Error: Failed to retrieve taxon:586833 in loop_count:1 +Error: Failed to retrieve taxon:47308 in loop_count:1 +Error: Failed to retrieve taxon:35670 in loop_count:1 +Error: Failed to retrieve taxon:30464 in loop_count:1 +Error: Failed to retrieve taxon:257818 in loop_count:1 +Error: Failed to retrieve taxon:64176 in loop_count:1 +Error: Failed to retrieve taxon:210632 in loop_count:1 +Error: Failed to retrieve taxon:42100 in loop_count:1 +Error: Failed to retrieve taxon:1328070 in loop_count:1 +Error: Failed to retrieve taxon:591936 in loop_count:1 +Error: Failed to retrieve taxon:103695 in loop_count:1 +Error: Failed to retrieve taxon:181472 in loop_count:1 +Error: Failed to retrieve taxon:99837 in loop_count:1 +Error: Failed to retrieve taxon:2489341 in loop_count:1 +Error: Failed to retrieve taxon:96440 in loop_count:1 +Error: Failed to retrieve taxon:311401 in loop_count:1 +Error: Failed to retrieve taxon:375764 in loop_count:1 +Error: Failed to retrieve taxon:8508 in loop_count:1 +Error: Failed to retrieve taxon:37032 in loop_count:1 +Error: Failed to retrieve taxon:55149 in loop_count:1 +Error: Failed to retrieve taxon:2587831 in loop_count:1 +Error: Failed to retrieve taxon:9999 in loop_count:1 +Error: Failed to retrieve taxon:441215 in loop_count:1 +Error: Failed to retrieve taxon:1220523 in loop_count:1 +Error: Failed to retrieve taxon:61819 in loop_count:1 +Error: Failed to retrieve taxon:132585 in loop_count:1 +Error: Failed to retrieve taxon:8845 in loop_count:1 +Error: Failed to retrieve taxon:241587 in loop_count:1 +Error: Failed to retrieve taxon:8823 in loop_count:1 +Error: Failed to retrieve taxon:211598 in loop_count:1 +Error: Failed to retrieve taxon:8824 in loop_count:1 +Error: Failed to retrieve taxon:161767 in loop_count:1 +Error: Failed to retrieve taxon:8840 in loop_count:1 +Error: Failed to retrieve taxon:75864 in loop_count:1 +Error: Failed to retrieve taxon:30521 in loop_count:1 +Error: Failed to retrieve taxon:9771 in loop_count:1 +Error: Failed to retrieve taxon:224669 in loop_count:1 +Error: Failed to retrieve taxon:30461 in loop_count:1 +Error: Failed to retrieve taxon:106734 in loop_count:1 +Error: Failed to retrieve taxon:37548 in loop_count:1 +Error: Failed to retrieve taxon:84702 in loop_count:1 +Error: Failed to retrieve taxon:9358 in loop_count:1 +Error: Failed to retrieve taxon:1240228 in loop_count:1 +Error: Failed to retrieve taxon:8103 in loop_count:1 +Error: Failed to retrieve taxon:425635 in loop_count:1 +Error: Failed to retrieve taxon:9089 in loop_count:1 +Error: Failed to retrieve taxon:51511 in loop_count:1 +Error: Failed to retrieve taxon:181631 in loop_count:1 +Error: Failed to retrieve taxon:91951 in loop_count:1 +Error: Failed to retrieve taxon:51154 in loop_count:1 +Error: Failed to retrieve taxon:8475 in loop_count:1 +Error: Failed to retrieve taxon:13489 in loop_count:1 +Error: Failed to retrieve taxon:83772 in loop_count:1 +Error: Failed to retrieve taxon:7764 in loop_count:1 +Error: Failed to retrieve taxon:44316 in loop_count:1 +Error: Failed to retrieve taxon:100819 in loop_count:1 +Error: Failed to retrieve taxon:33528 in loop_count:1 +Error: Failed to retrieve taxon:38772 in loop_count:1 +Error: Failed to retrieve taxon:62062 in loop_count:1 +Error: Failed to retrieve taxon:40217 in loop_count:1 +Error: Failed to retrieve taxon:445787 in loop_count:1 +Error: Failed to retrieve taxon:8630 in loop_count:1 +Error: Failed to retrieve taxon:2593467 in loop_count:1 +Error: Failed to retrieve taxon:9315 in loop_count:1 +Error: Failed to retrieve taxon:94237 in loop_count:1 +Error: Failed to retrieve taxon:68415 in loop_count:1 +Error: Failed to retrieve taxon:10103 in loop_count:1 +Error: Failed to retrieve taxon:47308 in loop_count:1 +Error: Failed to retrieve taxon:35670 in loop_count:1 +Error: Failed to retrieve taxon:452646 in loop_count:1 +Error: Failed to retrieve taxon:47969 in loop_count:1 +Error: Failed to retrieve taxon:123683 in loop_count:1 +Error: Failed to retrieve taxon:183150 in loop_count:1 +Error: Failed to retrieve taxon:257818 in loop_count:1 +Error: Failed to retrieve taxon:367368 in loop_count:1 +Error: Failed to retrieve taxon:9813 in loop_count:1 +Error: Failed to retrieve taxon:9054 in loop_count:1 +Error: Failed to retrieve taxon:9689 in loop_count:1 +Error: Failed to retrieve taxon:7757 in loop_count:1 +Error: Failed to retrieve taxon:409849 in loop_count:1 +Error: Failed to retrieve taxon:1328070 in loop_count:1 +Error: Failed to retrieve taxon:9049 in loop_count:1 +Error: Failed to retrieve taxon:59479 in loop_count:1 +Error: Failed to retrieve taxon:99837 in loop_count:1 +Error: Failed to retrieve taxon:96440 in loop_count:1 +Error: Failed to retrieve taxon:52904 in loop_count:1 +Error: Failed to retrieve taxon:311401 in loop_count:1 +Error: Failed to retrieve taxon:8508 in loop_count:1 +Error: Failed to retrieve taxon:37347 in loop_count:1 +Error: Failed to retrieve taxon:55149 in loop_count:1 +Error: Failed to retrieve taxon:99883 in loop_count:1 +Error: Failed to retrieve taxon:9643 in loop_count:1 +Error: Failed to retrieve taxon:441215 in loop_count:1 +Error: Failed to retrieve taxon:61221 in loop_count:1 +Error: Failed to retrieve taxon:1220523 in loop_count:1 +Error: Failed to retrieve taxon:10096 in loop_count:1 +Error: Failed to retrieve taxon:6239 in loop_count:1 +Error: Failed to retrieve taxon:cdg in loop_count:1 +Error: Failed to retrieve taxon:coe in loop_count:1 +Error: Failed to retrieve taxon:ene in loop_count:1 +Error: Failed to retrieve taxon:chr in loop_count:1 +Error: Failed to retrieve taxon:hpyr in loop_count:1 +Error: Failed to retrieve taxon:lmoe in loop_count:1 +Error: Failed to retrieve taxon:gm02408 in loop_count:1 +Error: Failed to retrieve taxon:hhm in loop_count:1 +Error: Failed to retrieve taxon:hpym in loop_count:1 +Error: Failed to retrieve taxon:ctln in loop_count:1 +Error: Failed to retrieve taxon:gm02410 in loop_count:1 +Error: Failed to retrieve taxon:amal in loop_count:1 +Error: Failed to retrieve taxon:lmob in loop_count:1 +Error: Failed to retrieve taxon:cjei in loop_count:1 +Error: Failed to retrieve taxon:sik in loop_count:1 +Error: Failed to retrieve taxon:srb in loop_count:1 +Error: Failed to retrieve taxon:axn in loop_count:1 +Error: Failed to retrieve taxon:gm02954 in loop_count:1 +Error: Failed to retrieve taxon:axo in loop_count:1 +Error: Failed to retrieve taxon:lpm in loop_count:1 +Error: Failed to retrieve taxon:hem in loop_count:1 +Error: Failed to retrieve taxon:hpaz in loop_count:1 +Error: Failed to retrieve taxon:sagr in loop_count:1 +Error: Failed to retrieve taxon:dmg in loop_count:1 +Error: Failed to retrieve taxon:nev in loop_count:1 +Error: Failed to retrieve taxon:gm02988 in loop_count:1 +Error: Failed to retrieve taxon:gm02989 in loop_count:1 +Error: Failed to retrieve taxon:gm02990 in loop_count:1 +Error: Failed to retrieve taxon:gm02835 in loop_count:1 +Error: Failed to retrieve taxon:gm02950 in loop_count:1 +Error: Failed to retrieve taxon:gm02997 in loop_count:1 +Error: Failed to retrieve taxon:bcee in loop_count:1 +Error: Failed to retrieve taxon:gm02986 in loop_count:1 +Error: Failed to retrieve taxon:gm02994 in loop_count:1 +Error: Failed to retrieve taxon:gm02995 in loop_count:1 +Error: Failed to retrieve taxon:gm02996 in loop_count:1 +Error: Failed to retrieve taxon:ppol in loop_count:1 +Error: Failed to retrieve taxon:gm02958 in loop_count:1 +Error: Failed to retrieve taxon:gm02978 in loop_count:1 +Error: Failed to retrieve taxon:gm02979 in loop_count:1 +Error: Failed to retrieve taxon:gm02980 in loop_count:1 +Error: Failed to retrieve taxon:gm02981 in loop_count:1 +Error: Failed to retrieve taxon:gm02993 in loop_count:1 +Error: Failed to retrieve taxon:gm03003 in loop_count:1 +Error: Failed to retrieve taxon:gm03004 in loop_count:1 +Error: Failed to retrieve taxon:gm03005 in loop_count:1 +Error: Failed to retrieve taxon:gm02952 in loop_count:1 +Error: Failed to retrieve taxon:gm02953 in loop_count:1 +Error: Failed to retrieve taxon:nvn in loop_count:1 +Error: Failed to retrieve taxon:gm03001 in loop_count:1 +Error: Failed to retrieve taxon:gm03002 in loop_count:1 +Error: Failed to retrieve taxon:gm03155 in loop_count:1 +Error: Failed to retrieve taxon:gm03139 in loop_count:1 +Error: Failed to retrieve taxon:paec in loop_count:1 +Error: Failed to retrieve taxon:paeo in loop_count:1 +Error: Failed to retrieve taxon:spyo in loop_count:1 +Error: Failed to retrieve taxon:gm03151 in loop_count:1 +Error: Failed to retrieve taxon:gm03336 in loop_count:1 +Error: Failed to retrieve taxon:gm03182 in loop_count:1 +Error: Failed to retrieve taxon:hct in loop_count:1 +Error: Failed to retrieve taxon:paei in loop_count:1 +Error: Failed to retrieve taxon:paev in loop_count:1 +Error: Failed to retrieve taxon:gm03365 in loop_count:1 +Error: Failed to retrieve taxon:sio in loop_count:1 +Error: Failed to retrieve taxon:siq in loop_count:1 +Error: Failed to retrieve taxon:gm03361 in loop_count:1 +Error: Failed to retrieve taxon:gm03425 in loop_count:1 +Error: Failed to retrieve taxon:kpk in loop_count:1 +Error: Failed to retrieve taxon:gm03413 in loop_count:1 +Error: Failed to retrieve taxon:yel in loop_count:1 +Error: Failed to retrieve taxon:gba in loop_count:1 +Error: Failed to retrieve taxon:gm03667 in loop_count:1 +Error: Failed to retrieve taxon:gm03600 in loop_count:1 +Error: Failed to retrieve taxon:nid in loop_count:1 +Error: Failed to retrieve taxon:mthe in loop_count:1 +Error: Failed to retrieve taxon:gm03592 in loop_count:1 +Error: Failed to retrieve taxon:gm03687 in loop_count:1 +Error: Failed to retrieve taxon:gm03688 in loop_count:1 +Error: Failed to retrieve taxon:gm03689 in loop_count:1 +Error: Failed to retrieve taxon:gm03554 in loop_count:1 +Error: Failed to retrieve taxon:alu in loop_count:1 +Error: Failed to retrieve taxon:agw in loop_count:1 +Error: Failed to retrieve taxon:arg in loop_count:1 +Error: Failed to retrieve taxon:gm03624 in loop_count:1 +Error: Failed to retrieve taxon:gm03679 in loop_count:1 +Error: Failed to retrieve taxon:gm03680 in loop_count:1 +Error: Failed to retrieve taxon:gm03681 in loop_count:1 +Error: Failed to retrieve taxon:gm03682 in loop_count:1 +Error: Failed to retrieve taxon:gm03683 in loop_count:1 +Error: Failed to retrieve taxon:gm03684 in loop_count:1 +Error: Failed to retrieve taxon:gm03685 in loop_count:1 +Error: Failed to retrieve taxon:gm03686 in loop_count:1 +Error: Failed to retrieve taxon:gm03674 in loop_count:1 +Error: Failed to retrieve taxon:gm03675 in loop_count:1 +Error: Failed to retrieve taxon:gm03676 in loop_count:1 +Error: Failed to retrieve taxon:gm03677 in loop_count:1 +Error: Failed to retrieve taxon:gm03678 in loop_count:1 +Error: Failed to retrieve taxon:msz in loop_count:1 +Error: Failed to retrieve taxon:bchi in loop_count:1 +Error: Failed to retrieve taxon:bbgw in loop_count:1 +Error: Failed to retrieve taxon:bgw in loop_count:1 +Error: Failed to retrieve taxon:gm04044 in loop_count:1 +Error: Failed to retrieve taxon:hcc in loop_count:1 +Error: Failed to retrieve taxon:hcd in loop_count:1 +Error: Failed to retrieve taxon:srg in loop_count:1 +Error: Failed to retrieve taxon:tmg in loop_count:1 +Error: Failed to retrieve taxon:gm03996 in loop_count:1 +Error: Failed to retrieve taxon:gm04001 in loop_count:1 +Error: Failed to retrieve taxon:plb in loop_count:1 +Error: Failed to retrieve taxon:plc in loop_count:1 +Error: Failed to retrieve taxon:pli in loop_count:1 +Error: Failed to retrieve taxon:gm04124 in loop_count:1 +Error: Failed to retrieve taxon:gm04125 in loop_count:1 +Error: Failed to retrieve taxon:gm06281 in loop_count:1 +Error: Failed to retrieve taxon:gm06283 in loop_count:1 +Error: Failed to retrieve taxon:gm04174 in loop_count:1 +Error: Failed to retrieve taxon:gm04275 in loop_count:1 +Error: Failed to retrieve taxon:gm04705 in loop_count:1 +Error: Failed to retrieve taxon:gm04817 in loop_count:1 +Error: Failed to retrieve taxon:gm04818 in loop_count:1 +Error: Failed to retrieve taxon:gm04824 in loop_count:1 +Error: Failed to retrieve taxon:gm04529 in loop_count:1 +Error: Failed to retrieve taxon:gm04861 in loop_count:1 +Error: Failed to retrieve taxon:gm04864 in loop_count:1 +Error: Failed to retrieve taxon:gm04248 in loop_count:1 +Error: Failed to retrieve taxon:gm04841 in loop_count:1 +Error: Failed to retrieve taxon:gm04842 in loop_count:1 +Error: Failed to retrieve taxon:gm04844 in loop_count:1 +Error: Failed to retrieve taxon:gm04845 in loop_count:1 +Error: Failed to retrieve taxon:gm04870 in loop_count:1 +Error: Failed to retrieve taxon:gm04783 in loop_count:1 +Error: Failed to retrieve taxon:gm04877 in loop_count:1 +Error: Failed to retrieve taxon:gm04788 in loop_count:1 +Error: Failed to retrieve taxon:gm04819 in loop_count:1 +Error: Failed to retrieve taxon:gm04820 in loop_count:1 +Error: Failed to retrieve taxon:senb in loop_count:1 +Error: Failed to retrieve taxon:gm04858 in loop_count:1 +Error: Failed to retrieve taxon:gm04594 in loop_count:1 +Error: Failed to retrieve taxon:gm04596 in loop_count:1 +Error: Failed to retrieve taxon:gm04597 in loop_count:1 +Error: Failed to retrieve taxon:gm04686 in loop_count:1 +Error: Failed to retrieve taxon:gm04825 in loop_count:1 +Error: Failed to retrieve taxon:gm04826 in loop_count:1 +Error: Failed to retrieve taxon:gm04829 in loop_count:1 +Error: Failed to retrieve taxon:gm04830 in loop_count:1 +Error: Failed to retrieve taxon:gm04834 in loop_count:1 +Error: Failed to retrieve taxon:gm04853 in loop_count:1 +Error: Failed to retrieve taxon:gm04854 in loop_count:1 +Error: Failed to retrieve taxon:gm04862 in loop_count:1 +Error: Failed to retrieve taxon:gm04863 in loop_count:1 +Error: Failed to retrieve taxon:gm04804 in loop_count:1 +Error: Failed to retrieve taxon:gm04805 in loop_count:1 +Error: Failed to retrieve taxon:gm04813 in loop_count:1 +Error: Failed to retrieve taxon:gm04814 in loop_count:1 +Error: Failed to retrieve taxon:gm04273 in loop_count:1 +Error: Failed to retrieve taxon:mib in loop_count:1 +Error: Failed to retrieve taxon:wba in loop_count:1 +Error: Failed to retrieve taxon:gm04653 in loop_count:1 +Error: Failed to retrieve taxon:gm04821 in loop_count:1 +Error: Failed to retrieve taxon:gm04822 in loop_count:1 +Error: Failed to retrieve taxon:gm04823 in loop_count:1 +Error: Failed to retrieve taxon:gm04835 in loop_count:1 +Error: Failed to retrieve taxon:gm04836 in loop_count:1 +Error: Failed to retrieve taxon:gm04847 in loop_count:1 +Error: Failed to retrieve taxon:gm04848 in loop_count:1 +Error: Failed to retrieve taxon:gm04598 in loop_count:1 +Error: Failed to retrieve taxon:gm04610 in loop_count:1 +Error: Failed to retrieve taxon:gm04803 in loop_count:1 +Error: Failed to retrieve taxon:gm04810 in loop_count:1 +Error: Failed to retrieve taxon:gm04811 in loop_count:1 +Error: Failed to retrieve taxon:pcv in loop_count:1 +Error: Failed to retrieve taxon:mgb in loop_count:1 +Error: Failed to retrieve taxon:rbu in loop_count:1 +Error: Failed to retrieve taxon:gm04833 in loop_count:1 +Error: Failed to retrieve taxon:gm04839 in loop_count:1 +Error: Failed to retrieve taxon:gm04840 in loop_count:1 +Error: Failed to retrieve taxon:gm04850 in loop_count:1 +Error: Failed to retrieve taxon:gm04851 in loop_count:1 +Error: Failed to retrieve taxon:gm04855 in loop_count:1 +Error: Failed to retrieve taxon:gm04865 in loop_count:1 +Error: Failed to retrieve taxon:gm04866 in loop_count:1 +Error: Failed to retrieve taxon:gm04786 in loop_count:1 +Error: Failed to retrieve taxon:gm04787 in loop_count:1 +Error: Failed to retrieve taxon:gm04807 in loop_count:1 +Error: Failed to retrieve taxon:gm04808 in loop_count:1 +Error: Failed to retrieve taxon:gm04809 in loop_count:1 +Error: Failed to retrieve taxon:gm04815 in loop_count:1 +Error: Failed to retrieve taxon:gm04816 in loop_count:1 +Error: Failed to retrieve taxon:gm04837 in loop_count:1 +Error: Failed to retrieve taxon:gm04838 in loop_count:1 +Error: Failed to retrieve taxon:gm04843 in loop_count:1 +Error: Failed to retrieve taxon:gm04856 in loop_count:1 +Error: Failed to retrieve taxon:gm04857 in loop_count:1 +Error: Failed to retrieve taxon:gm04812 in loop_count:1 +Error: Failed to retrieve taxon:gm06263 in loop_count:1 +Error: Failed to retrieve taxon:gm06264 in loop_count:1 +Error: Failed to retrieve taxon:gm06286 in loop_count:1 +Error: Failed to retrieve taxon:gm06287 in loop_count:1 +Error: Failed to retrieve taxon:gm06288 in loop_count:1 +Error: Failed to retrieve taxon:gm06292 in loop_count:1 +Error: Failed to retrieve taxon:gm06293 in loop_count:1 +Error: Failed to retrieve taxon:gm06315 in loop_count:1 +Error: Failed to retrieve taxon:cgw in loop_count:1 +Error: Failed to retrieve taxon:pwo in loop_count:1 +Error: Failed to retrieve taxon:gm04661 in loop_count:1 +Error: Failed to retrieve taxon:gm04859 in loop_count:1 +Error: Failed to retrieve taxon:gm04860 in loop_count:1 +Error: Failed to retrieve taxon:gm04874 in loop_count:1 +Error: Failed to retrieve taxon:gm04798 in loop_count:1 +Error: Failed to retrieve taxon:gm04799 in loop_count:1 +Error: Failed to retrieve taxon:gm04802 in loop_count:1 +Error: Failed to retrieve taxon:gm05041 in loop_count:1 +Error: Failed to retrieve taxon:gm04827 in loop_count:1 +Error: Failed to retrieve taxon:gm04828 in loop_count:1 +Error: Failed to retrieve taxon:gm04831 in loop_count:1 +Error: Failed to retrieve taxon:gm04832 in loop_count:1 +Error: Failed to retrieve taxon:gm04849 in loop_count:1 +Error: Failed to retrieve taxon:gm04587 in loop_count:1 +Error: Failed to retrieve taxon:gm04871 in loop_count:1 +Error: Failed to retrieve taxon:gm04872 in loop_count:1 +Error: Failed to retrieve taxon:gm04875 in loop_count:1 +Error: Failed to retrieve taxon:gm04876 in loop_count:1 +Error: Failed to retrieve taxon:cum in loop_count:1 +Error: Failed to retrieve taxon:gm06267 in loop_count:1 +Error: Failed to retrieve taxon:gm06365 in loop_count:1 +Error: Failed to retrieve taxon:gm06366 in loop_count:1 +Error: Failed to retrieve taxon:gm06368 in loop_count:1 +Error: Failed to retrieve taxon:gm06369 in loop_count:1 +Error: Failed to retrieve taxon:gm06376 in loop_count:1 +Error: Failed to retrieve taxon:gm06377 in loop_count:1 +Error: Failed to retrieve taxon:gm06403 in loop_count:1 +Error: Failed to retrieve taxon:gm04846 in loop_count:1 +Error: Failed to retrieve taxon:gm04852 in loop_count:1 +Error: Failed to retrieve taxon:gm04867 in loop_count:1 +Error: Failed to retrieve taxon:gm04868 in loop_count:1 +Error: Failed to retrieve taxon:gm04869 in loop_count:1 +Error: Failed to retrieve taxon:gm04873 in loop_count:1 +Error: Failed to retrieve taxon:gm04789 in loop_count:1 +Error: Failed to retrieve taxon:gm04790 in loop_count:1 +Error: Failed to retrieve taxon:gm04791 in loop_count:1 +Error: Failed to retrieve taxon:gm06297 in loop_count:1 +Error: Failed to retrieve taxon:gm06299 in loop_count:1 +Error: Failed to retrieve taxon:gm04792 in loop_count:1 +Error: Failed to retrieve taxon:gm04793 in loop_count:1 +Error: Failed to retrieve taxon:gm04794 in loop_count:1 +Error: Failed to retrieve taxon:gm04795 in loop_count:1 +Error: Failed to retrieve taxon:gm04796 in loop_count:1 +Error: Failed to retrieve taxon:gm04797 in loop_count:1 +Error: Failed to retrieve taxon:gm05497 in loop_count:1 +Error: Failed to retrieve taxon:pspg in loop_count:1 +Error: Failed to retrieve taxon:gm06477 in loop_count:1 +Error: Failed to retrieve taxon:gm04800 in loop_count:1 +Error: Failed to retrieve taxon:gm04801 in loop_count:1 +Error: Failed to retrieve taxon:gm04806 in loop_count:1 +Error: Failed to retrieve taxon:gm06296 in loop_count:1 +Error: Failed to retrieve taxon:prf in loop_count:1 +Error: Failed to retrieve taxon:gm06341 in loop_count:1 +Error: Failed to retrieve taxon:gm06342 in loop_count:1 +Error: Failed to retrieve taxon:gm06304 in loop_count:1 +Error: Failed to retrieve taxon:gm06323 in loop_count:1 +Error: Failed to retrieve taxon:gm06325 in loop_count:1 +Error: Failed to retrieve taxon:anm in loop_count:1 +Error: Failed to retrieve taxon:gm06260 in loop_count:1 +Error: Failed to retrieve taxon:gm06261 in loop_count:1 +Error: Failed to retrieve taxon:gm06262 in loop_count:1 +Error: Failed to retrieve taxon:gm06269 in loop_count:1 +Error: Failed to retrieve taxon:gm06336 in loop_count:1 +Error: Failed to retrieve taxon:gm06373 in loop_count:1 +Error: Failed to retrieve taxon:gm06276 in loop_count:1 +Error: Failed to retrieve taxon:gm06319 in loop_count:1 +Error: Failed to retrieve taxon:gm06338 in loop_count:1 +Error: Failed to retrieve taxon:gm06280 in loop_count:1 +Error: Failed to retrieve taxon:gm06363 in loop_count:1 +Error: Failed to retrieve taxon:gm06364 in loop_count:1 +Error: Failed to retrieve taxon:gm06440 in loop_count:1 +Error: Failed to retrieve taxon:gm06441 in loop_count:1 +Error: Failed to retrieve taxon:gm06347 in loop_count:1 +Error: Failed to retrieve taxon:gao in loop_count:1 +Error: Failed to retrieve taxon:thx in loop_count:1 +Error: Failed to retrieve taxon:cop in loop_count:1 +Error: Failed to retrieve taxon:abd in loop_count:1 +Error: Failed to retrieve taxon:mtg in loop_count:1 +Error: Failed to retrieve taxon:mti in loop_count:1 # Error: output/tsv/pubchem_compound-atc.tsv new file size per old 28643 / 72636 = 0.39433614185803184 < 0.5 # Error: output/tsv/togovar-clinvar.tsv new file size per old 0 / 13681182 = 0.0 < 0.5 # Error: Failed to create output/tsv/togovar-clinvar.tsv or created file was empty diff --git a/log/pair_count.tsv b/log/pair_count.tsv index e84d4208..0a605ad4 100644 --- a/log/pair_count.tsv +++ b/log/pair_count.tsv @@ -1,12 +1,12 @@ affy_probeset-ncbigene.tsv 19063 -assembly_insdc-bioproject.tsv 2003442 -assembly_insdc-biosample.tsv 1997918 -assembly_insdc-insdc_master.tsv 1929712 -bioproject-biosample.tsv 2441819 -bioproject-geo_series.tsv 199634 -bioproject-pubmed.tsv 260578 -bioproject_umbrella-bioproject.tsv 101333 -biosample-bioproject.tsv 2441819 +assembly_insdc-bioproject.tsv 2015882 +assembly_insdc-biosample.tsv 2010343 +assembly_insdc-insdc_master.tsv 1941628 +bioproject-biosample.tsv 2460063 +bioproject-geo_series.tsv 199849 +bioproject-pubmed.tsv 260780 +bioproject_umbrella-bioproject.tsv 101985 +biosample-bioproject.tsv 2460063 cellosaurus-ncit_disease.tsv 68557 cellosaurus-orphanet_phenotype.tsv 38153 chebi-inchi_key.tsv 141392 @@ -33,17 +33,17 @@ cog-refseq_protein.tsv 3340026 doid-mesh.tsv 4019 doid-ncit_disease.tsv 4849 doid-omim_phenotype.tsv 5671 -ensembl_gene-affy_probeset.tsv 54210 +ensembl_gene-affy_probeset.tsv 55589 ensembl_gene-ensembl_protein.tsv 12180884 -ensembl_gene-ensembl_transcript.tsv 14437446 +ensembl_gene-ensembl_transcript.tsv 14807292 ensembl_gene-hgnc.tsv 44278 -ensembl_gene-ncbigene.tsv 6179217 +ensembl_gene-ncbigene.tsv 10441909 ensembl_gene-uniprot.tsv 4924829 ensembl_protein-ensembl_transcript.tsv 12180887 -ensembl_transcript-affy_probeset.tsv 218298 -ensembl_transcript-go.tsv 52748677 +ensembl_transcript-affy_probeset.tsv 229689 +ensembl_transcript-go.tsv 58134037 ensembl_transcript-hgnc.tsv 219677 -ensembl_transcript-refseq_rna.tsv 10179574 +ensembl_transcript-refseq_rna.tsv 14457335 gea-bioproject.tsv 141 gea-biosample.tsv 5046 glytoucan-doid.tsv 290 @@ -70,8 +70,8 @@ hmdb-pubchem_compound.tsv 104230 homologene-ncbigene.tsv 275237 hp_inheritance-omim_phenotype.tsv 8660 hp_phenotype-ncbigene.tsv 220065 -hp_phenotype-omim_phenotype.tsv 129729 -hp_phenotype-orphanet_phenotype.tsv 111606 +hp_phenotype-omim_phenotype.tsv 129693 +hp_phenotype-orphanet_phenotype.tsv 112424 insdc-bioproject.tsv 59409158 insdc-biosample.tsv 193975949 insdc_master-bioproject.tsv 1533582 @@ -100,12 +100,12 @@ medgen-omim_phenotype.tsv 11043 medgen-orphanet_phenotype.tsv 9063 mgi_gene-ensembl_gene.tsv 56590 mgi_gene-hgnc.tsv 24607 -mgi_gene-mgi_allele.tsv 100994 +mgi_gene-mgi_allele.tsv 101041 mgi_gene-ncbigene.tsv 55041 mgi_gene-uniprot.tsv 79465 -mgi_genotype-doid.tsv 7727 -mgi_genotype-mgi_allele.tsv 122855 -mgi_genotype-mp.tsv 393800 +mgi_genotype-doid.tsv 7729 +mgi_genotype-mgi_allele.tsv 122873 +mgi_genotype-mp.tsv 393875 mondo-doid.tsv 10712 mondo-hp_phenotype.tsv 574 mondo-meddra.tsv 1486 @@ -113,26 +113,26 @@ mondo-mesh.tsv 8352 mondo-omim_phenotype.tsv 9693 mondo-orphanet_phenotype.tsv 10380 nando-mondo.tsv 2390 -ncbigene-ensembl_gene.tsv 9501433 -ncbigene-ensembl_protein.tsv 11074957 -ncbigene-ensembl_transcript.tsv 11581579 +ncbigene-ensembl_gene.tsv 9501432 +ncbigene-ensembl_protein.tsv 11074956 +ncbigene-ensembl_transcript.tsv 11581578 ncbigene-flybase_gene.tsv 25078 -ncbigene-go.tsv 89652984 +ncbigene-go.tsv 89761563 ncbigene-hgnc.tsv 43773 -ncbigene-mgi_gene.tsv 71696 +ncbigene-mgi_gene.tsv 71691 ncbigene-mirbase.tsv 17541 -ncbigene-omim_gene.tsv 18412 -ncbigene-refseq_genomic.tsv 211701 -ncbigene-refseq_protein.tsv 60744557 -ncbigene-refseq_rna.tsv 59440601 +ncbigene-omim_gene.tsv 18416 +ncbigene-refseq_genomic.tsv 211702 +ncbigene-refseq_protein.tsv 60799554 +ncbigene-refseq_rna.tsv 59505889 ncbigene-rgd.tsv 42516 ncbigene-sgd.tsv 6464 ncbigene-tair.tsv 32835 -ncbigene-taxonomy.tsv 49773087 +ncbigene-taxonomy.tsv 49813830 ncbigene-vgnc.tsv 112107 ncbigene-wormbase_gene.tsv 19850 ncbigene-xenbase_gene.tsv 46228 -ncbigene-zfin_gene.tsv 27134 +ncbigene-zfin_gene.tsv 27133 ncit_disease-ncit_tissue.tsv 26233 oma_protein-ensembl_gene.tsv 2460780 oma_protein-ensembl_transcript.tsv 2804840 @@ -157,7 +157,7 @@ pubchem_compound-chebi.tsv 141021 pubchem_compound-chembl_compound.tsv 2327813 pubchem_compound-drugbank.tsv 10789 pubchem_compound-glytoucan.tsv 31767 -pubchem_compound-inchi_key.tsv 116112134 +pubchem_compound-inchi_key.tsv 116123146 pubchem_pathway-ncbigene.tsv 32308 pubchem_pathway-pathbank.tsv 69387 pubchem_pathway-pubchem_compound.tsv 1252527 @@ -189,24 +189,24 @@ rhea-go.tsv 4387 rhea-pubmed.tsv 135188 rhea-reactome_reaction.tsv 1438 rhea-uniprot.tsv 36026464 -sra_accession-bioproject.tsv 470936 -sra_accession-biosample.tsv 28310278 +sra_accession-bioproject.tsv 471606 +sra_accession-biosample.tsv 28336237 sra_accession-sra_analysis.tsv 329045 -sra_accession-sra_experiment.tsv 31194792 -sra_accession-sra_project.tsv 551578 -sra_accession-sra_run.tsv 35694120 -sra_accession-sra_sample.tsv 30501536 -sra_experiment-bioproject.tsv 27328875 -sra_experiment-biosample.tsv 27660234 -sra_experiment-sra_project.tsv 27671778 -sra_experiment-sra_sample.tsv 27671597 -sra_project-bioproject.tsv 474303 -sra_run-bioproject.tsv 29135880 -sra_run-biosample.tsv 29451030 -sra_run-sra_experiment.tsv 29515727 -sra_run-sra_project.tsv 29491521 -sra_run-sra_sample.tsv 29463585 -sra_sample-biosample.tsv 28332616 +sra_accession-sra_experiment.tsv 31280195 +sra_accession-sra_project.tsv 553418 +sra_accession-sra_run.tsv 35780851 +sra_accession-sra_sample.tsv 30576968 +sra_experiment-bioproject.tsv 27361366 +sra_experiment-biosample.tsv 27685669 +sra_experiment-sra_project.tsv 27704269 +sra_experiment-sra_sample.tsv 27704088 +sra_project-bioproject.tsv 474973 +sra_run-bioproject.tsv 29170121 +sra_run-biosample.tsv 29477337 +sra_run-sra_experiment.tsv 29550412 +sra_run-sra_project.tsv 29525762 +sra_run-sra_sample.tsv 29496100 +sra_sample-biosample.tsv 28358575 swisslipids-chebi.tsv 4276 swisslipids-hmdb.tsv 26026 swisslipids-inchi_key.tsv 593209 @@ -249,4 +249,4 @@ wikipathways-hmdb.tsv 4013 wikipathways-lipidmaps.tsv 1361 wikipathways-ncbigene.tsv 29837 wikipathways-uniprot.tsv 33518 -total 4645672567 +total 4660924434 diff --git a/log/pair_count_history.tsv b/log/pair_count_history.tsv index 8bfc9db0..163266be 100644 --- a/log/pair_count_history.tsv +++ b/log/pair_count_history.tsv @@ -19,4 +19,5 @@ Date affy_probeset-ncbigene assembly_insdc-bioproject assembly_insdc-biosample a 2023-12-16 19063 1945629 1957294 1889897 2381354 197910 259137 100626 2381354 68557 38153 141392 34314 3091832 8206 11766 1915138 47707 13954 1878362 433124 1439514 2126 12004 11110 33678 3448 8014 8178 1711989 115826 3340026 4019 4849 5671 54210 12180884 14437446 44278 6179217 4924829 12180887 218298 52748677 219677 10179574 141 5046 290 1270 49240 35219 1995 40970 43667 21167 1325 23383 1912 43615 16942 33774 28381 18954 20365 13701 217899 522 104230 275237 8660 220065 129729 111606 59409158 193975949 1533582 1533178 30407 1402682 20191 1283 109057 435537 1275 718778680 199 305 130 12890 47841 12345 137319849 6318 16674 16849 21567 7229 11043 9063 56590 24607 100770 55041 79466 7724 122809 393496 10712 574 1486 8352 9693 10380 2390 9485712 11058301 11567584 25107 68314687 43739 71696 17541 18398 211693 60108727 58752275 42517 6464 32835 49342670 112107 19850 46225 27131 26233 2460780 2804840 4800754 18299774 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 1461 4812 141021 2327813 10789 31767 116072087 32308 69387 1252527 2814 620221 1196 264859 12983 40546 332 400679 861452 198020 3335 14362 185 665149 179950008 267549861 227165 57852462 188790 5817042 50390902 57882313 201816 7528 4387 135188 1438 36026464 465654 27808778 270359 30935643 547096 35427306 30173279 26934437 27243277 27277338 27277152 465670 28736336 29024695 29111866 29091975 29059787 27817712 4276 26026 593209 49092 720705 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 4616648409 2586 10146 65606 39736080 9437437 9647434 9647434 466768100 81875 284374766 230955 13734202 12027805 16106 7021 8188 355933 259506 49539508 251702059 437326 151 505473 11468 951 4014 1361 29837 33519 2023-12-23 19063 1978955 1974704 1907175 2400240 198341 259732 100932 2400240 68557 38153 141392 34314 3091832 8206 11766 1915138 47707 13954 1878362 433124 1439514 2126 12004 11110 33678 3448 8014 8178 1711989 115826 3340026 4019 4849 5671 54210 12180884 14437446 44278 6179217 4924829 12180887 218298 52748677 219677 10179574 141 5046 290 1270 49240 35219 1995 40970 43667 21167 1325 23383 1912 43615 16942 33774 28381 18954 20365 13701 217899 522 104230 275237 8660 220065 129729 111606 59409158 193975949 1533582 1533178 30407 1402682 20191 1283 109057 435537 1275 718778680 199 305 130 12896 47881 12345 137319849 6318 16674 16849 21567 7229 11043 9063 56590 24607 100839 55041 79466 7726 122846 393676 10712 574 1486 8352 9693 10380 2390 9483591 11050619 11556151 25107 77082572 43773 71696 17541 18404 211695 60300956 58967151 42516 6464 32835 49469530 112107 19850 46225 27132 26233 2460780 2804840 4800754 18299774 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 1461 4812 141021 2327813 10789 31767 116110122 32308 69387 1252527 2814 620221 1196 264859 12983 40546 332 400679 861452 198020 3335 14362 185 665149 179950008 267549861 227165 57852462 188790 5817042 50390902 57882313 201816 7528 4387 135188 1438 36026464 466119 27856390 270359 31020050 548219 35512895 30252693 26974495 27280212 27317396 27317210 466135 28778904 29061897 29156098 29134543 29100629 27865324 4276 26026 593209 49132 720705 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 4626785801 2586 10146 65606 39736080 9437437 9647434 9647434 466768100 81875 284374766 230955 13734202 12027805 16106 7021 8188 355933 259506 49539508 251702059 437326 151 505473 11471 951 4013 1361 29837 33518 2023-12-30 19063 1989580 1984072 1916377 2410970 198656 259987 101117 2410970 68557 38153 141392 34314 3091832 8206 11766 1915138 47707 13954 1878362 433124 1439514 2126 12004 11110 33678 3448 8014 8178 1711989 115826 3340026 4019 4849 5671 54210 12180884 14437446 44278 6179217 4924829 12180887 218298 52748677 219677 10179574 141 5046 290 1270 49240 35219 1995 40970 43667 21167 1325 23383 1912 43615 16942 33774 28381 18954 20365 13701 217899 522 104230 275237 8660 220065 129729 111606 59409158 193975949 1533582 1533178 30407 1402682 20191 1283 109057 435537 1275 718778680 199 305 130 12896 47886 12345 137319849 6318 16674 16849 21567 7229 11043 9063 56590 24607 100920 55041 79465 7726 122848 393685 10712 574 1486 8352 9693 10380 2390 9483561 11050619 11556119 25078 85487668 43773 71696 17541 18410 211699 60665296 59361685 42516 6464 32835 49723430 112107 19850 46225 27134 26233 2460780 2804840 4800754 18299774 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 1461 4812 141021 2327813 10789 31767 116110427 32308 69387 1252527 2814 620221 1196 264859 12983 40546 332 400679 861452 198020 3335 14362 185 665149 179950008 267549861 227165 57852462 188790 5817042 50390902 57882313 201816 7528 4387 135188 1438 36026464 470711 28283897 329045 31120557 550005 35615159 30437562 27297751 27636085 27640654 27640473 474078 29102112 29426498 29476791 29457753 29431038 28306235 4276 26026 593209 49166 720705 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 4640572273 2586 10146 65606 39736080 9437437 9647434 9647434 466768100 81875 284374766 230955 13734202 12027805 16106 7021 8188 355933 259506 49539508 251702059 437326 151 505473 11471 951 4013 1361 29837 33518 -2024-01-06 19063 2003442 1997918 1929712 2441819 199634 260578 101333 2441819 68557 38153 141392 34314 3091832 8206 11766 1915138 47707 13954 1878362 433124 1439514 2126 12004 11110 33678 3448 8014 8178 1711989 115826 3340026 4019 4849 5671 54210 12180884 14437446 44278 6179217 4924829 12180887 218298 52748677 219677 10179574 141 5046 290 1270 49240 35219 1995 40970 43667 21167 1325 23383 1912 43615 16942 33774 28381 18954 20365 13701 217899 522 104230 275237 8660 220065 129729 111606 59409158 193975949 1533582 1533178 30407 1402682 20191 1283 109057 435537 1275 718778680 199 305 130 12896 47886 12345 137319849 6318 16674 16849 21567 7229 11043 9063 56590 24607 100994 55041 79465 7727 122855 393800 10712 574 1486 8352 9693 10380 2390 9501433 11074957 11581579 25078 89652984 43773 71696 17541 18412 211701 60744557 59440601 42516 6464 32835 49773087 112107 19850 46228 27134 26233 2460780 2804840 4800754 18299774 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 1461 4812 141021 2327813 10789 31767 116112134 32308 69387 1252527 2814 620221 1196 264859 12983 40546 332 400679 861452 198020 3335 14362 185 665149 179950008 267549861 227165 57852462 188790 5817042 50390902 57882313 201816 7528 4387 135188 1438 36026464 470936 28310278 329045 31194792 551578 35694120 30501536 27328875 27660234 27671778 27671597 474303 29135880 29451030 29515727 29491521 29463585 28332616 4276 26026 593209 49176 720705 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 4645672567 2586 10146 65606 39736080 9437437 9647434 9647434 466768100 81875 284374766 230955 13734202 12027805 16106 7021 8188 355933 259506 49539508 251702059 437326 151 505473 11471 951 4013 1361 29837 33518 \ No newline at end of file +2024-01-06 19063 2003442 1997918 1929712 2441819 199634 260578 101333 2441819 68557 38153 141392 34314 3091832 8206 11766 1915138 47707 13954 1878362 433124 1439514 2126 12004 11110 33678 3448 8014 8178 1711989 115826 3340026 4019 4849 5671 54210 12180884 14437446 44278 6179217 4924829 12180887 218298 52748677 219677 10179574 141 5046 290 1270 49240 35219 1995 40970 43667 21167 1325 23383 1912 43615 16942 33774 28381 18954 20365 13701 217899 522 104230 275237 8660 220065 129729 111606 59409158 193975949 1533582 1533178 30407 1402682 20191 1283 109057 435537 1275 718778680 199 305 130 12896 47886 12345 137319849 6318 16674 16849 21567 7229 11043 9063 56590 24607 100994 55041 79465 7727 122855 393800 10712 574 1486 8352 9693 10380 2390 9501433 11074957 11581579 25078 89652984 43773 71696 17541 18412 211701 60744557 59440601 42516 6464 32835 49773087 112107 19850 46228 27134 26233 2460780 2804840 4800754 18299774 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 1461 4812 141021 2327813 10789 31767 116112134 32308 69387 1252527 2814 620221 1196 264859 12983 40546 332 400679 861452 198020 3335 14362 185 665149 179950008 267549861 227165 57852462 188790 5817042 50390902 57882313 201816 7528 4387 135188 1438 36026464 470936 28310278 329045 31194792 551578 35694120 30501536 27328875 27660234 27671778 27671597 474303 29135880 29451030 29515727 29491521 29463585 28332616 4276 26026 593209 49176 720705 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 4645672567 2586 10146 65606 39736080 9437437 9647434 9647434 466768100 81875 284374766 230955 13734202 12027805 16106 7021 8188 355933 259506 49539508 251702059 437326 151 505473 11471 951 4013 1361 29837 33518 +2024-01-13 19063 2015882 2010343 1941628 2460063 199849 260780 101985 2460063 68557 38153 141392 34314 3091832 8206 11766 1915138 47707 13954 1878362 433124 1439514 2126 12004 11110 33678 3448 8014 8178 1711989 115826 3340026 4019 4849 5671 55589 12180884 14807292 44278 10441909 4924829 12180887 229689 58134037 219677 14457335 141 5046 290 1270 49240 35219 1995 40970 43667 21167 1325 23383 1912 43615 16942 33774 28381 18954 20365 13701 217899 522 104230 275237 8660 220065 129693 112424 59409158 193975949 1533582 1533178 30407 1402682 20191 1283 109057 435537 1275 718778680 199 305 130 12896 47886 12345 137319849 6318 16674 16849 21567 7229 11043 9063 56590 24607 101041 55041 79465 7729 122873 393875 10712 574 1486 8352 9693 10380 2390 9501432 11074956 11581578 25078 89761563 43773 71691 17541 18416 211702 60799554 59505889 42516 6464 32835 49813830 112107 19850 46228 27133 26233 2460780 2804840 4800754 18299774 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 1461 4812 141021 2327813 10789 31767 116123146 32308 69387 1252527 2814 620221 1196 264859 12983 40546 332 400679 861452 198020 3335 14362 185 665149 179950008 267549861 227165 57852462 188790 5817042 50390902 57882313 201816 7528 4387 135188 1438 36026464 471606 28336237 329045 31280195 553418 35780851 30576968 27361366 27685669 27704269 27704088 474973 29170121 29477337 29550412 29525762 29496100 28358575 4276 26026 593209 49176 720705 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 4660924434 2586 10146 65606 39736080 9437437 9647434 9647434 466768100 81875 284374766 230955 13734202 12027805 16106 7021 8188 355933 259506 49539508 251702059 437326 151 505473 11471 951 4013 1361 29837 33518 \ No newline at end of file diff --git a/log/update.log b/log/update.log index 53db1647..e53c7cee 100644 --- a/log/update.log +++ b/log/update.log @@ -1,9 +1,9 @@ -*** Started: 2024-01-05T17:00:16 *** +*** Started: 2024-01-12T17:00:16 *** ## Prepare input files for Bioproject # Checking lock file input/bioproject/download.lock for download -# Local file time: 2023-12-28 20:57:30 +0900 (input/bioproject/bioproject.xml) -# Remote file time: 2024-01-04 12:04:15 +0000 (https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml) +# Local file time: 2024-01-04 21:04:15 +0900 (input/bioproject/bioproject.xml) +# Remote file time: 2024-01-09 11:54:27 +0000 (https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/bioproject https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml python bin/bioproject_xml2tsv.py input/bioproject/bioproject.xml > input/bioproject/bioproject.tsv # Overwriting timestamp of the input/bioproject/download.lock @@ -16,7 +16,7 @@ python bin/bioproject_xml2tsv.py input/bioproject/bioproject.xml > input/bioproj # Preserving timestamp of the input/cellosaurus/download.lock ## Prepare input files for Ensembl # Checking lock file input/ensembl/download.lock for download -# File input/ensembl/taxonomy.txt is created 6.995200223755093 days ago (will be updated when >5 days) +# File input/ensembl/taxonomy.txt is created 6.999899483836493 days ago (will be updated when >5 days) sparql_csv2tsv.sh input/ensembl/taxonomy.rq https://rdfportal.org/ebi/sparql > input/ensembl/taxonomy.txt # Overwriting timestamp of the input/ensembl/download.lock ## Prepare input files for HMDB @@ -36,15 +36,13 @@ sparql_csv2tsv.sh input/ensembl/taxonomy.rq https://rdfportal.org/ebi/sparql > i ## Prepare input files for HP Phenotype # Checking lock file input/hp_phenotype/download.lock for download # Local file time: 2023-10-10 05:01:55 +0900 (input/hp_phenotype/phenotype.hpoa) -# Remote file time: 2023-10-09 20:01:55 +0000 (http://purl.obolibrary.org/obo/hp/hpoa/phenotype.hpoa) -# Local file size: 31698761 (input/hp_phenotype/phenotype.hpoa) -# Remote file size: 31698761 (http://purl.obolibrary.org/obo/hp/hpoa/phenotype.hpoa) +# Remote file time: 2024-01-11 18:11:34 +0000 (http://purl.obolibrary.org/obo/hp/hpoa/phenotype.hpoa) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/hp_phenotype http://purl.obolibrary.org/obo/hp/hpoa/phenotype.hpoa # Local file time: 2023-10-10 04:59:50 +0900 (input/hp_phenotype/genes_to_phenotype.txt) -# Remote file time: 2023-10-09 19:59:50 +0000 (http://purl.obolibrary.org/obo/hp/hpoa/genes_to_phenotype.txt) -# Local file size: 18567187 (input/hp_phenotype/genes_to_phenotype.txt) -# Remote file size: 18567187 (http://purl.obolibrary.org/obo/hp/hpoa/genes_to_phenotype.txt) +# Remote file time: 2024-01-11 18:11:20 +0000 (http://purl.obolibrary.org/obo/hp/hpoa/genes_to_phenotype.txt) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/hp_phenotype http://purl.obolibrary.org/obo/hp/hpoa/genes_to_phenotype.txt bin/sparql_csv2tsv.sh bin/sparql/hp_category.rq https://rdfportal.org/bioportal/sparql > input/hp_phenotype/hp_category.tsv -# Preserving timestamp of the input/hp_phenotype/download.lock +# Overwriting timestamp of the input/hp_phenotype/download.lock ## Prepare input files for COG # Checking lock file input/cog/download.lock for download # Local file time: 2020-09-11 10:37:40 +0900 (input/cog/cog-20.cog.csv) @@ -61,49 +59,49 @@ bin/sparql_csv2tsv.sh bin/sparql/hp_category.rq https://rdfportal.org/bioportal/ # Preserving timestamp of the input/interpro/download.lock ## Prepare input files for MGI_GENE # Checking lock file input/mgi_gene/download.lock for download -# Local file time: 2023-12-25 22:06:55 +0900 (input/mgi_gene/MRK_List2.rpt) -# Remote file time: 2024-01-01 13:08:34 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt) +# Local file time: 2024-01-01 22:08:34 +0900 (input/mgi_gene/MRK_List2.rpt) +# Remote file time: 2024-01-08 13:08:33 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt -# Local file time: 2023-12-25 22:03:58 +0900 (input/mgi_gene/MGI_Gene_Model_Coord.rpt) -# Remote file time: 2024-01-01 13:04:44 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt) +# Local file time: 2024-01-01 22:04:44 +0900 (input/mgi_gene/MGI_Gene_Model_Coord.rpt) +# Remote file time: 2024-01-08 13:04:49 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt -# Local file time: 2023-12-25 22:07:05 +0900 (input/mgi_gene/MRK_SwissProt_TrEMBL.rpt) -# Remote file time: 2024-01-01 13:08:51 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt) +# Local file time: 2024-01-01 22:08:51 +0900 (input/mgi_gene/MRK_SwissProt_TrEMBL.rpt) +# Remote file time: 2024-01-08 13:08:45 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt -# Local file time: 2023-12-25 22:03:07 +0900 (input/mgi_gene/HGNC_AllianceHomology.rpt) -# Remote file time: 2024-01-01 13:03:41 +0000 (https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt) +# Local file time: 2024-01-01 22:03:41 +0900 (input/mgi_gene/HGNC_AllianceHomology.rpt) +# Remote file time: 2024-01-08 13:03:48 +0000 (https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt -# Local file time: 2023-12-25 22:05:53 +0900 (input/mgi_gene/MGI_PhenotypicAllele.rpt) -# Remote file time: 2024-01-01 13:07:43 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt) +# Local file time: 2024-01-01 22:07:43 +0900 (input/mgi_gene/MGI_PhenotypicAllele.rpt) +# Remote file time: 2024-01-08 13:07:39 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt # Overwriting timestamp of the input/mgi_gene/download.lock ## Prepare input files for MGI_GENOTYPE # Checking lock file input/mgi_genotype/download.lock for download -# Local file time: 2023-12-25 22:03:43 +0900 (input/mgi_genotype/MGI_DiseaseGeneModel.rpt) -# Remote file time: 2024-01-01 13:04:29 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt) +# Local file time: 2024-01-01 22:04:29 +0900 (input/mgi_genotype/MGI_DiseaseGeneModel.rpt) +# Remote file time: 2024-01-08 13:04:29 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_genotype https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt ruby bin/query_mousemine.rb > input/mgi_genotype/mousemine_genotype.tsv # Overwriting timestamp of the input/mgi_genotype/download.lock ## Prepare input files for NCBI Gene # Checking lock file input/ncbigene/download.lock for download -# Local file time: 2023-12-29 15:52:06 +0900 (input/ncbigene/gene2refseq.gz) -# Remote file time: 2024-01-05 06:24:23 +0000 (https://ftp.ncbi.nih.gov/gene/DATA/gene2refseq.gz) +# Local file time: 2024-01-05 15:24:23 +0900 (input/ncbigene/gene2refseq.gz) +# Remote file time: 2024-01-11 04:11:27 +0000 (https://ftp.ncbi.nih.gov/gene/DATA/gene2refseq.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nih.gov/gene/DATA/gene2refseq.gz gzip -dc input/ncbigene/gene2refseq.gz > input/ncbigene/gene2refseq -# Local file time: 2023-12-29 15:48:13 +0900 (input/ncbigene/gene2ensembl.gz) -# Remote file time: 2024-01-05 06:20:17 +0000 (https://ftp.ncbi.nih.gov/gene/DATA/gene2ensembl.gz) +# Local file time: 2024-01-05 15:20:17 +0900 (input/ncbigene/gene2ensembl.gz) +# Remote file time: 2024-01-11 04:04:50 +0000 (https://ftp.ncbi.nih.gov/gene/DATA/gene2ensembl.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nih.gov/gene/DATA/gene2ensembl.gz gzip -dc input/ncbigene/gene2ensembl.gz > input/ncbigene/gene2ensembl -# Local file time: 2023-12-29 15:49:36 +0900 (input/ncbigene/gene2go.gz) -# Remote file time: 2024-01-05 06:21:50 +0000 (https://ftp.ncbi.nih.gov/gene/DATA/gene2go.gz) +# Local file time: 2024-01-05 15:21:50 +0900 (input/ncbigene/gene2go.gz) +# Remote file time: 2024-01-11 04:07:22 +0000 (https://ftp.ncbi.nih.gov/gene/DATA/gene2go.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nih.gov/gene/DATA/gene2go.gz gzip -dc input/ncbigene/gene2go.gz > input/ncbigene/gene2go -# Local file time: 2023-12-29 15:57:51 +0900 (input/ncbigene/Homo_sapiens.gene_info.gz) -# Remote file time: 2024-01-05 06:30:25 +0000 (https://ftp.ncbi.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz) +# Local file time: 2024-01-05 15:30:25 +0900 (input/ncbigene/Homo_sapiens.gene_info.gz) +# Remote file time: 2024-01-11 04:23:25 +0000 (https://ftp.ncbi.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz gzip -dc input/ncbigene/Homo_sapiens.gene_info.gz > input/ncbigene/Homo_sapiens.gene_info -# Local file time: 2023-12-29 15:53:39 +0900 (input/ncbigene/gene_info.gz) -# Remote file time: 2024-01-05 06:26:01 +0000 (https://ftp.ncbi.nih.gov/gene/DATA/gene_info.gz) +# Local file time: 2024-01-05 15:26:01 +0900 (input/ncbigene/gene_info.gz) +# Remote file time: 2024-01-11 04:14:26 +0000 (https://ftp.ncbi.nih.gov/gene/DATA/gene_info.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nih.gov/gene/DATA/gene_info.gz gzip -dc input/ncbigene/gene_info.gz > input/ncbigene/gene_info # Overwriting timestamp of the input/ncbigene/download.lock @@ -182,8 +180,8 @@ gzip -dc input/ncbigene/gene_info.gz > input/ncbigene/gene_info # Preserving timestamp of the input/reactome/download.lock ## Prepare input files for RefSeq Protein # Checking lock file input/refseq_protein/download.lock for download -# Local file time: 2023-12-27 19:29:09 +0900 (input/refseq_protein/gene_refseq_uniprotkb_collab.gz) -# Remote file time: 2024-01-03 10:30:41 +0000 (https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz) +# Local file time: 2024-01-03 19:30:41 +0900 (input/refseq_protein/gene_refseq_uniprotkb_collab.gz) +# Remote file time: 2024-01-10 10:29:25 +0000 (https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/refseq_protein https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz # Overwriting timestamp of the input/refseq_protein/download.lock ## Prepare input files for RefSeq RNA @@ -210,8 +208,8 @@ wget --quiet --recursive --no-parent --no-directories --timestamping --no-check- # Preserving timestamp of the input/rhea/download.lock ## Prepare input files for SRA # Checking lock file input/sra/download.lock for download -# Local file time: 2023-12-29 07:05:43 +0900 (input/sra/SRA_Accessions.tab) -# Remote file time: 2024-01-04 22:36:25 +0000 (https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab) +# Local file time: 2024-01-05 07:36:25 +0900 (input/sra/SRA_Accessions.tab) +# Remote file time: 2024-01-11 22:59:07 +0000 (https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/sra https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab # Overwriting timestamp of the input/sra/download.lock ## Prepare input files for SwissLipids @@ -226,89 +224,89 @@ gzip -dc input/swisslipids/lipids2uniprot.tsv.gz > input/swisslipids/lipids2unip # Preserving timestamp of the input/uniprot/download.lock ## Prepare input files for Taxonomy # Checking lock file input/taxonomy/download.lock for download -# Local file time: 2023-12-29 17:29:09 +0900 (input/taxonomy/taxdump.tar.gz) -# Remote file time: 2024-01-05 08:29:03 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz) +# Local file time: 2024-01-05 17:29:03 +0900 (input/taxonomy/taxdump.tar.gz) +# Remote file time: 2024-01-12 08:29:13 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/taxonomy https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz mkdir -p input/taxonomy/taxdump && tar xzf input/taxonomy/taxdump.tar.gz -C input/taxonomy/taxdump/ # Overwriting timestamp of the input/taxonomy/download.lock ### Update TSV for affy_probeset-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/affy_probeset-ncbigene.tsv is newer than config/affy_probeset-ncbigene/config.yaml # File output/tsv/affy_probeset-ncbigene.tsv has no timestamp file -# File output/tsv/affy_probeset-ncbigene.tsv is created 6.9852018850250115 days ago (will be updated when >5 days) +# File output/tsv/affy_probeset-ncbigene.tsv is created 6.9986303684446645 days ago (will be updated when >5 days) ## Update config/affy_probeset-ncbigene/config.yaml => output/tsv/affy_probeset-ncbigene.tsv -< 2024-01-05T17:52:07 affy_probeset-ncbigene +< 2024-01-12T17:50:09 affy_probeset-ncbigene togoid-config config/affy_probeset-ncbigene update # Success: output/tsv/affy_probeset-ncbigene.tsv is updated -> 2024-01-05T17:52:08 affy_probeset-ncbigene +> 2024-01-12T17:50:10 affy_probeset-ncbigene ### Update TSV for assembly_insdc-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-bioproject.tsv is newer than config/assembly_insdc-bioproject/config.yaml # File output/tsv/assembly_insdc-bioproject.tsv has no timestamp file -# File output/tsv/assembly_insdc-bioproject.tsv is created 6.985188725545846 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-bioproject.tsv is created 6.998613056954688 days ago (will be updated when >5 days) ## Update config/assembly_insdc-bioproject/config.yaml => output/tsv/assembly_insdc-bioproject.tsv -< 2024-01-05T17:52:08 assembly_insdc-bioproject +< 2024-01-12T17:50:10 assembly_insdc-bioproject togoid-config config/assembly_insdc-bioproject update # Success: output/tsv/assembly_insdc-bioproject.tsv is updated -> 2024-01-05T17:52:10 assembly_insdc-bioproject +> 2024-01-12T17:50:12 assembly_insdc-bioproject ### Update TSV for assembly_insdc-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-biosample.tsv is newer than config/assembly_insdc-biosample/config.yaml # File output/tsv/assembly_insdc-biosample.tsv has no timestamp file -# File output/tsv/assembly_insdc-biosample.tsv is created 6.9851924018721645 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-biosample.tsv is created 6.998611571353564 days ago (will be updated when >5 days) ## Update config/assembly_insdc-biosample/config.yaml => output/tsv/assembly_insdc-biosample.tsv -< 2024-01-05T17:52:10 assembly_insdc-biosample +< 2024-01-12T17:50:12 assembly_insdc-biosample togoid-config config/assembly_insdc-biosample update # Success: output/tsv/assembly_insdc-biosample.tsv is updated -> 2024-01-05T17:52:12 assembly_insdc-biosample +> 2024-01-12T17:50:14 assembly_insdc-biosample ### Update TSV for assembly_insdc-insdc_master if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-insdc_master.tsv is newer than config/assembly_insdc-insdc_master/config.yaml # File output/tsv/assembly_insdc-insdc_master.tsv has no timestamp file -# File output/tsv/assembly_insdc-insdc_master.tsv is created 6.9851932371464 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-insdc_master.tsv is created 6.998609461963969 days ago (will be updated when >5 days) ## Update config/assembly_insdc-insdc_master/config.yaml => output/tsv/assembly_insdc-insdc_master.tsv -< 2024-01-05T17:52:12 assembly_insdc-insdc_master +< 2024-01-12T17:50:14 assembly_insdc-insdc_master togoid-config config/assembly_insdc-insdc_master update # Success: output/tsv/assembly_insdc-insdc_master.tsv is updated -> 2024-01-05T17:52:14 assembly_insdc-insdc_master +> 2024-01-12T17:50:16 assembly_insdc-insdc_master ### Update TSV for bioproject-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-biosample.tsv is newer than config/bioproject-biosample/config.yaml # File output/tsv/bioproject-biosample.tsv is older than input/bioproject/download.lock ## Update config/bioproject-biosample/config.yaml => output/tsv/bioproject-biosample.tsv -< 2024-01-05T17:52:14 bioproject-biosample +< 2024-01-12T17:50:16 bioproject-biosample togoid-config config/bioproject-biosample update # Success: output/tsv/bioproject-biosample.tsv is updated -> 2024-01-05T17:52:16 bioproject-biosample +> 2024-01-12T17:50:18 bioproject-biosample ### Update TSV for bioproject-geo_series if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-geo_series.tsv is newer than config/bioproject-geo_series/config.yaml # File output/tsv/bioproject-geo_series.tsv is older than input/bioproject/download.lock ## Update config/bioproject-geo_series/config.yaml => output/tsv/bioproject-geo_series.tsv -< 2024-01-05T17:52:16 bioproject-geo_series +< 2024-01-12T17:50:18 bioproject-geo_series togoid-config config/bioproject-geo_series update # Success: output/tsv/bioproject-geo_series.tsv is updated -> 2024-01-05T17:52:18 bioproject-geo_series +> 2024-01-12T17:50:20 bioproject-geo_series ### Update TSV for bioproject-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-pubmed.tsv is newer than config/bioproject-pubmed/config.yaml # File output/tsv/bioproject-pubmed.tsv is older than input/bioproject/download.lock ## Update config/bioproject-pubmed/config.yaml => output/tsv/bioproject-pubmed.tsv -< 2024-01-05T17:52:18 bioproject-pubmed +< 2024-01-12T17:50:20 bioproject-pubmed togoid-config config/bioproject-pubmed update # Success: output/tsv/bioproject-pubmed.tsv is updated -> 2024-01-05T17:52:19 bioproject-pubmed +> 2024-01-12T17:50:21 bioproject-pubmed ### Update TSV for bioproject_umbrella-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject_umbrella-bioproject.tsv is newer than config/bioproject_umbrella-bioproject/config.yaml # File output/tsv/bioproject_umbrella-bioproject.tsv has no timestamp file -# File output/tsv/bioproject_umbrella-bioproject.tsv is created 6.985204159672546 days ago (will be updated when >5 days) +# File output/tsv/bioproject_umbrella-bioproject.tsv is created 6.998626202917952 days ago (will be updated when >5 days) ## Update config/bioproject_umbrella-bioproject/config.yaml => output/tsv/bioproject_umbrella-bioproject.tsv -< 2024-01-05T17:52:19 bioproject_umbrella-bioproject +< 2024-01-12T17:50:21 bioproject_umbrella-bioproject togoid-config config/bioproject_umbrella-bioproject update # Success: output/tsv/bioproject_umbrella-bioproject.tsv is updated -> 2024-01-05T17:52:19 bioproject_umbrella-bioproject +> 2024-01-12T17:50:21 bioproject_umbrella-bioproject ### Update TSV for biosample-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/biosample-bioproject.tsv is newer than config/biosample-bioproject/config.yaml # File output/tsv/biosample-bioproject.tsv has no timestamp file -# File output/tsv/biosample-bioproject.tsv is created 6.985184480134351 days ago (will be updated when >5 days) +# File output/tsv/biosample-bioproject.tsv is created 6.998604730405695 days ago (will be updated when >5 days) ## Update config/biosample-bioproject/config.yaml => output/tsv/biosample-bioproject.tsv -< 2024-01-05T17:52:19 biosample-bioproject +< 2024-01-12T17:50:21 biosample-bioproject togoid-config config/biosample-bioproject update # Success: output/tsv/biosample-bioproject.tsv is updated -> 2024-01-05T17:52:22 biosample-bioproject +> 2024-01-12T17:50:24 biosample-bioproject ### Update TSV for cellosaurus-ncit_disease if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/cellosaurus-ncit_disease.tsv is newer than config/cellosaurus-ncit_disease/config.yaml # File output/tsv/cellosaurus-ncit_disease.tsv is newer than input/cellosaurus/download.lock @@ -320,174 +318,174 @@ togoid-config config/biosample-bioproject update ### Update TSV for chebi-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chebi-inchi_key.tsv is newer than config/chebi-inchi_key/config.yaml # File output/tsv/chebi-inchi_key.tsv has no timestamp file -# File output/tsv/chebi-inchi_key.tsv is created 6.985202276586505 days ago (will be updated when >5 days) +# File output/tsv/chebi-inchi_key.tsv is created 6.998624210267628 days ago (will be updated when >5 days) ## Update config/chebi-inchi_key/config.yaml => output/tsv/chebi-inchi_key.tsv -< 2024-01-05T17:52:22 chebi-inchi_key +< 2024-01-12T17:50:24 chebi-inchi_key togoid-config config/chebi-inchi_key update # Success: output/tsv/chebi-inchi_key.tsv is updated -> 2024-01-05T17:52:23 chebi-inchi_key +> 2024-01-12T17:50:24 chebi-inchi_key ### Update TSV for chembl_compound-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-chebi.tsv is newer than config/chembl_compound-chebi/config.yaml # File output/tsv/chembl_compound-chebi.tsv has no timestamp file -# File output/tsv/chembl_compound-chebi.tsv is created 6.985205524048414 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-chebi.tsv is created 6.998624964091979 days ago (will be updated when >5 days) ## Update config/chembl_compound-chebi/config.yaml => output/tsv/chembl_compound-chebi.tsv -< 2024-01-05T17:52:23 chembl_compound-chebi +< 2024-01-12T17:50:24 chembl_compound-chebi togoid-config config/chembl_compound-chebi update # Success: output/tsv/chembl_compound-chebi.tsv is updated -> 2024-01-05T17:52:23 chembl_compound-chebi +> 2024-01-12T17:50:25 chembl_compound-chebi ### Update TSV for chembl_compound-chembl_target if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-chembl_target.tsv is newer than config/chembl_compound-chembl_target/config.yaml # File output/tsv/chembl_compound-chembl_target.tsv has no timestamp file -# File output/tsv/chembl_compound-chembl_target.tsv is created 6.9741974069343176 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-chembl_target.tsv is created 6.987576219447789 days ago (will be updated when >5 days) ## Update config/chembl_compound-chembl_target/config.yaml => output/tsv/chembl_compound-chembl_target.tsv -< 2024-01-05T17:52:23 chembl_compound-chembl_target +< 2024-01-12T17:50:25 chembl_compound-chembl_target togoid-config config/chembl_compound-chembl_target update # Success: output/tsv/chembl_compound-chembl_target.tsv is updated -> 2024-01-05T18:08:19 chembl_compound-chembl_target +> 2024-01-12T18:06:17 chembl_compound-chembl_target ### Update TSV for chembl_compound-drugbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-drugbank.tsv is newer than config/chembl_compound-drugbank/config.yaml # File output/tsv/chembl_compound-drugbank.tsv has no timestamp file -# File output/tsv/chembl_compound-drugbank.tsv is created 6.98525047592514 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-drugbank.tsv is created 6.998582597399317 days ago (will be updated when >5 days) ## Update config/chembl_compound-drugbank/config.yaml => output/tsv/chembl_compound-drugbank.tsv -< 2024-01-05T18:08:19 chembl_compound-drugbank +< 2024-01-12T18:06:17 chembl_compound-drugbank togoid-config config/chembl_compound-drugbank update # Success: output/tsv/chembl_compound-drugbank.tsv is updated -> 2024-01-05T18:08:19 chembl_compound-drugbank +> 2024-01-12T18:06:17 chembl_compound-drugbank ### Update TSV for chembl_compound-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-hmdb.tsv is newer than config/chembl_compound-hmdb/config.yaml # File output/tsv/chembl_compound-hmdb.tsv has no timestamp file -# File output/tsv/chembl_compound-hmdb.tsv is created 6.985250558039247 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-hmdb.tsv is created 6.998583439711851 days ago (will be updated when >5 days) ## Update config/chembl_compound-hmdb/config.yaml => output/tsv/chembl_compound-hmdb.tsv -< 2024-01-05T18:08:19 chembl_compound-hmdb +< 2024-01-12T18:06:17 chembl_compound-hmdb togoid-config config/chembl_compound-hmdb update # Success: output/tsv/chembl_compound-hmdb.tsv is updated -> 2024-01-05T18:08:19 chembl_compound-hmdb +> 2024-01-12T18:06:18 chembl_compound-hmdb ### Update TSV for chembl_compound-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-inchi_key.tsv is newer than config/chembl_compound-inchi_key/config.yaml # File output/tsv/chembl_compound-inchi_key.tsv has no timestamp file -# File output/tsv/chembl_compound-inchi_key.tsv is created 6.9852072937416665 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-inchi_key.tsv is created 6.998541416611852 days ago (will be updated when >5 days) ## Update config/chembl_compound-inchi_key/config.yaml => output/tsv/chembl_compound-inchi_key.tsv -< 2024-01-05T18:08:19 chembl_compound-inchi_key +< 2024-01-12T18:06:18 chembl_compound-inchi_key togoid-config config/chembl_compound-inchi_key update # Success: output/tsv/chembl_compound-inchi_key.tsv is updated -> 2024-01-05T18:08:24 chembl_compound-inchi_key +> 2024-01-12T18:06:22 chembl_compound-inchi_key ### Update TSV for chembl_compound-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-mesh.tsv is newer than config/chembl_compound-mesh/config.yaml # File output/tsv/chembl_compound-mesh.tsv has no timestamp file -# File output/tsv/chembl_compound-mesh.tsv is created 6.985249952055961 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-mesh.tsv is created 6.9985871832799535 days ago (will be updated when >5 days) ## Update config/chembl_compound-mesh/config.yaml => output/tsv/chembl_compound-mesh.tsv -< 2024-01-05T18:08:24 chembl_compound-mesh +< 2024-01-12T18:06:22 chembl_compound-mesh togoid-config config/chembl_compound-mesh update # Success: output/tsv/chembl_compound-mesh.tsv is updated -> 2024-01-05T18:08:24 chembl_compound-mesh +> 2024-01-12T18:06:22 chembl_compound-mesh ### Update TSV for chembl_compound-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pdb_ccd.tsv is newer than config/chembl_compound-pdb_ccd/config.yaml # File output/tsv/chembl_compound-pdb_ccd.tsv has no timestamp file -# File output/tsv/chembl_compound-pdb_ccd.tsv is created 6.985250980149086 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pdb_ccd.tsv is created 6.99858680404948 days ago (will be updated when >5 days) ## Update config/chembl_compound-pdb_ccd/config.yaml => output/tsv/chembl_compound-pdb_ccd.tsv -< 2024-01-05T18:08:24 chembl_compound-pdb_ccd +< 2024-01-12T18:06:22 chembl_compound-pdb_ccd togoid-config config/chembl_compound-pdb_ccd update # Success: output/tsv/chembl_compound-pdb_ccd.tsv is updated -> 2024-01-05T18:08:25 chembl_compound-pdb_ccd +> 2024-01-12T18:06:23 chembl_compound-pdb_ccd ### Update TSV for chembl_compound-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubchem_compound.tsv is newer than config/chembl_compound-pubchem_compound/config.yaml # File output/tsv/chembl_compound-pubchem_compound.tsv has no timestamp file -# File output/tsv/chembl_compound-pubchem_compound.tsv is created 6.9852095863412496 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubchem_compound.tsv is created 6.998547024329769 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubchem_compound/config.yaml => output/tsv/chembl_compound-pubchem_compound.tsv -< 2024-01-05T18:08:25 chembl_compound-pubchem_compound +< 2024-01-12T18:06:23 chembl_compound-pubchem_compound togoid-config config/chembl_compound-pubchem_compound update # Success: output/tsv/chembl_compound-pubchem_compound.tsv is updated -> 2024-01-05T18:08:28 chembl_compound-pubchem_compound +> 2024-01-12T18:06:27 chembl_compound-pubchem_compound ### Update TSV for chembl_compound-pubchem_substance if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubchem_substance.tsv is newer than config/chembl_compound-pubchem_substance/config.yaml # File output/tsv/chembl_compound-pubchem_substance.tsv has no timestamp file -# File output/tsv/chembl_compound-pubchem_substance.tsv is created 6.985240731376539 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubchem_substance.tsv is created 6.998581309887408 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubchem_substance/config.yaml => output/tsv/chembl_compound-pubchem_substance.tsv -< 2024-01-05T18:08:28 chembl_compound-pubchem_substance +< 2024-01-12T18:06:27 chembl_compound-pubchem_substance togoid-config config/chembl_compound-pubchem_substance update # Success: output/tsv/chembl_compound-pubchem_substance.tsv is updated -> 2024-01-05T18:08:30 chembl_compound-pubchem_substance +> 2024-01-12T18:06:28 chembl_compound-pubchem_substance ### Update TSV for chembl_compound-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubmed.tsv is newer than config/chembl_compound-pubmed/config.yaml # File output/tsv/chembl_compound-pubmed.tsv has no timestamp file -# File output/tsv/chembl_compound-pubmed.tsv is created 6.985223679771076 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubmed.tsv is created 6.998564004536066 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubmed/config.yaml => output/tsv/chembl_compound-pubmed.tsv -< 2024-01-05T18:08:30 chembl_compound-pubmed +< 2024-01-12T18:06:28 chembl_compound-pubmed togoid-config config/chembl_compound-pubmed update # Success: output/tsv/chembl_compound-pubmed.tsv is updated -> 2024-01-05T18:08:32 chembl_compound-pubmed +> 2024-01-12T18:06:31 chembl_compound-pubmed ### Update TSV for chembl_target-ensembl_gene if check_tsv_filesize false or check_config_timestamp true or check_tsv_timestamp true # File output/tsv/chembl_target-ensembl_gene.tsv is older than config/chembl_target-ensembl_gene/config.yaml ## Update config/chembl_target-ensembl_gene/config.yaml => output/tsv/chembl_target-ensembl_gene.tsv -< 2024-01-05T18:08:32 chembl_target-ensembl_gene +< 2024-01-12T18:06:31 chembl_target-ensembl_gene togoid-config config/chembl_target-ensembl_gene update # Error: output/tsv/chembl_target-ensembl_gene.tsv new file size per old 0 / 61845 = 0.0 < 0.5 # Error: Failed to create output/tsv/chembl_target-ensembl_gene.tsv or created file was empty # Failure: output/tsv/chembl_target-ensembl_gene.tsv is not updated -> 2024-01-05T18:08:33 chembl_target-ensembl_gene +> 2024-01-12T18:06:32 chembl_target-ensembl_gene ### Update TSV for chembl_target-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-go.tsv is newer than config/chembl_target-go/config.yaml # File output/tsv/chembl_target-go.tsv has no timestamp file -# File output/tsv/chembl_target-go.tsv is created 6.985251226751297 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-go.tsv is created 6.998594266844907 days ago (will be updated when >5 days) ## Update config/chembl_target-go/config.yaml => output/tsv/chembl_target-go.tsv -< 2024-01-05T18:08:33 chembl_target-go +< 2024-01-12T18:06:32 chembl_target-go togoid-config config/chembl_target-go update # Success: output/tsv/chembl_target-go.tsv is updated -> 2024-01-05T18:08:33 chembl_target-go +> 2024-01-12T18:06:32 chembl_target-go ### Update TSV for chembl_target-interpro if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-interpro.tsv is newer than config/chembl_target-interpro/config.yaml # File output/tsv/chembl_target-interpro.tsv has no timestamp file -# File output/tsv/chembl_target-interpro.tsv is created 6.985251406414606 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-interpro.tsv is created 6.998593691740069 days ago (will be updated when >5 days) ## Update config/chembl_target-interpro/config.yaml => output/tsv/chembl_target-interpro.tsv -< 2024-01-05T18:08:33 chembl_target-interpro +< 2024-01-12T18:06:32 chembl_target-interpro togoid-config config/chembl_target-interpro update # Success: output/tsv/chembl_target-interpro.tsv is updated -> 2024-01-05T18:08:34 chembl_target-interpro +> 2024-01-12T18:06:33 chembl_target-interpro ### Update TSV for chembl_target-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-pdb.tsv is newer than config/chembl_target-pdb/config.yaml # File output/tsv/chembl_target-pdb.tsv has no timestamp file -# File output/tsv/chembl_target-pdb.tsv is created 6.985251992402557 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-pdb.tsv is created 6.998592651207326 days ago (will be updated when >5 days) ## Update config/chembl_target-pdb/config.yaml => output/tsv/chembl_target-pdb.tsv -< 2024-01-05T18:08:34 chembl_target-pdb +< 2024-01-12T18:06:33 chembl_target-pdb togoid-config config/chembl_target-pdb update # Success: output/tsv/chembl_target-pdb.tsv is updated -> 2024-01-05T18:08:34 chembl_target-pdb +> 2024-01-12T18:06:33 chembl_target-pdb ### Update TSV for chembl_target-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-pfam.tsv is newer than config/chembl_target-pfam/config.yaml # File output/tsv/chembl_target-pfam.tsv has no timestamp file -# File output/tsv/chembl_target-pfam.tsv is created 6.985253574334028 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-pfam.tsv is created 6.998593718928403 days ago (will be updated when >5 days) ## Update config/chembl_target-pfam/config.yaml => output/tsv/chembl_target-pfam.tsv -< 2024-01-05T18:08:34 chembl_target-pfam +< 2024-01-12T18:06:33 chembl_target-pfam togoid-config config/chembl_target-pfam update # Success: output/tsv/chembl_target-pfam.tsv is updated -> 2024-01-05T18:08:35 chembl_target-pfam +> 2024-01-12T18:06:33 chembl_target-pfam ### Update TSV for chembl_target-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-reactome_pathway.tsv is newer than config/chembl_target-reactome_pathway/config.yaml # File output/tsv/chembl_target-reactome_pathway.tsv has no timestamp file -# File output/tsv/chembl_target-reactome_pathway.tsv is created 6.9852532842292945 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-reactome_pathway.tsv is created 6.998593111272546 days ago (will be updated when >5 days) ## Update config/chembl_target-reactome_pathway/config.yaml => output/tsv/chembl_target-reactome_pathway.tsv -< 2024-01-05T18:08:35 chembl_target-reactome_pathway +< 2024-01-12T18:06:34 chembl_target-reactome_pathway togoid-config config/chembl_target-reactome_pathway update # Success: output/tsv/chembl_target-reactome_pathway.tsv is updated -> 2024-01-05T18:08:35 chembl_target-reactome_pathway +> 2024-01-12T18:06:34 chembl_target-reactome_pathway ### Update TSV for chembl_target-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-uniprot.tsv is newer than config/chembl_target-uniprot/config.yaml # File output/tsv/chembl_target-uniprot.tsv has no timestamp file -# File output/tsv/chembl_target-uniprot.tsv is created 6.985143490543704 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-uniprot.tsv is created 6.998501319497894 days ago (will be updated when >5 days) ## Update config/chembl_target-uniprot/config.yaml => output/tsv/chembl_target-uniprot.tsv -< 2024-01-05T18:08:35 chembl_target-uniprot +< 2024-01-12T18:06:34 chembl_target-uniprot togoid-config config/chembl_target-uniprot update # Success: output/tsv/chembl_target-uniprot.tsv is updated -> 2024-01-05T18:08:43 chembl_target-uniprot +> 2024-01-12T18:06:42 chembl_target-uniprot ### Update TSV for clinvar-medgen if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-medgen.tsv is newer than config/clinvar-medgen/config.yaml # File output/tsv/clinvar-medgen.tsv has no timestamp file -# File output/tsv/clinvar-medgen.tsv is created 6.985224617008738 days ago (will be updated when >5 days) +# File output/tsv/clinvar-medgen.tsv is created 6.998585755777674 days ago (will be updated when >5 days) ## Update config/clinvar-medgen/config.yaml => output/tsv/clinvar-medgen.tsv -< 2024-01-05T18:08:43 clinvar-medgen +< 2024-01-12T18:06:42 clinvar-medgen togoid-config config/clinvar-medgen update # Success: output/tsv/clinvar-medgen.tsv is updated -> 2024-01-05T18:08:45 clinvar-medgen +> 2024-01-12T18:06:44 clinvar-medgen ### Update TSV for cog-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/cog-insdc.tsv is newer than config/cog-insdc/config.yaml # File output/tsv/cog-insdc.tsv is newer than input/cog/download.lock @@ -499,300 +497,500 @@ togoid-config config/clinvar-medgen update ### Update TSV for doid-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-mesh.tsv is newer than config/doid-mesh/config.yaml # File output/tsv/doid-mesh.tsv has no timestamp file -# File output/tsv/doid-mesh.tsv is created 6.985232773467916 days ago (will be updated when >5 days) +# File output/tsv/doid-mesh.tsv is created 6.998602141684445 days ago (will be updated when >5 days) ## Update config/doid-mesh/config.yaml => output/tsv/doid-mesh.tsv -< 2024-01-05T18:08:45 doid-mesh +< 2024-01-12T18:06:44 doid-mesh togoid-config config/doid-mesh update # Success: output/tsv/doid-mesh.tsv is updated -> 2024-01-05T18:08:45 doid-mesh +> 2024-01-12T18:06:45 doid-mesh ### Update TSV for doid-ncit_disease if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-ncit_disease.tsv is newer than config/doid-ncit_disease/config.yaml # File output/tsv/doid-ncit_disease.tsv has no timestamp file -# File output/tsv/doid-ncit_disease.tsv is created 6.985232568768576 days ago (will be updated when >5 days) +# File output/tsv/doid-ncit_disease.tsv is created 6.998602092720348 days ago (will be updated when >5 days) ## Update config/doid-ncit_disease/config.yaml => output/tsv/doid-ncit_disease.tsv -< 2024-01-05T18:08:45 doid-ncit_disease +< 2024-01-12T18:06:45 doid-ncit_disease togoid-config config/doid-ncit_disease update # Success: output/tsv/doid-ncit_disease.tsv is updated -> 2024-01-05T18:08:45 doid-ncit_disease +> 2024-01-12T18:06:45 doid-ncit_disease ### Update TSV for doid-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-omim_phenotype.tsv is newer than config/doid-omim_phenotype/config.yaml # File output/tsv/doid-omim_phenotype.tsv has no timestamp file -# File output/tsv/doid-omim_phenotype.tsv is created 6.985232824042245 days ago (will be updated when >5 days) +# File output/tsv/doid-omim_phenotype.tsv is created 6.998602223777222 days ago (will be updated when >5 days) ## Update config/doid-omim_phenotype/config.yaml => output/tsv/doid-omim_phenotype.tsv -< 2024-01-05T18:08:45 doid-omim_phenotype +< 2024-01-12T18:06:45 doid-omim_phenotype togoid-config config/doid-omim_phenotype update # Success: output/tsv/doid-omim_phenotype.tsv is updated -> 2024-01-05T18:08:46 doid-omim_phenotype +> 2024-01-12T18:06:45 doid-omim_phenotype ### Update TSV for ensembl_gene-affy_probeset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-affy_probeset.tsv is newer than config/ensembl_gene-affy_probeset/config.yaml # File output/tsv/ensembl_gene-affy_probeset.tsv has no timestamp file -# File output/tsv/ensembl_gene-affy_probeset.tsv is created 6.9847104707393175 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-affy_probeset.tsv is created 6.997682653078195 days ago (will be updated when >5 days) ## Update config/ensembl_gene-affy_probeset/config.yaml => output/tsv/ensembl_gene-affy_probeset.tsv -< 2024-01-05T18:08:46 ensembl_gene-affy_probeset +< 2024-01-12T18:06:45 ensembl_gene-affy_probeset togoid-config config/ensembl_gene-affy_probeset update # Success: output/tsv/ensembl_gene-affy_probeset.tsv is updated -> 2024-01-05T18:10:06 ensembl_gene-affy_probeset +> 2024-01-12T18:07:20 ensembl_gene-affy_probeset ### Update TSV for ensembl_gene-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ensembl_protein.tsv is newer than config/ensembl_gene-ensembl_protein/config.yaml # File output/tsv/ensembl_gene-ensembl_protein.tsv has no timestamp file -# File output/tsv/ensembl_gene-ensembl_protein.tsv is created 6.984341709819873 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ensembl_protein.tsv is created 6.996794830502245 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ensembl_protein/config.yaml => output/tsv/ensembl_gene-ensembl_protein.tsv -< 2024-01-05T18:10:06 ensembl_gene-ensembl_protein +< 2024-01-12T18:07:20 ensembl_gene-ensembl_protein togoid-config config/ensembl_gene-ensembl_protein update # Success: output/tsv/ensembl_gene-ensembl_protein.tsv is updated -> 2024-01-05T18:11:57 ensembl_gene-ensembl_protein +> 2024-01-12T18:19:10 ensembl_gene-ensembl_protein ### Update TSV for ensembl_gene-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ensembl_transcript.tsv is newer than config/ensembl_gene-ensembl_transcript/config.yaml # File output/tsv/ensembl_gene-ensembl_transcript.tsv has no timestamp file -# File output/tsv/ensembl_gene-ensembl_transcript.tsv is created 6.984211528971655 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ensembl_transcript.tsv is created 7.003613740013356 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ensembl_transcript/config.yaml => output/tsv/ensembl_gene-ensembl_transcript.tsv -< 2024-01-05T18:11:57 ensembl_gene-ensembl_transcript +< 2024-01-12T18:19:10 ensembl_gene-ensembl_transcript togoid-config config/ensembl_gene-ensembl_transcript update # Success: output/tsv/ensembl_gene-ensembl_transcript.tsv is updated -> 2024-01-05T18:13:58 ensembl_gene-ensembl_transcript +> 2024-01-12T18:21:04 ensembl_gene-ensembl_transcript ### Update TSV for ensembl_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-hgnc.tsv is newer than config/ensembl_gene-hgnc/config.yaml # File output/tsv/ensembl_gene-hgnc.tsv has no timestamp file -# File output/tsv/ensembl_gene-hgnc.tsv is created 6.9856005440181255 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-hgnc.tsv is created 7.004935123764815 days ago (will be updated when >5 days) ## Update config/ensembl_gene-hgnc/config.yaml => output/tsv/ensembl_gene-hgnc.tsv -< 2024-01-05T18:13:58 ensembl_gene-hgnc +< 2024-01-12T18:21:04 ensembl_gene-hgnc togoid-config config/ensembl_gene-hgnc update # Success: output/tsv/ensembl_gene-hgnc.tsv is updated -> 2024-01-05T18:13:58 ensembl_gene-hgnc +> 2024-01-12T18:21:05 ensembl_gene-hgnc ### Update TSV for ensembl_gene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ncbigene.tsv is newer than config/ensembl_gene-ncbigene/config.yaml # File output/tsv/ensembl_gene-ncbigene.tsv has no timestamp file -# File output/tsv/ensembl_gene-ncbigene.tsv is created 6.984577316198993 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ncbigene.tsv is created 7.003988508533067 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ncbigene/config.yaml => output/tsv/ensembl_gene-ncbigene.tsv -< 2024-01-05T18:13:58 ensembl_gene-ncbigene +< 2024-01-12T18:21:05 ensembl_gene-ncbigene togoid-config config/ensembl_gene-ncbigene update +Error: Failed to retrieve taxon:61819 in loop_count:1 +Error: Failed to retrieve taxon:132585 in loop_count:1 +Error: Failed to retrieve taxon:8845 in loop_count:1 +Error: Failed to retrieve taxon:241587 in loop_count:1 +Error: Failed to retrieve taxon:8823 in loop_count:1 +Error: Failed to retrieve taxon:211598 in loop_count:1 +Error: Failed to retrieve taxon:8824 in loop_count:1 +Error: Failed to retrieve taxon:161767 in loop_count:1 +Error: Failed to retrieve taxon:8840 in loop_count:1 +Error: Failed to retrieve taxon:75864 in loop_count:1 +Error: Failed to retrieve taxon:30521 in loop_count:1 +Error: Failed to retrieve taxon:9771 in loop_count:1 +Error: Failed to retrieve taxon:224669 in loop_count:1 +Error: Failed to retrieve taxon:30461 in loop_count:1 +Error: Failed to retrieve taxon:106734 in loop_count:1 +Error: Failed to retrieve taxon:37548 in loop_count:1 +Error: Failed to retrieve taxon:84702 in loop_count:1 +Error: Failed to retrieve taxon:9358 in loop_count:1 +Error: Failed to retrieve taxon:1240228 in loop_count:1 +Error: Failed to retrieve taxon:8103 in loop_count:1 +Error: Failed to retrieve taxon:425635 in loop_count:1 +Error: Failed to retrieve taxon:9089 in loop_count:1 +Error: Failed to retrieve taxon:181631 in loop_count:1 +Error: Failed to retrieve taxon:91951 in loop_count:1 +Error: Failed to retrieve taxon:51154 in loop_count:1 +Error: Failed to retrieve taxon:8475 in loop_count:1 +Error: Failed to retrieve taxon:13489 in loop_count:1 +Error: Failed to retrieve taxon:83772 in loop_count:1 +Error: Failed to retrieve taxon:7764 in loop_count:1 +Error: Failed to retrieve taxon:44316 in loop_count:1 +Error: Failed to retrieve taxon:100819 in loop_count:1 +Error: Failed to retrieve taxon:33528 in loop_count:1 +Error: Failed to retrieve taxon:38772 in loop_count:1 +Error: Failed to retrieve taxon:62062 in loop_count:1 +Error: Failed to retrieve taxon:40217 in loop_count:1 +Error: Failed to retrieve taxon:445787 in loop_count:1 +Error: Failed to retrieve taxon:8630 in loop_count:1 +Error: Failed to retrieve taxon:2593467 in loop_count:1 +Error: Failed to retrieve taxon:9315 in loop_count:1 +Error: Failed to retrieve taxon:94237 in loop_count:1 +Error: Failed to retrieve taxon:68415 in loop_count:1 +Error: Failed to retrieve taxon:10103 in loop_count:1 +Error: Failed to retrieve taxon:47308 in loop_count:1 +Error: Failed to retrieve taxon:35670 in loop_count:1 +Error: Failed to retrieve taxon:47969 in loop_count:1 +Error: Failed to retrieve taxon:123683 in loop_count:1 +Error: Failed to retrieve taxon:183150 in loop_count:1 +Error: Failed to retrieve taxon:257818 in loop_count:1 +Error: Failed to retrieve taxon:367368 in loop_count:1 +Error: Failed to retrieve taxon:9054 in loop_count:1 +Error: Failed to retrieve taxon:9689 in loop_count:1 +Error: Failed to retrieve taxon:409849 in loop_count:1 +Error: Failed to retrieve taxon:1328070 in loop_count:1 +Error: Failed to retrieve taxon:9049 in loop_count:1 +Error: Failed to retrieve taxon:59479 in loop_count:1 +Error: Failed to retrieve taxon:99837 in loop_count:1 +Error: Failed to retrieve taxon:96440 in loop_count:1 +Error: Failed to retrieve taxon:52904 in loop_count:1 +Error: Failed to retrieve taxon:311401 in loop_count:1 +Error: Failed to retrieve taxon:8508 in loop_count:1 +Error: Failed to retrieve taxon:37032 in loop_count:1 +Error: Failed to retrieve taxon:55149 in loop_count:1 +Error: Failed to retrieve taxon:9643 in loop_count:1 +Error: Failed to retrieve taxon:441215 in loop_count:1 +Error: Failed to retrieve taxon:61221 in loop_count:1 +Error: Failed to retrieve taxon:1220523 in loop_count:1 +Error: Failed to retrieve taxon:10096 in loop_count:1 # Success: output/tsv/ensembl_gene-ncbigene.tsv is updated -> 2024-01-05T18:15:20 ensembl_gene-ncbigene +> 2024-01-12T18:28:25 ensembl_gene-ncbigene ### Update TSV for ensembl_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-uniprot.tsv is newer than config/ensembl_gene-uniprot/config.yaml # File output/tsv/ensembl_gene-uniprot.tsv has no timestamp file -# File output/tsv/ensembl_gene-uniprot.tsv is created 6.984579954484352 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-uniprot.tsv is created 7.00810284018389 days ago (will be updated when >5 days) ## Update config/ensembl_gene-uniprot/config.yaml => output/tsv/ensembl_gene-uniprot.tsv -< 2024-01-05T18:15:20 ensembl_gene-uniprot +< 2024-01-12T18:28:25 ensembl_gene-uniprot togoid-config config/ensembl_gene-uniprot update +Error: Failed to retrieve taxon:223781 in loop_count:1 +Error: Failed to retrieve taxon:241587 in loop_count:1 +Error: Failed to retrieve taxon:194338 in loop_count:1 +Error: Failed to retrieve taxon:8823 in loop_count:1 +Error: Failed to retrieve taxon:8824 in loop_count:1 +Error: Failed to retrieve taxon:308060 in loop_count:1 +Error: Failed to retrieve taxon:9771 in loop_count:1 +Error: Failed to retrieve taxon:224669 in loop_count:1 +Error: Failed to retrieve taxon:158456 in loop_count:1 +Error: Failed to retrieve taxon:30461 in loop_count:1 +Error: Failed to retrieve taxon:286419 in loop_count:1 +Error: Failed to retrieve taxon:106734 in loop_count:1 +Error: Failed to retrieve taxon:156563 in loop_count:1 +Error: Failed to retrieve taxon:84702 in loop_count:1 +Error: Failed to retrieve taxon:1240228 in loop_count:1 +Error: Failed to retrieve taxon:1196302 in loop_count:1 +Error: Failed to retrieve taxon:425635 in loop_count:1 +Error: Failed to retrieve taxon:9089 in loop_count:1 +Error: Failed to retrieve taxon:87175 in loop_count:1 +Error: Failed to retrieve taxon:198806 in loop_count:1 +Error: Failed to retrieve taxon:181631 in loop_count:1 +Error: Failed to retrieve taxon:91951 in loop_count:1 +Error: Failed to retrieve taxon:51154 in loop_count:1 +Error: Failed to retrieve taxon:299321 in loop_count:1 +Error: Failed to retrieve taxon:83772 in loop_count:1 +Error: Failed to retrieve taxon:27687 in loop_count:1 +Error: Failed to retrieve taxon:173247 in loop_count:1 +Error: Failed to retrieve taxon:100819 in loop_count:1 +Error: Failed to retrieve taxon:1825980 in loop_count:1 +Error: Failed to retrieve taxon:441366 in loop_count:1 +Error: Failed to retrieve taxon:40217 in loop_count:1 +Error: Failed to retrieve taxon:445787 in loop_count:1 +Error: Failed to retrieve taxon:8630 in loop_count:1 +Error: Failed to retrieve taxon:321398 in loop_count:1 +Error: Failed to retrieve taxon:2593467 in loop_count:1 +Error: Failed to retrieve taxon:9994 in loop_count:1 +Error: Failed to retrieve taxon:586833 in loop_count:1 +Error: Failed to retrieve taxon:47308 in loop_count:1 +Error: Failed to retrieve taxon:35670 in loop_count:1 +Error: Failed to retrieve taxon:30464 in loop_count:1 +Error: Failed to retrieve taxon:257818 in loop_count:1 +Error: Failed to retrieve taxon:64176 in loop_count:1 +Error: Failed to retrieve taxon:210632 in loop_count:1 +Error: Failed to retrieve taxon:42100 in loop_count:1 +Error: Failed to retrieve taxon:1328070 in loop_count:1 +Error: Failed to retrieve taxon:591936 in loop_count:1 +Error: Failed to retrieve taxon:103695 in loop_count:1 +Error: Failed to retrieve taxon:181472 in loop_count:1 +Error: Failed to retrieve taxon:99837 in loop_count:1 +Error: Failed to retrieve taxon:2489341 in loop_count:1 +Error: Failed to retrieve taxon:96440 in loop_count:1 +Error: Failed to retrieve taxon:311401 in loop_count:1 +Error: Failed to retrieve taxon:375764 in loop_count:1 +Error: Failed to retrieve taxon:8508 in loop_count:1 +Error: Failed to retrieve taxon:37032 in loop_count:1 +Error: Failed to retrieve taxon:55149 in loop_count:1 +Error: Failed to retrieve taxon:2587831 in loop_count:1 +Error: Failed to retrieve taxon:9999 in loop_count:1 +Error: Failed to retrieve taxon:441215 in loop_count:1 +Error: Failed to retrieve taxon:1220523 in loop_count:1 # Success: output/tsv/ensembl_gene-uniprot.tsv is updated -> 2024-01-05T18:16:45 ensembl_gene-uniprot +> 2024-01-12T18:40:52 ensembl_gene-uniprot ### Update TSV for ensembl_protein-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_protein-ensembl_transcript.tsv is newer than config/ensembl_protein-ensembl_transcript/config.yaml # File output/tsv/ensembl_protein-ensembl_transcript.tsv has no timestamp file -# File output/tsv/ensembl_protein-ensembl_transcript.tsv is created 6.984260298046597 days ago (will be updated when >5 days) +# File output/tsv/ensembl_protein-ensembl_transcript.tsv is created 7.015478900279179 days ago (will be updated when >5 days) ## Update config/ensembl_protein-ensembl_transcript/config.yaml => output/tsv/ensembl_protein-ensembl_transcript.tsv -< 2024-01-05T18:16:45 ensembl_protein-ensembl_transcript +< 2024-01-12T18:40:52 ensembl_protein-ensembl_transcript togoid-config config/ensembl_protein-ensembl_transcript update # Success: output/tsv/ensembl_protein-ensembl_transcript.tsv is updated -> 2024-01-05T18:18:34 ensembl_protein-ensembl_transcript +> 2024-01-12T18:52:40 ensembl_protein-ensembl_transcript ### Update TSV for ensembl_transcript-affy_probeset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-affy_probeset.tsv is newer than config/ensembl_transcript-affy_probeset/config.yaml # File output/tsv/ensembl_transcript-affy_probeset.tsv has no timestamp file -# File output/tsv/ensembl_transcript-affy_probeset.tsv is created 6.984934687199745 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-affy_probeset.tsv is created 7.022912903498276 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-affy_probeset/config.yaml => output/tsv/ensembl_transcript-affy_probeset.tsv -< 2024-01-05T18:18:34 ensembl_transcript-affy_probeset +< 2024-01-12T18:52:40 ensembl_transcript-affy_probeset togoid-config config/ensembl_transcript-affy_probeset update # Success: output/tsv/ensembl_transcript-affy_probeset.tsv is updated -> 2024-01-05T18:19:41 ensembl_transcript-affy_probeset +> 2024-01-12T18:53:16 ensembl_transcript-affy_probeset ### Update TSV for ensembl_transcript-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-go.tsv is newer than config/ensembl_transcript-go/config.yaml # File output/tsv/ensembl_transcript-go.tsv has no timestamp file -# File output/tsv/ensembl_transcript-go.tsv is created 6.98287137027139 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-go.tsv is created 7.020726331811412 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-go/config.yaml => output/tsv/ensembl_transcript-go.tsv -< 2024-01-05T18:19:41 ensembl_transcript-go +< 2024-01-12T18:53:16 ensembl_transcript-go togoid-config config/ensembl_transcript-go update # Success: output/tsv/ensembl_transcript-go.tsv is updated -> 2024-01-05T18:23:25 ensembl_transcript-go +> 2024-01-13T02:27:47 ensembl_transcript-go ### Update TSV for ensembl_transcript-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-hgnc.tsv is newer than config/ensembl_transcript-hgnc/config.yaml # File output/tsv/ensembl_transcript-hgnc.tsv has no timestamp file -# File output/tsv/ensembl_transcript-hgnc.tsv is created 6.985462405149537 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-hgnc.tsv is created 7.33635669377934 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-hgnc/config.yaml => output/tsv/ensembl_transcript-hgnc.tsv -< 2024-01-05T18:23:25 ensembl_transcript-hgnc +< 2024-01-13T02:27:47 ensembl_transcript-hgnc togoid-config config/ensembl_transcript-hgnc update # Success: output/tsv/ensembl_transcript-hgnc.tsv is updated -> 2024-01-05T18:23:26 ensembl_transcript-hgnc +> 2024-01-13T02:27:48 ensembl_transcript-hgnc ### Update TSV for ensembl_transcript-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-refseq_rna.tsv is newer than config/ensembl_transcript-refseq_rna/config.yaml # File output/tsv/ensembl_transcript-refseq_rna.tsv has no timestamp file -# File output/tsv/ensembl_transcript-refseq_rna.tsv is created 6.9843829782357405 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-refseq_rna.tsv is created 7.335044024406482 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-refseq_rna/config.yaml => output/tsv/ensembl_transcript-refseq_rna.tsv -< 2024-01-05T18:23:26 ensembl_transcript-refseq_rna +< 2024-01-13T02:27:48 ensembl_transcript-refseq_rna togoid-config config/ensembl_transcript-refseq_rna update +Error: Failed to retrieve taxon:61819 in loop_count:1 +Error: Failed to retrieve taxon:132585 in loop_count:1 +Error: Failed to retrieve taxon:8845 in loop_count:1 +Error: Failed to retrieve taxon:241587 in loop_count:1 +Error: Failed to retrieve taxon:8823 in loop_count:1 +Error: Failed to retrieve taxon:211598 in loop_count:1 +Error: Failed to retrieve taxon:8824 in loop_count:1 +Error: Failed to retrieve taxon:161767 in loop_count:1 +Error: Failed to retrieve taxon:8840 in loop_count:1 +Error: Failed to retrieve taxon:75864 in loop_count:1 +Error: Failed to retrieve taxon:30521 in loop_count:1 +Error: Failed to retrieve taxon:9771 in loop_count:1 +Error: Failed to retrieve taxon:224669 in loop_count:1 +Error: Failed to retrieve taxon:30461 in loop_count:1 +Error: Failed to retrieve taxon:106734 in loop_count:1 +Error: Failed to retrieve taxon:37548 in loop_count:1 +Error: Failed to retrieve taxon:84702 in loop_count:1 +Error: Failed to retrieve taxon:9358 in loop_count:1 +Error: Failed to retrieve taxon:1240228 in loop_count:1 +Error: Failed to retrieve taxon:8103 in loop_count:1 +Error: Failed to retrieve taxon:425635 in loop_count:1 +Error: Failed to retrieve taxon:9089 in loop_count:1 +Error: Failed to retrieve taxon:51511 in loop_count:1 +Error: Failed to retrieve taxon:181631 in loop_count:1 +Error: Failed to retrieve taxon:91951 in loop_count:1 +Error: Failed to retrieve taxon:51154 in loop_count:1 +Error: Failed to retrieve taxon:8475 in loop_count:1 +Error: Failed to retrieve taxon:13489 in loop_count:1 +Error: Failed to retrieve taxon:83772 in loop_count:1 +Error: Failed to retrieve taxon:7764 in loop_count:1 +Error: Failed to retrieve taxon:44316 in loop_count:1 +Error: Failed to retrieve taxon:100819 in loop_count:1 +Error: Failed to retrieve taxon:33528 in loop_count:1 +Error: Failed to retrieve taxon:38772 in loop_count:1 +Error: Failed to retrieve taxon:62062 in loop_count:1 +Error: Failed to retrieve taxon:40217 in loop_count:1 +Error: Failed to retrieve taxon:445787 in loop_count:1 +Error: Failed to retrieve taxon:8630 in loop_count:1 +Error: Failed to retrieve taxon:2593467 in loop_count:1 +Error: Failed to retrieve taxon:9315 in loop_count:1 +Error: Failed to retrieve taxon:94237 in loop_count:1 +Error: Failed to retrieve taxon:68415 in loop_count:1 +Error: Failed to retrieve taxon:10103 in loop_count:1 +Error: Failed to retrieve taxon:47308 in loop_count:1 +Error: Failed to retrieve taxon:35670 in loop_count:1 +Error: Failed to retrieve taxon:452646 in loop_count:1 +Error: Failed to retrieve taxon:47969 in loop_count:1 +Error: Failed to retrieve taxon:123683 in loop_count:1 +Error: Failed to retrieve taxon:183150 in loop_count:1 +Error: Failed to retrieve taxon:257818 in loop_count:1 +Error: Failed to retrieve taxon:367368 in loop_count:1 +Error: Failed to retrieve taxon:9813 in loop_count:1 +Error: Failed to retrieve taxon:9054 in loop_count:1 +Error: Failed to retrieve taxon:9689 in loop_count:1 +Error: Failed to retrieve taxon:7757 in loop_count:1 +Error: Failed to retrieve taxon:409849 in loop_count:1 +Error: Failed to retrieve taxon:1328070 in loop_count:1 +Error: Failed to retrieve taxon:9049 in loop_count:1 +Error: Failed to retrieve taxon:59479 in loop_count:1 +Error: Failed to retrieve taxon:99837 in loop_count:1 +Error: Failed to retrieve taxon:96440 in loop_count:1 +Error: Failed to retrieve taxon:52904 in loop_count:1 +Error: Failed to retrieve taxon:311401 in loop_count:1 +Error: Failed to retrieve taxon:8508 in loop_count:1 +Error: Failed to retrieve taxon:37347 in loop_count:1 +Error: Failed to retrieve taxon:55149 in loop_count:1 +Error: Failed to retrieve taxon:99883 in loop_count:1 +Error: Failed to retrieve taxon:9643 in loop_count:1 +Error: Failed to retrieve taxon:441215 in loop_count:1 +Error: Failed to retrieve taxon:61221 in loop_count:1 +Error: Failed to retrieve taxon:1220523 in loop_count:1 +Error: Failed to retrieve taxon:10096 in loop_count:1 +Error: Failed to retrieve taxon:6239 in loop_count:1 # Success: output/tsv/ensembl_transcript-refseq_rna.tsv is updated -> 2024-01-05T18:25:21 ensembl_transcript-refseq_rna +> 2024-01-13T02:45:45 ensembl_transcript-refseq_rna ### Update TSV for gea-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/gea-bioproject.tsv is newer than config/gea-bioproject/config.yaml # File output/tsv/gea-bioproject.tsv has no timestamp file -# File output/tsv/gea-bioproject.tsv is created 6.985704900913449 days ago (will be updated when >5 days) +# File output/tsv/gea-bioproject.tsv is created 7.347501297379422 days ago (will be updated when >5 days) ## Update config/gea-bioproject/config.yaml => output/tsv/gea-bioproject.tsv -< 2024-01-05T18:25:21 gea-bioproject +< 2024-01-13T02:45:45 gea-bioproject togoid-config config/gea-bioproject update # Success: output/tsv/gea-bioproject.tsv is updated -> 2024-01-05T18:25:21 gea-bioproject +> 2024-01-13T02:45:46 gea-bioproject ### Update TSV for gea-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/gea-biosample.tsv is newer than config/gea-biosample/config.yaml # File output/tsv/gea-biosample.tsv has no timestamp file -# File output/tsv/gea-biosample.tsv is created 6.985704673342928 days ago (will be updated when >5 days) +# File output/tsv/gea-biosample.tsv is created 7.347502436369247 days ago (will be updated when >5 days) ## Update config/gea-biosample/config.yaml => output/tsv/gea-biosample.tsv -< 2024-01-05T18:25:21 gea-biosample +< 2024-01-13T02:45:46 gea-biosample togoid-config config/gea-biosample update # Success: output/tsv/gea-biosample.tsv is updated -> 2024-01-05T18:25:21 gea-biosample +> 2024-01-13T02:45:46 gea-biosample ### Update TSV for glytoucan-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-doid.tsv is newer than config/glytoucan-doid/config.yaml # File output/tsv/glytoucan-doid.tsv has no timestamp file -# File output/tsv/glytoucan-doid.tsv is created 6.985583042945451 days ago (will be updated when >5 days) +# File output/tsv/glytoucan-doid.tsv is created 7.347379864179641 days ago (will be updated when >5 days) ## Update config/glytoucan-doid/config.yaml => output/tsv/glytoucan-doid.tsv -< 2024-01-05T18:25:21 glytoucan-doid +< 2024-01-13T02:45:46 glytoucan-doid togoid-config config/glytoucan-doid update # Success: output/tsv/glytoucan-doid.tsv is updated -> 2024-01-05T18:25:32 glytoucan-doid +> 2024-01-13T02:45:57 glytoucan-doid ### Update TSV for glytoucan-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-ncbigene.tsv is newer than config/glytoucan-ncbigene/config.yaml # File output/tsv/glytoucan-ncbigene.tsv has no timestamp file -# File output/tsv/glytoucan-ncbigene.tsv is created 6.985701745963668 days ago (will be updated when >5 days) +# File output/tsv/glytoucan-ncbigene.tsv is created 7.3474994015166315 days ago (will be updated when >5 days) ## Update config/glytoucan-ncbigene/config.yaml => output/tsv/glytoucan-ncbigene.tsv -< 2024-01-05T18:25:33 glytoucan-ncbigene +< 2024-01-13T02:45:57 glytoucan-ncbigene togoid-config config/glytoucan-ncbigene update # Success: output/tsv/glytoucan-ncbigene.tsv is updated -> 2024-01-05T18:25:33 glytoucan-ncbigene +> 2024-01-13T02:45:58 glytoucan-ncbigene ### Update TSV for glytoucan-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-uniprot.tsv is newer than config/glytoucan-uniprot/config.yaml # File output/tsv/glytoucan-uniprot.tsv has no timestamp file -# File output/tsv/glytoucan-uniprot.tsv is created 6.98569629377522 days ago (will be updated when >5 days) +# File output/tsv/glytoucan-uniprot.tsv is created 7.34749358571368 days ago (will be updated when >5 days) ## Update config/glytoucan-uniprot/config.yaml => output/tsv/glytoucan-uniprot.tsv -< 2024-01-05T18:25:33 glytoucan-uniprot +< 2024-01-13T02:45:58 glytoucan-uniprot togoid-config config/glytoucan-uniprot update # Success: output/tsv/glytoucan-uniprot.tsv is updated -> 2024-01-05T18:25:35 glytoucan-uniprot +> 2024-01-13T02:45:59 glytoucan-uniprot ### Update TSV for hgnc-ccds if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ccds.tsv is newer than config/hgnc-ccds/config.yaml # File output/tsv/hgnc-ccds.tsv has no timestamp file -# File output/tsv/hgnc-ccds.tsv is created 6.9857058585018175 days ago (will be updated when >5 days) +# File output/tsv/hgnc-ccds.tsv is created 7.347503479969525 days ago (will be updated when >5 days) ## Update config/hgnc-ccds/config.yaml => output/tsv/hgnc-ccds.tsv -< 2024-01-05T18:25:35 hgnc-ccds +< 2024-01-13T02:45:59 hgnc-ccds togoid-config config/hgnc-ccds update # Success: output/tsv/hgnc-ccds.tsv is updated -> 2024-01-05T18:25:35 hgnc-ccds +> 2024-01-13T02:46:00 hgnc-ccds ### Update TSV for hgnc-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ec.tsv is newer than config/hgnc-ec/config.yaml # File output/tsv/hgnc-ec.tsv has no timestamp file -# File output/tsv/hgnc-ec.tsv is created 6.985706391193323 days ago (will be updated when >5 days) +# File output/tsv/hgnc-ec.tsv is created 7.347492757073982 days ago (will be updated when >5 days) ## Update config/hgnc-ec/config.yaml => output/tsv/hgnc-ec.tsv -< 2024-01-05T18:25:35 hgnc-ec +< 2024-01-13T02:46:00 hgnc-ec togoid-config config/hgnc-ec update # Success: output/tsv/hgnc-ec.tsv is updated -> 2024-01-05T18:25:37 hgnc-ec +> 2024-01-13T02:46:00 hgnc-ec ### Update TSV for hgnc-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ensembl_gene.tsv is newer than config/hgnc-ensembl_gene/config.yaml # File output/tsv/hgnc-ensembl_gene.tsv has no timestamp file -# File output/tsv/hgnc-ensembl_gene.tsv is created 6.985716464515497 days ago (will be updated when >5 days) +# File output/tsv/hgnc-ensembl_gene.tsv is created 7.347490463059491 days ago (will be updated when >5 days) ## Update config/hgnc-ensembl_gene/config.yaml => output/tsv/hgnc-ensembl_gene.tsv -< 2024-01-05T18:25:37 hgnc-ensembl_gene +< 2024-01-13T02:46:00 hgnc-ensembl_gene togoid-config config/hgnc-ensembl_gene update # Success: output/tsv/hgnc-ensembl_gene.tsv is updated -> 2024-01-05T18:25:37 hgnc-ensembl_gene +> 2024-01-13T02:46:01 hgnc-ensembl_gene ### Update TSV for hgnc-hgnc_symbol if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-hgnc_symbol.tsv is newer than config/hgnc-hgnc_symbol/config.yaml # File output/tsv/hgnc-hgnc_symbol.tsv has no timestamp file -# File output/tsv/hgnc-hgnc_symbol.tsv is created 6.985717824915161 days ago (will be updated when >5 days) +# File output/tsv/hgnc-hgnc_symbol.tsv is created 7.34749064257838 days ago (will be updated when >5 days) ## Update config/hgnc-hgnc_symbol/config.yaml => output/tsv/hgnc-hgnc_symbol.tsv -< 2024-01-05T18:25:37 hgnc-hgnc_symbol +< 2024-01-13T02:46:01 hgnc-hgnc_symbol togoid-config config/hgnc-hgnc_symbol update # Success: output/tsv/hgnc-hgnc_symbol.tsv is updated -> 2024-01-05T18:25:38 hgnc-hgnc_symbol +> 2024-01-13T02:46:01 hgnc-hgnc_symbol ### Update TSV for hgnc-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-insdc.tsv is newer than config/hgnc-insdc/config.yaml # File output/tsv/hgnc-insdc.tsv has no timestamp file -# File output/tsv/hgnc-insdc.tsv is created 6.985718019863206 days ago (will be updated when >5 days) +# File output/tsv/hgnc-insdc.tsv is created 7.347490577119606 days ago (will be updated when >5 days) ## Update config/hgnc-insdc/config.yaml => output/tsv/hgnc-insdc.tsv -< 2024-01-05T18:25:38 hgnc-insdc +< 2024-01-13T02:46:01 hgnc-insdc togoid-config config/hgnc-insdc update # Success: output/tsv/hgnc-insdc.tsv is updated -> 2024-01-05T18:25:38 hgnc-insdc +> 2024-01-13T02:46:02 hgnc-insdc ### Update TSV for hgnc-lrg if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-lrg.tsv is newer than config/hgnc-lrg/config.yaml # File output/tsv/hgnc-lrg.tsv has no timestamp file -# File output/tsv/hgnc-lrg.tsv is created 6.985718867066389 days ago (will be updated when >5 days) +# File output/tsv/hgnc-lrg.tsv is created 7.347479041635255 days ago (will be updated when >5 days) ## Update config/hgnc-lrg/config.yaml => output/tsv/hgnc-lrg.tsv -< 2024-01-05T18:25:38 hgnc-lrg +< 2024-01-13T02:46:02 hgnc-lrg togoid-config config/hgnc-lrg update # Success: output/tsv/hgnc-lrg.tsv is updated -> 2024-01-05T18:25:39 hgnc-lrg +> 2024-01-13T02:46:02 hgnc-lrg ### Update TSV for hgnc-mgi_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-mgi_gene.tsv is newer than config/hgnc-mgi_gene/config.yaml # File output/tsv/hgnc-mgi_gene.tsv has no timestamp file -# File output/tsv/hgnc-mgi_gene.tsv is created 6.9857301763311925 days ago (will be updated when >5 days) +# File output/tsv/hgnc-mgi_gene.tsv is created 7.347478162937894 days ago (will be updated when >5 days) ## Update config/hgnc-mgi_gene/config.yaml => output/tsv/hgnc-mgi_gene.tsv -< 2024-01-05T18:25:39 hgnc-mgi_gene +< 2024-01-13T02:46:02 hgnc-mgi_gene togoid-config config/hgnc-mgi_gene update # Success: output/tsv/hgnc-mgi_gene.tsv is updated -> 2024-01-05T18:25:40 hgnc-mgi_gene +> 2024-01-13T02:46:02 hgnc-mgi_gene ### Update TSV for hgnc-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-mirbase.tsv is newer than config/hgnc-mirbase/config.yaml # File output/tsv/hgnc-mirbase.tsv has no timestamp file -# File output/tsv/hgnc-mirbase.tsv is created 6.985731474476493 days ago (will be updated when >5 days) +# File output/tsv/hgnc-mirbase.tsv is created 7.3474790175077205 days ago (will be updated when >5 days) ## Update config/hgnc-mirbase/config.yaml => output/tsv/hgnc-mirbase.tsv -< 2024-01-05T18:25:40 hgnc-mirbase +< 2024-01-13T02:46:02 hgnc-mirbase togoid-config config/hgnc-mirbase update # Success: output/tsv/hgnc-mirbase.tsv is updated -> 2024-01-05T18:25:40 hgnc-mirbase +> 2024-01-13T02:46:03 hgnc-mirbase ### Update TSV for hgnc-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ncbigene.tsv is newer than config/hgnc-ncbigene/config.yaml # File output/tsv/hgnc-ncbigene.tsv has no timestamp file -# File output/tsv/hgnc-ncbigene.tsv is created 6.985731146645348 days ago (will be updated when >5 days) +# File output/tsv/hgnc-ncbigene.tsv is created 7.347478882252754 days ago (will be updated when >5 days) ## Update config/hgnc-ncbigene/config.yaml => output/tsv/hgnc-ncbigene.tsv -< 2024-01-05T18:25:40 hgnc-ncbigene +< 2024-01-13T02:46:03 hgnc-ncbigene togoid-config config/hgnc-ncbigene update # Success: output/tsv/hgnc-ncbigene.tsv is updated -> 2024-01-05T18:25:41 hgnc-ncbigene +> 2024-01-13T02:46:03 hgnc-ncbigene ### Update TSV for hgnc-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-omim_gene.tsv is newer than config/hgnc-omim_gene/config.yaml # File output/tsv/hgnc-omim_gene.tsv has no timestamp file -# File output/tsv/hgnc-omim_gene.tsv is created 6.985731273799027 days ago (will be updated when >5 days) +# File output/tsv/hgnc-omim_gene.tsv is created 7.347476119477303 days ago (will be updated when >5 days) ## Update config/hgnc-omim_gene/config.yaml => output/tsv/hgnc-omim_gene.tsv -< 2024-01-05T18:25:41 hgnc-omim_gene +< 2024-01-13T02:46:03 hgnc-omim_gene togoid-config config/hgnc-omim_gene update # Success: output/tsv/hgnc-omim_gene.tsv is updated -> 2024-01-05T18:25:41 hgnc-omim_gene +> 2024-01-13T02:46:04 hgnc-omim_gene ### Update TSV for hgnc-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-pubmed.tsv is newer than config/hgnc-pubmed/config.yaml # File output/tsv/hgnc-pubmed.tsv has no timestamp file -# File output/tsv/hgnc-pubmed.tsv is created 6.985734372542153 days ago (will be updated when >5 days) +# File output/tsv/hgnc-pubmed.tsv is created 7.347476210231736 days ago (will be updated when >5 days) ## Update config/hgnc-pubmed/config.yaml => output/tsv/hgnc-pubmed.tsv -< 2024-01-05T18:25:41 hgnc-pubmed +< 2024-01-13T02:46:04 hgnc-pubmed togoid-config config/hgnc-pubmed update # Success: output/tsv/hgnc-pubmed.tsv is updated -> 2024-01-05T18:25:42 hgnc-pubmed +> 2024-01-13T02:46:04 hgnc-pubmed ### Update TSV for hgnc-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-refseq_rna.tsv is newer than config/hgnc-refseq_rna/config.yaml # File output/tsv/hgnc-refseq_rna.tsv has no timestamp file -# File output/tsv/hgnc-refseq_rna.tsv is created 6.985734671536725 days ago (will be updated when >5 days) +# File output/tsv/hgnc-refseq_rna.tsv is created 7.347477640192107 days ago (will be updated when >5 days) ## Update config/hgnc-refseq_rna/config.yaml => output/tsv/hgnc-refseq_rna.tsv -< 2024-01-05T18:25:42 hgnc-refseq_rna +< 2024-01-13T02:46:04 hgnc-refseq_rna togoid-config config/hgnc-refseq_rna update # Success: output/tsv/hgnc-refseq_rna.tsv is updated -> 2024-01-05T18:25:42 hgnc-refseq_rna +> 2024-01-13T02:46:05 hgnc-refseq_rna ### Update TSV for hgnc-rgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-rgd.tsv is newer than config/hgnc-rgd/config.yaml # File output/tsv/hgnc-rgd.tsv has no timestamp file -# File output/tsv/hgnc-rgd.tsv is created 6.9857346755365155 days ago (will be updated when >5 days) +# File output/tsv/hgnc-rgd.tsv is created 7.347478321246689 days ago (will be updated when >5 days) ## Update config/hgnc-rgd/config.yaml => output/tsv/hgnc-rgd.tsv -< 2024-01-05T18:25:42 hgnc-rgd +< 2024-01-13T02:46:05 hgnc-rgd togoid-config config/hgnc-rgd update # Success: output/tsv/hgnc-rgd.tsv is updated -> 2024-01-05T18:25:43 hgnc-rgd +> 2024-01-13T02:46:05 hgnc-rgd ### Update TSV for hgnc-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-uniprot.tsv is newer than config/hgnc-uniprot/config.yaml # File output/tsv/hgnc-uniprot.tsv has no timestamp file -# File output/tsv/hgnc-uniprot.tsv is created 6.985734817326296 days ago (will be updated when >5 days) +# File output/tsv/hgnc-uniprot.tsv is created 7.347478702455265 days ago (will be updated when >5 days) ## Update config/hgnc-uniprot/config.yaml => output/tsv/hgnc-uniprot.tsv -< 2024-01-05T18:25:43 hgnc-uniprot +< 2024-01-13T02:46:05 hgnc-uniprot togoid-config config/hgnc-uniprot update # Success: output/tsv/hgnc-uniprot.tsv is updated -> 2024-01-05T18:25:43 hgnc-uniprot +> 2024-01-13T02:46:06 hgnc-uniprot ### Update TSV for hmdb-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/hmdb-chebi.tsv is newer than config/hmdb-chebi/config.yaml # File output/tsv/hmdb-chebi.tsv is newer than input/hmdb/download.lock @@ -816,56 +1014,64 @@ togoid-config config/hgnc-uniprot update ### Update TSV for hp_inheritance-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hp_inheritance-omim_phenotype.tsv is newer than config/hp_inheritance-omim_phenotype/config.yaml # File output/tsv/hp_inheritance-omim_phenotype.tsv has no timestamp file -# File output/tsv/hp_inheritance-omim_phenotype.tsv is created 6.985729175932129 days ago (will be updated when >5 days) +# File output/tsv/hp_inheritance-omim_phenotype.tsv is created 7.347473575219953 days ago (will be updated when >5 days) ## Update config/hp_inheritance-omim_phenotype/config.yaml => output/tsv/hp_inheritance-omim_phenotype.tsv -< 2024-01-05T18:25:43 hp_inheritance-omim_phenotype +< 2024-01-13T02:46:06 hp_inheritance-omim_phenotype togoid-config config/hp_inheritance-omim_phenotype update # Success: output/tsv/hp_inheritance-omim_phenotype.tsv is updated -> 2024-01-05T18:25:44 hp_inheritance-omim_phenotype -### Update TSV for hp_phenotype-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +> 2024-01-13T02:46:07 hp_inheritance-omim_phenotype +### Update TSV for hp_phenotype-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hp_phenotype-omim_phenotype.tsv is newer than config/hp_phenotype-omim_phenotype/config.yaml -# File output/tsv/hp_phenotype-omim_phenotype.tsv is newer than input/hp_phenotype/download.lock -# => Preserving output/tsv/hp_phenotype-omim_phenotype.tsv -### Update TSV for hp_phenotype-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +# File output/tsv/hp_phenotype-omim_phenotype.tsv is older than input/hp_phenotype/download.lock +## Update config/hp_phenotype-omim_phenotype/config.yaml => output/tsv/hp_phenotype-omim_phenotype.tsv +< 2024-01-13T02:46:07 hp_phenotype-omim_phenotype +togoid-config config/hp_phenotype-omim_phenotype update +# Success: output/tsv/hp_phenotype-omim_phenotype.tsv is updated +> 2024-01-13T02:46:08 hp_phenotype-omim_phenotype +### Update TSV for hp_phenotype-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hp_phenotype-orphanet_phenotype.tsv is newer than config/hp_phenotype-orphanet_phenotype/config.yaml -# File output/tsv/hp_phenotype-orphanet_phenotype.tsv is newer than input/hp_phenotype/download.lock -# => Preserving output/tsv/hp_phenotype-orphanet_phenotype.tsv +# File output/tsv/hp_phenotype-orphanet_phenotype.tsv is older than input/hp_phenotype/download.lock +## Update config/hp_phenotype-orphanet_phenotype/config.yaml => output/tsv/hp_phenotype-orphanet_phenotype.tsv +< 2024-01-13T02:46:08 hp_phenotype-orphanet_phenotype +togoid-config config/hp_phenotype-orphanet_phenotype update +# Success: output/tsv/hp_phenotype-orphanet_phenotype.tsv is updated +> 2024-01-13T02:46:08 hp_phenotype-orphanet_phenotype ### Update TSV for insdc-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc-bioproject.tsv is newer than config/insdc-bioproject/config.yaml # File output/tsv/insdc-bioproject.tsv has no timestamp file -# File output/tsv/insdc-bioproject.tsv is created 6.985470028022905 days ago (will be updated when >5 days) +# File output/tsv/insdc-bioproject.tsv is created 7.347228390945267 days ago (will be updated when >5 days) ## Update config/insdc-bioproject/config.yaml => output/tsv/insdc-bioproject.tsv -< 2024-01-05T18:25:44 insdc-bioproject +< 2024-01-13T02:46:08 insdc-bioproject togoid-config config/insdc-bioproject update # Success: output/tsv/insdc-bioproject.tsv is updated -> 2024-01-05T18:26:08 insdc-bioproject +> 2024-01-13T02:46:32 insdc-bioproject ### Update TSV for insdc-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc-biosample.tsv is newer than config/insdc-biosample/config.yaml # File output/tsv/insdc-biosample.tsv has no timestamp file -# File output/tsv/insdc-biosample.tsv is created 6.984877099099283 days ago (will be updated when >5 days) +# File output/tsv/insdc-biosample.tsv is created 7.346600887246238 days ago (will be updated when >5 days) ## Update config/insdc-biosample/config.yaml => output/tsv/insdc-biosample.tsv -< 2024-01-05T18:26:08 insdc-biosample +< 2024-01-13T02:46:32 insdc-biosample togoid-config config/insdc-biosample update # Success: output/tsv/insdc-biosample.tsv is updated -> 2024-01-05T18:27:25 insdc-biosample +> 2024-01-13T02:47:47 insdc-biosample ### Update TSV for insdc_master-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc_master-bioproject.tsv is newer than config/insdc_master-bioproject/config.yaml # File output/tsv/insdc_master-bioproject.tsv has no timestamp file -# File output/tsv/insdc_master-bioproject.tsv is created 6.985757357076018 days ago (will be updated when >5 days) +# File output/tsv/insdc_master-bioproject.tsv is created 7.3474540699505555 days ago (will be updated when >5 days) ## Update config/insdc_master-bioproject/config.yaml => output/tsv/insdc_master-bioproject.tsv -< 2024-01-05T18:27:25 insdc_master-bioproject +< 2024-01-13T02:47:47 insdc_master-bioproject togoid-config config/insdc_master-bioproject update # Success: output/tsv/insdc_master-bioproject.tsv is updated -> 2024-01-05T18:27:27 insdc_master-bioproject +> 2024-01-13T02:47:49 insdc_master-bioproject ### Update TSV for insdc_master-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc_master-biosample.tsv is newer than config/insdc_master-biosample/config.yaml # File output/tsv/insdc_master-biosample.tsv has no timestamp file -# File output/tsv/insdc_master-biosample.tsv is created 6.985758795248333 days ago (will be updated when >5 days) +# File output/tsv/insdc_master-biosample.tsv is created 7.347452034785485 days ago (will be updated when >5 days) ## Update config/insdc_master-biosample/config.yaml => output/tsv/insdc_master-biosample.tsv -< 2024-01-05T18:27:27 insdc_master-biosample +< 2024-01-13T02:47:49 insdc_master-biosample togoid-config config/insdc_master-biosample update # Success: output/tsv/insdc_master-biosample.tsv is updated -> 2024-01-05T18:27:29 insdc_master-biosample +> 2024-01-13T02:47:50 insdc_master-biosample ### Update TSV for interpro-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/interpro-go.tsv is newer than config/interpro-go/config.yaml # File output/tsv/interpro-go.tsv is newer than input/interpro/download.lock @@ -901,425 +1107,708 @@ togoid-config config/insdc_master-biosample update ### Update TSV for jga_study-jga_dataset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-jga_dataset.tsv is newer than config/jga_study-jga_dataset/config.yaml # File output/tsv/jga_study-jga_dataset.tsv has no timestamp file -# File output/tsv/jga_study-jga_dataset.tsv is created 6.985774385042732 days ago (will be updated when >5 days) +# File output/tsv/jga_study-jga_dataset.tsv is created 7.347465518855648 days ago (will be updated when >5 days) ## Update config/jga_study-jga_dataset/config.yaml => output/tsv/jga_study-jga_dataset.tsv -< 2024-01-05T18:27:29 jga_study-jga_dataset +< 2024-01-13T02:47:50 jga_study-jga_dataset togoid-config config/jga_study-jga_dataset update # Success: output/tsv/jga_study-jga_dataset.tsv is updated -> 2024-01-05T18:27:29 jga_study-jga_dataset +> 2024-01-13T02:47:51 jga_study-jga_dataset ### Update TSV for jga_study-nbdc_human_db if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-nbdc_human_db.tsv is newer than config/jga_study-nbdc_human_db/config.yaml # File output/tsv/jga_study-nbdc_human_db.tsv has no timestamp file -# File output/tsv/jga_study-nbdc_human_db.tsv is created 6.985773564500914 days ago (will be updated when >5 days) +# File output/tsv/jga_study-nbdc_human_db.tsv is created 7.347465579120741 days ago (will be updated when >5 days) ## Update config/jga_study-nbdc_human_db/config.yaml => output/tsv/jga_study-nbdc_human_db.tsv -< 2024-01-05T18:27:29 jga_study-nbdc_human_db +< 2024-01-13T02:47:51 jga_study-nbdc_human_db togoid-config config/jga_study-nbdc_human_db update # Success: output/tsv/jga_study-nbdc_human_db.tsv is updated -> 2024-01-05T18:27:30 jga_study-nbdc_human_db +> 2024-01-13T02:47:51 jga_study-nbdc_human_db ### Update TSV for jga_study-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-pubmed.tsv is newer than config/jga_study-pubmed/config.yaml # File output/tsv/jga_study-pubmed.tsv has no timestamp file -# File output/tsv/jga_study-pubmed.tsv is created 6.9857726819335655 days ago (will be updated when >5 days) +# File output/tsv/jga_study-pubmed.tsv is created 7.347465865742581 days ago (will be updated when >5 days) ## Update config/jga_study-pubmed/config.yaml => output/tsv/jga_study-pubmed.tsv -< 2024-01-05T18:27:30 jga_study-pubmed +< 2024-01-13T02:47:51 jga_study-pubmed togoid-config config/jga_study-pubmed update # Success: output/tsv/jga_study-pubmed.tsv is updated -> 2024-01-05T18:27:30 jga_study-pubmed +> 2024-01-13T02:47:51 jga_study-pubmed ### Update TSV for lipidmaps-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-chebi.tsv is newer than config/lipidmaps-chebi/config.yaml # File output/tsv/lipidmaps-chebi.tsv has no timestamp file -# File output/tsv/lipidmaps-chebi.tsv is created 6.985731123810301 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-chebi.tsv is created 7.347424929212777 days ago (will be updated when >5 days) ## Update config/lipidmaps-chebi/config.yaml => output/tsv/lipidmaps-chebi.tsv -< 2024-01-05T18:27:30 lipidmaps-chebi +< 2024-01-13T02:47:51 lipidmaps-chebi togoid-config config/lipidmaps-chebi update # Success: output/tsv/lipidmaps-chebi.tsv is updated -> 2024-01-05T18:27:34 lipidmaps-chebi +> 2024-01-13T02:47:54 lipidmaps-chebi ### Update TSV for lipidmaps-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-inchi_key.tsv is newer than config/lipidmaps-inchi_key/config.yaml # File output/tsv/lipidmaps-inchi_key.tsv has no timestamp file -# File output/tsv/lipidmaps-inchi_key.tsv is created 6.985743393955706 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-inchi_key.tsv is created 7.347422435918159 days ago (will be updated when >5 days) ## Update config/lipidmaps-inchi_key/config.yaml => output/tsv/lipidmaps-inchi_key.tsv -< 2024-01-05T18:27:34 lipidmaps-inchi_key +< 2024-01-13T02:47:54 lipidmaps-inchi_key togoid-config config/lipidmaps-inchi_key update # Success: output/tsv/lipidmaps-inchi_key.tsv is updated -> 2024-01-05T18:27:37 lipidmaps-inchi_key +> 2024-01-13T02:47:57 lipidmaps-inchi_key ### Update TSV for lipidmaps-swisslipids if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-swisslipids.tsv is newer than config/lipidmaps-swisslipids/config.yaml # File output/tsv/lipidmaps-swisslipids.tsv has no timestamp file -# File output/tsv/lipidmaps-swisslipids.tsv is created 6.985752611039884 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-swisslipids.tsv is created 7.347431275509213 days ago (will be updated when >5 days) ## Update config/lipidmaps-swisslipids/config.yaml => output/tsv/lipidmaps-swisslipids.tsv -< 2024-01-05T18:27:37 lipidmaps-swisslipids +< 2024-01-13T02:47:57 lipidmaps-swisslipids togoid-config config/lipidmaps-swisslipids update # Success: output/tsv/lipidmaps-swisslipids.tsv is updated -> 2024-01-05T18:27:39 lipidmaps-swisslipids +> 2024-01-13T02:48:00 lipidmaps-swisslipids ### Update TSV for mbgd_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mbgd_gene-uniprot.tsv is newer than config/mbgd_gene-uniprot/config.yaml # File output/tsv/mbgd_gene-uniprot.tsv has no timestamp file -# File output/tsv/mbgd_gene-uniprot.tsv is created 6.957654923601366 days ago (will be updated when >5 days) +# File output/tsv/mbgd_gene-uniprot.tsv is created 7.319921057106887 days ago (will be updated when >5 days) ## Update config/mbgd_gene-uniprot/config.yaml => output/tsv/mbgd_gene-uniprot.tsv -< 2024-01-05T18:27:39 mbgd_gene-uniprot +< 2024-01-13T02:48:00 mbgd_gene-uniprot togoid-config config/mbgd_gene-uniprot update +Error: Failed to retrieve taxon:cdg in loop_count:1 +Error: Failed to retrieve taxon:coe in loop_count:1 +Error: Failed to retrieve taxon:ene in loop_count:1 +Error: Failed to retrieve taxon:chr in loop_count:1 +Error: Failed to retrieve taxon:hpyr in loop_count:1 +Error: Failed to retrieve taxon:lmoe in loop_count:1 +Error: Failed to retrieve taxon:gm02408 in loop_count:1 +Error: Failed to retrieve taxon:hhm in loop_count:1 +Error: Failed to retrieve taxon:hpym in loop_count:1 +Error: Failed to retrieve taxon:ctln in loop_count:1 +Error: Failed to retrieve taxon:gm02410 in loop_count:1 +Error: Failed to retrieve taxon:amal in loop_count:1 +Error: Failed to retrieve taxon:lmob in loop_count:1 +Error: Failed to retrieve taxon:cjei in loop_count:1 +Error: Failed to retrieve taxon:sik in loop_count:1 +Error: Failed to retrieve taxon:srb in loop_count:1 +Error: Failed to retrieve taxon:axn in loop_count:1 +Error: Failed to retrieve taxon:gm02954 in loop_count:1 +Error: Failed to retrieve taxon:axo in loop_count:1 +Error: Failed to retrieve taxon:lpm in loop_count:1 +Error: Failed to retrieve taxon:hem in loop_count:1 +Error: Failed to retrieve taxon:hpaz in loop_count:1 +Error: Failed to retrieve taxon:sagr in loop_count:1 +Error: Failed to retrieve taxon:dmg in loop_count:1 +Error: Failed to retrieve taxon:nev in loop_count:1 +Error: Failed to retrieve taxon:gm02988 in loop_count:1 +Error: Failed to retrieve taxon:gm02989 in loop_count:1 +Error: Failed to retrieve taxon:gm02990 in loop_count:1 +Error: Failed to retrieve taxon:gm02835 in loop_count:1 +Error: Failed to retrieve taxon:gm02950 in loop_count:1 +Error: Failed to retrieve taxon:gm02997 in loop_count:1 +Error: Failed to retrieve taxon:bcee in loop_count:1 +Error: Failed to retrieve taxon:gm02986 in loop_count:1 +Error: Failed to retrieve taxon:gm02994 in loop_count:1 +Error: Failed to retrieve taxon:gm02995 in loop_count:1 +Error: Failed to retrieve taxon:gm02996 in loop_count:1 +Error: Failed to retrieve taxon:ppol in loop_count:1 +Error: Failed to retrieve taxon:gm02958 in loop_count:1 +Error: Failed to retrieve taxon:gm02978 in loop_count:1 +Error: Failed to retrieve taxon:gm02979 in loop_count:1 +Error: Failed to retrieve taxon:gm02980 in loop_count:1 +Error: Failed to retrieve taxon:gm02981 in loop_count:1 +Error: Failed to retrieve taxon:gm02993 in loop_count:1 +Error: Failed to retrieve taxon:gm03003 in loop_count:1 +Error: Failed to retrieve taxon:gm03004 in loop_count:1 +Error: Failed to retrieve taxon:gm03005 in loop_count:1 +Error: Failed to retrieve taxon:gm02952 in loop_count:1 +Error: Failed to retrieve taxon:gm02953 in loop_count:1 +Error: Failed to retrieve taxon:nvn in loop_count:1 +Error: Failed to retrieve taxon:gm03001 in loop_count:1 +Error: Failed to retrieve taxon:gm03002 in loop_count:1 +Error: Failed to retrieve taxon:gm03155 in loop_count:1 +Error: Failed to retrieve taxon:gm03139 in loop_count:1 +Error: Failed to retrieve taxon:paec in loop_count:1 +Error: Failed to retrieve taxon:paeo in loop_count:1 +Error: Failed to retrieve taxon:spyo in loop_count:1 +Error: Failed to retrieve taxon:gm03151 in loop_count:1 +Error: Failed to retrieve taxon:gm03336 in loop_count:1 +Error: Failed to retrieve taxon:gm03182 in loop_count:1 +Error: Failed to retrieve taxon:hct in loop_count:1 +Error: Failed to retrieve taxon:paei in loop_count:1 +Error: Failed to retrieve taxon:paev in loop_count:1 +Error: Failed to retrieve taxon:gm03365 in loop_count:1 +Error: Failed to retrieve taxon:sio in loop_count:1 +Error: Failed to retrieve taxon:siq in loop_count:1 +Error: Failed to retrieve taxon:gm03361 in loop_count:1 +Error: Failed to retrieve taxon:gm03425 in loop_count:1 +Error: Failed to retrieve taxon:kpk in loop_count:1 +Error: Failed to retrieve taxon:gm03413 in loop_count:1 +Error: Failed to retrieve taxon:yel in loop_count:1 +Error: Failed to retrieve taxon:gba in loop_count:1 +Error: Failed to retrieve taxon:gm03667 in loop_count:1 +Error: Failed to retrieve taxon:gm03600 in loop_count:1 +Error: Failed to retrieve taxon:nid in loop_count:1 +Error: Failed to retrieve taxon:mthe in loop_count:1 +Error: Failed to retrieve taxon:gm03592 in loop_count:1 +Error: Failed to retrieve taxon:gm03687 in loop_count:1 +Error: Failed to retrieve taxon:gm03688 in loop_count:1 +Error: Failed to retrieve taxon:gm03689 in loop_count:1 +Error: Failed to retrieve taxon:gm03554 in loop_count:1 +Error: Failed to retrieve taxon:alu in loop_count:1 +Error: Failed to retrieve taxon:agw in loop_count:1 +Error: Failed to retrieve taxon:arg in loop_count:1 +Error: Failed to retrieve taxon:gm03624 in loop_count:1 +Error: Failed to retrieve taxon:gm03679 in loop_count:1 +Error: Failed to retrieve taxon:gm03680 in loop_count:1 +Error: Failed to retrieve taxon:gm03681 in loop_count:1 +Error: Failed to retrieve taxon:gm03682 in loop_count:1 +Error: Failed to retrieve taxon:gm03683 in loop_count:1 +Error: Failed to retrieve taxon:gm03684 in loop_count:1 +Error: Failed to retrieve taxon:gm03685 in loop_count:1 +Error: Failed to retrieve taxon:gm03686 in loop_count:1 +Error: Failed to retrieve taxon:gm03674 in loop_count:1 +Error: Failed to retrieve taxon:gm03675 in loop_count:1 +Error: Failed to retrieve taxon:gm03676 in loop_count:1 +Error: Failed to retrieve taxon:gm03677 in loop_count:1 +Error: Failed to retrieve taxon:gm03678 in loop_count:1 +Error: Failed to retrieve taxon:msz in loop_count:1 +Error: Failed to retrieve taxon:bchi in loop_count:1 +Error: Failed to retrieve taxon:bbgw in loop_count:1 +Error: Failed to retrieve taxon:bgw in loop_count:1 +Error: Failed to retrieve taxon:gm04044 in loop_count:1 +Error: Failed to retrieve taxon:hcc in loop_count:1 +Error: Failed to retrieve taxon:hcd in loop_count:1 +Error: Failed to retrieve taxon:srg in loop_count:1 +Error: Failed to retrieve taxon:tmg in loop_count:1 +Error: Failed to retrieve taxon:gm03996 in loop_count:1 +Error: Failed to retrieve taxon:gm04001 in loop_count:1 +Error: Failed to retrieve taxon:plb in loop_count:1 +Error: Failed to retrieve taxon:plc in loop_count:1 +Error: Failed to retrieve taxon:pli in loop_count:1 +Error: Failed to retrieve taxon:gm04124 in loop_count:1 +Error: Failed to retrieve taxon:gm04125 in loop_count:1 +Error: Failed to retrieve taxon:gm06281 in loop_count:1 +Error: Failed to retrieve taxon:gm06283 in loop_count:1 +Error: Failed to retrieve taxon:gm04174 in loop_count:1 +Error: Failed to retrieve taxon:gm04275 in loop_count:1 +Error: Failed to retrieve taxon:gm04705 in loop_count:1 +Error: Failed to retrieve taxon:gm04817 in loop_count:1 +Error: Failed to retrieve taxon:gm04818 in loop_count:1 +Error: Failed to retrieve taxon:gm04824 in loop_count:1 +Error: Failed to retrieve taxon:gm04529 in loop_count:1 +Error: Failed to retrieve taxon:gm04861 in loop_count:1 +Error: Failed to retrieve taxon:gm04864 in loop_count:1 +Error: Failed to retrieve taxon:gm04248 in loop_count:1 +Error: Failed to retrieve taxon:gm04841 in loop_count:1 +Error: Failed to retrieve taxon:gm04842 in loop_count:1 +Error: Failed to retrieve taxon:gm04844 in loop_count:1 +Error: Failed to retrieve taxon:gm04845 in loop_count:1 +Error: Failed to retrieve taxon:gm04870 in loop_count:1 +Error: Failed to retrieve taxon:gm04783 in loop_count:1 +Error: Failed to retrieve taxon:gm04877 in loop_count:1 +Error: Failed to retrieve taxon:gm04788 in loop_count:1 +Error: Failed to retrieve taxon:gm04819 in loop_count:1 +Error: Failed to retrieve taxon:gm04820 in loop_count:1 +Error: Failed to retrieve taxon:senb in loop_count:1 +Error: Failed to retrieve taxon:gm04858 in loop_count:1 +Error: Failed to retrieve taxon:gm04594 in loop_count:1 +Error: Failed to retrieve taxon:gm04596 in loop_count:1 +Error: Failed to retrieve taxon:gm04597 in loop_count:1 +Error: Failed to retrieve taxon:gm04686 in loop_count:1 +Error: Failed to retrieve taxon:gm04825 in loop_count:1 +Error: Failed to retrieve taxon:gm04826 in loop_count:1 +Error: Failed to retrieve taxon:gm04829 in loop_count:1 +Error: Failed to retrieve taxon:gm04830 in loop_count:1 +Error: Failed to retrieve taxon:gm04834 in loop_count:1 +Error: Failed to retrieve taxon:gm04853 in loop_count:1 +Error: Failed to retrieve taxon:gm04854 in loop_count:1 +Error: Failed to retrieve taxon:gm04862 in loop_count:1 +Error: Failed to retrieve taxon:gm04863 in loop_count:1 +Error: Failed to retrieve taxon:gm04804 in loop_count:1 +Error: Failed to retrieve taxon:gm04805 in loop_count:1 +Error: Failed to retrieve taxon:gm04813 in loop_count:1 +Error: Failed to retrieve taxon:gm04814 in loop_count:1 +Error: Failed to retrieve taxon:gm04273 in loop_count:1 +Error: Failed to retrieve taxon:mib in loop_count:1 +Error: Failed to retrieve taxon:wba in loop_count:1 +Error: Failed to retrieve taxon:gm04653 in loop_count:1 +Error: Failed to retrieve taxon:gm04821 in loop_count:1 +Error: Failed to retrieve taxon:gm04822 in loop_count:1 +Error: Failed to retrieve taxon:gm04823 in loop_count:1 +Error: Failed to retrieve taxon:gm04835 in loop_count:1 +Error: Failed to retrieve taxon:gm04836 in loop_count:1 +Error: Failed to retrieve taxon:gm04847 in loop_count:1 +Error: Failed to retrieve taxon:gm04848 in loop_count:1 +Error: Failed to retrieve taxon:gm04598 in loop_count:1 +Error: Failed to retrieve taxon:gm04610 in loop_count:1 +Error: Failed to retrieve taxon:gm04803 in loop_count:1 +Error: Failed to retrieve taxon:gm04810 in loop_count:1 +Error: Failed to retrieve taxon:gm04811 in loop_count:1 +Error: Failed to retrieve taxon:pcv in loop_count:1 +Error: Failed to retrieve taxon:mgb in loop_count:1 +Error: Failed to retrieve taxon:rbu in loop_count:1 +Error: Failed to retrieve taxon:gm04833 in loop_count:1 +Error: Failed to retrieve taxon:gm04839 in loop_count:1 +Error: Failed to retrieve taxon:gm04840 in loop_count:1 +Error: Failed to retrieve taxon:gm04850 in loop_count:1 +Error: Failed to retrieve taxon:gm04851 in loop_count:1 +Error: Failed to retrieve taxon:gm04855 in loop_count:1 +Error: Failed to retrieve taxon:gm04865 in loop_count:1 +Error: Failed to retrieve taxon:gm04866 in loop_count:1 +Error: Failed to retrieve taxon:gm04786 in loop_count:1 +Error: Failed to retrieve taxon:gm04787 in loop_count:1 +Error: Failed to retrieve taxon:gm04807 in loop_count:1 +Error: Failed to retrieve taxon:gm04808 in loop_count:1 +Error: Failed to retrieve taxon:gm04809 in loop_count:1 +Error: Failed to retrieve taxon:gm04815 in loop_count:1 +Error: Failed to retrieve taxon:gm04816 in loop_count:1 +Error: Failed to retrieve taxon:gm04837 in loop_count:1 +Error: Failed to retrieve taxon:gm04838 in loop_count:1 +Error: Failed to retrieve taxon:gm04843 in loop_count:1 +Error: Failed to retrieve taxon:gm04856 in loop_count:1 +Error: Failed to retrieve taxon:gm04857 in loop_count:1 +Error: Failed to retrieve taxon:gm04812 in loop_count:1 +Error: Failed to retrieve taxon:gm06263 in loop_count:1 +Error: Failed to retrieve taxon:gm06264 in loop_count:1 +Error: Failed to retrieve taxon:gm06286 in loop_count:1 +Error: Failed to retrieve taxon:gm06287 in loop_count:1 +Error: Failed to retrieve taxon:gm06288 in loop_count:1 +Error: Failed to retrieve taxon:gm06292 in loop_count:1 +Error: Failed to retrieve taxon:gm06293 in loop_count:1 +Error: Failed to retrieve taxon:gm06315 in loop_count:1 +Error: Failed to retrieve taxon:cgw in loop_count:1 +Error: Failed to retrieve taxon:pwo in loop_count:1 +Error: Failed to retrieve taxon:gm04661 in loop_count:1 +Error: Failed to retrieve taxon:gm04859 in loop_count:1 +Error: Failed to retrieve taxon:gm04860 in loop_count:1 +Error: Failed to retrieve taxon:gm04874 in loop_count:1 +Error: Failed to retrieve taxon:gm04798 in loop_count:1 +Error: Failed to retrieve taxon:gm04799 in loop_count:1 +Error: Failed to retrieve taxon:gm04802 in loop_count:1 +Error: Failed to retrieve taxon:gm05041 in loop_count:1 +Error: Failed to retrieve taxon:gm04827 in loop_count:1 +Error: Failed to retrieve taxon:gm04828 in loop_count:1 +Error: Failed to retrieve taxon:gm04831 in loop_count:1 +Error: Failed to retrieve taxon:gm04832 in loop_count:1 +Error: Failed to retrieve taxon:gm04849 in loop_count:1 +Error: Failed to retrieve taxon:gm04587 in loop_count:1 +Error: Failed to retrieve taxon:gm04871 in loop_count:1 +Error: Failed to retrieve taxon:gm04872 in loop_count:1 +Error: Failed to retrieve taxon:gm04875 in loop_count:1 +Error: Failed to retrieve taxon:gm04876 in loop_count:1 +Error: Failed to retrieve taxon:cum in loop_count:1 +Error: Failed to retrieve taxon:gm06267 in loop_count:1 +Error: Failed to retrieve taxon:gm06365 in loop_count:1 +Error: Failed to retrieve taxon:gm06366 in loop_count:1 +Error: Failed to retrieve taxon:gm06368 in loop_count:1 +Error: Failed to retrieve taxon:gm06369 in loop_count:1 +Error: Failed to retrieve taxon:gm06376 in loop_count:1 +Error: Failed to retrieve taxon:gm06377 in loop_count:1 +Error: Failed to retrieve taxon:gm06403 in loop_count:1 +Error: Failed to retrieve taxon:gm04846 in loop_count:1 +Error: Failed to retrieve taxon:gm04852 in loop_count:1 +Error: Failed to retrieve taxon:gm04867 in loop_count:1 +Error: Failed to retrieve taxon:gm04868 in loop_count:1 +Error: Failed to retrieve taxon:gm04869 in loop_count:1 +Error: Failed to retrieve taxon:gm04873 in loop_count:1 +Error: Failed to retrieve taxon:gm04789 in loop_count:1 +Error: Failed to retrieve taxon:gm04790 in loop_count:1 +Error: Failed to retrieve taxon:gm04791 in loop_count:1 +Error: Failed to retrieve taxon:gm06297 in loop_count:1 +Error: Failed to retrieve taxon:gm06299 in loop_count:1 +Error: Failed to retrieve taxon:gm04792 in loop_count:1 +Error: Failed to retrieve taxon:gm04793 in loop_count:1 +Error: Failed to retrieve taxon:gm04794 in loop_count:1 +Error: Failed to retrieve taxon:gm04795 in loop_count:1 +Error: Failed to retrieve taxon:gm04796 in loop_count:1 +Error: Failed to retrieve taxon:gm04797 in loop_count:1 +Error: Failed to retrieve taxon:gm05497 in loop_count:1 +Error: Failed to retrieve taxon:pspg in loop_count:1 +Error: Failed to retrieve taxon:gm06477 in loop_count:1 +Error: Failed to retrieve taxon:gm04800 in loop_count:1 +Error: Failed to retrieve taxon:gm04801 in loop_count:1 +Error: Failed to retrieve taxon:gm04806 in loop_count:1 +Error: Failed to retrieve taxon:gm06296 in loop_count:1 +Error: Failed to retrieve taxon:prf in loop_count:1 +Error: Failed to retrieve taxon:gm06341 in loop_count:1 +Error: Failed to retrieve taxon:gm06342 in loop_count:1 +Error: Failed to retrieve taxon:gm06304 in loop_count:1 +Error: Failed to retrieve taxon:gm06323 in loop_count:1 +Error: Failed to retrieve taxon:gm06325 in loop_count:1 +Error: Failed to retrieve taxon:anm in loop_count:1 +Error: Failed to retrieve taxon:gm06260 in loop_count:1 +Error: Failed to retrieve taxon:gm06261 in loop_count:1 +Error: Failed to retrieve taxon:gm06262 in loop_count:1 +Error: Failed to retrieve taxon:gm06269 in loop_count:1 +Error: Failed to retrieve taxon:gm06336 in loop_count:1 +Error: Failed to retrieve taxon:gm06373 in loop_count:1 +Error: Failed to retrieve taxon:gm06276 in loop_count:1 +Error: Failed to retrieve taxon:gm06319 in loop_count:1 +Error: Failed to retrieve taxon:gm06338 in loop_count:1 +Error: Failed to retrieve taxon:gm06280 in loop_count:1 +Error: Failed to retrieve taxon:gm06363 in loop_count:1 +Error: Failed to retrieve taxon:gm06364 in loop_count:1 +Error: Failed to retrieve taxon:gm06440 in loop_count:1 +Error: Failed to retrieve taxon:gm06441 in loop_count:1 +Error: Failed to retrieve taxon:gm06347 in loop_count:1 +Error: Failed to retrieve taxon:gao in loop_count:1 +Error: Failed to retrieve taxon:thx in loop_count:1 +Error: Failed to retrieve taxon:cop in loop_count:1 +Error: Failed to retrieve taxon:abd in loop_count:1 +Error: Failed to retrieve taxon:mtg in loop_count:1 +Error: Failed to retrieve taxon:mti in loop_count:1 # Success: output/tsv/mbgd_gene-uniprot.tsv is updated -> 2024-01-05T19:07:19 mbgd_gene-uniprot +> 2024-01-13T03:28:14 mbgd_gene-uniprot ### Update TSV for mbgd_organism-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mbgd_organism-taxonomy.tsv is newer than config/mbgd_organism-taxonomy/config.yaml # File output/tsv/mbgd_organism-taxonomy.tsv has no timestamp file -# File output/tsv/mbgd_organism-taxonomy.tsv is created 6.985189047302766 days ago (will be updated when >5 days) +# File output/tsv/mbgd_organism-taxonomy.tsv is created 7.347854192891864 days ago (will be updated when >5 days) ## Update config/mbgd_organism-taxonomy/config.yaml => output/tsv/mbgd_organism-taxonomy.tsv -< 2024-01-05T19:07:19 mbgd_organism-taxonomy +< 2024-01-13T03:28:14 mbgd_organism-taxonomy togoid-config config/mbgd_organism-taxonomy update # Success: output/tsv/mbgd_organism-taxonomy.tsv is updated -> 2024-01-05T19:07:19 mbgd_organism-taxonomy +> 2024-01-13T03:28:14 mbgd_organism-taxonomy ### Update TSV for medgen-hp_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-hp_phenotype.tsv is newer than config/medgen-hp_phenotype/config.yaml # File output/tsv/medgen-hp_phenotype.tsv has no timestamp file -# File output/tsv/medgen-hp_phenotype.tsv is created 6.985186893293299 days ago (will be updated when >5 days) +# File output/tsv/medgen-hp_phenotype.tsv is created 7.347851738209745 days ago (will be updated when >5 days) ## Update config/medgen-hp_phenotype/config.yaml => output/tsv/medgen-hp_phenotype.tsv -< 2024-01-05T19:07:19 medgen-hp_phenotype +< 2024-01-13T03:28:14 medgen-hp_phenotype togoid-config config/medgen-hp_phenotype update # Success: output/tsv/medgen-hp_phenotype.tsv is updated -> 2024-01-05T19:07:20 medgen-hp_phenotype +> 2024-01-13T03:28:14 medgen-hp_phenotype ### Update TSV for medgen-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-mesh.tsv is newer than config/medgen-mesh/config.yaml # File output/tsv/medgen-mesh.tsv has no timestamp file -# File output/tsv/medgen-mesh.tsv is created 6.985188498756425 days ago (will be updated when >5 days) +# File output/tsv/medgen-mesh.tsv is created 7.347853233602383 days ago (will be updated when >5 days) ## Update config/medgen-mesh/config.yaml => output/tsv/medgen-mesh.tsv -< 2024-01-05T19:07:20 medgen-mesh +< 2024-01-13T03:28:14 medgen-mesh togoid-config config/medgen-mesh update # Success: output/tsv/medgen-mesh.tsv is updated -> 2024-01-05T19:07:20 medgen-mesh +> 2024-01-13T03:28:15 medgen-mesh ### Update TSV for medgen-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-mondo.tsv is newer than config/medgen-mondo/config.yaml # File output/tsv/medgen-mondo.tsv has no timestamp file -# File output/tsv/medgen-mondo.tsv is created 6.985188185412778 days ago (will be updated when >5 days) +# File output/tsv/medgen-mondo.tsv is created 7.347853417531018 days ago (will be updated when >5 days) ## Update config/medgen-mondo/config.yaml => output/tsv/medgen-mondo.tsv -< 2024-01-05T19:07:20 medgen-mondo +< 2024-01-13T03:28:15 medgen-mondo togoid-config config/medgen-mondo update # Success: output/tsv/medgen-mondo.tsv is updated -> 2024-01-05T19:07:20 medgen-mondo +> 2024-01-13T03:28:15 medgen-mondo ### Update TSV for medgen-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-ncbigene.tsv is newer than config/medgen-ncbigene/config.yaml # File output/tsv/medgen-ncbigene.tsv has no timestamp file -# File output/tsv/medgen-ncbigene.tsv is created 6.985188690201308 days ago (will be updated when >5 days) +# File output/tsv/medgen-ncbigene.tsv is created 7.347853879489942 days ago (will be updated when >5 days) ## Update config/medgen-ncbigene/config.yaml => output/tsv/medgen-ncbigene.tsv -< 2024-01-05T19:07:20 medgen-ncbigene +< 2024-01-13T03:28:15 medgen-ncbigene togoid-config config/medgen-ncbigene update # Success: output/tsv/medgen-ncbigene.tsv is updated -> 2024-01-05T19:07:21 medgen-ncbigene +> 2024-01-13T03:28:16 medgen-ncbigene ### Update TSV for medgen-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-omim_phenotype.tsv is newer than config/medgen-omim_phenotype/config.yaml # File output/tsv/medgen-omim_phenotype.tsv has no timestamp file -# File output/tsv/medgen-omim_phenotype.tsv is created 6.9851883665049534 days ago (will be updated when >5 days) +# File output/tsv/medgen-omim_phenotype.tsv is created 7.347854224072141 days ago (will be updated when >5 days) ## Update config/medgen-omim_phenotype/config.yaml => output/tsv/medgen-omim_phenotype.tsv -< 2024-01-05T19:07:21 medgen-omim_phenotype +< 2024-01-13T03:28:16 medgen-omim_phenotype togoid-config config/medgen-omim_phenotype update # Success: output/tsv/medgen-omim_phenotype.tsv is updated -> 2024-01-05T19:07:21 medgen-omim_phenotype +> 2024-01-13T03:28:16 medgen-omim_phenotype ### Update TSV for medgen-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-orphanet_phenotype.tsv is newer than config/medgen-orphanet_phenotype/config.yaml # File output/tsv/medgen-orphanet_phenotype.tsv has no timestamp file -# File output/tsv/medgen-orphanet_phenotype.tsv is created 6.985188135973797 days ago (will be updated when >5 days) +# File output/tsv/medgen-orphanet_phenotype.tsv is created 7.34785437555309 days ago (will be updated when >5 days) ## Update config/medgen-orphanet_phenotype/config.yaml => output/tsv/medgen-orphanet_phenotype.tsv -< 2024-01-05T19:07:21 medgen-orphanet_phenotype +< 2024-01-13T03:28:16 medgen-orphanet_phenotype togoid-config config/medgen-orphanet_phenotype update # Success: output/tsv/medgen-orphanet_phenotype.tsv is updated -> 2024-01-05T19:07:22 medgen-orphanet_phenotype +> 2024-01-13T03:28:17 medgen-orphanet_phenotype ### Update TSV for mgi_gene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-ensembl_gene.tsv is newer than config/mgi_gene-ensembl_gene/config.yaml # File output/tsv/mgi_gene-ensembl_gene.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-ensembl_gene/config.yaml => output/tsv/mgi_gene-ensembl_gene.tsv -< 2024-01-05T19:07:22 mgi_gene-ensembl_gene +< 2024-01-13T03:28:17 mgi_gene-ensembl_gene togoid-config config/mgi_gene-ensembl_gene update # Success: output/tsv/mgi_gene-ensembl_gene.tsv is updated -> 2024-01-05T19:07:22 mgi_gene-ensembl_gene +> 2024-01-13T03:28:17 mgi_gene-ensembl_gene ### Update TSV for mgi_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-hgnc.tsv is newer than config/mgi_gene-hgnc/config.yaml # File output/tsv/mgi_gene-hgnc.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-hgnc/config.yaml => output/tsv/mgi_gene-hgnc.tsv -< 2024-01-05T19:07:22 mgi_gene-hgnc +< 2024-01-13T03:28:17 mgi_gene-hgnc togoid-config config/mgi_gene-hgnc update # Success: output/tsv/mgi_gene-hgnc.tsv is updated -> 2024-01-05T19:07:23 mgi_gene-hgnc +> 2024-01-13T03:28:18 mgi_gene-hgnc ### Update TSV for mgi_gene-mgi_allele if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-mgi_allele.tsv is newer than config/mgi_gene-mgi_allele/config.yaml # File output/tsv/mgi_gene-mgi_allele.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-mgi_allele/config.yaml => output/tsv/mgi_gene-mgi_allele.tsv -< 2024-01-05T19:07:23 mgi_gene-mgi_allele +< 2024-01-13T03:28:18 mgi_gene-mgi_allele togoid-config config/mgi_gene-mgi_allele update # Success: output/tsv/mgi_gene-mgi_allele.tsv is updated -> 2024-01-05T19:07:24 mgi_gene-mgi_allele +> 2024-01-13T03:28:19 mgi_gene-mgi_allele ### Update TSV for mgi_gene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-ncbigene.tsv is newer than config/mgi_gene-ncbigene/config.yaml # File output/tsv/mgi_gene-ncbigene.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-ncbigene/config.yaml => output/tsv/mgi_gene-ncbigene.tsv -< 2024-01-05T19:07:24 mgi_gene-ncbigene +< 2024-01-13T03:28:19 mgi_gene-ncbigene togoid-config config/mgi_gene-ncbigene update # Success: output/tsv/mgi_gene-ncbigene.tsv is updated -> 2024-01-05T19:07:24 mgi_gene-ncbigene +> 2024-01-13T03:28:19 mgi_gene-ncbigene ### Update TSV for mgi_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-uniprot.tsv is newer than config/mgi_gene-uniprot/config.yaml # File output/tsv/mgi_gene-uniprot.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-uniprot/config.yaml => output/tsv/mgi_gene-uniprot.tsv -< 2024-01-05T19:07:25 mgi_gene-uniprot +< 2024-01-13T03:28:19 mgi_gene-uniprot togoid-config config/mgi_gene-uniprot update # Success: output/tsv/mgi_gene-uniprot.tsv is updated -> 2024-01-05T19:07:25 mgi_gene-uniprot +> 2024-01-13T03:28:20 mgi_gene-uniprot ### Update TSV for mgi_genotype-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-doid.tsv is newer than config/mgi_genotype-doid/config.yaml # File output/tsv/mgi_genotype-doid.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-doid/config.yaml => output/tsv/mgi_genotype-doid.tsv -< 2024-01-05T19:07:25 mgi_genotype-doid +< 2024-01-13T03:28:20 mgi_genotype-doid togoid-config config/mgi_genotype-doid update # Success: output/tsv/mgi_genotype-doid.tsv is updated -> 2024-01-05T19:07:28 mgi_genotype-doid +> 2024-01-13T03:28:22 mgi_genotype-doid ### Update TSV for mgi_genotype-mgi_allele if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-mgi_allele.tsv is newer than config/mgi_genotype-mgi_allele/config.yaml # File output/tsv/mgi_genotype-mgi_allele.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-mgi_allele/config.yaml => output/tsv/mgi_genotype-mgi_allele.tsv -< 2024-01-05T19:07:28 mgi_genotype-mgi_allele +< 2024-01-13T03:28:22 mgi_genotype-mgi_allele togoid-config config/mgi_genotype-mgi_allele update # Success: output/tsv/mgi_genotype-mgi_allele.tsv is updated -> 2024-01-05T19:07:29 mgi_genotype-mgi_allele +> 2024-01-13T03:28:23 mgi_genotype-mgi_allele ### Update TSV for mgi_genotype-mp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-mp.tsv is newer than config/mgi_genotype-mp/config.yaml # File output/tsv/mgi_genotype-mp.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-mp/config.yaml => output/tsv/mgi_genotype-mp.tsv -< 2024-01-05T19:07:29 mgi_genotype-mp +< 2024-01-13T03:28:23 mgi_genotype-mp togoid-config config/mgi_genotype-mp update # Success: output/tsv/mgi_genotype-mp.tsv is updated -> 2024-01-05T19:07:31 mgi_genotype-mp +> 2024-01-13T03:28:26 mgi_genotype-mp ### Update TSV for mondo-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-doid.tsv is newer than config/mondo-doid/config.yaml # File output/tsv/mondo-doid.tsv has no timestamp file -# File output/tsv/mondo-doid.tsv is created 6.985185531228402 days ago (will be updated when >5 days) +# File output/tsv/mondo-doid.tsv is created 7.347847338490254 days ago (will be updated when >5 days) ## Update config/mondo-doid/config.yaml => output/tsv/mondo-doid.tsv -< 2024-01-05T19:07:31 mondo-doid +< 2024-01-13T03:28:26 mondo-doid togoid-config config/mondo-doid update # Success: output/tsv/mondo-doid.tsv is updated -> 2024-01-05T19:07:32 mondo-doid +> 2024-01-13T03:28:26 mondo-doid ### Update TSV for mondo-hp_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-hp_phenotype.tsv is newer than config/mondo-hp_phenotype/config.yaml # File output/tsv/mondo-hp_phenotype.tsv has no timestamp file -# File output/tsv/mondo-hp_phenotype.tsv is created 6.985185989165601 days ago (will be updated when >5 days) +# File output/tsv/mondo-hp_phenotype.tsv is created 7.347849055683356 days ago (will be updated when >5 days) ## Update config/mondo-hp_phenotype/config.yaml => output/tsv/mondo-hp_phenotype.tsv -< 2024-01-05T19:07:32 mondo-hp_phenotype +< 2024-01-13T03:28:26 mondo-hp_phenotype togoid-config config/mondo-hp_phenotype update # Success: output/tsv/mondo-hp_phenotype.tsv is updated -> 2024-01-05T19:07:32 mondo-hp_phenotype +> 2024-01-13T03:28:27 mondo-hp_phenotype ### Update TSV for mondo-meddra if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-meddra.tsv is newer than config/mondo-meddra/config.yaml # File output/tsv/mondo-meddra.tsv has no timestamp file -# File output/tsv/mondo-meddra.tsv is created 6.985185309521204 days ago (will be updated when >5 days) +# File output/tsv/mondo-meddra.tsv is created 7.347849649326538 days ago (will be updated when >5 days) ## Update config/mondo-meddra/config.yaml => output/tsv/mondo-meddra.tsv -< 2024-01-05T19:07:32 mondo-meddra +< 2024-01-13T03:28:27 mondo-meddra togoid-config config/mondo-meddra update # Success: output/tsv/mondo-meddra.tsv is updated -> 2024-01-05T19:07:32 mondo-meddra +> 2024-01-13T03:28:27 mondo-meddra ### Update TSV for mondo-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-mesh.tsv is newer than config/mondo-mesh/config.yaml # File output/tsv/mondo-mesh.tsv has no timestamp file -# File output/tsv/mondo-mesh.tsv is created 6.985185920856899 days ago (will be updated when >5 days) +# File output/tsv/mondo-mesh.tsv is created 7.347838452461886 days ago (will be updated when >5 days) ## Update config/mondo-mesh/config.yaml => output/tsv/mondo-mesh.tsv -< 2024-01-05T19:07:32 mondo-mesh +< 2024-01-13T03:28:27 mondo-mesh togoid-config config/mondo-mesh update # Success: output/tsv/mondo-mesh.tsv is updated -> 2024-01-05T19:07:34 mondo-mesh +> 2024-01-13T03:28:28 mondo-mesh ### Update TSV for mondo-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-omim_phenotype.tsv is newer than config/mondo-omim_phenotype/config.yaml # File output/tsv/mondo-omim_phenotype.tsv has no timestamp file -# File output/tsv/mondo-omim_phenotype.tsv is created 6.985197592108518 days ago (will be updated when >5 days) +# File output/tsv/mondo-omim_phenotype.tsv is created 7.3478403710731826 days ago (will be updated when >5 days) ## Update config/mondo-omim_phenotype/config.yaml => output/tsv/mondo-omim_phenotype.tsv -< 2024-01-05T19:07:34 mondo-omim_phenotype +< 2024-01-13T03:28:28 mondo-omim_phenotype togoid-config config/mondo-omim_phenotype update # Success: output/tsv/mondo-omim_phenotype.tsv is updated -> 2024-01-05T19:07:34 mondo-omim_phenotype +> 2024-01-13T03:28:28 mondo-omim_phenotype ### Update TSV for mondo-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-orphanet_phenotype.tsv is newer than config/mondo-orphanet_phenotype/config.yaml # File output/tsv/mondo-orphanet_phenotype.tsv has no timestamp file -# File output/tsv/mondo-orphanet_phenotype.tsv is created 6.985196784590682 days ago (will be updated when >5 days) +# File output/tsv/mondo-orphanet_phenotype.tsv is created 7.347841174915556 days ago (will be updated when >5 days) ## Update config/mondo-orphanet_phenotype/config.yaml => output/tsv/mondo-orphanet_phenotype.tsv -< 2024-01-05T19:07:34 mondo-orphanet_phenotype +< 2024-01-13T03:28:28 mondo-orphanet_phenotype togoid-config config/mondo-orphanet_phenotype update # Success: output/tsv/mondo-orphanet_phenotype.tsv is updated -> 2024-01-05T19:07:35 mondo-orphanet_phenotype +> 2024-01-13T03:28:29 mondo-orphanet_phenotype ### Update TSV for nando-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/nando-mondo.tsv is newer than config/nando-mondo/config.yaml # File output/tsv/nando-mondo.tsv has no timestamp file -# File output/tsv/nando-mondo.tsv is created 6.985197606619815 days ago (will be updated when >5 days) +# File output/tsv/nando-mondo.tsv is created 7.347830510702188 days ago (will be updated when >5 days) ## Update config/nando-mondo/config.yaml => output/tsv/nando-mondo.tsv -< 2024-01-05T19:07:35 nando-mondo +< 2024-01-13T03:28:29 nando-mondo togoid-config config/nando-mondo update # Success: output/tsv/nando-mondo.tsv is updated -> 2024-01-05T19:07:36 nando-mondo +> 2024-01-13T03:28:29 nando-mondo ### Update TSV for ncbigene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_gene.tsv is newer than config/ncbigene-ensembl_gene/config.yaml # File output/tsv/ncbigene-ensembl_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_gene/config.yaml => output/tsv/ncbigene-ensembl_gene.tsv -< 2024-01-05T19:07:36 ncbigene-ensembl_gene +< 2024-01-13T03:28:29 ncbigene-ensembl_gene togoid-config config/ncbigene-ensembl_gene update # Success: output/tsv/ncbigene-ensembl_gene.tsv is updated -> 2024-01-05T19:08:06 ncbigene-ensembl_gene +> 2024-01-13T03:28:57 ncbigene-ensembl_gene ### Update TSV for ncbigene-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_protein.tsv is newer than config/ncbigene-ensembl_protein/config.yaml # File output/tsv/ncbigene-ensembl_protein.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_protein/config.yaml => output/tsv/ncbigene-ensembl_protein.tsv -< 2024-01-05T19:08:06 ncbigene-ensembl_protein +< 2024-01-13T03:28:57 ncbigene-ensembl_protein togoid-config config/ncbigene-ensembl_protein update # Success: output/tsv/ncbigene-ensembl_protein.tsv is updated -> 2024-01-05T19:09:01 ncbigene-ensembl_protein +> 2024-01-13T03:29:52 ncbigene-ensembl_protein ### Update TSV for ncbigene-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_transcript.tsv is newer than config/ncbigene-ensembl_transcript/config.yaml # File output/tsv/ncbigene-ensembl_transcript.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_transcript/config.yaml => output/tsv/ncbigene-ensembl_transcript.tsv -< 2024-01-05T19:09:01 ncbigene-ensembl_transcript +< 2024-01-13T03:29:52 ncbigene-ensembl_transcript togoid-config config/ncbigene-ensembl_transcript update # Success: output/tsv/ncbigene-ensembl_transcript.tsv is updated -> 2024-01-05T19:09:51 ncbigene-ensembl_transcript +> 2024-01-13T03:30:42 ncbigene-ensembl_transcript ### Update TSV for ncbigene-flybase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-flybase_gene.tsv is newer than config/ncbigene-flybase_gene/config.yaml # File output/tsv/ncbigene-flybase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-flybase_gene/config.yaml => output/tsv/ncbigene-flybase_gene.tsv -< 2024-01-05T19:09:51 ncbigene-flybase_gene +< 2024-01-13T03:30:42 ncbigene-flybase_gene togoid-config config/ncbigene-flybase_gene update # Success: output/tsv/ncbigene-flybase_gene.tsv is updated -> 2024-01-05T19:11:01 ncbigene-flybase_gene +> 2024-01-13T03:31:51 ncbigene-flybase_gene ### Update TSV for ncbigene-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-go.tsv is newer than config/ncbigene-go/config.yaml # File output/tsv/ncbigene-go.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-go/config.yaml => output/tsv/ncbigene-go.tsv -< 2024-01-05T19:11:01 ncbigene-go +< 2024-01-13T03:31:51 ncbigene-go togoid-config config/ncbigene-go update # Success: output/tsv/ncbigene-go.tsv is updated -> 2024-01-05T19:15:06 ncbigene-go +> 2024-01-13T03:36:04 ncbigene-go ### Update TSV for ncbigene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-hgnc.tsv is newer than config/ncbigene-hgnc/config.yaml # File output/tsv/ncbigene-hgnc.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-hgnc/config.yaml => output/tsv/ncbigene-hgnc.tsv -< 2024-01-05T19:15:06 ncbigene-hgnc +< 2024-01-13T03:36:04 ncbigene-hgnc togoid-config config/ncbigene-hgnc update # Success: output/tsv/ncbigene-hgnc.tsv is updated -> 2024-01-05T19:15:07 ncbigene-hgnc +> 2024-01-13T03:36:05 ncbigene-hgnc ### Update TSV for ncbigene-mgi_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-mgi_gene.tsv is newer than config/ncbigene-mgi_gene/config.yaml # File output/tsv/ncbigene-mgi_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-mgi_gene/config.yaml => output/tsv/ncbigene-mgi_gene.tsv -< 2024-01-05T19:15:07 ncbigene-mgi_gene +< 2024-01-13T03:36:05 ncbigene-mgi_gene togoid-config config/ncbigene-mgi_gene update # Success: output/tsv/ncbigene-mgi_gene.tsv is updated -> 2024-01-05T19:16:14 ncbigene-mgi_gene +> 2024-01-13T03:37:08 ncbigene-mgi_gene ### Update TSV for ncbigene-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-mirbase.tsv is newer than config/ncbigene-mirbase/config.yaml # File output/tsv/ncbigene-mirbase.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-mirbase/config.yaml => output/tsv/ncbigene-mirbase.tsv -< 2024-01-05T19:16:14 ncbigene-mirbase +< 2024-01-13T03:37:08 ncbigene-mirbase togoid-config config/ncbigene-mirbase update # Success: output/tsv/ncbigene-mirbase.tsv is updated -> 2024-01-05T19:17:46 ncbigene-mirbase +> 2024-01-13T03:38:39 ncbigene-mirbase ### Update TSV for ncbigene-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-omim_gene.tsv is newer than config/ncbigene-omim_gene/config.yaml # File output/tsv/ncbigene-omim_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-omim_gene/config.yaml => output/tsv/ncbigene-omim_gene.tsv -< 2024-01-05T19:17:46 ncbigene-omim_gene +< 2024-01-13T03:38:39 ncbigene-omim_gene togoid-config config/ncbigene-omim_gene update # Success: output/tsv/ncbigene-omim_gene.tsv is updated -> 2024-01-05T19:17:47 ncbigene-omim_gene +> 2024-01-13T03:38:40 ncbigene-omim_gene ### Update TSV for ncbigene-refseq_genomic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_genomic.tsv is newer than config/ncbigene-refseq_genomic/config.yaml # File output/tsv/ncbigene-refseq_genomic.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_genomic/config.yaml => output/tsv/ncbigene-refseq_genomic.tsv -< 2024-01-05T19:17:47 ncbigene-refseq_genomic +< 2024-01-13T03:38:40 ncbigene-refseq_genomic togoid-config config/ncbigene-refseq_genomic update # Success: output/tsv/ncbigene-refseq_genomic.tsv is updated -> 2024-01-05T19:21:28 ncbigene-refseq_genomic +> 2024-01-13T03:42:16 ncbigene-refseq_genomic ### Update TSV for ncbigene-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_protein.tsv is newer than config/ncbigene-refseq_protein/config.yaml # File output/tsv/ncbigene-refseq_protein.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_protein/config.yaml => output/tsv/ncbigene-refseq_protein.tsv -< 2024-01-05T19:21:28 ncbigene-refseq_protein +< 2024-01-13T03:42:16 ncbigene-refseq_protein togoid-config config/ncbigene-refseq_protein update # Success: output/tsv/ncbigene-refseq_protein.tsv is updated -> 2024-01-05T19:25:34 ncbigene-refseq_protein +> 2024-01-13T03:46:21 ncbigene-refseq_protein ### Update TSV for ncbigene-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_rna.tsv is newer than config/ncbigene-refseq_rna/config.yaml # File output/tsv/ncbigene-refseq_rna.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_rna/config.yaml => output/tsv/ncbigene-refseq_rna.tsv -< 2024-01-05T19:25:34 ncbigene-refseq_rna +< 2024-01-13T03:46:21 ncbigene-refseq_rna togoid-config config/ncbigene-refseq_rna update # Success: output/tsv/ncbigene-refseq_rna.tsv is updated -> 2024-01-05T19:29:02 ncbigene-refseq_rna +> 2024-01-13T03:49:56 ncbigene-refseq_rna ### Update TSV for ncbigene-rgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-rgd.tsv is newer than config/ncbigene-rgd/config.yaml # File output/tsv/ncbigene-rgd.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-rgd/config.yaml => output/tsv/ncbigene-rgd.tsv -< 2024-01-05T19:29:02 ncbigene-rgd +< 2024-01-13T03:49:56 ncbigene-rgd togoid-config config/ncbigene-rgd update # Success: output/tsv/ncbigene-rgd.tsv is updated -> 2024-01-05T19:29:58 ncbigene-rgd +> 2024-01-13T03:50:52 ncbigene-rgd ### Update TSV for ncbigene-sgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-sgd.tsv is newer than config/ncbigene-sgd/config.yaml # File output/tsv/ncbigene-sgd.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-sgd/config.yaml => output/tsv/ncbigene-sgd.tsv -< 2024-01-05T19:29:58 ncbigene-sgd +< 2024-01-13T03:50:52 ncbigene-sgd togoid-config config/ncbigene-sgd update # Success: output/tsv/ncbigene-sgd.tsv is updated -> 2024-01-05T19:31:04 ncbigene-sgd +> 2024-01-13T03:51:57 ncbigene-sgd ### Update TSV for ncbigene-tair if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-tair.tsv is newer than config/ncbigene-tair/config.yaml # File output/tsv/ncbigene-tair.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-tair/config.yaml => output/tsv/ncbigene-tair.tsv -< 2024-01-05T19:31:04 ncbigene-tair +< 2024-01-13T03:51:57 ncbigene-tair togoid-config config/ncbigene-tair update # Success: output/tsv/ncbigene-tair.tsv is updated -> 2024-01-05T19:32:08 ncbigene-tair +> 2024-01-13T03:53:02 ncbigene-tair ### Update TSV for ncbigene-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-taxonomy.tsv is newer than config/ncbigene-taxonomy/config.yaml # File output/tsv/ncbigene-taxonomy.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-taxonomy/config.yaml => output/tsv/ncbigene-taxonomy.tsv -< 2024-01-05T19:32:08 ncbigene-taxonomy +< 2024-01-13T03:53:02 ncbigene-taxonomy togoid-config config/ncbigene-taxonomy update # Success: output/tsv/ncbigene-taxonomy.tsv is updated -> 2024-01-05T19:32:48 ncbigene-taxonomy +> 2024-01-13T03:53:41 ncbigene-taxonomy ### Update TSV for ncbigene-vgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-vgnc.tsv is newer than config/ncbigene-vgnc/config.yaml # File output/tsv/ncbigene-vgnc.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-vgnc/config.yaml => output/tsv/ncbigene-vgnc.tsv -< 2024-01-05T19:32:48 ncbigene-vgnc +< 2024-01-13T03:53:41 ncbigene-vgnc togoid-config config/ncbigene-vgnc update # Success: output/tsv/ncbigene-vgnc.tsv is updated -> 2024-01-05T19:33:54 ncbigene-vgnc +> 2024-01-13T03:54:46 ncbigene-vgnc ### Update TSV for ncbigene-wormbase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-wormbase_gene.tsv is newer than config/ncbigene-wormbase_gene/config.yaml # File output/tsv/ncbigene-wormbase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-wormbase_gene/config.yaml => output/tsv/ncbigene-wormbase_gene.tsv -< 2024-01-05T19:33:54 ncbigene-wormbase_gene +< 2024-01-13T03:54:46 ncbigene-wormbase_gene togoid-config config/ncbigene-wormbase_gene update # Success: output/tsv/ncbigene-wormbase_gene.tsv is updated -> 2024-01-05T19:34:59 ncbigene-wormbase_gene +> 2024-01-13T03:55:53 ncbigene-wormbase_gene ### Update TSV for ncbigene-xenbase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-xenbase_gene.tsv is newer than config/ncbigene-xenbase_gene/config.yaml # File output/tsv/ncbigene-xenbase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-xenbase_gene/config.yaml => output/tsv/ncbigene-xenbase_gene.tsv -< 2024-01-05T19:34:59 ncbigene-xenbase_gene +< 2024-01-13T03:55:53 ncbigene-xenbase_gene togoid-config config/ncbigene-xenbase_gene update # Success: output/tsv/ncbigene-xenbase_gene.tsv is updated -> 2024-01-05T19:36:04 ncbigene-xenbase_gene +> 2024-01-13T03:56:58 ncbigene-xenbase_gene ### Update TSV for ncbigene-zfin_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-zfin_gene.tsv is newer than config/ncbigene-zfin_gene/config.yaml # File output/tsv/ncbigene-zfin_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-zfin_gene/config.yaml => output/tsv/ncbigene-zfin_gene.tsv -< 2024-01-05T19:36:04 ncbigene-zfin_gene +< 2024-01-13T03:56:58 ncbigene-zfin_gene togoid-config config/ncbigene-zfin_gene update # Success: output/tsv/ncbigene-zfin_gene.tsv is updated -> 2024-01-05T19:37:09 ncbigene-zfin_gene +> 2024-01-13T03:58:03 ncbigene-zfin_gene ### Update TSV for ncit_disease-ncit_tissue if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncit_disease-ncit_tissue.tsv is newer than config/ncit_disease-ncit_tissue/config.yaml # File output/tsv/ncit_disease-ncit_tissue.tsv has no timestamp file -# File output/tsv/ncit_disease-ncit_tissue.tsv is created 6.984428724137847 days ago (will be updated when >5 days) +# File output/tsv/ncit_disease-ncit_tissue.tsv is created 7.347806640821447 days ago (will be updated when >5 days) ## Update config/ncit_disease-ncit_tissue/config.yaml => output/tsv/ncit_disease-ncit_tissue.tsv -< 2024-01-05T19:37:09 ncit_disease-ncit_tissue +< 2024-01-13T03:58:03 ncit_disease-ncit_tissue togoid-config config/ncit_disease-ncit_tissue update # Success: output/tsv/ncit_disease-ncit_tissue.tsv is updated -> 2024-01-05T19:37:12 ncit_disease-ncit_tissue +> 2024-01-13T03:58:06 ncit_disease-ncit_tissue ### Update TSV for oma_protein-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/oma_protein-ensembl_gene.tsv is newer than config/oma_protein-ensembl_gene/config.yaml # File output/tsv/oma_protein-ensembl_gene.tsv is newer than input/oma_protein/download.lock @@ -1339,120 +1828,120 @@ togoid-config config/ncit_disease-ncit_tissue update ### Update TSV for orphanet_gene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-ensembl_gene.tsv is newer than config/orphanet_gene-ensembl_gene/config.yaml # File output/tsv/orphanet_gene-ensembl_gene.tsv has no timestamp file -# File output/tsv/orphanet_gene-ensembl_gene.tsv is created 6.984456320023912 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-ensembl_gene.tsv is created 7.347834999744734 days ago (will be updated when >5 days) ## Update config/orphanet_gene-ensembl_gene/config.yaml => output/tsv/orphanet_gene-ensembl_gene.tsv -< 2024-01-05T19:37:12 orphanet_gene-ensembl_gene +< 2024-01-13T03:58:06 orphanet_gene-ensembl_gene togoid-config config/orphanet_gene-ensembl_gene update # Success: output/tsv/orphanet_gene-ensembl_gene.tsv is updated -> 2024-01-05T19:37:13 orphanet_gene-ensembl_gene +> 2024-01-13T03:58:06 orphanet_gene-ensembl_gene ### Update TSV for orphanet_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-hgnc.tsv is newer than config/orphanet_gene-hgnc/config.yaml # File output/tsv/orphanet_gene-hgnc.tsv has no timestamp file -# File output/tsv/orphanet_gene-hgnc.tsv is created 6.984456325921342 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-hgnc.tsv is created 7.347834988590821 days ago (will be updated when >5 days) ## Update config/orphanet_gene-hgnc/config.yaml => output/tsv/orphanet_gene-hgnc.tsv -< 2024-01-05T19:37:13 orphanet_gene-hgnc +< 2024-01-13T03:58:06 orphanet_gene-hgnc togoid-config config/orphanet_gene-hgnc update # Success: output/tsv/orphanet_gene-hgnc.tsv is updated -> 2024-01-05T19:37:13 orphanet_gene-hgnc +> 2024-01-13T03:58:07 orphanet_gene-hgnc ### Update TSV for orphanet_gene-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-omim_gene.tsv is newer than config/orphanet_gene-omim_gene/config.yaml # File output/tsv/orphanet_gene-omim_gene.tsv has no timestamp file -# File output/tsv/orphanet_gene-omim_gene.tsv is created 6.984456656976493 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-omim_gene.tsv is created 7.347836905570672 days ago (will be updated when >5 days) ## Update config/orphanet_gene-omim_gene/config.yaml => output/tsv/orphanet_gene-omim_gene.tsv -< 2024-01-05T19:37:13 orphanet_gene-omim_gene +< 2024-01-13T03:58:07 orphanet_gene-omim_gene togoid-config config/orphanet_gene-omim_gene update # Success: output/tsv/orphanet_gene-omim_gene.tsv is updated -> 2024-01-05T19:37:14 orphanet_gene-omim_gene +> 2024-01-13T03:58:07 orphanet_gene-omim_gene ### Update TSV for orphanet_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-uniprot.tsv is newer than config/orphanet_gene-uniprot/config.yaml # File output/tsv/orphanet_gene-uniprot.tsv has no timestamp file -# File output/tsv/orphanet_gene-uniprot.tsv is created 6.984455689355417 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-uniprot.tsv is created 7.347838089518403 days ago (will be updated when >5 days) ## Update config/orphanet_gene-uniprot/config.yaml => output/tsv/orphanet_gene-uniprot.tsv -< 2024-01-05T19:37:14 orphanet_gene-uniprot +< 2024-01-13T03:58:07 orphanet_gene-uniprot togoid-config config/orphanet_gene-uniprot update # Success: output/tsv/orphanet_gene-uniprot.tsv is updated -> 2024-01-05T19:37:14 orphanet_gene-uniprot +> 2024-01-13T03:58:08 orphanet_gene-uniprot ### Update TSV for orphanet_phenotype-meddra if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-meddra.tsv is newer than config/orphanet_phenotype-meddra/config.yaml # File output/tsv/orphanet_phenotype-meddra.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-meddra.tsv is created 6.984455715017441 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-meddra.tsv is created 7.3478392510354285 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-meddra/config.yaml => output/tsv/orphanet_phenotype-meddra.tsv -< 2024-01-05T19:37:14 orphanet_phenotype-meddra +< 2024-01-13T03:58:08 orphanet_phenotype-meddra togoid-config config/orphanet_phenotype-meddra update # Success: output/tsv/orphanet_phenotype-meddra.tsv is updated -> 2024-01-05T19:37:14 orphanet_phenotype-meddra +> 2024-01-13T03:58:08 orphanet_phenotype-meddra ### Update TSV for orphanet_phenotype-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-mesh.tsv is newer than config/orphanet_phenotype-mesh/config.yaml # File output/tsv/orphanet_phenotype-mesh.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-mesh.tsv is created 6.984454673282767 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-mesh.tsv is created 7.347842157469178 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-mesh/config.yaml => output/tsv/orphanet_phenotype-mesh.tsv -< 2024-01-05T19:37:14 orphanet_phenotype-mesh +< 2024-01-13T03:58:08 orphanet_phenotype-mesh togoid-config config/orphanet_phenotype-mesh update # Success: output/tsv/orphanet_phenotype-mesh.tsv is updated -> 2024-01-05T19:37:15 orphanet_phenotype-mesh +> 2024-01-13T03:58:09 orphanet_phenotype-mesh ### Update TSV for orphanet_phenotype-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-omim_phenotype.tsv is newer than config/orphanet_phenotype-omim_phenotype/config.yaml # File output/tsv/orphanet_phenotype-omim_phenotype.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-omim_phenotype.tsv is created 6.984454278660289 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-omim_phenotype.tsv is created 7.347842672274745 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-omim_phenotype/config.yaml => output/tsv/orphanet_phenotype-omim_phenotype.tsv -< 2024-01-05T19:37:15 orphanet_phenotype-omim_phenotype +< 2024-01-13T03:58:09 orphanet_phenotype-omim_phenotype togoid-config config/orphanet_phenotype-omim_phenotype update # Success: output/tsv/orphanet_phenotype-omim_phenotype.tsv is updated -> 2024-01-05T19:37:15 orphanet_phenotype-omim_phenotype +> 2024-01-13T03:58:09 orphanet_phenotype-omim_phenotype ### Update TSV for orphanet_phenotype-orphanet_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-orphanet_gene.tsv is newer than config/orphanet_phenotype-orphanet_gene/config.yaml # File output/tsv/orphanet_phenotype-orphanet_gene.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-orphanet_gene.tsv is created 6.984454177319827 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-orphanet_gene.tsv is created 7.347844624457431 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-orphanet_gene/config.yaml => output/tsv/orphanet_phenotype-orphanet_gene.tsv -< 2024-01-05T19:37:15 orphanet_phenotype-orphanet_gene +< 2024-01-13T03:58:09 orphanet_phenotype-orphanet_gene togoid-config config/orphanet_phenotype-orphanet_gene update # Success: output/tsv/orphanet_phenotype-orphanet_gene.tsv is updated -> 2024-01-05T19:37:15 orphanet_phenotype-orphanet_gene +> 2024-01-13T03:58:10 orphanet_phenotype-orphanet_gene ### Update TSV for pdb-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-go.tsv is newer than config/pdb-go/config.yaml # File output/tsv/pdb-go.tsv has no timestamp file -# File output/tsv/pdb-go.tsv is created 6.984413302688496 days ago (will be updated when >5 days) +# File output/tsv/pdb-go.tsv is created 7.347798490345984 days ago (will be updated when >5 days) ## Update config/pdb-go/config.yaml => output/tsv/pdb-go.tsv -< 2024-01-05T19:37:15 pdb-go +< 2024-01-13T03:58:10 pdb-go togoid-config config/pdb-go update # Success: output/tsv/pdb-go.tsv is updated -> 2024-01-05T19:37:20 pdb-go +> 2024-01-13T03:58:14 pdb-go ### Update TSV for pdb-interpro if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-interpro.tsv is newer than config/pdb-interpro/config.yaml # File output/tsv/pdb-interpro.tsv has no timestamp file -# File output/tsv/pdb-interpro.tsv is created 6.98443917183816 days ago (will be updated when >5 days) +# File output/tsv/pdb-interpro.tsv is created 7.347834010747292 days ago (will be updated when >5 days) ## Update config/pdb-interpro/config.yaml => output/tsv/pdb-interpro.tsv -< 2024-01-05T19:37:20 pdb-interpro +< 2024-01-13T03:58:14 pdb-interpro togoid-config config/pdb-interpro update # Success: output/tsv/pdb-interpro.tsv is updated -> 2024-01-05T19:37:21 pdb-interpro +> 2024-01-13T03:58:16 pdb-interpro ### Update TSV for pdb-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-pdb_ccd.tsv is newer than config/pdb-pdb_ccd/config.yaml # File output/tsv/pdb-pdb_ccd.tsv has no timestamp file -# File output/tsv/pdb-pdb_ccd.tsv is created 6.984443353555718 days ago (will be updated when >5 days) +# File output/tsv/pdb-pdb_ccd.tsv is created 7.3478390337495485 days ago (will be updated when >5 days) ## Update config/pdb-pdb_ccd/config.yaml => output/tsv/pdb-pdb_ccd.tsv -< 2024-01-05T19:37:21 pdb-pdb_ccd +< 2024-01-13T03:58:16 pdb-pdb_ccd togoid-config config/pdb-pdb_ccd update # Success: output/tsv/pdb-pdb_ccd.tsv is updated -> 2024-01-05T19:37:23 pdb-pdb_ccd +> 2024-01-13T03:58:17 pdb-pdb_ccd ### Update TSV for pdb-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-pfam.tsv is newer than config/pdb-pfam/config.yaml # File output/tsv/pdb-pfam.tsv has no timestamp file -# File output/tsv/pdb-pfam.tsv is created 6.984445519174908 days ago (will be updated when >5 days) +# File output/tsv/pdb-pfam.tsv is created 7.347843123474976 days ago (will be updated when >5 days) ## Update config/pdb-pfam/config.yaml => output/tsv/pdb-pfam.tsv -< 2024-01-05T19:37:23 pdb-pfam +< 2024-01-13T03:58:17 pdb-pfam togoid-config config/pdb-pfam update # Success: output/tsv/pdb-pfam.tsv is updated -> 2024-01-05T19:37:23 pdb-pfam +> 2024-01-13T03:58:18 pdb-pfam ### Update TSV for pdb-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-uniprot.tsv is newer than config/pdb-uniprot/config.yaml # File output/tsv/pdb-uniprot.tsv has no timestamp file -# File output/tsv/pdb-uniprot.tsv is created 6.98444453129022 days ago (will be updated when >5 days) +# File output/tsv/pdb-uniprot.tsv is created 7.347843056822025 days ago (will be updated when >5 days) ## Update config/pdb-uniprot/config.yaml => output/tsv/pdb-uniprot.tsv -< 2024-01-05T19:37:23 pdb-uniprot +< 2024-01-13T03:58:18 pdb-uniprot togoid-config config/pdb-uniprot update # Success: output/tsv/pdb-uniprot.tsv is updated -> 2024-01-05T19:37:24 pdb-uniprot +> 2024-01-13T03:58:19 pdb-uniprot ### Update TSV for prosite-prosite_prorule if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/prosite-prosite_prorule.tsv is newer than config/prosite-prosite_prorule/config.yaml # File output/tsv/prosite-prosite_prorule.tsv is newer than input/prosite/download.lock @@ -1460,217 +1949,217 @@ togoid-config config/pdb-uniprot update ### Update TSV for pubchem_compound-atc if check_tsv_filesize false or check_config_timestamp true or check_tsv_timestamp true # File output/tsv/pubchem_compound-atc.tsv is older than config/pubchem_compound-atc/config.yaml ## Update config/pubchem_compound-atc/config.yaml => output/tsv/pubchem_compound-atc.tsv -< 2024-01-05T19:37:24 pubchem_compound-atc +< 2024-01-13T03:58:19 pubchem_compound-atc togoid-config config/pubchem_compound-atc update # Error: output/tsv/pubchem_compound-atc.tsv new file size per old 28643 / 72636 = 0.39433614185803184 < 0.5 # Failure: output/tsv/pubchem_compound-atc.tsv is not updated -> 2024-01-05T19:37:25 pubchem_compound-atc +> 2024-01-13T03:58:20 pubchem_compound-atc ### Update TSV for pubchem_compound-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-chebi.tsv is newer than config/pubchem_compound-chebi/config.yaml # File output/tsv/pubchem_compound-chebi.tsv has no timestamp file -# File output/tsv/pubchem_compound-chebi.tsv is created 6.984448451944421 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-chebi.tsv is created 7.347849965434699 days ago (will be updated when >5 days) ## Update config/pubchem_compound-chebi/config.yaml => output/tsv/pubchem_compound-chebi.tsv -< 2024-01-05T19:37:25 pubchem_compound-chebi +< 2024-01-13T03:58:20 pubchem_compound-chebi togoid-config config/pubchem_compound-chebi update # Success: output/tsv/pubchem_compound-chebi.tsv is updated -> 2024-01-05T19:37:26 pubchem_compound-chebi +> 2024-01-13T03:58:20 pubchem_compound-chebi ### Update TSV for pubchem_compound-chembl_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-chembl_compound.tsv is newer than config/pubchem_compound-chembl_compound/config.yaml # File output/tsv/pubchem_compound-chembl_compound.tsv has no timestamp file -# File output/tsv/pubchem_compound-chembl_compound.tsv is created 6.984392668823923 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-chembl_compound.tsv is created 7.347801119022465 days ago (will be updated when >5 days) ## Update config/pubchem_compound-chembl_compound/config.yaml => output/tsv/pubchem_compound-chembl_compound.tsv -< 2024-01-05T19:37:26 pubchem_compound-chembl_compound +< 2024-01-13T03:58:20 pubchem_compound-chembl_compound togoid-config config/pubchem_compound-chembl_compound update # Success: output/tsv/pubchem_compound-chembl_compound.tsv is updated -> 2024-01-05T19:37:30 pubchem_compound-chembl_compound +> 2024-01-13T03:58:26 pubchem_compound-chembl_compound ### Update TSV for pubchem_compound-drugbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-drugbank.tsv is newer than config/pubchem_compound-drugbank/config.yaml # File output/tsv/pubchem_compound-drugbank.tsv has no timestamp file -# File output/tsv/pubchem_compound-drugbank.tsv is created 6.984444245645058 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-drugbank.tsv is created 7.347856470514561 days ago (will be updated when >5 days) ## Update config/pubchem_compound-drugbank/config.yaml => output/tsv/pubchem_compound-drugbank.tsv -< 2024-01-05T19:37:30 pubchem_compound-drugbank +< 2024-01-13T03:58:26 pubchem_compound-drugbank togoid-config config/pubchem_compound-drugbank update # Success: output/tsv/pubchem_compound-drugbank.tsv is updated -> 2024-01-05T19:37:31 pubchem_compound-drugbank +> 2024-01-13T03:58:26 pubchem_compound-drugbank ### Update TSV for pubchem_compound-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-glytoucan.tsv is newer than config/pubchem_compound-glytoucan/config.yaml # File output/tsv/pubchem_compound-glytoucan.tsv has no timestamp file -# File output/tsv/pubchem_compound-glytoucan.tsv is created 6.9844431627074774 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-glytoucan.tsv is created 7.347857218522154 days ago (will be updated when >5 days) ## Update config/pubchem_compound-glytoucan/config.yaml => output/tsv/pubchem_compound-glytoucan.tsv -< 2024-01-05T19:37:31 pubchem_compound-glytoucan +< 2024-01-13T03:58:26 pubchem_compound-glytoucan togoid-config config/pubchem_compound-glytoucan update # Success: output/tsv/pubchem_compound-glytoucan.tsv is updated -> 2024-01-05T19:37:31 pubchem_compound-glytoucan +> 2024-01-13T03:58:27 pubchem_compound-glytoucan ### Update TSV for pubchem_compound-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-inchi_key.tsv is newer than config/pubchem_compound-inchi_key/config.yaml # File output/tsv/pubchem_compound-inchi_key.tsv has no timestamp file -# File output/tsv/pubchem_compound-inchi_key.tsv is created 6.966122060366724 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-inchi_key.tsv is created 7.342587294840996 days ago (will be updated when >5 days) ## Update config/pubchem_compound-inchi_key/config.yaml => output/tsv/pubchem_compound-inchi_key.tsv -< 2024-01-05T19:37:31 pubchem_compound-inchi_key +< 2024-01-13T03:58:27 pubchem_compound-inchi_key togoid-config config/pubchem_compound-inchi_key update # Success: output/tsv/pubchem_compound-inchi_key.tsv is updated -> 2024-01-05T19:45:07 pubchem_compound-inchi_key +> 2024-01-13T04:05:29 pubchem_compound-inchi_key ### Update TSV for pubchem_pathway-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-ncbigene.tsv is newer than config/pubchem_pathway-ncbigene/config.yaml # File output/tsv/pubchem_pathway-ncbigene.tsv has no timestamp file -# File output/tsv/pubchem_pathway-ncbigene.tsv is created 6.971391551073102 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-ncbigene.tsv is created 7.347475264365312 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-ncbigene/config.yaml => output/tsv/pubchem_pathway-ncbigene.tsv -< 2024-01-05T19:45:07 pubchem_pathway-ncbigene +< 2024-01-13T04:05:29 pubchem_pathway-ncbigene togoid-config config/pubchem_pathway-ncbigene update # Success: output/tsv/pubchem_pathway-ncbigene.tsv is updated -> 2024-01-05T19:45:08 pubchem_pathway-ncbigene +> 2024-01-13T04:05:30 pubchem_pathway-ncbigene ### Update TSV for pubchem_pathway-pathbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-pathbank.tsv is newer than config/pubchem_pathway-pathbank/config.yaml # File output/tsv/pubchem_pathway-pathbank.tsv has no timestamp file -# File output/tsv/pubchem_pathway-pathbank.tsv is created 6.971391984966006 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-pathbank.tsv is created 7.3474783354074775 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-pathbank/config.yaml => output/tsv/pubchem_pathway-pathbank.tsv -< 2024-01-05T19:45:08 pubchem_pathway-pathbank +< 2024-01-13T04:05:30 pubchem_pathway-pathbank togoid-config config/pubchem_pathway-pathbank update # Success: output/tsv/pubchem_pathway-pathbank.tsv is updated -> 2024-01-05T19:45:08 pubchem_pathway-pathbank +> 2024-01-13T04:05:31 pubchem_pathway-pathbank ### Update TSV for pubchem_pathway-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-pubchem_compound.tsv is newer than config/pubchem_pathway-pubchem_compound/config.yaml # File output/tsv/pubchem_pathway-pubchem_compound.tsv has no timestamp file -# File output/tsv/pubchem_pathway-pubchem_compound.tsv is created 6.971365101723299 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-pubchem_compound.tsv is created 7.347453460092881 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-pubchem_compound/config.yaml => output/tsv/pubchem_pathway-pubchem_compound.tsv -< 2024-01-05T19:45:08 pubchem_pathway-pubchem_compound +< 2024-01-13T04:05:31 pubchem_pathway-pubchem_compound togoid-config config/pubchem_pathway-pubchem_compound update # Success: output/tsv/pubchem_pathway-pubchem_compound.tsv is updated -> 2024-01-05T19:45:11 pubchem_pathway-pubchem_compound +> 2024-01-13T04:05:34 pubchem_pathway-pubchem_compound ### Update TSV for pubchem_pathway-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-reactome_pathway.tsv is newer than config/pubchem_pathway-reactome_pathway/config.yaml # File output/tsv/pubchem_pathway-reactome_pathway.tsv has no timestamp file -# File output/tsv/pubchem_pathway-reactome_pathway.tsv is created 6.971389889956817 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-reactome_pathway.tsv is created 7.347485057220081 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-reactome_pathway/config.yaml => output/tsv/pubchem_pathway-reactome_pathway.tsv -< 2024-01-05T19:45:11 pubchem_pathway-reactome_pathway +< 2024-01-13T04:05:34 pubchem_pathway-reactome_pathway togoid-config config/pubchem_pathway-reactome_pathway update # Success: output/tsv/pubchem_pathway-reactome_pathway.tsv is updated -> 2024-01-05T19:45:11 pubchem_pathway-reactome_pathway +> 2024-01-13T04:05:34 pubchem_pathway-reactome_pathway ### Update TSV for pubchem_pathway-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-uniprot.tsv is newer than config/pubchem_pathway-uniprot/config.yaml # File output/tsv/pubchem_pathway-uniprot.tsv has no timestamp file -# File output/tsv/pubchem_pathway-uniprot.tsv is created 6.971375752113218 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-uniprot.tsv is created 7.34747322567507 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-uniprot/config.yaml => output/tsv/pubchem_pathway-uniprot.tsv -< 2024-01-05T19:45:11 pubchem_pathway-uniprot +< 2024-01-13T04:05:34 pubchem_pathway-uniprot togoid-config config/pubchem_pathway-uniprot update # Success: output/tsv/pubchem_pathway-uniprot.tsv is updated -> 2024-01-05T19:45:12 pubchem_pathway-uniprot +> 2024-01-13T04:05:36 pubchem_pathway-uniprot ### Update TSV for pubchem_pathway-wikipathways if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-wikipathways.tsv is newer than config/pubchem_pathway-wikipathways/config.yaml # File output/tsv/pubchem_pathway-wikipathways.tsv has no timestamp file -# File output/tsv/pubchem_pathway-wikipathways.tsv is created 6.971388186711967 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-wikipathways.tsv is created 7.347487119738356 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-wikipathways/config.yaml => output/tsv/pubchem_pathway-wikipathways.tsv -< 2024-01-05T19:45:12 pubchem_pathway-wikipathways +< 2024-01-13T04:05:36 pubchem_pathway-wikipathways togoid-config config/pubchem_pathway-wikipathways update # Success: output/tsv/pubchem_pathway-wikipathways.tsv is updated -> 2024-01-05T19:45:13 pubchem_pathway-wikipathways +> 2024-01-13T04:05:36 pubchem_pathway-wikipathways ### Update TSV for reactome_pathway-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-chebi.tsv is newer than config/reactome_pathway-chebi/config.yaml # File output/tsv/reactome_pathway-chebi.tsv has no timestamp file -# File output/tsv/reactome_pathway-chebi.tsv is created 6.971387655725904 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-chebi.tsv is created 7.347485432999827 days ago (will be updated when >5 days) ## Update config/reactome_pathway-chebi/config.yaml => output/tsv/reactome_pathway-chebi.tsv -< 2024-01-05T19:45:13 reactome_pathway-chebi +< 2024-01-13T04:05:36 reactome_pathway-chebi togoid-config config/reactome_pathway-chebi update # Success: output/tsv/reactome_pathway-chebi.tsv is updated -> 2024-01-05T19:45:13 reactome_pathway-chebi +> 2024-01-13T04:05:37 reactome_pathway-chebi ### Update TSV for reactome_pathway-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-go.tsv is newer than config/reactome_pathway-go/config.yaml # File output/tsv/reactome_pathway-go.tsv has no timestamp file -# File output/tsv/reactome_pathway-go.tsv is created 6.971389762061528 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-go.tsv is created 7.3474879441809255 days ago (will be updated when >5 days) ## Update config/reactome_pathway-go/config.yaml => output/tsv/reactome_pathway-go.tsv -< 2024-01-05T19:45:13 reactome_pathway-go +< 2024-01-13T04:05:37 reactome_pathway-go togoid-config config/reactome_pathway-go update # Success: output/tsv/reactome_pathway-go.tsv is updated -> 2024-01-05T19:45:14 reactome_pathway-go +> 2024-01-13T04:05:37 reactome_pathway-go ### Update TSV for reactome_pathway-iuphar_ligand if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-iuphar_ligand.tsv is newer than config/reactome_pathway-iuphar_ligand/config.yaml # File output/tsv/reactome_pathway-iuphar_ligand.tsv has no timestamp file -# File output/tsv/reactome_pathway-iuphar_ligand.tsv is created 6.971391471520972 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-iuphar_ligand.tsv is created 7.347489547525683 days ago (will be updated when >5 days) ## Update config/reactome_pathway-iuphar_ligand/config.yaml => output/tsv/reactome_pathway-iuphar_ligand.tsv -< 2024-01-05T19:45:14 reactome_pathway-iuphar_ligand +< 2024-01-13T04:05:37 reactome_pathway-iuphar_ligand togoid-config config/reactome_pathway-iuphar_ligand update # Success: output/tsv/reactome_pathway-iuphar_ligand.tsv is updated -> 2024-01-05T19:45:14 reactome_pathway-iuphar_ligand +> 2024-01-13T04:05:38 reactome_pathway-iuphar_ligand ### Update TSV for reactome_pathway-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-mirbase.tsv is newer than config/reactome_pathway-mirbase/config.yaml # File output/tsv/reactome_pathway-mirbase.tsv has no timestamp file -# File output/tsv/reactome_pathway-mirbase.tsv is created 6.971392880226459 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-mirbase.tsv is created 7.347491041748796 days ago (will be updated when >5 days) ## Update config/reactome_pathway-mirbase/config.yaml => output/tsv/reactome_pathway-mirbase.tsv -< 2024-01-05T19:45:14 reactome_pathway-mirbase +< 2024-01-13T04:05:38 reactome_pathway-mirbase togoid-config config/reactome_pathway-mirbase update # Success: output/tsv/reactome_pathway-mirbase.tsv is updated -> 2024-01-05T19:45:14 reactome_pathway-mirbase +> 2024-01-13T04:05:38 reactome_pathway-mirbase ### Update TSV for reactome_pathway-reactome_reaction if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-reactome_reaction.tsv is newer than config/reactome_pathway-reactome_reaction/config.yaml # File output/tsv/reactome_pathway-reactome_reaction.tsv has no timestamp file -# File output/tsv/reactome_pathway-reactome_reaction.tsv is created 6.9713820828214015 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-reactome_reaction.tsv is created 7.347477582407303 days ago (will be updated when >5 days) ## Update config/reactome_pathway-reactome_reaction/config.yaml => output/tsv/reactome_pathway-reactome_reaction.tsv -< 2024-01-05T19:45:14 reactome_pathway-reactome_reaction +< 2024-01-13T04:05:38 reactome_pathway-reactome_reaction togoid-config config/reactome_pathway-reactome_reaction update # Success: output/tsv/reactome_pathway-reactome_reaction.tsv is updated -> 2024-01-05T19:45:16 reactome_pathway-reactome_reaction +> 2024-01-13T04:05:39 reactome_pathway-reactome_reaction ### Update TSV for reactome_pathway-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-uniprot.tsv is newer than config/reactome_pathway-uniprot/config.yaml # File output/tsv/reactome_pathway-uniprot.tsv has no timestamp file -# File output/tsv/reactome_pathway-uniprot.tsv is created 6.971382628565277 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-uniprot.tsv is created 7.3474769619242135 days ago (will be updated when >5 days) ## Update config/reactome_pathway-uniprot/config.yaml => output/tsv/reactome_pathway-uniprot.tsv -< 2024-01-05T19:45:16 reactome_pathway-uniprot +< 2024-01-13T04:05:39 reactome_pathway-uniprot togoid-config config/reactome_pathway-uniprot update # Success: output/tsv/reactome_pathway-uniprot.tsv is updated -> 2024-01-05T19:45:17 reactome_pathway-uniprot +> 2024-01-13T04:05:40 reactome_pathway-uniprot ### Update TSV for reactome_reaction-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-chebi.tsv is newer than config/reactome_reaction-chebi/config.yaml # File output/tsv/reactome_reaction-chebi.tsv has no timestamp file -# File output/tsv/reactome_reaction-chebi.tsv is created 6.971392112698275 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-chebi.tsv is created 7.347485837236297 days ago (will be updated when >5 days) ## Update config/reactome_reaction-chebi/config.yaml => output/tsv/reactome_reaction-chebi.tsv -< 2024-01-05T19:45:17 reactome_reaction-chebi +< 2024-01-13T04:05:40 reactome_reaction-chebi togoid-config config/reactome_reaction-chebi update # Success: output/tsv/reactome_reaction-chebi.tsv is updated -> 2024-01-05T19:45:18 reactome_reaction-chebi +> 2024-01-13T04:05:41 reactome_reaction-chebi ### Update TSV for reactome_reaction-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-go.tsv is newer than config/reactome_reaction-go/config.yaml # File output/tsv/reactome_reaction-go.tsv has no timestamp file -# File output/tsv/reactome_reaction-go.tsv is created 6.9713942327867136 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-go.tsv is created 7.347486704618426 days ago (will be updated when >5 days) ## Update config/reactome_reaction-go/config.yaml => output/tsv/reactome_reaction-go.tsv -< 2024-01-05T19:45:18 reactome_reaction-go +< 2024-01-13T04:05:41 reactome_reaction-go togoid-config config/reactome_reaction-go update # Success: output/tsv/reactome_reaction-go.tsv is updated -> 2024-01-05T19:45:18 reactome_reaction-go +> 2024-01-13T04:05:41 reactome_reaction-go ### Update TSV for reactome_reaction-iuphar_ligand if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-iuphar_ligand.tsv is newer than config/reactome_reaction-iuphar_ligand/config.yaml # File output/tsv/reactome_reaction-iuphar_ligand.tsv has no timestamp file -# File output/tsv/reactome_reaction-iuphar_ligand.tsv is created 6.971395514507743 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-iuphar_ligand.tsv is created 7.3474886790705325 days ago (will be updated when >5 days) ## Update config/reactome_reaction-iuphar_ligand/config.yaml => output/tsv/reactome_reaction-iuphar_ligand.tsv -< 2024-01-05T19:45:18 reactome_reaction-iuphar_ligand +< 2024-01-13T04:05:41 reactome_reaction-iuphar_ligand togoid-config config/reactome_reaction-iuphar_ligand update # Success: output/tsv/reactome_reaction-iuphar_ligand.tsv is updated -> 2024-01-05T19:45:18 reactome_reaction-iuphar_ligand +> 2024-01-13T04:05:42 reactome_reaction-iuphar_ligand ### Update TSV for reactome_reaction-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-mirbase.tsv is newer than config/reactome_reaction-mirbase/config.yaml # File output/tsv/reactome_reaction-mirbase.tsv has no timestamp file -# File output/tsv/reactome_reaction-mirbase.tsv is created 6.971396367507315 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-mirbase.tsv is created 7.34748895151169 days ago (will be updated when >5 days) ## Update config/reactome_reaction-mirbase/config.yaml => output/tsv/reactome_reaction-mirbase.tsv -< 2024-01-05T19:45:18 reactome_reaction-mirbase +< 2024-01-13T04:05:42 reactome_reaction-mirbase togoid-config config/reactome_reaction-mirbase update # Success: output/tsv/reactome_reaction-mirbase.tsv is updated -> 2024-01-05T19:45:19 reactome_reaction-mirbase +> 2024-01-13T04:05:42 reactome_reaction-mirbase ### Update TSV for reactome_reaction-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-uniprot.tsv is newer than config/reactome_reaction-uniprot/config.yaml # File output/tsv/reactome_reaction-uniprot.tsv has no timestamp file -# File output/tsv/reactome_reaction-uniprot.tsv is created 6.971385880311481 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-uniprot.tsv is created 7.347477858530428 days ago (will be updated when >5 days) ## Update config/reactome_reaction-uniprot/config.yaml => output/tsv/reactome_reaction-uniprot.tsv -< 2024-01-05T19:45:19 reactome_reaction-uniprot +< 2024-01-13T04:05:42 reactome_reaction-uniprot togoid-config config/reactome_reaction-uniprot update # Success: output/tsv/reactome_reaction-uniprot.tsv is updated -> 2024-01-05T19:45:20 reactome_reaction-uniprot +> 2024-01-13T04:05:43 reactome_reaction-uniprot ### Update TSV for refseq_protein-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/refseq_protein-uniprot.tsv is newer than config/refseq_protein-uniprot/config.yaml # File output/tsv/refseq_protein-uniprot.tsv is older than input/refseq_protein/download.lock ## Update config/refseq_protein-uniprot/config.yaml => output/tsv/refseq_protein-uniprot.tsv -< 2024-01-05T19:45:20 refseq_protein-uniprot +< 2024-01-13T04:05:43 refseq_protein-uniprot togoid-config config/refseq_protein-uniprot update # Success: output/tsv/refseq_protein-uniprot.tsv is updated -> 2024-01-05T19:52:10 refseq_protein-uniprot +> 2024-01-13T04:12:24 refseq_protein-uniprot ### Update TSV for refseq_rna-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/refseq_rna-dbsnp.tsv is newer than config/refseq_rna-dbsnp/config.yaml # File output/tsv/refseq_rna-dbsnp.tsv is newer than input/refseq_rna/download.lock @@ -1726,281 +2215,281 @@ togoid-config config/refseq_protein-uniprot update ### Update TSV for sra_accession-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-bioproject.tsv is newer than config/sra_accession-bioproject/config.yaml # File output/tsv/sra_accession-bioproject.tsv has no timestamp file -# File output/tsv/sra_accession-bioproject.tsv is created 6.969346387754907 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-bioproject.tsv is created 7.346144714059919 days ago (will be updated when >5 days) ## Update config/sra_accession-bioproject/config.yaml => output/tsv/sra_accession-bioproject.tsv -< 2024-01-05T19:52:10 sra_accession-bioproject +< 2024-01-13T04:12:24 sra_accession-bioproject togoid-config config/sra_accession-bioproject update # Success: output/tsv/sra_accession-bioproject.tsv is updated -> 2024-01-05T19:53:57 sra_accession-bioproject +> 2024-01-13T04:14:21 sra_accession-bioproject ### Update TSV for sra_accession-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-biosample.tsv is newer than config/sra_accession-biosample/config.yaml # File output/tsv/sra_accession-biosample.tsv has no timestamp file -# File output/tsv/sra_accession-biosample.tsv is created 6.965757797300209 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-biosample.tsv is created 7.342558431281875 days ago (will be updated when >5 days) ## Update config/sra_accession-biosample/config.yaml => output/tsv/sra_accession-biosample.tsv -< 2024-01-05T19:53:57 sra_accession-biosample +< 2024-01-13T04:14:21 sra_accession-biosample togoid-config config/sra_accession-biosample update # Success: output/tsv/sra_accession-biosample.tsv is updated -> 2024-01-05T20:01:04 sra_accession-biosample +> 2024-01-13T04:21:11 sra_accession-biosample ### Update TSV for sra_accession-sra_analysis if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_analysis.tsv is newer than config/sra_accession-sra_analysis/config.yaml # File output/tsv/sra_accession-sra_analysis.tsv has no timestamp file -# File output/tsv/sra_accession-sra_analysis.tsv is created 6.9700002286689235 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_analysis.tsv is created 7.346607565306621 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_analysis/config.yaml => output/tsv/sra_accession-sra_analysis.tsv -< 2024-01-05T20:01:04 sra_accession-sra_analysis +< 2024-01-13T04:21:11 sra_accession-sra_analysis togoid-config config/sra_accession-sra_analysis update # Success: output/tsv/sra_accession-sra_analysis.tsv is updated -> 2024-01-05T20:02:04 sra_accession-sra_analysis +> 2024-01-13T04:22:12 sra_accession-sra_analysis ### Update TSV for sra_accession-sra_experiment if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_experiment.tsv is newer than config/sra_accession-sra_experiment/config.yaml # File output/tsv/sra_accession-sra_experiment.tsv has no timestamp file -# File output/tsv/sra_accession-sra_experiment.tsv is created 6.966401674089931 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_experiment.tsv is created 7.343104589965012 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_experiment/config.yaml => output/tsv/sra_accession-sra_experiment.tsv -< 2024-01-05T20:02:04 sra_accession-sra_experiment +< 2024-01-13T04:22:12 sra_accession-sra_experiment togoid-config config/sra_accession-sra_experiment update # Success: output/tsv/sra_accession-sra_experiment.tsv is updated -> 2024-01-05T20:08:08 sra_accession-sra_experiment +> 2024-01-13T04:28:07 sra_accession-sra_experiment ### Update TSV for sra_accession-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_project.tsv is newer than config/sra_accession-sra_project/config.yaml # File output/tsv/sra_accession-sra_project.tsv has no timestamp file -# File output/tsv/sra_accession-sra_project.tsv is created 6.969926277974629 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_project.tsv is created 7.346516502129063 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_project/config.yaml => output/tsv/sra_accession-sra_project.tsv -< 2024-01-05T20:08:08 sra_accession-sra_project +< 2024-01-13T04:28:07 sra_accession-sra_project togoid-config config/sra_accession-sra_project update # Success: output/tsv/sra_accession-sra_project.tsv is updated -> 2024-01-05T20:09:08 sra_accession-sra_project +> 2024-01-13T04:29:09 sra_accession-sra_project ### Update TSV for sra_accession-sra_run if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_run.tsv is newer than config/sra_accession-sra_run/config.yaml # File output/tsv/sra_accession-sra_run.tsv has no timestamp file -# File output/tsv/sra_accession-sra_run.tsv is created 6.965908281329977 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_run.tsv is created 7.3424588294 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_run/config.yaml => output/tsv/sra_accession-sra_run.tsv -< 2024-01-05T20:09:08 sra_accession-sra_run +< 2024-01-13T04:29:09 sra_accession-sra_run togoid-config config/sra_accession-sra_run update # Success: output/tsv/sra_accession-sra_run.tsv is updated -> 2024-01-05T20:16:00 sra_accession-sra_run +> 2024-01-13T04:36:07 sra_accession-sra_run ### Update TSV for sra_accession-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_sample.tsv is newer than config/sra_accession-sra_sample/config.yaml # File output/tsv/sra_accession-sra_sample.tsv has no timestamp file -# File output/tsv/sra_accession-sra_sample.tsv is created 6.966573641423391 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_sample.tsv is created 7.343212448699108 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_sample/config.yaml => output/tsv/sra_accession-sra_sample.tsv -< 2024-01-05T20:16:00 sra_accession-sra_sample +< 2024-01-13T04:36:07 sra_accession-sra_sample togoid-config config/sra_accession-sra_sample update # Success: output/tsv/sra_accession-sra_sample.tsv is updated -> 2024-01-05T20:21:53 sra_accession-sra_sample +> 2024-01-13T04:42:09 sra_accession-sra_sample ### Update TSV for sra_experiment-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-bioproject.tsv is newer than config/sra_experiment-bioproject/config.yaml # File output/tsv/sra_experiment-bioproject.tsv has no timestamp file -# File output/tsv/sra_experiment-bioproject.tsv is created 6.968191354041365 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-bioproject.tsv is created 7.345080593922014 days ago (will be updated when >5 days) ## Update config/sra_experiment-bioproject/config.yaml => output/tsv/sra_experiment-bioproject.tsv -< 2024-01-05T20:21:53 sra_experiment-bioproject +< 2024-01-13T04:42:09 sra_experiment-bioproject togoid-config config/sra_experiment-bioproject update # Success: output/tsv/sra_experiment-bioproject.tsv is updated -> 2024-01-05T20:25:14 sra_experiment-bioproject +> 2024-01-13T04:45:33 sra_experiment-bioproject ### Update TSV for sra_experiment-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-biosample.tsv is newer than config/sra_experiment-biosample/config.yaml # File output/tsv/sra_experiment-biosample.tsv has no timestamp file -# File output/tsv/sra_experiment-biosample.tsv is created 6.968102141983357 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-biosample.tsv is created 7.345188631878878 days ago (will be updated when >5 days) ## Update config/sra_experiment-biosample/config.yaml => output/tsv/sra_experiment-biosample.tsv -< 2024-01-05T20:25:14 sra_experiment-biosample +< 2024-01-13T04:45:33 sra_experiment-biosample togoid-config config/sra_experiment-biosample update # Success: output/tsv/sra_experiment-biosample.tsv is updated -> 2024-01-05T20:28:29 sra_experiment-biosample +> 2024-01-13T04:48:42 sra_experiment-biosample ### Update TSV for sra_experiment-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-sra_project.tsv is newer than config/sra_experiment-sra_project/config.yaml # File output/tsv/sra_experiment-sra_project.tsv has no timestamp file -# File output/tsv/sra_experiment-sra_project.tsv is created 6.968492451628055 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-sra_project.tsv is created 7.345470148018946 days ago (will be updated when >5 days) ## Update config/sra_experiment-sra_project/config.yaml => output/tsv/sra_experiment-sra_project.tsv -< 2024-01-05T20:28:29 sra_experiment-sra_project +< 2024-01-13T04:48:42 sra_experiment-sra_project togoid-config config/sra_experiment-sra_project update # Success: output/tsv/sra_experiment-sra_project.tsv is updated -> 2024-01-05T20:31:14 sra_experiment-sra_project +> 2024-01-13T04:51:24 sra_experiment-sra_project ### Update TSV for sra_experiment-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-sra_sample.tsv is newer than config/sra_experiment-sra_sample/config.yaml # File output/tsv/sra_experiment-sra_sample.tsv has no timestamp file -# File output/tsv/sra_experiment-sra_sample.tsv is created 6.968474744905522 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-sra_sample.tsv is created 7.345460847021794 days ago (will be updated when >5 days) ## Update config/sra_experiment-sra_sample/config.yaml => output/tsv/sra_experiment-sra_sample.tsv -< 2024-01-05T20:31:14 sra_experiment-sra_sample +< 2024-01-13T04:51:24 sra_experiment-sra_sample togoid-config config/sra_experiment-sra_sample update # Success: output/tsv/sra_experiment-sra_sample.tsv is updated -> 2024-01-05T20:33:56 sra_experiment-sra_sample +> 2024-01-13T04:54:01 sra_experiment-sra_sample ### Update TSV for sra_project-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_project-bioproject.tsv is newer than config/sra_project-bioproject/config.yaml # File output/tsv/sra_project-bioproject.tsv has no timestamp file -# File output/tsv/sra_project-bioproject.tsv is created 6.969662547807489 days ago (will be updated when >5 days) +# File output/tsv/sra_project-bioproject.tsv is created 7.3465848556093745 days ago (will be updated when >5 days) ## Update config/sra_project-bioproject/config.yaml => output/tsv/sra_project-bioproject.tsv -< 2024-01-05T20:33:56 sra_project-bioproject +< 2024-01-13T04:54:01 sra_project-bioproject togoid-config config/sra_project-bioproject update # Success: output/tsv/sra_project-bioproject.tsv is updated -> 2024-01-05T20:34:56 sra_project-bioproject +> 2024-01-13T04:55:01 sra_project-bioproject ### Update TSV for sra_run-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-bioproject.tsv is newer than config/sra_run-bioproject/config.yaml # File output/tsv/sra_run-bioproject.tsv has no timestamp file -# File output/tsv/sra_run-bioproject.tsv is created 6.967870223984328 days ago (will be updated when >5 days) +# File output/tsv/sra_run-bioproject.tsv is created 7.344727463922522 days ago (will be updated when >5 days) ## Update config/sra_run-bioproject/config.yaml => output/tsv/sra_run-bioproject.tsv -< 2024-01-05T20:34:56 sra_run-bioproject +< 2024-01-13T04:55:01 sra_run-bioproject togoid-config config/sra_run-bioproject update # Success: output/tsv/sra_run-bioproject.tsv is updated -> 2024-01-05T20:38:36 sra_run-bioproject +> 2024-01-13T04:58:38 sra_run-bioproject ### Update TSV for sra_run-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-biosample.tsv is newer than config/sra_run-biosample/config.yaml # File output/tsv/sra_run-biosample.tsv has no timestamp file -# File output/tsv/sra_run-biosample.tsv is created 6.968044057108275 days ago (will be updated when >5 days) +# File output/tsv/sra_run-biosample.tsv is created 7.344729877848959 days ago (will be updated when >5 days) ## Update config/sra_run-biosample/config.yaml => output/tsv/sra_run-biosample.tsv -< 2024-01-05T20:38:36 sra_run-biosample +< 2024-01-13T04:58:38 sra_run-biosample togoid-config config/sra_run-biosample update # Success: output/tsv/sra_run-biosample.tsv is updated -> 2024-01-05T20:42:13 sra_run-biosample +> 2024-01-13T05:02:16 sra_run-biosample ### Update TSV for sra_run-sra_experiment if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_experiment.tsv is newer than config/sra_run-sra_experiment/config.yaml # File output/tsv/sra_run-sra_experiment.tsv has no timestamp file -# File output/tsv/sra_run-sra_experiment.tsv is created 6.9687265073115165 days ago (will be updated when >5 days) +# File output/tsv/sra_run-sra_experiment.tsv is created 7.3452280685016325 days ago (will be updated when >5 days) ## Update config/sra_run-sra_experiment/config.yaml => output/tsv/sra_run-sra_experiment.tsv -< 2024-01-05T20:42:13 sra_run-sra_experiment +< 2024-01-13T05:02:16 sra_run-sra_experiment togoid-config config/sra_run-sra_experiment update # Success: output/tsv/sra_run-sra_experiment.tsv is updated -> 2024-01-05T20:45:08 sra_run-sra_experiment +> 2024-01-13T05:05:17 sra_run-sra_experiment ### Update TSV for sra_run-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_project.tsv is newer than config/sra_run-sra_project/config.yaml # File output/tsv/sra_run-sra_project.tsv has no timestamp file -# File output/tsv/sra_run-sra_project.tsv is created 6.968602482511863 days ago (will be updated when >5 days) +# File output/tsv/sra_run-sra_project.tsv is created 7.345231184891215 days ago (will be updated when >5 days) ## Update config/sra_run-sra_project/config.yaml => output/tsv/sra_run-sra_project.tsv -< 2024-01-05T20:45:08 sra_run-sra_project +< 2024-01-13T05:05:17 sra_run-sra_project togoid-config config/sra_run-sra_project update # Success: output/tsv/sra_run-sra_project.tsv is updated -> 2024-01-05T20:48:09 sra_run-sra_project +> 2024-01-13T05:08:26 sra_run-sra_project ### Update TSV for sra_run-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_sample.tsv is newer than config/sra_run-sra_sample/config.yaml # File output/tsv/sra_run-sra_sample.tsv has no timestamp file -# File output/tsv/sra_run-sra_sample.tsv is created 6.968590433350532 days ago (will be updated when >5 days) +# File output/tsv/sra_run-sra_sample.tsv is created 7.345314853343218 days ago (will be updated when >5 days) ## Update config/sra_run-sra_sample/config.yaml => output/tsv/sra_run-sra_sample.tsv -< 2024-01-05T20:48:09 sra_run-sra_sample +< 2024-01-13T05:08:26 sra_run-sra_sample togoid-config config/sra_run-sra_sample update # Success: output/tsv/sra_run-sra_sample.tsv is updated -> 2024-01-05T20:51:11 sra_run-sra_sample +> 2024-01-13T05:11:29 sra_run-sra_sample ### Update TSV for sra_sample-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_sample-biosample.tsv is newer than config/sra_sample-biosample/config.yaml # File output/tsv/sra_sample-biosample.tsv has no timestamp file -# File output/tsv/sra_sample-biosample.tsv is created 6.968532449794723 days ago (will be updated when >5 days) +# File output/tsv/sra_sample-biosample.tsv is created 7.345415520242477 days ago (will be updated when >5 days) ## Update config/sra_sample-biosample/config.yaml => output/tsv/sra_sample-biosample.tsv -< 2024-01-05T20:51:11 sra_sample-biosample +< 2024-01-13T05:11:29 sra_sample-biosample togoid-config config/sra_sample-biosample update # Success: output/tsv/sra_sample-biosample.tsv is updated -> 2024-01-05T20:54:06 sra_sample-biosample +> 2024-01-13T05:14:27 sra_sample-biosample ### Update TSV for swisslipids-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-chebi.tsv is newer than config/swisslipids-chebi/config.yaml # File output/tsv/swisslipids-chebi.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-chebi/config.yaml => output/tsv/swisslipids-chebi.tsv -< 2024-01-05T20:54:06 swisslipids-chebi +< 2024-01-13T05:14:27 swisslipids-chebi togoid-config config/swisslipids-chebi update # Success: output/tsv/swisslipids-chebi.tsv is updated -> 2024-01-05T20:54:20 swisslipids-chebi +> 2024-01-13T05:14:42 swisslipids-chebi ### Update TSV for swisslipids-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-hmdb.tsv is newer than config/swisslipids-hmdb/config.yaml # File output/tsv/swisslipids-hmdb.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-hmdb/config.yaml => output/tsv/swisslipids-hmdb.tsv -< 2024-01-05T20:54:20 swisslipids-hmdb +< 2024-01-13T05:14:42 swisslipids-hmdb togoid-config config/swisslipids-hmdb update # Success: output/tsv/swisslipids-hmdb.tsv is updated -> 2024-01-05T20:54:34 swisslipids-hmdb +> 2024-01-13T05:14:56 swisslipids-hmdb ### Update TSV for swisslipids-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-inchi_key.tsv is newer than config/swisslipids-inchi_key/config.yaml # File output/tsv/swisslipids-inchi_key.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-inchi_key/config.yaml => output/tsv/swisslipids-inchi_key.tsv -< 2024-01-05T20:54:34 swisslipids-inchi_key +< 2024-01-13T05:14:56 swisslipids-inchi_key togoid-config config/swisslipids-inchi_key update # Success: output/tsv/swisslipids-inchi_key.tsv is updated -> 2024-01-05T20:54:46 swisslipids-inchi_key +> 2024-01-13T05:15:08 swisslipids-inchi_key ### Update TSV for taxonomy-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/taxonomy-pubmed.tsv is newer than config/taxonomy-pubmed/config.yaml # File output/tsv/taxonomy-pubmed.tsv is older than input/taxonomy/download.lock ## Update config/taxonomy-pubmed/config.yaml => output/tsv/taxonomy-pubmed.tsv -< 2024-01-05T20:54:46 taxonomy-pubmed +< 2024-01-13T05:15:08 taxonomy-pubmed togoid-config config/taxonomy-pubmed update awk: cmd. line:1: warning: escape sequence `\|' treated as plain `|' # Success: output/tsv/taxonomy-pubmed.tsv is updated -> 2024-01-05T20:54:46 taxonomy-pubmed +> 2024-01-13T05:15:08 taxonomy-pubmed ### Update TSV for togovar-clinvar if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-clinvar.tsv is newer than config/togovar-clinvar/config.yaml # File output/tsv/togovar-clinvar.tsv has no timestamp file -# File output/tsv/togovar-clinvar.tsv is created 69.9946164294242 days ago (will be updated when >5 days) +# File output/tsv/togovar-clinvar.tsv is created 77.34209401443123 days ago (will be updated when >5 days) ## Update config/togovar-clinvar/config.yaml => output/tsv/togovar-clinvar.tsv -< 2024-01-05T20:54:46 togovar-clinvar +< 2024-01-13T05:15:08 togovar-clinvar togoid-config config/togovar-clinvar update # Error: output/tsv/togovar-clinvar.tsv new file size per old 0 / 13681182 = 0.0 < 0.5 # Error: Failed to create output/tsv/togovar-clinvar.tsv or created file was empty # Failure: output/tsv/togovar-clinvar.tsv is not updated -> 2024-01-05T20:55:17 togovar-clinvar +> 2024-01-13T05:15:40 togovar-clinvar ### Update TSV for togovar-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-dbsnp.tsv is newer than config/togovar-dbsnp/config.yaml # File output/tsv/togovar-dbsnp.tsv has no timestamp file -# File output/tsv/togovar-dbsnp.tsv is created 6.970064811777303 days ago (will be updated when >5 days) +# File output/tsv/togovar-dbsnp.tsv is created 7.347086619433379 days ago (will be updated when >5 days) ## Update config/togovar-dbsnp/config.yaml => output/tsv/togovar-dbsnp.tsv -< 2024-01-05T20:55:17 togovar-dbsnp +< 2024-01-13T05:15:40 togovar-dbsnp togoid-config config/togovar-dbsnp update # Success: output/tsv/togovar-dbsnp.tsv is updated -> 2024-01-05T20:55:52 togovar-dbsnp +> 2024-01-13T05:16:14 togovar-dbsnp ### Update TSV for togovar-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ensembl_gene.tsv is newer than config/togovar-ensembl_gene/config.yaml # File output/tsv/togovar-ensembl_gene.tsv has no timestamp file -# File output/tsv/togovar-ensembl_gene.tsv is created 6.969922858387639 days ago (will be updated when >5 days) +# File output/tsv/togovar-ensembl_gene.tsv is created 7.347038676155892 days ago (will be updated when >5 days) ## Update config/togovar-ensembl_gene/config.yaml => output/tsv/togovar-ensembl_gene.tsv -< 2024-01-05T20:55:52 togovar-ensembl_gene +< 2024-01-13T05:16:14 togovar-ensembl_gene togoid-config config/togovar-ensembl_gene update # Success: output/tsv/togovar-ensembl_gene.tsv is updated -> 2024-01-05T20:56:30 togovar-ensembl_gene +> 2024-01-13T05:16:53 togovar-ensembl_gene ### Update TSV for togovar-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ensembl_transcript.tsv is newer than config/togovar-ensembl_transcript/config.yaml # File output/tsv/togovar-ensembl_transcript.tsv has no timestamp file -# File output/tsv/togovar-ensembl_transcript.tsv is created 6.9681600422771295 days ago (will be updated when >5 days) +# File output/tsv/togovar-ensembl_transcript.tsv is created 7.345829531629653 days ago (will be updated when >5 days) ## Update config/togovar-ensembl_transcript/config.yaml => output/tsv/togovar-ensembl_transcript.tsv -< 2024-01-05T20:56:30 togovar-ensembl_transcript +< 2024-01-13T05:16:53 togovar-ensembl_transcript togoid-config config/togovar-ensembl_transcript update # Success: output/tsv/togovar-ensembl_transcript.tsv is updated -> 2024-01-05T20:58:53 togovar-ensembl_transcript +> 2024-01-13T05:19:27 togovar-ensembl_transcript ### Update TSV for togovar-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-hgnc.tsv is newer than config/togovar-hgnc/config.yaml # File output/tsv/togovar-hgnc.tsv has no timestamp file -# File output/tsv/togovar-hgnc.tsv is created 6.969511558845254 days ago (will be updated when >5 days) +# File output/tsv/togovar-hgnc.tsv is created 7.347339123691921 days ago (will be updated when >5 days) ## Update config/togovar-hgnc/config.yaml => output/tsv/togovar-hgnc.tsv -< 2024-01-05T20:58:53 togovar-hgnc +< 2024-01-13T05:19:27 togovar-hgnc togoid-config config/togovar-hgnc update # Success: output/tsv/togovar-hgnc.tsv is updated -> 2024-01-05T20:59:16 togovar-hgnc +> 2024-01-13T05:19:51 togovar-hgnc ### Update TSV for togovar-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ncbigene.tsv is newer than config/togovar-ncbigene/config.yaml # File output/tsv/togovar-ncbigene.tsv has no timestamp file -# File output/tsv/togovar-ncbigene.tsv is created 6.969466693254155 days ago (will be updated when >5 days) +# File output/tsv/togovar-ncbigene.tsv is created 7.347359071588669 days ago (will be updated when >5 days) ## Update config/togovar-ncbigene/config.yaml => output/tsv/togovar-ncbigene.tsv -< 2024-01-05T20:59:16 togovar-ncbigene +< 2024-01-13T05:19:51 togovar-ncbigene togoid-config config/togovar-ncbigene update # Success: output/tsv/togovar-ncbigene.tsv is updated -> 2024-01-05T20:59:40 togovar-ncbigene +> 2024-01-13T05:20:15 togovar-ncbigene ### Update TSV for togovar-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-pubmed.tsv is newer than config/togovar-pubmed/config.yaml # File output/tsv/togovar-pubmed.tsv has no timestamp file -# File output/tsv/togovar-pubmed.tsv is created 6.969725887444989 days ago (will be updated when >5 days) +# File output/tsv/togovar-pubmed.tsv is created 7.3476194682271645 days ago (will be updated when >5 days) ## Update config/togovar-pubmed/config.yaml => output/tsv/togovar-pubmed.tsv -< 2024-01-05T20:59:40 togovar-pubmed +< 2024-01-13T05:20:15 togovar-pubmed togoid-config config/togovar-pubmed update # Success: output/tsv/togovar-pubmed.tsv is updated -> 2024-01-05T20:59:41 togovar-pubmed +> 2024-01-13T05:20:16 togovar-pubmed ### Update TSV for togovar-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-refseq_rna.tsv is newer than config/togovar-refseq_rna/config.yaml # File output/tsv/togovar-refseq_rna.tsv has no timestamp file -# File output/tsv/togovar-refseq_rna.tsv is created 6.968572589669571 days ago (will be updated when >5 days) +# File output/tsv/togovar-refseq_rna.tsv is created 7.346664608371528 days ago (will be updated when >5 days) ## Update config/togovar-refseq_rna/config.yaml => output/tsv/togovar-refseq_rna.tsv -< 2024-01-05T20:59:41 togovar-refseq_rna +< 2024-01-13T05:20:16 togovar-refseq_rna togoid-config config/togovar-refseq_rna update # Success: output/tsv/togovar-refseq_rna.tsv is updated -> 2024-01-05T21:01:04 togovar-refseq_rna +> 2024-01-13T05:21:39 togovar-refseq_rna ### Update TSV for uberon-ncit_tissue if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uberon-ncit_tissue.tsv is newer than config/uberon-ncit_tissue/config.yaml # File output/tsv/uberon-ncit_tissue.tsv has no timestamp file -# File output/tsv/uberon-ncit_tissue.tsv is created 6.969512598133403 days ago (will be updated when >5 days) +# File output/tsv/uberon-ncit_tissue.tsv is created 7.3476114165774655 days ago (will be updated when >5 days) ## Update config/uberon-ncit_tissue/config.yaml => output/tsv/uberon-ncit_tissue.tsv -< 2024-01-05T21:01:04 uberon-ncit_tissue +< 2024-01-13T05:21:39 uberon-ncit_tissue togoid-config config/uberon-ncit_tissue update # Success: output/tsv/uberon-ncit_tissue.tsv is updated -> 2024-01-05T21:01:06 uberon-ncit_tissue +> 2024-01-13T05:21:42 uberon-ncit_tissue ### Update TSV for uniprot-chembl_target if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false # File output/tsv/uniprot-chembl_target.tsv is newer than config/uniprot-chembl_target/config.yaml # File output/tsv/uniprot-chembl_target.tsv is newer than input/uniprot/download.lock @@ -2080,95 +2569,95 @@ togoid-config config/uberon-ncit_tissue update ### Update TSV for uniprot_reference_proteome-assembly_insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is newer than config/uniprot_reference_proteome-assembly_insdc/config.yaml # File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is created 6.969526723217373 days ago (will be updated when >5 days) +# File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is created 7.347635999649965 days ago (will be updated when >5 days) ## Update config/uniprot_reference_proteome-assembly_insdc/config.yaml => output/tsv/uniprot_reference_proteome-assembly_insdc.tsv -< 2024-01-05T21:01:06 uniprot_reference_proteome-assembly_insdc +< 2024-01-13T05:21:42 uniprot_reference_proteome-assembly_insdc togoid-config config/uniprot_reference_proteome-assembly_insdc update # Success: output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is updated -> 2024-01-05T21:01:06 uniprot_reference_proteome-assembly_insdc +> 2024-01-13T05:21:43 uniprot_reference_proteome-assembly_insdc ### Update TSV for uniprot_reference_proteome-assembly_refseq if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is newer than config/uniprot_reference_proteome-assembly_refseq/config.yaml # File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is created 6.969528065235313 days ago (will be updated when >5 days) +# File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is created 7.347639712457489 days ago (will be updated when >5 days) ## Update config/uniprot_reference_proteome-assembly_refseq/config.yaml => output/tsv/uniprot_reference_proteome-assembly_refseq.tsv -< 2024-01-05T21:01:06 uniprot_reference_proteome-assembly_refseq +< 2024-01-13T05:21:43 uniprot_reference_proteome-assembly_refseq togoid-config config/uniprot_reference_proteome-assembly_refseq update # Success: output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is updated -> 2024-01-05T21:01:07 uniprot_reference_proteome-assembly_refseq +> 2024-01-13T05:21:44 uniprot_reference_proteome-assembly_refseq ### Update TSV for uniprot_reference_proteome-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-taxonomy.tsv is newer than config/uniprot_reference_proteome-taxonomy/config.yaml # File output/tsv/uniprot_reference_proteome-taxonomy.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-taxonomy.tsv is created 6.969526559143576 days ago (will be updated when >5 days) +# File output/tsv/uniprot_reference_proteome-taxonomy.tsv is created 7.34764179642338 days ago (will be updated when >5 days) ## Update config/uniprot_reference_proteome-taxonomy/config.yaml => output/tsv/uniprot_reference_proteome-taxonomy.tsv -< 2024-01-05T21:01:07 uniprot_reference_proteome-taxonomy +< 2024-01-13T05:21:44 uniprot_reference_proteome-taxonomy togoid-config config/uniprot_reference_proteome-taxonomy update # Success: output/tsv/uniprot_reference_proteome-taxonomy.tsv is updated -> 2024-01-05T21:01:07 uniprot_reference_proteome-taxonomy +> 2024-01-13T05:21:44 uniprot_reference_proteome-taxonomy ### Update TSV for wikipathways-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-chebi.tsv is newer than config/wikipathways-chebi/config.yaml # File output/tsv/wikipathways-chebi.tsv has no timestamp file -# File output/tsv/wikipathways-chebi.tsv is created 6.969499484162928 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-chebi.tsv is created 7.347615143708437 days ago (will be updated when >5 days) ## Update config/wikipathways-chebi/config.yaml => output/tsv/wikipathways-chebi.tsv -< 2024-01-05T21:01:07 wikipathways-chebi +< 2024-01-13T05:21:44 wikipathways-chebi togoid-config config/wikipathways-chebi update # Success: output/tsv/wikipathways-chebi.tsv is updated -> 2024-01-05T21:01:10 wikipathways-chebi +> 2024-01-13T05:21:47 wikipathways-chebi ### Update TSV for wikipathways-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-doid.tsv is newer than config/wikipathways-doid/config.yaml # File output/tsv/wikipathways-doid.tsv has no timestamp file -# File output/tsv/wikipathways-doid.tsv is created 6.96951253812081 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-doid.tsv is created 7.347629730456284 days ago (will be updated when >5 days) ## Update config/wikipathways-doid/config.yaml => output/tsv/wikipathways-doid.tsv -< 2024-01-05T21:01:10 wikipathways-doid +< 2024-01-13T05:21:47 wikipathways-doid togoid-config config/wikipathways-doid update # Success: output/tsv/wikipathways-doid.tsv is updated -> 2024-01-05T21:01:12 wikipathways-doid +> 2024-01-13T05:21:49 wikipathways-doid ### Update TSV for wikipathways-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-hmdb.tsv is newer than config/wikipathways-hmdb/config.yaml # File output/tsv/wikipathways-hmdb.tsv has no timestamp file -# File output/tsv/wikipathways-hmdb.tsv is created 6.969508129368831 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-hmdb.tsv is created 7.347625516604502 days ago (will be updated when >5 days) ## Update config/wikipathways-hmdb/config.yaml => output/tsv/wikipathways-hmdb.tsv -< 2024-01-05T21:01:12 wikipathways-hmdb +< 2024-01-13T05:21:49 wikipathways-hmdb togoid-config config/wikipathways-hmdb update # Success: output/tsv/wikipathways-hmdb.tsv is updated -> 2024-01-05T21:01:14 wikipathways-hmdb +> 2024-01-13T05:21:52 wikipathways-hmdb ### Update TSV for wikipathways-lipidmaps if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-lipidmaps.tsv is newer than config/wikipathways-lipidmaps/config.yaml # File output/tsv/wikipathways-lipidmaps.tsv has no timestamp file -# File output/tsv/wikipathways-lipidmaps.tsv is created 6.969512849069167 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-lipidmaps.tsv is created 7.347631010869456 days ago (will be updated when >5 days) ## Update config/wikipathways-lipidmaps/config.yaml => output/tsv/wikipathways-lipidmaps.tsv -< 2024-01-05T21:01:14 wikipathways-lipidmaps +< 2024-01-13T05:21:52 wikipathways-lipidmaps togoid-config config/wikipathways-lipidmaps update # Success: output/tsv/wikipathways-lipidmaps.tsv is updated -> 2024-01-05T21:01:16 wikipathways-lipidmaps +> 2024-01-13T05:21:53 wikipathways-lipidmaps ### Update TSV for wikipathways-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-ncbigene.tsv is newer than config/wikipathways-ncbigene/config.yaml # File output/tsv/wikipathways-ncbigene.tsv has no timestamp file -# File output/tsv/wikipathways-ncbigene.tsv is created 6.969482853135278 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-ncbigene.tsv is created 7.347602273052188 days ago (will be updated when >5 days) ## Update config/wikipathways-ncbigene/config.yaml => output/tsv/wikipathways-ncbigene.tsv -< 2024-01-05T21:01:16 wikipathways-ncbigene +< 2024-01-13T05:21:53 wikipathways-ncbigene togoid-config config/wikipathways-ncbigene update # Success: output/tsv/wikipathways-ncbigene.tsv is updated -> 2024-01-05T21:01:21 wikipathways-ncbigene +> 2024-01-13T05:21:58 wikipathways-ncbigene ### Update TSV for wikipathways-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-uniprot.tsv is newer than config/wikipathways-uniprot/config.yaml # File output/tsv/wikipathways-uniprot.tsv has no timestamp file -# File output/tsv/wikipathways-uniprot.tsv is created 6.969475265925752 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-uniprot.tsv is created 7.34760283871331 days ago (will be updated when >5 days) ## Update config/wikipathways-uniprot/config.yaml => output/tsv/wikipathways-uniprot.tsv -< 2024-01-05T21:01:21 wikipathways-uniprot +< 2024-01-13T05:21:58 wikipathways-uniprot togoid-config config/wikipathways-uniprot update # Success: output/tsv/wikipathways-uniprot.tsv is updated -> 2024-01-05T21:01:25 wikipathways-uniprot +> 2024-01-13T05:22:03 wikipathways-uniprot Rule for TSV (output/tsv/bioproject-biosample.tsv) ------------------------------ Investigating output/tsv/bioproject-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 17:52:16 +0900 +timestamp: 2024-01-12 17:50:18 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:bioproject (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:bioproject (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/bioproject-geo_series.tsv) @@ -2176,12 +2665,12 @@ Rule for TSV (output/tsv/bioproject-geo_series.tsv) Investigating output/tsv/bioproject-geo_series.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 17:52:18 +0900 +timestamp: 2024-01-12 17:50:20 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:bioproject (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:bioproject (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/bioproject-pubmed.tsv) @@ -2189,12 +2678,12 @@ Rule for TSV (output/tsv/bioproject-pubmed.tsv) Investigating output/tsv/bioproject-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 17:52:19 +0900 +timestamp: 2024-01-12 17:50:21 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:bioproject (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:bioproject (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/bioproject_umbrella-bioproject.tsv) @@ -2202,12 +2691,12 @@ Rule for TSV (output/tsv/bioproject_umbrella-bioproject.tsv) Investigating output/tsv/bioproject_umbrella-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 17:52:19 +0900 +timestamp: 2024-01-12 17:50:21 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:bioproject (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:bioproject (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/cellosaurus-ncit_disease.tsv) @@ -2219,8 +2708,8 @@ timestamp: 2023-10-06 17:40:53 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:cellosaurus (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:cellosaurus (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/cellosaurus-orphanet_phenotype.tsv) @@ -2232,8 +2721,8 @@ timestamp: 2023-10-06 17:40:56 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:cellosaurus (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:cellosaurus (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/chembl_target-ensembl_gene.tsv) @@ -2257,8 +2746,8 @@ timestamp: 2023-07-28 17:55:29 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:cog (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:cog (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/cog-refseq_protein.tsv) @@ -2270,8 +2759,8 @@ timestamp: 2023-07-28 17:55:40 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:cog (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:cog (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ensembl_gene-affy_probeset.tsv) @@ -2279,12 +2768,12 @@ Rule for TSV (output/tsv/ensembl_gene-affy_probeset.tsv) Investigating output/tsv/ensembl_gene-affy_probeset.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 18:10:06 +0900 +timestamp: 2024-01-12 18:07:20 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ensembl (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ensembl (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ensembl_gene-ensembl_protein.tsv) @@ -2292,12 +2781,12 @@ Rule for TSV (output/tsv/ensembl_gene-ensembl_protein.tsv) Investigating output/tsv/ensembl_gene-ensembl_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 18:11:57 +0900 +timestamp: 2024-01-12 18:19:10 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ensembl (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ensembl (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ensembl_gene-ensembl_transcript.tsv) @@ -2305,12 +2794,12 @@ Rule for TSV (output/tsv/ensembl_gene-ensembl_transcript.tsv) Investigating output/tsv/ensembl_gene-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 18:13:58 +0900 +timestamp: 2024-01-12 18:21:04 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ensembl (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ensembl (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ensembl_gene-hgnc.tsv) @@ -2318,12 +2807,12 @@ Rule for TSV (output/tsv/ensembl_gene-hgnc.tsv) Investigating output/tsv/ensembl_gene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 18:13:58 +0900 +timestamp: 2024-01-12 18:21:05 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ensembl (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ensembl (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ensembl_gene-ncbigene.tsv) @@ -2331,12 +2820,12 @@ Rule for TSV (output/tsv/ensembl_gene-ncbigene.tsv) Investigating output/tsv/ensembl_gene-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 18:15:20 +0900 +timestamp: 2024-01-12 18:28:25 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ensembl (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ensembl (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ensembl_gene-uniprot.tsv) @@ -2344,12 +2833,12 @@ Rule for TSV (output/tsv/ensembl_gene-uniprot.tsv) Investigating output/tsv/ensembl_gene-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 18:16:45 +0900 +timestamp: 2024-01-12 18:40:52 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ensembl (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ensembl (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ensembl_protein-ensembl_transcript.tsv) @@ -2357,12 +2846,12 @@ Rule for TSV (output/tsv/ensembl_protein-ensembl_transcript.tsv) Investigating output/tsv/ensembl_protein-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 18:18:34 +0900 +timestamp: 2024-01-12 18:52:40 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ensembl (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ensembl (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ensembl_transcript-affy_probeset.tsv) @@ -2370,12 +2859,12 @@ Rule for TSV (output/tsv/ensembl_transcript-affy_probeset.tsv) Investigating output/tsv/ensembl_transcript-affy_probeset.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 18:19:41 +0900 +timestamp: 2024-01-12 18:53:16 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ensembl (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ensembl (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ensembl_transcript-go.tsv) @@ -2383,12 +2872,12 @@ Rule for TSV (output/tsv/ensembl_transcript-go.tsv) Investigating output/tsv/ensembl_transcript-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 18:23:25 +0900 +timestamp: 2024-01-13 02:27:47 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ensembl (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ensembl (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ensembl_transcript-hgnc.tsv) @@ -2396,12 +2885,12 @@ Rule for TSV (output/tsv/ensembl_transcript-hgnc.tsv) Investigating output/tsv/ensembl_transcript-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 18:23:26 +0900 +timestamp: 2024-01-13 02:27:48 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ensembl (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ensembl (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ensembl_transcript-refseq_rna.tsv) @@ -2409,12 +2898,12 @@ Rule for TSV (output/tsv/ensembl_transcript-refseq_rna.tsv) Investigating output/tsv/ensembl_transcript-refseq_rna.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 18:25:21 +0900 +timestamp: 2024-01-13 02:45:45 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ensembl (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ensembl (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/hmdb-chebi.tsv) @@ -2426,8 +2915,8 @@ timestamp: 2023-07-03 13:03:28 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:hmdb (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:hmdb (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/hmdb-inchi_key.tsv) @@ -2439,8 +2928,8 @@ timestamp: 2023-07-03 13:03:51 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:hmdb (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:hmdb (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/hmdb-pdb_ccd.tsv) @@ -2452,8 +2941,8 @@ timestamp: 2023-07-03 13:06:37 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:hmdb (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:hmdb (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/hmdb-pubchem_compound.tsv) @@ -2465,8 +2954,8 @@ timestamp: 2023-07-03 13:06:27 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:hmdb (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:hmdb (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/homologene-ncbigene.tsv) @@ -2478,8 +2967,8 @@ timestamp: 2023-06-02 19:58:16 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:homologene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:homologene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/hp_phenotype-omim_phenotype.tsv) @@ -2487,12 +2976,12 @@ Rule for TSV (output/tsv/hp_phenotype-omim_phenotype.tsv) Investigating output/tsv/hp_phenotype-omim_phenotype.tsv class: Rake::FileTask task needed: true -timestamp: 2023-10-16 09:24:24 +0900 +timestamp: 2024-01-13 02:46:08 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:hp_phenotype (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:hp_phenotype (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/hp_phenotype-orphanet_phenotype.tsv) @@ -2500,12 +2989,12 @@ Rule for TSV (output/tsv/hp_phenotype-orphanet_phenotype.tsv) Investigating output/tsv/hp_phenotype-orphanet_phenotype.tsv class: Rake::FileTask task needed: true -timestamp: 2023-10-13 18:16:38 +0900 +timestamp: 2024-01-13 02:46:08 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:hp_phenotype (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:hp_phenotype (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/interpro-go.tsv) @@ -2517,8 +3006,8 @@ timestamp: 2023-11-12 10:20:00 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:interpro (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:interpro (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/interpro-pdb.tsv) @@ -2530,8 +3019,8 @@ timestamp: 2023-11-12 10:20:03 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:interpro (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:interpro (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/interpro-pfam.tsv) @@ -2543,8 +3032,8 @@ timestamp: 2023-11-12 10:20:04 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:interpro (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:interpro (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/interpro-prosite.tsv) @@ -2556,8 +3045,8 @@ timestamp: 2023-11-12 10:20:06 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:interpro (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:interpro (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/interpro-pubmed.tsv) @@ -2569,8 +3058,8 @@ timestamp: 2023-11-12 10:20:08 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:interpro (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:interpro (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/interpro-reactome_pathway.tsv) @@ -2582,8 +3071,8 @@ timestamp: 2023-11-12 10:20:10 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:interpro (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:interpro (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/interpro-smart.tsv) @@ -2595,8 +3084,8 @@ timestamp: 2023-11-12 10:20:11 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:interpro (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:interpro (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/interpro-uniprot.tsv) @@ -2608,8 +3097,8 @@ timestamp: 2023-11-12 14:10:18 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:interpro (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:interpro (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/mgi_gene-ensembl_gene.tsv) @@ -2617,12 +3106,12 @@ Rule for TSV (output/tsv/mgi_gene-ensembl_gene.tsv) Investigating output/tsv/mgi_gene-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:07:22 +0900 +timestamp: 2024-01-13 03:28:17 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:mgi_gene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:mgi_gene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/mgi_gene-hgnc.tsv) @@ -2630,12 +3119,12 @@ Rule for TSV (output/tsv/mgi_gene-hgnc.tsv) Investigating output/tsv/mgi_gene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:07:23 +0900 +timestamp: 2024-01-13 03:28:18 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:mgi_gene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:mgi_gene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/mgi_gene-mgi_allele.tsv) @@ -2643,12 +3132,12 @@ Rule for TSV (output/tsv/mgi_gene-mgi_allele.tsv) Investigating output/tsv/mgi_gene-mgi_allele.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:07:24 +0900 +timestamp: 2024-01-13 03:28:19 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:mgi_gene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:mgi_gene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/mgi_gene-ncbigene.tsv) @@ -2656,12 +3145,12 @@ Rule for TSV (output/tsv/mgi_gene-ncbigene.tsv) Investigating output/tsv/mgi_gene-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:07:24 +0900 +timestamp: 2024-01-13 03:28:19 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:mgi_gene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:mgi_gene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/mgi_gene-uniprot.tsv) @@ -2669,12 +3158,12 @@ Rule for TSV (output/tsv/mgi_gene-uniprot.tsv) Investigating output/tsv/mgi_gene-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:07:25 +0900 +timestamp: 2024-01-13 03:28:20 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:mgi_gene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:mgi_gene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/mgi_genotype-doid.tsv) @@ -2682,12 +3171,12 @@ Rule for TSV (output/tsv/mgi_genotype-doid.tsv) Investigating output/tsv/mgi_genotype-doid.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:07:28 +0900 +timestamp: 2024-01-13 03:28:22 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:mgi_genotype (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:mgi_genotype (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/mgi_genotype-mgi_allele.tsv) @@ -2695,12 +3184,12 @@ Rule for TSV (output/tsv/mgi_genotype-mgi_allele.tsv) Investigating output/tsv/mgi_genotype-mgi_allele.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:07:29 +0900 +timestamp: 2024-01-13 03:28:23 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:mgi_genotype (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:mgi_genotype (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/mgi_genotype-mp.tsv) @@ -2708,12 +3197,12 @@ Rule for TSV (output/tsv/mgi_genotype-mp.tsv) Investigating output/tsv/mgi_genotype-mp.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:07:31 +0900 +timestamp: 2024-01-13 03:28:26 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:mgi_genotype (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:mgi_genotype (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-ensembl_gene.tsv) @@ -2721,12 +3210,12 @@ Rule for TSV (output/tsv/ncbigene-ensembl_gene.tsv) Investigating output/tsv/ncbigene-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:08:06 +0900 +timestamp: 2024-01-13 03:28:56 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-ensembl_protein.tsv) @@ -2734,12 +3223,12 @@ Rule for TSV (output/tsv/ncbigene-ensembl_protein.tsv) Investigating output/tsv/ncbigene-ensembl_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:09:01 +0900 +timestamp: 2024-01-13 03:29:52 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-ensembl_transcript.tsv) @@ -2747,12 +3236,12 @@ Rule for TSV (output/tsv/ncbigene-ensembl_transcript.tsv) Investigating output/tsv/ncbigene-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:09:51 +0900 +timestamp: 2024-01-13 03:30:42 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-flybase_gene.tsv) @@ -2760,12 +3249,12 @@ Rule for TSV (output/tsv/ncbigene-flybase_gene.tsv) Investigating output/tsv/ncbigene-flybase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:11:01 +0900 +timestamp: 2024-01-13 03:31:51 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-go.tsv) @@ -2773,12 +3262,12 @@ Rule for TSV (output/tsv/ncbigene-go.tsv) Investigating output/tsv/ncbigene-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:15:06 +0900 +timestamp: 2024-01-13 03:36:04 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-hgnc.tsv) @@ -2786,12 +3275,12 @@ Rule for TSV (output/tsv/ncbigene-hgnc.tsv) Investigating output/tsv/ncbigene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:15:07 +0900 +timestamp: 2024-01-13 03:36:05 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-mgi_gene.tsv) @@ -2799,12 +3288,12 @@ Rule for TSV (output/tsv/ncbigene-mgi_gene.tsv) Investigating output/tsv/ncbigene-mgi_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:16:14 +0900 +timestamp: 2024-01-13 03:37:08 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-mirbase.tsv) @@ -2812,12 +3301,12 @@ Rule for TSV (output/tsv/ncbigene-mirbase.tsv) Investigating output/tsv/ncbigene-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:17:46 +0900 +timestamp: 2024-01-13 03:38:39 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-omim_gene.tsv) @@ -2825,12 +3314,12 @@ Rule for TSV (output/tsv/ncbigene-omim_gene.tsv) Investigating output/tsv/ncbigene-omim_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:17:47 +0900 +timestamp: 2024-01-13 03:38:40 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-refseq_genomic.tsv) @@ -2838,12 +3327,12 @@ Rule for TSV (output/tsv/ncbigene-refseq_genomic.tsv) Investigating output/tsv/ncbigene-refseq_genomic.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:21:28 +0900 +timestamp: 2024-01-13 03:42:16 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-refseq_protein.tsv) @@ -2851,12 +3340,12 @@ Rule for TSV (output/tsv/ncbigene-refseq_protein.tsv) Investigating output/tsv/ncbigene-refseq_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:25:34 +0900 +timestamp: 2024-01-13 03:46:21 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-refseq_rna.tsv) @@ -2864,12 +3353,12 @@ Rule for TSV (output/tsv/ncbigene-refseq_rna.tsv) Investigating output/tsv/ncbigene-refseq_rna.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:29:02 +0900 +timestamp: 2024-01-13 03:49:56 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-rgd.tsv) @@ -2877,12 +3366,12 @@ Rule for TSV (output/tsv/ncbigene-rgd.tsv) Investigating output/tsv/ncbigene-rgd.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:29:58 +0900 +timestamp: 2024-01-13 03:50:52 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-sgd.tsv) @@ -2890,12 +3379,12 @@ Rule for TSV (output/tsv/ncbigene-sgd.tsv) Investigating output/tsv/ncbigene-sgd.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:31:04 +0900 +timestamp: 2024-01-13 03:51:57 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-tair.tsv) @@ -2903,12 +3392,12 @@ Rule for TSV (output/tsv/ncbigene-tair.tsv) Investigating output/tsv/ncbigene-tair.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:32:08 +0900 +timestamp: 2024-01-13 03:53:02 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-taxonomy.tsv) @@ -2916,12 +3405,12 @@ Rule for TSV (output/tsv/ncbigene-taxonomy.tsv) Investigating output/tsv/ncbigene-taxonomy.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:32:48 +0900 +timestamp: 2024-01-13 03:53:41 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-vgnc.tsv) @@ -2929,12 +3418,12 @@ Rule for TSV (output/tsv/ncbigene-vgnc.tsv) Investigating output/tsv/ncbigene-vgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:33:54 +0900 +timestamp: 2024-01-13 03:54:46 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-wormbase_gene.tsv) @@ -2942,12 +3431,12 @@ Rule for TSV (output/tsv/ncbigene-wormbase_gene.tsv) Investigating output/tsv/ncbigene-wormbase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:34:59 +0900 +timestamp: 2024-01-13 03:55:53 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-xenbase_gene.tsv) @@ -2955,12 +3444,12 @@ Rule for TSV (output/tsv/ncbigene-xenbase_gene.tsv) Investigating output/tsv/ncbigene-xenbase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:36:04 +0900 +timestamp: 2024-01-13 03:56:58 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/ncbigene-zfin_gene.tsv) @@ -2968,12 +3457,12 @@ Rule for TSV (output/tsv/ncbigene-zfin_gene.tsv) Investigating output/tsv/ncbigene-zfin_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:37:09 +0900 +timestamp: 2024-01-13 03:58:03 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:ncbigene (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:ncbigene (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/oma_protein-ensembl_gene.tsv) @@ -2985,8 +3474,8 @@ timestamp: 2023-10-13 19:34:15 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:oma_protein (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:oma_protein (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/oma_protein-ensembl_transcript.tsv) @@ -2998,8 +3487,8 @@ timestamp: 2023-10-13 19:43:07 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:oma_protein (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:oma_protein (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/oma_protein-ncbigene.tsv) @@ -3011,8 +3500,8 @@ timestamp: 2023-10-20 20:12:58 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:oma_protein (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:oma_protein (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/oma_protein-uniprot.tsv) @@ -3024,8 +3513,8 @@ timestamp: 2023-10-13 19:43:31 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:oma_protein (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:oma_protein (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/prosite-prosite_prorule.tsv) @@ -3037,8 +3526,8 @@ timestamp: 2023-11-18 02:00:53 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:prosite (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:prosite (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/pubchem_compound-atc.tsv) @@ -3058,12 +3547,12 @@ Rule for TSV (output/tsv/reactome_pathway-chebi.tsv) Investigating output/tsv/reactome_pathway-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:45:13 +0900 +timestamp: 2024-01-13 04:05:37 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:reactome (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:reactome (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/reactome_pathway-go.tsv) @@ -3071,12 +3560,12 @@ Rule for TSV (output/tsv/reactome_pathway-go.tsv) Investigating output/tsv/reactome_pathway-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:45:14 +0900 +timestamp: 2024-01-13 04:05:37 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:reactome (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:reactome (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/reactome_pathway-iuphar_ligand.tsv) @@ -3084,12 +3573,12 @@ Rule for TSV (output/tsv/reactome_pathway-iuphar_ligand.tsv) Investigating output/tsv/reactome_pathway-iuphar_ligand.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:45:14 +0900 +timestamp: 2024-01-13 04:05:38 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:reactome (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:reactome (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/reactome_pathway-mirbase.tsv) @@ -3097,12 +3586,12 @@ Rule for TSV (output/tsv/reactome_pathway-mirbase.tsv) Investigating output/tsv/reactome_pathway-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:45:14 +0900 +timestamp: 2024-01-13 04:05:38 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:reactome (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:reactome (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/reactome_pathway-reactome_reaction.tsv) @@ -3110,12 +3599,12 @@ Rule for TSV (output/tsv/reactome_pathway-reactome_reaction.tsv) Investigating output/tsv/reactome_pathway-reactome_reaction.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:45:16 +0900 +timestamp: 2024-01-13 04:05:39 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:reactome (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:reactome (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/reactome_pathway-uniprot.tsv) @@ -3123,12 +3612,12 @@ Rule for TSV (output/tsv/reactome_pathway-uniprot.tsv) Investigating output/tsv/reactome_pathway-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:45:17 +0900 +timestamp: 2024-01-13 04:05:40 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:reactome (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:reactome (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/reactome_reaction-chebi.tsv) @@ -3136,12 +3625,12 @@ Rule for TSV (output/tsv/reactome_reaction-chebi.tsv) Investigating output/tsv/reactome_reaction-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:45:18 +0900 +timestamp: 2024-01-13 04:05:41 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:reactome (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:reactome (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/reactome_reaction-go.tsv) @@ -3149,12 +3638,12 @@ Rule for TSV (output/tsv/reactome_reaction-go.tsv) Investigating output/tsv/reactome_reaction-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:45:18 +0900 +timestamp: 2024-01-13 04:05:41 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:reactome (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:reactome (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/reactome_reaction-iuphar_ligand.tsv) @@ -3162,12 +3651,12 @@ Rule for TSV (output/tsv/reactome_reaction-iuphar_ligand.tsv) Investigating output/tsv/reactome_reaction-iuphar_ligand.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:45:18 +0900 +timestamp: 2024-01-13 04:05:42 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:reactome (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:reactome (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/reactome_reaction-mirbase.tsv) @@ -3175,12 +3664,12 @@ Rule for TSV (output/tsv/reactome_reaction-mirbase.tsv) Investigating output/tsv/reactome_reaction-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:45:19 +0900 +timestamp: 2024-01-13 04:05:42 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:reactome (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:reactome (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/reactome_reaction-uniprot.tsv) @@ -3188,12 +3677,12 @@ Rule for TSV (output/tsv/reactome_reaction-uniprot.tsv) Investigating output/tsv/reactome_reaction-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:45:20 +0900 +timestamp: 2024-01-13 04:05:43 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:reactome (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:reactome (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/refseq_protein-uniprot.tsv) @@ -3201,12 +3690,12 @@ Rule for TSV (output/tsv/refseq_protein-uniprot.tsv) Investigating output/tsv/refseq_protein-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:52:10 +0900 +timestamp: 2024-01-13 04:12:24 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:refseq_protein (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:refseq_protein (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/refseq_rna-dbsnp.tsv) @@ -3218,8 +3707,8 @@ timestamp: 2023-11-18 02:36:06 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:refseq_rna (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:refseq_rna (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/refseq_rna-hgnc.tsv) @@ -3231,8 +3720,8 @@ timestamp: 2023-11-18 02:37:34 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:refseq_rna (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:refseq_rna (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/refseq_rna-ncbigene.tsv) @@ -3244,8 +3733,8 @@ timestamp: 2023-11-18 02:40:32 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:refseq_rna (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:refseq_rna (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/refseq_rna-omim_gene.tsv) @@ -3257,8 +3746,8 @@ timestamp: 2023-11-18 02:42:06 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:refseq_rna (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:refseq_rna (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/refseq_rna-pubmed.tsv) @@ -3270,8 +3759,8 @@ timestamp: 2023-11-18 02:43:55 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:refseq_rna (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:refseq_rna (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/refseq_rna-refseq_protein.tsv) @@ -3283,8 +3772,8 @@ timestamp: 2023-11-18 02:47:16 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:refseq_rna (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:refseq_rna (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/refseq_rna-taxonomy.tsv) @@ -3296,8 +3785,8 @@ timestamp: 2023-11-18 02:50:10 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:refseq_rna (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:refseq_rna (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/rhea-chebi.tsv) @@ -3309,8 +3798,8 @@ timestamp: 2023-11-12 15:31:42 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:rhea (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:rhea (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/rhea-ec.tsv) @@ -3322,8 +3811,8 @@ timestamp: 2023-11-12 15:31:42 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:rhea (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:rhea (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/rhea-go.tsv) @@ -3335,8 +3824,8 @@ timestamp: 2023-11-12 15:31:43 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:rhea (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:rhea (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/rhea-pubmed.tsv) @@ -3348,8 +3837,8 @@ timestamp: 2023-11-12 15:31:43 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:rhea (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:rhea (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/rhea-reactome_reaction.tsv) @@ -3361,8 +3850,8 @@ timestamp: 2023-11-12 15:31:44 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:rhea (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:rhea (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/rhea-uniprot.tsv) @@ -3374,8 +3863,8 @@ timestamp: 2023-11-12 15:32:36 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:rhea (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:rhea (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_accession-bioproject.tsv) @@ -3383,12 +3872,12 @@ Rule for TSV (output/tsv/sra_accession-bioproject.tsv) Investigating output/tsv/sra_accession-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 19:53:57 +0900 +timestamp: 2024-01-13 04:14:21 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_accession-biosample.tsv) @@ -3396,12 +3885,12 @@ Rule for TSV (output/tsv/sra_accession-biosample.tsv) Investigating output/tsv/sra_accession-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:01:04 +0900 +timestamp: 2024-01-13 04:21:11 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_accession-sra_analysis.tsv) @@ -3409,12 +3898,12 @@ Rule for TSV (output/tsv/sra_accession-sra_analysis.tsv) Investigating output/tsv/sra_accession-sra_analysis.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:02:04 +0900 +timestamp: 2024-01-13 04:22:12 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_accession-sra_experiment.tsv) @@ -3422,12 +3911,12 @@ Rule for TSV (output/tsv/sra_accession-sra_experiment.tsv) Investigating output/tsv/sra_accession-sra_experiment.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:08:08 +0900 +timestamp: 2024-01-13 04:28:07 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_accession-sra_project.tsv) @@ -3435,12 +3924,12 @@ Rule for TSV (output/tsv/sra_accession-sra_project.tsv) Investigating output/tsv/sra_accession-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:09:08 +0900 +timestamp: 2024-01-13 04:29:09 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_accession-sra_run.tsv) @@ -3448,12 +3937,12 @@ Rule for TSV (output/tsv/sra_accession-sra_run.tsv) Investigating output/tsv/sra_accession-sra_run.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:16:00 +0900 +timestamp: 2024-01-13 04:36:07 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_accession-sra_sample.tsv) @@ -3461,12 +3950,12 @@ Rule for TSV (output/tsv/sra_accession-sra_sample.tsv) Investigating output/tsv/sra_accession-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:21:53 +0900 +timestamp: 2024-01-13 04:42:09 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_experiment-bioproject.tsv) @@ -3474,12 +3963,12 @@ Rule for TSV (output/tsv/sra_experiment-bioproject.tsv) Investigating output/tsv/sra_experiment-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:25:14 +0900 +timestamp: 2024-01-13 04:45:33 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_experiment-biosample.tsv) @@ -3487,12 +3976,12 @@ Rule for TSV (output/tsv/sra_experiment-biosample.tsv) Investigating output/tsv/sra_experiment-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:28:29 +0900 +timestamp: 2024-01-13 04:48:42 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_experiment-sra_project.tsv) @@ -3500,12 +3989,12 @@ Rule for TSV (output/tsv/sra_experiment-sra_project.tsv) Investigating output/tsv/sra_experiment-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:31:14 +0900 +timestamp: 2024-01-13 04:51:24 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_experiment-sra_sample.tsv) @@ -3513,12 +4002,12 @@ Rule for TSV (output/tsv/sra_experiment-sra_sample.tsv) Investigating output/tsv/sra_experiment-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:33:56 +0900 +timestamp: 2024-01-13 04:54:01 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_project-bioproject.tsv) @@ -3526,12 +4015,12 @@ Rule for TSV (output/tsv/sra_project-bioproject.tsv) Investigating output/tsv/sra_project-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:34:56 +0900 +timestamp: 2024-01-13 04:55:01 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_run-bioproject.tsv) @@ -3539,12 +4028,12 @@ Rule for TSV (output/tsv/sra_run-bioproject.tsv) Investigating output/tsv/sra_run-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:38:36 +0900 +timestamp: 2024-01-13 04:58:38 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_run-biosample.tsv) @@ -3552,12 +4041,12 @@ Rule for TSV (output/tsv/sra_run-biosample.tsv) Investigating output/tsv/sra_run-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:42:13 +0900 +timestamp: 2024-01-13 05:02:16 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_run-sra_experiment.tsv) @@ -3565,12 +4054,12 @@ Rule for TSV (output/tsv/sra_run-sra_experiment.tsv) Investigating output/tsv/sra_run-sra_experiment.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:45:08 +0900 +timestamp: 2024-01-13 05:05:17 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_run-sra_project.tsv) @@ -3578,12 +4067,12 @@ Rule for TSV (output/tsv/sra_run-sra_project.tsv) Investigating output/tsv/sra_run-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:48:09 +0900 +timestamp: 2024-01-13 05:08:26 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_run-sra_sample.tsv) @@ -3591,12 +4080,12 @@ Rule for TSV (output/tsv/sra_run-sra_sample.tsv) Investigating output/tsv/sra_run-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:51:11 +0900 +timestamp: 2024-01-13 05:11:29 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/sra_sample-biosample.tsv) @@ -3604,12 +4093,12 @@ Rule for TSV (output/tsv/sra_sample-biosample.tsv) Investigating output/tsv/sra_sample-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:54:05 +0900 +timestamp: 2024-01-13 05:14:27 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:sra (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:sra (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/swisslipids-chebi.tsv) @@ -3617,12 +4106,12 @@ Rule for TSV (output/tsv/swisslipids-chebi.tsv) Investigating output/tsv/swisslipids-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:54:20 +0900 +timestamp: 2024-01-13 05:14:42 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:swisslipids (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:swisslipids (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/swisslipids-hmdb.tsv) @@ -3630,12 +4119,12 @@ Rule for TSV (output/tsv/swisslipids-hmdb.tsv) Investigating output/tsv/swisslipids-hmdb.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:54:34 +0900 +timestamp: 2024-01-13 05:14:56 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:swisslipids (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:swisslipids (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/swisslipids-inchi_key.tsv) @@ -3643,12 +4132,12 @@ Rule for TSV (output/tsv/swisslipids-inchi_key.tsv) Investigating output/tsv/swisslipids-inchi_key.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:54:46 +0900 +timestamp: 2024-01-13 05:15:08 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:swisslipids (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:swisslipids (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/taxonomy-pubmed.tsv) @@ -3656,12 +4145,12 @@ Rule for TSV (output/tsv/taxonomy-pubmed.tsv) Investigating output/tsv/taxonomy-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 20:54:46 +0900 +timestamp: 2024-01-13 05:15:08 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:taxonomy (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:taxonomy (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/togovar-clinvar.tsv) @@ -3685,8 +4174,8 @@ timestamp: 2023-11-12 17:18:25 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-dbsnp.tsv) @@ -3698,8 +4187,8 @@ timestamp: 2023-11-12 17:18:49 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-ec.tsv) @@ -3711,8 +4200,8 @@ timestamp: 2023-11-12 17:48:56 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-ensembl_gene.tsv) @@ -3724,8 +4213,8 @@ timestamp: 2023-11-12 18:39:02 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-ensembl_protein.tsv) @@ -3737,8 +4226,8 @@ timestamp: 2023-11-12 19:28:13 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-ensembl_transcript.tsv) @@ -3750,8 +4239,8 @@ timestamp: 2023-11-12 20:17:32 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-go.tsv) @@ -3763,8 +4252,8 @@ timestamp: 2023-11-12 20:33:52 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-hgnc.tsv) @@ -3776,8 +4265,8 @@ timestamp: 2023-11-12 21:14:31 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-insdc.tsv) @@ -3789,8 +4278,8 @@ timestamp: 2023-11-12 22:03:51 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-intact.tsv) @@ -3802,8 +4291,8 @@ timestamp: 2023-11-12 22:04:53 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-ncbigene.tsv) @@ -3815,8 +4304,8 @@ timestamp: 2023-11-12 22:46:30 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-oma_group.tsv) @@ -3828,8 +4317,8 @@ timestamp: 2023-11-12 23:28:27 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-omim_gene.tsv) @@ -3841,8 +4330,8 @@ timestamp: 2023-11-12 23:28:33 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-omim_phenotype.tsv) @@ -3854,8 +4343,8 @@ timestamp: 2023-11-12 23:28:36 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-orphanet_phenotype.tsv) @@ -3867,8 +4356,8 @@ timestamp: 2023-11-13 00:17:48 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-pdb.tsv) @@ -3880,8 +4369,8 @@ timestamp: 2023-11-13 00:59:24 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-reactome_pathway.tsv) @@ -3893,8 +4382,8 @@ timestamp: 2023-11-13 01:48:51 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-refseq_protein.tsv) @@ -3906,8 +4395,8 @@ timestamp: 2023-11-13 02:32:17 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot-uniprot_mnemonic.tsv) @@ -3919,8 +4408,8 @@ timestamp: 2023-11-13 03:29:18 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot_reference_proteome-assembly_insdc.tsv) @@ -3928,12 +4417,12 @@ Rule for TSV (output/tsv/uniprot_reference_proteome-assembly_insdc.tsv) Investigating output/tsv/uniprot_reference_proteome-assembly_insdc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:01:06 +0900 +timestamp: 2024-01-13 05:21:43 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot_reference_proteome-assembly_refseq.tsv) @@ -3941,12 +4430,12 @@ Rule for TSV (output/tsv/uniprot_reference_proteome-assembly_refseq.tsv) Investigating output/tsv/uniprot_reference_proteome-assembly_refseq.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:01:07 +0900 +timestamp: 2024-01-13 05:21:44 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ Rule for TSV (output/tsv/uniprot_reference_proteome-taxonomy.tsv) @@ -3954,68 +4443,68 @@ Rule for TSV (output/tsv/uniprot_reference_proteome-taxonomy.tsv) Investigating output/tsv/uniprot_reference_proteome-taxonomy.tsv class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:01:07 +0900 +timestamp: 2024-01-13 05:21:44 +0900 pre-requisites: --output/tsv/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---prepare:uniprot (2024-01-05 21:01:25 +0900) -latest-prerequisite time: 2024-01-05 21:01:25 +0900 +--prepare:uniprot (2024-01-13 05:22:03 +0900) +latest-prerequisite time: 2024-01-13 05:22:03 +0900 ................................ ### Update TTL for affy_probeset-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/affy_probeset-ncbigene.ttl is older than output/tsv/affy_probeset-ncbigene.tsv ## Convert output/tsv/affy_probeset-ncbigene.tsv => output/ttl/affy_probeset-ncbigene.ttl -< 2024-01-05T21:01:25 affy_probeset-ncbigene +< 2024-01-13T05:22:03 affy_probeset-ncbigene togoid-config config/affy_probeset-ncbigene convert -> 2024-01-05T21:01:26 affy_probeset-ncbigene +> 2024-01-13T05:22:04 affy_probeset-ncbigene ### Update TTL for assembly_insdc-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-bioproject.ttl is older than output/tsv/assembly_insdc-bioproject.tsv ## Convert output/tsv/assembly_insdc-bioproject.tsv => output/ttl/assembly_insdc-bioproject.ttl -< 2024-01-05T21:01:26 assembly_insdc-bioproject +< 2024-01-13T05:22:04 assembly_insdc-bioproject togoid-config config/assembly_insdc-bioproject convert -> 2024-01-05T21:01:42 assembly_insdc-bioproject +> 2024-01-13T05:22:21 assembly_insdc-bioproject ### Update TTL for assembly_insdc-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-biosample.ttl is older than output/tsv/assembly_insdc-biosample.tsv ## Convert output/tsv/assembly_insdc-biosample.tsv => output/ttl/assembly_insdc-biosample.ttl -< 2024-01-05T21:01:42 assembly_insdc-biosample +< 2024-01-13T05:22:21 assembly_insdc-biosample togoid-config config/assembly_insdc-biosample convert -> 2024-01-05T21:01:59 assembly_insdc-biosample +> 2024-01-13T05:22:39 assembly_insdc-biosample ### Update TTL for assembly_insdc-insdc_master if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-insdc_master.ttl is older than output/tsv/assembly_insdc-insdc_master.tsv ## Convert output/tsv/assembly_insdc-insdc_master.tsv => output/ttl/assembly_insdc-insdc_master.ttl -< 2024-01-05T21:01:59 assembly_insdc-insdc_master +< 2024-01-13T05:22:39 assembly_insdc-insdc_master togoid-config config/assembly_insdc-insdc_master convert -> 2024-01-05T21:02:16 assembly_insdc-insdc_master +> 2024-01-13T05:22:56 assembly_insdc-insdc_master ### Update TTL for bioproject-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-biosample.ttl is older than output/tsv/bioproject-biosample.tsv ## Convert output/tsv/bioproject-biosample.tsv => output/ttl/bioproject-biosample.ttl -< 2024-01-05T21:02:16 bioproject-biosample +< 2024-01-13T05:22:56 bioproject-biosample togoid-config config/bioproject-biosample convert -> 2024-01-05T21:02:35 bioproject-biosample +> 2024-01-13T05:23:17 bioproject-biosample ### Update TTL for bioproject-geo_series if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-geo_series.ttl is older than output/tsv/bioproject-geo_series.tsv ## Convert output/tsv/bioproject-geo_series.tsv => output/ttl/bioproject-geo_series.ttl -< 2024-01-05T21:02:35 bioproject-geo_series +< 2024-01-13T05:23:17 bioproject-geo_series togoid-config config/bioproject-geo_series convert -> 2024-01-05T21:02:37 bioproject-geo_series +> 2024-01-13T05:23:19 bioproject-geo_series ### Update TTL for bioproject-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-pubmed.ttl is older than output/tsv/bioproject-pubmed.tsv ## Convert output/tsv/bioproject-pubmed.tsv => output/ttl/bioproject-pubmed.ttl -< 2024-01-05T21:02:37 bioproject-pubmed +< 2024-01-13T05:23:19 bioproject-pubmed togoid-config config/bioproject-pubmed convert -> 2024-01-05T21:02:39 bioproject-pubmed +> 2024-01-13T05:23:21 bioproject-pubmed ### Update TTL for bioproject_umbrella-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject_umbrella-bioproject.ttl is older than output/tsv/bioproject_umbrella-bioproject.tsv ## Convert output/tsv/bioproject_umbrella-bioproject.tsv => output/ttl/bioproject_umbrella-bioproject.ttl -< 2024-01-05T21:02:39 bioproject_umbrella-bioproject +< 2024-01-13T05:23:21 bioproject_umbrella-bioproject togoid-config config/bioproject_umbrella-bioproject convert -> 2024-01-05T21:02:40 bioproject_umbrella-bioproject +> 2024-01-13T05:23:23 bioproject_umbrella-bioproject ### Update TTL for biosample-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/biosample-bioproject.ttl is older than output/tsv/biosample-bioproject.tsv ## Convert output/tsv/biosample-bioproject.tsv => output/ttl/biosample-bioproject.ttl -< 2024-01-05T21:02:40 biosample-bioproject +< 2024-01-13T05:23:23 biosample-bioproject togoid-config config/biosample-bioproject convert -> 2024-01-05T21:02:59 biosample-bioproject +> 2024-01-13T05:23:42 biosample-bioproject ### Update TTL for cellosaurus-ncit_disease if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/cellosaurus-ncit_disease.ttl is newer than output/tsv/cellosaurus-ncit_disease.tsv # => Preserving output/ttl/cellosaurus-ncit_disease.ttl @@ -4025,114 +4514,114 @@ togoid-config config/biosample-bioproject convert ### Update TTL for chebi-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chebi-inchi_key.ttl is older than output/tsv/chebi-inchi_key.tsv ## Convert output/tsv/chebi-inchi_key.tsv => output/ttl/chebi-inchi_key.ttl -< 2024-01-05T21:02:59 chebi-inchi_key +< 2024-01-13T05:23:42 chebi-inchi_key togoid-config config/chebi-inchi_key convert -> 2024-01-05T21:03:01 chebi-inchi_key +> 2024-01-13T05:23:43 chebi-inchi_key ### Update TTL for chembl_compound-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-chebi.ttl is older than output/tsv/chembl_compound-chebi.tsv ## Convert output/tsv/chembl_compound-chebi.tsv => output/ttl/chembl_compound-chebi.ttl -< 2024-01-05T21:03:01 chembl_compound-chebi +< 2024-01-13T05:23:43 chembl_compound-chebi togoid-config config/chembl_compound-chebi convert -> 2024-01-05T21:03:01 chembl_compound-chebi +> 2024-01-13T05:23:43 chembl_compound-chebi ### Update TTL for chembl_compound-chembl_target if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-chembl_target.ttl is older than output/tsv/chembl_compound-chembl_target.tsv ## Convert output/tsv/chembl_compound-chembl_target.tsv => output/ttl/chembl_compound-chembl_target.ttl -< 2024-01-05T21:03:01 chembl_compound-chembl_target +< 2024-01-13T05:23:43 chembl_compound-chembl_target togoid-config config/chembl_compound-chembl_target convert -> 2024-01-05T21:03:29 chembl_compound-chembl_target +> 2024-01-13T05:24:14 chembl_compound-chembl_target ### Update TTL for chembl_compound-drugbank if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-drugbank.ttl is older than output/tsv/chembl_compound-drugbank.tsv ## Convert output/tsv/chembl_compound-drugbank.tsv => output/ttl/chembl_compound-drugbank.ttl -< 2024-01-05T21:03:29 chembl_compound-drugbank +< 2024-01-13T05:24:14 chembl_compound-drugbank togoid-config config/chembl_compound-drugbank convert -> 2024-01-05T21:03:29 chembl_compound-drugbank +> 2024-01-13T05:24:14 chembl_compound-drugbank ### Update TTL for chembl_compound-hmdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-hmdb.ttl is older than output/tsv/chembl_compound-hmdb.tsv ## Convert output/tsv/chembl_compound-hmdb.tsv => output/ttl/chembl_compound-hmdb.ttl -< 2024-01-05T21:03:29 chembl_compound-hmdb +< 2024-01-13T05:24:14 chembl_compound-hmdb togoid-config config/chembl_compound-hmdb convert -> 2024-01-05T21:03:30 chembl_compound-hmdb +> 2024-01-13T05:24:14 chembl_compound-hmdb ### Update TTL for chembl_compound-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-inchi_key.ttl is older than output/tsv/chembl_compound-inchi_key.tsv ## Convert output/tsv/chembl_compound-inchi_key.tsv => output/ttl/chembl_compound-inchi_key.ttl -< 2024-01-05T21:03:30 chembl_compound-inchi_key +< 2024-01-13T05:24:14 chembl_compound-inchi_key togoid-config config/chembl_compound-inchi_key convert -> 2024-01-05T21:03:48 chembl_compound-inchi_key +> 2024-01-13T05:24:32 chembl_compound-inchi_key ### Update TTL for chembl_compound-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-mesh.ttl is older than output/tsv/chembl_compound-mesh.tsv ## Convert output/tsv/chembl_compound-mesh.tsv => output/ttl/chembl_compound-mesh.ttl -< 2024-01-05T21:03:48 chembl_compound-mesh +< 2024-01-13T05:24:32 chembl_compound-mesh togoid-config config/chembl_compound-mesh convert -> 2024-01-05T21:03:48 chembl_compound-mesh +> 2024-01-13T05:24:33 chembl_compound-mesh ### Update TTL for chembl_compound-pdb_ccd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pdb_ccd.ttl is older than output/tsv/chembl_compound-pdb_ccd.tsv ## Convert output/tsv/chembl_compound-pdb_ccd.tsv => output/ttl/chembl_compound-pdb_ccd.ttl -< 2024-01-05T21:03:48 chembl_compound-pdb_ccd +< 2024-01-13T05:24:33 chembl_compound-pdb_ccd togoid-config config/chembl_compound-pdb_ccd convert -> 2024-01-05T21:03:48 chembl_compound-pdb_ccd +> 2024-01-13T05:24:33 chembl_compound-pdb_ccd ### Update TTL for chembl_compound-pubchem_compound if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubchem_compound.ttl is older than output/tsv/chembl_compound-pubchem_compound.tsv ## Convert output/tsv/chembl_compound-pubchem_compound.tsv => output/ttl/chembl_compound-pubchem_compound.ttl -< 2024-01-05T21:03:48 chembl_compound-pubchem_compound +< 2024-01-13T05:24:33 chembl_compound-pubchem_compound togoid-config config/chembl_compound-pubchem_compound convert -> 2024-01-05T21:04:04 chembl_compound-pubchem_compound +> 2024-01-13T05:24:50 chembl_compound-pubchem_compound ### Update TTL for chembl_compound-pubchem_substance if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubchem_substance.ttl is older than output/tsv/chembl_compound-pubchem_substance.tsv ## Convert output/tsv/chembl_compound-pubchem_substance.tsv => output/ttl/chembl_compound-pubchem_substance.ttl -< 2024-01-05T21:04:04 chembl_compound-pubchem_substance +< 2024-01-13T05:24:50 chembl_compound-pubchem_substance togoid-config config/chembl_compound-pubchem_substance convert -> 2024-01-05T21:04:08 chembl_compound-pubchem_substance +> 2024-01-13T05:24:53 chembl_compound-pubchem_substance ### Update TTL for chembl_compound-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubmed.ttl is older than output/tsv/chembl_compound-pubmed.tsv ## Convert output/tsv/chembl_compound-pubmed.tsv => output/ttl/chembl_compound-pubmed.ttl -< 2024-01-05T21:04:08 chembl_compound-pubmed +< 2024-01-13T05:24:53 chembl_compound-pubmed togoid-config config/chembl_compound-pubmed convert -> 2024-01-05T21:04:19 chembl_compound-pubmed +> 2024-01-13T05:25:06 chembl_compound-pubmed ### Update TTL for chembl_target-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/chembl_target-ensembl_gene.ttl is newer than output/tsv/chembl_target-ensembl_gene.tsv # => Preserving output/ttl/chembl_target-ensembl_gene.ttl ### Update TTL for chembl_target-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-go.ttl is older than output/tsv/chembl_target-go.tsv ## Convert output/tsv/chembl_target-go.tsv => output/ttl/chembl_target-go.ttl -< 2024-01-05T21:04:19 chembl_target-go +< 2024-01-13T05:25:06 chembl_target-go togoid-config config/chembl_target-go convert -> 2024-01-05T21:04:19 chembl_target-go +> 2024-01-13T05:25:06 chembl_target-go ### Update TTL for chembl_target-interpro if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-interpro.ttl is older than output/tsv/chembl_target-interpro.tsv ## Convert output/tsv/chembl_target-interpro.tsv => output/ttl/chembl_target-interpro.ttl -< 2024-01-05T21:04:19 chembl_target-interpro +< 2024-01-13T05:25:06 chembl_target-interpro togoid-config config/chembl_target-interpro convert -> 2024-01-05T21:04:19 chembl_target-interpro +> 2024-01-13T05:25:07 chembl_target-interpro ### Update TTL for chembl_target-pdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-pdb.ttl is older than output/tsv/chembl_target-pdb.tsv ## Convert output/tsv/chembl_target-pdb.tsv => output/ttl/chembl_target-pdb.ttl -< 2024-01-05T21:04:19 chembl_target-pdb +< 2024-01-13T05:25:07 chembl_target-pdb togoid-config config/chembl_target-pdb convert -> 2024-01-05T21:04:20 chembl_target-pdb +> 2024-01-13T05:25:07 chembl_target-pdb ### Update TTL for chembl_target-pfam if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-pfam.ttl is older than output/tsv/chembl_target-pfam.tsv ## Convert output/tsv/chembl_target-pfam.tsv => output/ttl/chembl_target-pfam.ttl -< 2024-01-05T21:04:20 chembl_target-pfam +< 2024-01-13T05:25:07 chembl_target-pfam togoid-config config/chembl_target-pfam convert -> 2024-01-05T21:04:20 chembl_target-pfam +> 2024-01-13T05:25:07 chembl_target-pfam ### Update TTL for chembl_target-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-reactome_pathway.ttl is older than output/tsv/chembl_target-reactome_pathway.tsv ## Convert output/tsv/chembl_target-reactome_pathway.tsv => output/ttl/chembl_target-reactome_pathway.ttl -< 2024-01-05T21:04:20 chembl_target-reactome_pathway +< 2024-01-13T05:25:07 chembl_target-reactome_pathway togoid-config config/chembl_target-reactome_pathway convert -> 2024-01-05T21:04:20 chembl_target-reactome_pathway +> 2024-01-13T05:25:07 chembl_target-reactome_pathway ### Update TTL for chembl_target-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-uniprot.ttl is older than output/tsv/chembl_target-uniprot.tsv ## Convert output/tsv/chembl_target-uniprot.tsv => output/ttl/chembl_target-uniprot.ttl -< 2024-01-05T21:04:20 chembl_target-uniprot +< 2024-01-13T05:25:07 chembl_target-uniprot togoid-config config/chembl_target-uniprot convert -> 2024-01-05T21:04:20 chembl_target-uniprot +> 2024-01-13T05:25:08 chembl_target-uniprot ### Update TTL for clinvar-medgen if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-medgen.ttl is older than output/tsv/clinvar-medgen.tsv ## Convert output/tsv/clinvar-medgen.tsv => output/ttl/clinvar-medgen.ttl -< 2024-01-05T21:04:20 clinvar-medgen +< 2024-01-13T05:25:08 clinvar-medgen togoid-config config/clinvar-medgen convert -> 2024-01-05T21:04:32 clinvar-medgen +> 2024-01-13T05:25:20 clinvar-medgen ### Update TTL for cog-insdc if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/cog-insdc.ttl is newer than output/tsv/cog-insdc.tsv # => Preserving output/ttl/cog-insdc.ttl @@ -4142,201 +4631,201 @@ togoid-config config/clinvar-medgen convert ### Update TTL for doid-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-mesh.ttl is older than output/tsv/doid-mesh.tsv ## Convert output/tsv/doid-mesh.tsv => output/ttl/doid-mesh.ttl -< 2024-01-05T21:04:32 doid-mesh +< 2024-01-13T05:25:20 doid-mesh togoid-config config/doid-mesh convert -> 2024-01-05T21:04:33 doid-mesh +> 2024-01-13T05:25:20 doid-mesh ### Update TTL for doid-ncit_disease if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-ncit_disease.ttl is older than output/tsv/doid-ncit_disease.tsv ## Convert output/tsv/doid-ncit_disease.tsv => output/ttl/doid-ncit_disease.ttl -< 2024-01-05T21:04:33 doid-ncit_disease +< 2024-01-13T05:25:20 doid-ncit_disease togoid-config config/doid-ncit_disease convert -> 2024-01-05T21:04:33 doid-ncit_disease +> 2024-01-13T05:25:20 doid-ncit_disease ### Update TTL for doid-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-omim_phenotype.ttl is older than output/tsv/doid-omim_phenotype.tsv ## Convert output/tsv/doid-omim_phenotype.tsv => output/ttl/doid-omim_phenotype.ttl -< 2024-01-05T21:04:33 doid-omim_phenotype +< 2024-01-13T05:25:20 doid-omim_phenotype togoid-config config/doid-omim_phenotype convert -> 2024-01-05T21:04:33 doid-omim_phenotype +> 2024-01-13T05:25:21 doid-omim_phenotype ### Update TTL for ensembl_gene-affy_probeset if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-affy_probeset.ttl is older than output/tsv/ensembl_gene-affy_probeset.tsv ## Convert output/tsv/ensembl_gene-affy_probeset.tsv => output/ttl/ensembl_gene-affy_probeset.ttl -< 2024-01-05T21:04:33 ensembl_gene-affy_probeset +< 2024-01-13T05:25:21 ensembl_gene-affy_probeset togoid-config config/ensembl_gene-affy_probeset convert -> 2024-01-05T21:04:33 ensembl_gene-affy_probeset +> 2024-01-13T05:25:21 ensembl_gene-affy_probeset ### Update TTL for ensembl_gene-ensembl_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ensembl_protein.ttl is older than output/tsv/ensembl_gene-ensembl_protein.tsv ## Convert output/tsv/ensembl_gene-ensembl_protein.tsv => output/ttl/ensembl_gene-ensembl_protein.ttl -< 2024-01-05T21:04:33 ensembl_gene-ensembl_protein +< 2024-01-13T05:25:21 ensembl_gene-ensembl_protein togoid-config config/ensembl_gene-ensembl_protein convert -> 2024-01-05T21:06:23 ensembl_gene-ensembl_protein +> 2024-01-13T05:27:11 ensembl_gene-ensembl_protein ### Update TTL for ensembl_gene-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ensembl_transcript.ttl is older than output/tsv/ensembl_gene-ensembl_transcript.tsv ## Convert output/tsv/ensembl_gene-ensembl_transcript.tsv => output/ttl/ensembl_gene-ensembl_transcript.ttl -< 2024-01-05T21:06:23 ensembl_gene-ensembl_transcript +< 2024-01-13T05:27:11 ensembl_gene-ensembl_transcript togoid-config config/ensembl_gene-ensembl_transcript convert -> 2024-01-05T21:08:39 ensembl_gene-ensembl_transcript +> 2024-01-13T05:29:34 ensembl_gene-ensembl_transcript ### Update TTL for ensembl_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-hgnc.ttl is older than output/tsv/ensembl_gene-hgnc.tsv ## Convert output/tsv/ensembl_gene-hgnc.tsv => output/ttl/ensembl_gene-hgnc.ttl -< 2024-01-05T21:08:39 ensembl_gene-hgnc +< 2024-01-13T05:29:34 ensembl_gene-hgnc togoid-config config/ensembl_gene-hgnc convert -> 2024-01-05T21:08:40 ensembl_gene-hgnc +> 2024-01-13T05:29:35 ensembl_gene-hgnc ### Update TTL for ensembl_gene-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ncbigene.ttl is older than output/tsv/ensembl_gene-ncbigene.tsv ## Convert output/tsv/ensembl_gene-ncbigene.tsv => output/ttl/ensembl_gene-ncbigene.ttl -< 2024-01-05T21:08:40 ensembl_gene-ncbigene +< 2024-01-13T05:29:35 ensembl_gene-ncbigene togoid-config config/ensembl_gene-ncbigene convert -> 2024-01-05T21:09:30 ensembl_gene-ncbigene +> 2024-01-13T05:31:00 ensembl_gene-ncbigene ### Update TTL for ensembl_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-uniprot.ttl is older than output/tsv/ensembl_gene-uniprot.tsv ## Convert output/tsv/ensembl_gene-uniprot.tsv => output/ttl/ensembl_gene-uniprot.ttl -< 2024-01-05T21:09:30 ensembl_gene-uniprot +< 2024-01-13T05:31:00 ensembl_gene-uniprot togoid-config config/ensembl_gene-uniprot convert -> 2024-01-05T21:10:12 ensembl_gene-uniprot +> 2024-01-13T05:31:43 ensembl_gene-uniprot ### Update TTL for ensembl_protein-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_protein-ensembl_transcript.ttl is older than output/tsv/ensembl_protein-ensembl_transcript.tsv ## Convert output/tsv/ensembl_protein-ensembl_transcript.tsv => output/ttl/ensembl_protein-ensembl_transcript.ttl -< 2024-01-05T21:10:12 ensembl_protein-ensembl_transcript +< 2024-01-13T05:31:43 ensembl_protein-ensembl_transcript togoid-config config/ensembl_protein-ensembl_transcript convert -> 2024-01-05T21:12:02 ensembl_protein-ensembl_transcript +> 2024-01-13T05:33:34 ensembl_protein-ensembl_transcript ### Update TTL for ensembl_transcript-affy_probeset if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-affy_probeset.ttl is older than output/tsv/ensembl_transcript-affy_probeset.tsv ## Convert output/tsv/ensembl_transcript-affy_probeset.tsv => output/ttl/ensembl_transcript-affy_probeset.ttl -< 2024-01-05T21:12:02 ensembl_transcript-affy_probeset +< 2024-01-13T05:33:34 ensembl_transcript-affy_probeset togoid-config config/ensembl_transcript-affy_probeset convert -> 2024-01-05T21:12:04 ensembl_transcript-affy_probeset +> 2024-01-13T05:33:36 ensembl_transcript-affy_probeset ### Update TTL for ensembl_transcript-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-go.ttl is older than output/tsv/ensembl_transcript-go.tsv ## Convert output/tsv/ensembl_transcript-go.tsv => output/ttl/ensembl_transcript-go.ttl -< 2024-01-05T21:12:04 ensembl_transcript-go +< 2024-01-13T05:33:36 ensembl_transcript-go togoid-config config/ensembl_transcript-go convert -> 2024-01-05T21:22:49 ensembl_transcript-go +> 2024-01-13T05:46:07 ensembl_transcript-go ### Update TTL for ensembl_transcript-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-hgnc.ttl is older than output/tsv/ensembl_transcript-hgnc.tsv ## Convert output/tsv/ensembl_transcript-hgnc.tsv => output/ttl/ensembl_transcript-hgnc.ttl -< 2024-01-05T21:22:49 ensembl_transcript-hgnc +< 2024-01-13T05:46:07 ensembl_transcript-hgnc togoid-config config/ensembl_transcript-hgnc convert -> 2024-01-05T21:22:51 ensembl_transcript-hgnc +> 2024-01-13T05:46:09 ensembl_transcript-hgnc ### Update TTL for ensembl_transcript-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-refseq_rna.ttl is older than output/tsv/ensembl_transcript-refseq_rna.tsv ## Convert output/tsv/ensembl_transcript-refseq_rna.tsv => output/ttl/ensembl_transcript-refseq_rna.ttl -< 2024-01-05T21:22:51 ensembl_transcript-refseq_rna +< 2024-01-13T05:46:09 ensembl_transcript-refseq_rna togoid-config config/ensembl_transcript-refseq_rna convert -> 2024-01-05T21:24:15 ensembl_transcript-refseq_rna +> 2024-01-13T05:48:13 ensembl_transcript-refseq_rna ### Update TTL for gea-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/gea-bioproject.ttl is older than output/tsv/gea-bioproject.tsv ## Convert output/tsv/gea-bioproject.tsv => output/ttl/gea-bioproject.ttl -< 2024-01-05T21:24:15 gea-bioproject +< 2024-01-13T05:48:13 gea-bioproject togoid-config config/gea-bioproject convert -> 2024-01-05T21:24:15 gea-bioproject +> 2024-01-13T05:48:13 gea-bioproject ### Update TTL for gea-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/gea-biosample.ttl is older than output/tsv/gea-biosample.tsv ## Convert output/tsv/gea-biosample.tsv => output/ttl/gea-biosample.ttl -< 2024-01-05T21:24:15 gea-biosample +< 2024-01-13T05:48:13 gea-biosample togoid-config config/gea-biosample convert -> 2024-01-05T21:24:15 gea-biosample +> 2024-01-13T05:48:14 gea-biosample ### Update TTL for glytoucan-doid if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/glytoucan-doid.ttl is older than output/tsv/glytoucan-doid.tsv ## Convert output/tsv/glytoucan-doid.tsv => output/ttl/glytoucan-doid.ttl -< 2024-01-05T21:24:15 glytoucan-doid +< 2024-01-13T05:48:14 glytoucan-doid togoid-config config/glytoucan-doid convert -> 2024-01-05T21:24:15 glytoucan-doid +> 2024-01-13T05:48:14 glytoucan-doid ### Update TTL for glytoucan-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/glytoucan-ncbigene.ttl is older than output/tsv/glytoucan-ncbigene.tsv ## Convert output/tsv/glytoucan-ncbigene.tsv => output/ttl/glytoucan-ncbigene.ttl -< 2024-01-05T21:24:15 glytoucan-ncbigene +< 2024-01-13T05:48:14 glytoucan-ncbigene togoid-config config/glytoucan-ncbigene convert -> 2024-01-05T21:24:15 glytoucan-ncbigene +> 2024-01-13T05:48:14 glytoucan-ncbigene ### Update TTL for glytoucan-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/glytoucan-uniprot.ttl is older than output/tsv/glytoucan-uniprot.tsv ## Convert output/tsv/glytoucan-uniprot.tsv => output/ttl/glytoucan-uniprot.ttl -< 2024-01-05T21:24:15 glytoucan-uniprot +< 2024-01-13T05:48:14 glytoucan-uniprot togoid-config config/glytoucan-uniprot convert -> 2024-01-05T21:24:16 glytoucan-uniprot +> 2024-01-13T05:48:15 glytoucan-uniprot ### Update TTL for hgnc-ccds if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-ccds.ttl is older than output/tsv/hgnc-ccds.tsv ## Convert output/tsv/hgnc-ccds.tsv => output/ttl/hgnc-ccds.ttl -< 2024-01-05T21:24:16 hgnc-ccds +< 2024-01-13T05:48:15 hgnc-ccds togoid-config config/hgnc-ccds convert -> 2024-01-05T21:24:16 hgnc-ccds +> 2024-01-13T05:48:16 hgnc-ccds ### Update TTL for hgnc-ec if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-ec.ttl is older than output/tsv/hgnc-ec.tsv ## Convert output/tsv/hgnc-ec.tsv => output/ttl/hgnc-ec.ttl -< 2024-01-05T21:24:16 hgnc-ec +< 2024-01-13T05:48:16 hgnc-ec togoid-config config/hgnc-ec convert -> 2024-01-05T21:24:16 hgnc-ec +> 2024-01-13T05:48:16 hgnc-ec ### Update TTL for hgnc-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-ensembl_gene.ttl is older than output/tsv/hgnc-ensembl_gene.tsv ## Convert output/tsv/hgnc-ensembl_gene.tsv => output/ttl/hgnc-ensembl_gene.ttl -< 2024-01-05T21:24:16 hgnc-ensembl_gene +< 2024-01-13T05:48:16 hgnc-ensembl_gene togoid-config config/hgnc-ensembl_gene convert -> 2024-01-05T21:24:17 hgnc-ensembl_gene +> 2024-01-13T05:48:16 hgnc-ensembl_gene ### Update TTL for hgnc-hgnc_symbol if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-hgnc_symbol.ttl is older than output/tsv/hgnc-hgnc_symbol.tsv ## Convert output/tsv/hgnc-hgnc_symbol.tsv => output/ttl/hgnc-hgnc_symbol.ttl -< 2024-01-05T21:24:17 hgnc-hgnc_symbol +< 2024-01-13T05:48:16 hgnc-hgnc_symbol togoid-config config/hgnc-hgnc_symbol convert -> 2024-01-05T21:24:17 hgnc-hgnc_symbol +> 2024-01-13T05:48:17 hgnc-hgnc_symbol ### Update TTL for hgnc-insdc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-insdc.ttl is older than output/tsv/hgnc-insdc.tsv ## Convert output/tsv/hgnc-insdc.tsv => output/ttl/hgnc-insdc.ttl -< 2024-01-05T21:24:17 hgnc-insdc +< 2024-01-13T05:48:17 hgnc-insdc togoid-config config/hgnc-insdc convert -> 2024-01-05T21:24:18 hgnc-insdc +> 2024-01-13T05:48:17 hgnc-insdc ### Update TTL for hgnc-lrg if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-lrg.ttl is older than output/tsv/hgnc-lrg.tsv ## Convert output/tsv/hgnc-lrg.tsv => output/ttl/hgnc-lrg.ttl -< 2024-01-05T21:24:18 hgnc-lrg +< 2024-01-13T05:48:17 hgnc-lrg togoid-config config/hgnc-lrg convert -> 2024-01-05T21:24:18 hgnc-lrg +> 2024-01-13T05:48:18 hgnc-lrg ### Update TTL for hgnc-mgi_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-mgi_gene.ttl is older than output/tsv/hgnc-mgi_gene.tsv ## Convert output/tsv/hgnc-mgi_gene.tsv => output/ttl/hgnc-mgi_gene.ttl -< 2024-01-05T21:24:18 hgnc-mgi_gene +< 2024-01-13T05:48:18 hgnc-mgi_gene togoid-config config/hgnc-mgi_gene convert -> 2024-01-05T21:24:18 hgnc-mgi_gene +> 2024-01-13T05:48:18 hgnc-mgi_gene ### Update TTL for hgnc-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-mirbase.ttl is older than output/tsv/hgnc-mirbase.tsv ## Convert output/tsv/hgnc-mirbase.tsv => output/ttl/hgnc-mirbase.ttl -< 2024-01-05T21:24:18 hgnc-mirbase +< 2024-01-13T05:48:18 hgnc-mirbase togoid-config config/hgnc-mirbase convert -> 2024-01-05T21:24:18 hgnc-mirbase +> 2024-01-13T05:48:18 hgnc-mirbase ### Update TTL for hgnc-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-ncbigene.ttl is older than output/tsv/hgnc-ncbigene.tsv ## Convert output/tsv/hgnc-ncbigene.tsv => output/ttl/hgnc-ncbigene.ttl -< 2024-01-05T21:24:18 hgnc-ncbigene +< 2024-01-13T05:48:18 hgnc-ncbigene togoid-config config/hgnc-ncbigene convert -> 2024-01-05T21:24:19 hgnc-ncbigene +> 2024-01-13T05:48:19 hgnc-ncbigene ### Update TTL for hgnc-omim_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-omim_gene.ttl is older than output/tsv/hgnc-omim_gene.tsv ## Convert output/tsv/hgnc-omim_gene.tsv => output/ttl/hgnc-omim_gene.ttl -< 2024-01-05T21:24:19 hgnc-omim_gene +< 2024-01-13T05:48:19 hgnc-omim_gene togoid-config config/hgnc-omim_gene convert -> 2024-01-05T21:24:19 hgnc-omim_gene +> 2024-01-13T05:48:19 hgnc-omim_gene ### Update TTL for hgnc-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-pubmed.ttl is older than output/tsv/hgnc-pubmed.tsv ## Convert output/tsv/hgnc-pubmed.tsv => output/ttl/hgnc-pubmed.ttl -< 2024-01-05T21:24:19 hgnc-pubmed +< 2024-01-13T05:48:19 hgnc-pubmed togoid-config config/hgnc-pubmed convert -> 2024-01-05T21:24:19 hgnc-pubmed +> 2024-01-13T05:48:20 hgnc-pubmed ### Update TTL for hgnc-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-refseq_rna.ttl is older than output/tsv/hgnc-refseq_rna.tsv ## Convert output/tsv/hgnc-refseq_rna.tsv => output/ttl/hgnc-refseq_rna.ttl -< 2024-01-05T21:24:19 hgnc-refseq_rna +< 2024-01-13T05:48:20 hgnc-refseq_rna togoid-config config/hgnc-refseq_rna convert -> 2024-01-05T21:24:20 hgnc-refseq_rna +> 2024-01-13T05:48:20 hgnc-refseq_rna ### Update TTL for hgnc-rgd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-rgd.ttl is older than output/tsv/hgnc-rgd.tsv ## Convert output/tsv/hgnc-rgd.tsv => output/ttl/hgnc-rgd.ttl -< 2024-01-05T21:24:20 hgnc-rgd +< 2024-01-13T05:48:20 hgnc-rgd togoid-config config/hgnc-rgd convert -> 2024-01-05T21:24:20 hgnc-rgd +> 2024-01-13T05:48:21 hgnc-rgd ### Update TTL for hgnc-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-uniprot.ttl is older than output/tsv/hgnc-uniprot.tsv ## Convert output/tsv/hgnc-uniprot.tsv => output/ttl/hgnc-uniprot.ttl -< 2024-01-05T21:24:20 hgnc-uniprot +< 2024-01-13T05:48:21 hgnc-uniprot togoid-config config/hgnc-uniprot convert -> 2024-01-05T21:24:20 hgnc-uniprot +> 2024-01-13T05:48:21 hgnc-uniprot ### Update TTL for hmdb-chebi if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/hmdb-chebi.ttl is newer than output/tsv/hmdb-chebi.tsv # => Preserving output/ttl/hmdb-chebi.ttl @@ -4355,39 +4844,45 @@ togoid-config config/hgnc-uniprot convert ### Update TTL for hp_inheritance-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hp_inheritance-omim_phenotype.ttl is older than output/tsv/hp_inheritance-omim_phenotype.tsv ## Convert output/tsv/hp_inheritance-omim_phenotype.tsv => output/ttl/hp_inheritance-omim_phenotype.ttl -< 2024-01-05T21:24:20 hp_inheritance-omim_phenotype +< 2024-01-13T05:48:21 hp_inheritance-omim_phenotype togoid-config config/hp_inheritance-omim_phenotype convert -> 2024-01-05T21:24:20 hp_inheritance-omim_phenotype -### Update TTL for hp_phenotype-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hp_phenotype-omim_phenotype.ttl is newer than output/tsv/hp_phenotype-omim_phenotype.tsv -# => Preserving output/ttl/hp_phenotype-omim_phenotype.ttl -### Update TTL for hp_phenotype-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hp_phenotype-orphanet_phenotype.ttl is newer than output/tsv/hp_phenotype-orphanet_phenotype.tsv -# => Preserving output/ttl/hp_phenotype-orphanet_phenotype.ttl +> 2024-01-13T05:48:21 hp_inheritance-omim_phenotype +### Update TTL for hp_phenotype-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hp_phenotype-omim_phenotype.ttl is older than output/tsv/hp_phenotype-omim_phenotype.tsv +## Convert output/tsv/hp_phenotype-omim_phenotype.tsv => output/ttl/hp_phenotype-omim_phenotype.ttl +< 2024-01-13T05:48:21 hp_phenotype-omim_phenotype +togoid-config config/hp_phenotype-omim_phenotype convert +> 2024-01-13T05:48:23 hp_phenotype-omim_phenotype +### Update TTL for hp_phenotype-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hp_phenotype-orphanet_phenotype.ttl is older than output/tsv/hp_phenotype-orphanet_phenotype.tsv +## Convert output/tsv/hp_phenotype-orphanet_phenotype.tsv => output/ttl/hp_phenotype-orphanet_phenotype.ttl +< 2024-01-13T05:48:23 hp_phenotype-orphanet_phenotype +togoid-config config/hp_phenotype-orphanet_phenotype convert +> 2024-01-13T05:48:24 hp_phenotype-orphanet_phenotype ### Update TTL for insdc-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc-bioproject.ttl is older than output/tsv/insdc-bioproject.tsv ## Convert output/tsv/insdc-bioproject.tsv => output/ttl/insdc-bioproject.ttl -< 2024-01-05T21:24:20 insdc-bioproject +< 2024-01-13T05:48:24 insdc-bioproject togoid-config config/insdc-bioproject convert -> 2024-01-05T21:33:29 insdc-bioproject +> 2024-01-13T05:57:32 insdc-bioproject ### Update TTL for insdc-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc-biosample.ttl is older than output/tsv/insdc-biosample.tsv ## Convert output/tsv/insdc-biosample.tsv => output/ttl/insdc-biosample.ttl -< 2024-01-05T21:33:29 insdc-biosample +< 2024-01-13T05:57:32 insdc-biosample togoid-config config/insdc-biosample convert -> 2024-01-05T22:12:24 insdc-biosample +> 2024-01-13T06:37:20 insdc-biosample ### Update TTL for insdc_master-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc_master-bioproject.ttl is older than output/tsv/insdc_master-bioproject.tsv ## Convert output/tsv/insdc_master-bioproject.tsv => output/ttl/insdc_master-bioproject.ttl -< 2024-01-05T22:12:24 insdc_master-bioproject +< 2024-01-13T06:37:20 insdc_master-bioproject togoid-config config/insdc_master-bioproject convert -> 2024-01-05T22:12:37 insdc_master-bioproject +> 2024-01-13T06:37:34 insdc_master-bioproject ### Update TTL for insdc_master-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc_master-biosample.ttl is older than output/tsv/insdc_master-biosample.tsv ## Convert output/tsv/insdc_master-biosample.tsv => output/ttl/insdc_master-biosample.ttl -< 2024-01-05T22:12:37 insdc_master-biosample +< 2024-01-13T06:37:34 insdc_master-biosample togoid-config config/insdc_master-biosample convert -> 2024-01-05T22:12:49 insdc_master-biosample +> 2024-01-13T06:37:47 insdc_master-biosample ### Update TTL for interpro-go if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/interpro-go.ttl is newer than output/tsv/interpro-go.tsv # => Preserving output/ttl/interpro-go.ttl @@ -4415,303 +4910,303 @@ togoid-config config/insdc_master-biosample convert ### Update TTL for jga_study-jga_dataset if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/jga_study-jga_dataset.ttl is older than output/tsv/jga_study-jga_dataset.tsv ## Convert output/tsv/jga_study-jga_dataset.tsv => output/ttl/jga_study-jga_dataset.ttl -< 2024-01-05T22:12:49 jga_study-jga_dataset +< 2024-01-13T06:37:47 jga_study-jga_dataset togoid-config config/jga_study-jga_dataset convert -> 2024-01-05T22:12:50 jga_study-jga_dataset +> 2024-01-13T06:37:47 jga_study-jga_dataset ### Update TTL for jga_study-nbdc_human_db if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/jga_study-nbdc_human_db.ttl is older than output/tsv/jga_study-nbdc_human_db.tsv ## Convert output/tsv/jga_study-nbdc_human_db.tsv => output/ttl/jga_study-nbdc_human_db.ttl -< 2024-01-05T22:12:50 jga_study-nbdc_human_db +< 2024-01-13T06:37:47 jga_study-nbdc_human_db togoid-config config/jga_study-nbdc_human_db convert -> 2024-01-05T22:12:50 jga_study-nbdc_human_db +> 2024-01-13T06:37:47 jga_study-nbdc_human_db ### Update TTL for jga_study-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/jga_study-pubmed.ttl is older than output/tsv/jga_study-pubmed.tsv ## Convert output/tsv/jga_study-pubmed.tsv => output/ttl/jga_study-pubmed.ttl -< 2024-01-05T22:12:50 jga_study-pubmed +< 2024-01-13T06:37:47 jga_study-pubmed togoid-config config/jga_study-pubmed convert -> 2024-01-05T22:12:50 jga_study-pubmed +> 2024-01-13T06:37:47 jga_study-pubmed ### Update TTL for lipidmaps-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/lipidmaps-chebi.ttl is older than output/tsv/lipidmaps-chebi.tsv ## Convert output/tsv/lipidmaps-chebi.tsv => output/ttl/lipidmaps-chebi.ttl -< 2024-01-05T22:12:50 lipidmaps-chebi +< 2024-01-13T06:37:47 lipidmaps-chebi togoid-config config/lipidmaps-chebi convert -> 2024-01-05T22:12:50 lipidmaps-chebi +> 2024-01-13T06:37:48 lipidmaps-chebi ### Update TTL for lipidmaps-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/lipidmaps-inchi_key.ttl is older than output/tsv/lipidmaps-inchi_key.tsv ## Convert output/tsv/lipidmaps-inchi_key.tsv => output/ttl/lipidmaps-inchi_key.ttl -< 2024-01-05T22:12:50 lipidmaps-inchi_key +< 2024-01-13T06:37:48 lipidmaps-inchi_key togoid-config config/lipidmaps-inchi_key convert -> 2024-01-05T22:12:51 lipidmaps-inchi_key +> 2024-01-13T06:37:48 lipidmaps-inchi_key ### Update TTL for lipidmaps-swisslipids if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/lipidmaps-swisslipids.ttl is older than output/tsv/lipidmaps-swisslipids.tsv ## Convert output/tsv/lipidmaps-swisslipids.tsv => output/ttl/lipidmaps-swisslipids.ttl -< 2024-01-05T22:12:51 lipidmaps-swisslipids +< 2024-01-13T06:37:48 lipidmaps-swisslipids togoid-config config/lipidmaps-swisslipids convert -> 2024-01-05T22:12:51 lipidmaps-swisslipids +> 2024-01-13T06:37:49 lipidmaps-swisslipids ### Update TTL for mbgd_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mbgd_gene-uniprot.ttl is older than output/tsv/mbgd_gene-uniprot.tsv ## Convert output/tsv/mbgd_gene-uniprot.tsv => output/ttl/mbgd_gene-uniprot.ttl -< 2024-01-05T22:12:51 mbgd_gene-uniprot +< 2024-01-13T06:37:49 mbgd_gene-uniprot togoid-config config/mbgd_gene-uniprot convert -> 2024-01-05T23:04:31 mbgd_gene-uniprot +> 2024-01-13T07:30:28 mbgd_gene-uniprot ### Update TTL for mbgd_organism-taxonomy if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mbgd_organism-taxonomy.ttl is older than output/tsv/mbgd_organism-taxonomy.tsv ## Convert output/tsv/mbgd_organism-taxonomy.tsv => output/ttl/mbgd_organism-taxonomy.ttl -< 2024-01-05T23:04:31 mbgd_organism-taxonomy +< 2024-01-13T07:30:28 mbgd_organism-taxonomy togoid-config config/mbgd_organism-taxonomy convert -> 2024-01-05T23:04:31 mbgd_organism-taxonomy +> 2024-01-13T07:30:29 mbgd_organism-taxonomy ### Update TTL for medgen-hp_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-hp_phenotype.ttl is older than output/tsv/medgen-hp_phenotype.tsv ## Convert output/tsv/medgen-hp_phenotype.tsv => output/ttl/medgen-hp_phenotype.ttl -< 2024-01-05T23:04:31 medgen-hp_phenotype +< 2024-01-13T07:30:29 medgen-hp_phenotype togoid-config config/medgen-hp_phenotype convert -> 2024-01-05T23:04:31 medgen-hp_phenotype +> 2024-01-13T07:30:30 medgen-hp_phenotype ### Update TTL for medgen-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-mesh.ttl is older than output/tsv/medgen-mesh.tsv ## Convert output/tsv/medgen-mesh.tsv => output/ttl/medgen-mesh.ttl -< 2024-01-05T23:04:31 medgen-mesh +< 2024-01-13T07:30:30 medgen-mesh togoid-config config/medgen-mesh convert -> 2024-01-05T23:04:32 medgen-mesh +> 2024-01-13T07:30:30 medgen-mesh ### Update TTL for medgen-mondo if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-mondo.ttl is older than output/tsv/medgen-mondo.tsv ## Convert output/tsv/medgen-mondo.tsv => output/ttl/medgen-mondo.ttl -< 2024-01-05T23:04:32 medgen-mondo +< 2024-01-13T07:30:30 medgen-mondo togoid-config config/medgen-mondo convert -> 2024-01-05T23:04:32 medgen-mondo +> 2024-01-13T07:30:30 medgen-mondo ### Update TTL for medgen-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-ncbigene.ttl is older than output/tsv/medgen-ncbigene.tsv ## Convert output/tsv/medgen-ncbigene.tsv => output/ttl/medgen-ncbigene.ttl -< 2024-01-05T23:04:32 medgen-ncbigene +< 2024-01-13T07:30:30 medgen-ncbigene togoid-config config/medgen-ncbigene convert -> 2024-01-05T23:04:32 medgen-ncbigene +> 2024-01-13T07:30:31 medgen-ncbigene ### Update TTL for medgen-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-omim_phenotype.ttl is older than output/tsv/medgen-omim_phenotype.tsv ## Convert output/tsv/medgen-omim_phenotype.tsv => output/ttl/medgen-omim_phenotype.ttl -< 2024-01-05T23:04:32 medgen-omim_phenotype +< 2024-01-13T07:30:31 medgen-omim_phenotype togoid-config config/medgen-omim_phenotype convert -> 2024-01-05T23:04:33 medgen-omim_phenotype +> 2024-01-13T07:30:31 medgen-omim_phenotype ### Update TTL for medgen-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-orphanet_phenotype.ttl is older than output/tsv/medgen-orphanet_phenotype.tsv ## Convert output/tsv/medgen-orphanet_phenotype.tsv => output/ttl/medgen-orphanet_phenotype.ttl -< 2024-01-05T23:04:33 medgen-orphanet_phenotype +< 2024-01-13T07:30:31 medgen-orphanet_phenotype togoid-config config/medgen-orphanet_phenotype convert -> 2024-01-05T23:04:33 medgen-orphanet_phenotype +> 2024-01-13T07:30:31 medgen-orphanet_phenotype ### Update TTL for mgi_gene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-ensembl_gene.ttl is older than output/tsv/mgi_gene-ensembl_gene.tsv ## Convert output/tsv/mgi_gene-ensembl_gene.tsv => output/ttl/mgi_gene-ensembl_gene.ttl -< 2024-01-05T23:04:33 mgi_gene-ensembl_gene +< 2024-01-13T07:30:31 mgi_gene-ensembl_gene togoid-config config/mgi_gene-ensembl_gene convert -> 2024-01-05T23:04:34 mgi_gene-ensembl_gene +> 2024-01-13T07:30:32 mgi_gene-ensembl_gene ### Update TTL for mgi_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-hgnc.ttl is older than output/tsv/mgi_gene-hgnc.tsv ## Convert output/tsv/mgi_gene-hgnc.tsv => output/ttl/mgi_gene-hgnc.ttl -< 2024-01-05T23:04:34 mgi_gene-hgnc +< 2024-01-13T07:30:32 mgi_gene-hgnc togoid-config config/mgi_gene-hgnc convert -> 2024-01-05T23:04:34 mgi_gene-hgnc +> 2024-01-13T07:30:33 mgi_gene-hgnc ### Update TTL for mgi_gene-mgi_allele if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-mgi_allele.ttl is older than output/tsv/mgi_gene-mgi_allele.tsv ## Convert output/tsv/mgi_gene-mgi_allele.tsv => output/ttl/mgi_gene-mgi_allele.ttl -< 2024-01-05T23:04:34 mgi_gene-mgi_allele +< 2024-01-13T07:30:33 mgi_gene-mgi_allele togoid-config config/mgi_gene-mgi_allele convert -> 2024-01-05T23:04:35 mgi_gene-mgi_allele +> 2024-01-13T07:30:34 mgi_gene-mgi_allele ### Update TTL for mgi_gene-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-ncbigene.ttl is older than output/tsv/mgi_gene-ncbigene.tsv ## Convert output/tsv/mgi_gene-ncbigene.tsv => output/ttl/mgi_gene-ncbigene.ttl -< 2024-01-05T23:04:35 mgi_gene-ncbigene +< 2024-01-13T07:30:34 mgi_gene-ncbigene togoid-config config/mgi_gene-ncbigene convert -> 2024-01-05T23:04:36 mgi_gene-ncbigene +> 2024-01-13T07:30:34 mgi_gene-ncbigene ### Update TTL for mgi_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-uniprot.ttl is older than output/tsv/mgi_gene-uniprot.tsv ## Convert output/tsv/mgi_gene-uniprot.tsv => output/ttl/mgi_gene-uniprot.ttl -< 2024-01-05T23:04:36 mgi_gene-uniprot +< 2024-01-13T07:30:34 mgi_gene-uniprot togoid-config config/mgi_gene-uniprot convert -> 2024-01-05T23:04:37 mgi_gene-uniprot +> 2024-01-13T07:30:35 mgi_gene-uniprot ### Update TTL for mgi_genotype-doid if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-doid.ttl is older than output/tsv/mgi_genotype-doid.tsv ## Convert output/tsv/mgi_genotype-doid.tsv => output/ttl/mgi_genotype-doid.ttl -< 2024-01-05T23:04:37 mgi_genotype-doid +< 2024-01-13T07:30:35 mgi_genotype-doid togoid-config config/mgi_genotype-doid convert -> 2024-01-05T23:04:37 mgi_genotype-doid +> 2024-01-13T07:30:36 mgi_genotype-doid ### Update TTL for mgi_genotype-mgi_allele if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-mgi_allele.ttl is older than output/tsv/mgi_genotype-mgi_allele.tsv ## Convert output/tsv/mgi_genotype-mgi_allele.tsv => output/ttl/mgi_genotype-mgi_allele.ttl -< 2024-01-05T23:04:37 mgi_genotype-mgi_allele +< 2024-01-13T07:30:36 mgi_genotype-mgi_allele togoid-config config/mgi_genotype-mgi_allele convert -> 2024-01-05T23:04:39 mgi_genotype-mgi_allele +> 2024-01-13T07:30:37 mgi_genotype-mgi_allele ### Update TTL for mgi_genotype-mp if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-mp.ttl is older than output/tsv/mgi_genotype-mp.tsv ## Convert output/tsv/mgi_genotype-mp.tsv => output/ttl/mgi_genotype-mp.ttl -< 2024-01-05T23:04:39 mgi_genotype-mp +< 2024-01-13T07:30:37 mgi_genotype-mp togoid-config config/mgi_genotype-mp convert -> 2024-01-05T23:04:42 mgi_genotype-mp +> 2024-01-13T07:30:40 mgi_genotype-mp ### Update TTL for mondo-doid if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mondo-doid.ttl is older than output/tsv/mondo-doid.tsv ## Convert output/tsv/mondo-doid.tsv => output/ttl/mondo-doid.ttl -< 2024-01-05T23:04:42 mondo-doid +< 2024-01-13T07:30:40 mondo-doid togoid-config config/mondo-doid convert -> 2024-01-05T23:04:43 mondo-doid +> 2024-01-13T07:30:40 mondo-doid ### Update TTL for mondo-hp_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mondo-hp_phenotype.ttl is older than output/tsv/mondo-hp_phenotype.tsv ## Convert output/tsv/mondo-hp_phenotype.tsv => output/ttl/mondo-hp_phenotype.ttl -< 2024-01-05T23:04:43 mondo-hp_phenotype +< 2024-01-13T07:30:40 mondo-hp_phenotype togoid-config config/mondo-hp_phenotype convert -> 2024-01-05T23:04:43 mondo-hp_phenotype +> 2024-01-13T07:30:41 mondo-hp_phenotype ### Update TTL for mondo-meddra if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mondo-meddra.ttl is older than output/tsv/mondo-meddra.tsv ## Convert output/tsv/mondo-meddra.tsv => output/ttl/mondo-meddra.ttl -< 2024-01-05T23:04:43 mondo-meddra +< 2024-01-13T07:30:41 mondo-meddra togoid-config config/mondo-meddra convert -> 2024-01-05T23:04:43 mondo-meddra +> 2024-01-13T07:30:41 mondo-meddra ### Update TTL for mondo-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mondo-mesh.ttl is older than output/tsv/mondo-mesh.tsv ## Convert output/tsv/mondo-mesh.tsv => output/ttl/mondo-mesh.ttl -< 2024-01-05T23:04:43 mondo-mesh +< 2024-01-13T07:30:41 mondo-mesh togoid-config config/mondo-mesh convert -> 2024-01-05T23:04:43 mondo-mesh +> 2024-01-13T07:30:41 mondo-mesh ### Update TTL for mondo-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mondo-omim_phenotype.ttl is older than output/tsv/mondo-omim_phenotype.tsv ## Convert output/tsv/mondo-omim_phenotype.tsv => output/ttl/mondo-omim_phenotype.ttl -< 2024-01-05T23:04:43 mondo-omim_phenotype +< 2024-01-13T07:30:41 mondo-omim_phenotype togoid-config config/mondo-omim_phenotype convert -> 2024-01-05T23:04:44 mondo-omim_phenotype +> 2024-01-13T07:30:41 mondo-omim_phenotype ### Update TTL for mondo-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mondo-orphanet_phenotype.ttl is older than output/tsv/mondo-orphanet_phenotype.tsv ## Convert output/tsv/mondo-orphanet_phenotype.tsv => output/ttl/mondo-orphanet_phenotype.ttl -< 2024-01-05T23:04:44 mondo-orphanet_phenotype +< 2024-01-13T07:30:41 mondo-orphanet_phenotype togoid-config config/mondo-orphanet_phenotype convert -> 2024-01-05T23:04:44 mondo-orphanet_phenotype +> 2024-01-13T07:30:41 mondo-orphanet_phenotype ### Update TTL for nando-mondo if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/nando-mondo.ttl is older than output/tsv/nando-mondo.tsv ## Convert output/tsv/nando-mondo.tsv => output/ttl/nando-mondo.ttl -< 2024-01-05T23:04:44 nando-mondo +< 2024-01-13T07:30:41 nando-mondo togoid-config config/nando-mondo convert -> 2024-01-05T23:04:44 nando-mondo +> 2024-01-13T07:30:42 nando-mondo ### Update TTL for ncbigene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_gene.ttl is older than output/tsv/ncbigene-ensembl_gene.tsv ## Convert output/tsv/ncbigene-ensembl_gene.tsv => output/ttl/ncbigene-ensembl_gene.ttl -< 2024-01-05T23:04:44 ncbigene-ensembl_gene +< 2024-01-13T07:30:42 ncbigene-ensembl_gene togoid-config config/ncbigene-ensembl_gene convert -> 2024-01-05T23:06:03 ncbigene-ensembl_gene +> 2024-01-13T07:32:01 ncbigene-ensembl_gene ### Update TTL for ncbigene-ensembl_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_protein.ttl is older than output/tsv/ncbigene-ensembl_protein.tsv ## Convert output/tsv/ncbigene-ensembl_protein.tsv => output/ttl/ncbigene-ensembl_protein.ttl -< 2024-01-05T23:06:03 ncbigene-ensembl_protein +< 2024-01-13T07:32:01 ncbigene-ensembl_protein togoid-config config/ncbigene-ensembl_protein convert -> 2024-01-05T23:07:33 ncbigene-ensembl_protein +> 2024-01-13T07:33:34 ncbigene-ensembl_protein ### Update TTL for ncbigene-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_transcript.ttl is older than output/tsv/ncbigene-ensembl_transcript.tsv ## Convert output/tsv/ncbigene-ensembl_transcript.tsv => output/ttl/ncbigene-ensembl_transcript.ttl -< 2024-01-05T23:07:33 ncbigene-ensembl_transcript +< 2024-01-13T07:33:34 ncbigene-ensembl_transcript togoid-config config/ncbigene-ensembl_transcript convert -> 2024-01-05T23:09:11 ncbigene-ensembl_transcript +> 2024-01-13T07:35:14 ncbigene-ensembl_transcript ### Update TTL for ncbigene-flybase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-flybase_gene.ttl is older than output/tsv/ncbigene-flybase_gene.tsv ## Convert output/tsv/ncbigene-flybase_gene.tsv => output/ttl/ncbigene-flybase_gene.ttl -< 2024-01-05T23:09:11 ncbigene-flybase_gene +< 2024-01-13T07:35:14 ncbigene-flybase_gene togoid-config config/ncbigene-flybase_gene convert -> 2024-01-05T23:09:11 ncbigene-flybase_gene +> 2024-01-13T07:35:14 ncbigene-flybase_gene ### Update TTL for ncbigene-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-go.ttl is older than output/tsv/ncbigene-go.tsv ## Convert output/tsv/ncbigene-go.tsv => output/ttl/ncbigene-go.ttl -< 2024-01-05T23:09:11 ncbigene-go +< 2024-01-13T07:35:14 ncbigene-go togoid-config config/ncbigene-go convert -> 2024-01-05T23:24:30 ncbigene-go +> 2024-01-13T07:50:19 ncbigene-go ### Update TTL for ncbigene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-hgnc.ttl is older than output/tsv/ncbigene-hgnc.tsv ## Convert output/tsv/ncbigene-hgnc.tsv => output/ttl/ncbigene-hgnc.ttl -< 2024-01-05T23:24:30 ncbigene-hgnc +< 2024-01-13T07:50:19 ncbigene-hgnc togoid-config config/ncbigene-hgnc convert -> 2024-01-05T23:24:30 ncbigene-hgnc +> 2024-01-13T07:50:20 ncbigene-hgnc ### Update TTL for ncbigene-mgi_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-mgi_gene.ttl is older than output/tsv/ncbigene-mgi_gene.tsv ## Convert output/tsv/ncbigene-mgi_gene.tsv => output/ttl/ncbigene-mgi_gene.ttl -< 2024-01-05T23:24:30 ncbigene-mgi_gene +< 2024-01-13T07:50:20 ncbigene-mgi_gene togoid-config config/ncbigene-mgi_gene convert -> 2024-01-05T23:24:31 ncbigene-mgi_gene +> 2024-01-13T07:50:21 ncbigene-mgi_gene ### Update TTL for ncbigene-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-mirbase.ttl is older than output/tsv/ncbigene-mirbase.tsv ## Convert output/tsv/ncbigene-mirbase.tsv => output/ttl/ncbigene-mirbase.ttl -< 2024-01-05T23:24:31 ncbigene-mirbase +< 2024-01-13T07:50:21 ncbigene-mirbase togoid-config config/ncbigene-mirbase convert -> 2024-01-05T23:24:31 ncbigene-mirbase +> 2024-01-13T07:50:21 ncbigene-mirbase ### Update TTL for ncbigene-omim_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-omim_gene.ttl is older than output/tsv/ncbigene-omim_gene.tsv ## Convert output/tsv/ncbigene-omim_gene.tsv => output/ttl/ncbigene-omim_gene.ttl -< 2024-01-05T23:24:31 ncbigene-omim_gene +< 2024-01-13T07:50:21 ncbigene-omim_gene togoid-config config/ncbigene-omim_gene convert -> 2024-01-05T23:24:31 ncbigene-omim_gene +> 2024-01-13T07:50:22 ncbigene-omim_gene ### Update TTL for ncbigene-refseq_genomic if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_genomic.ttl is older than output/tsv/ncbigene-refseq_genomic.tsv ## Convert output/tsv/ncbigene-refseq_genomic.tsv => output/ttl/ncbigene-refseq_genomic.ttl -< 2024-01-05T23:24:32 ncbigene-refseq_genomic +< 2024-01-13T07:50:22 ncbigene-refseq_genomic togoid-config config/ncbigene-refseq_genomic convert -> 2024-01-05T23:24:33 ncbigene-refseq_genomic +> 2024-01-13T07:50:24 ncbigene-refseq_genomic ### Update TTL for ncbigene-refseq_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_protein.ttl is older than output/tsv/ncbigene-refseq_protein.tsv ## Convert output/tsv/ncbigene-refseq_protein.tsv => output/ttl/ncbigene-refseq_protein.ttl -< 2024-01-05T23:24:33 ncbigene-refseq_protein +< 2024-01-13T07:50:24 ncbigene-refseq_protein togoid-config config/ncbigene-refseq_protein convert -> 2024-01-05T23:36:13 ncbigene-refseq_protein +> 2024-01-13T08:02:09 ncbigene-refseq_protein ### Update TTL for ncbigene-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_rna.ttl is older than output/tsv/ncbigene-refseq_rna.tsv ## Convert output/tsv/ncbigene-refseq_rna.tsv => output/ttl/ncbigene-refseq_rna.ttl -< 2024-01-05T23:36:13 ncbigene-refseq_rna +< 2024-01-13T08:02:09 ncbigene-refseq_rna togoid-config config/ncbigene-refseq_rna convert -> 2024-01-05T23:46:31 ncbigene-refseq_rna +> 2024-01-13T08:12:24 ncbigene-refseq_rna ### Update TTL for ncbigene-rgd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-rgd.ttl is older than output/tsv/ncbigene-rgd.tsv ## Convert output/tsv/ncbigene-rgd.tsv => output/ttl/ncbigene-rgd.ttl -< 2024-01-05T23:46:31 ncbigene-rgd +< 2024-01-13T08:12:24 ncbigene-rgd togoid-config config/ncbigene-rgd convert -> 2024-01-05T23:46:31 ncbigene-rgd +> 2024-01-13T08:12:25 ncbigene-rgd ### Update TTL for ncbigene-sgd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-sgd.ttl is older than output/tsv/ncbigene-sgd.tsv ## Convert output/tsv/ncbigene-sgd.tsv => output/ttl/ncbigene-sgd.ttl -< 2024-01-05T23:46:31 ncbigene-sgd +< 2024-01-13T08:12:25 ncbigene-sgd togoid-config config/ncbigene-sgd convert -> 2024-01-05T23:46:31 ncbigene-sgd +> 2024-01-13T08:12:25 ncbigene-sgd ### Update TTL for ncbigene-tair if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-tair.ttl is older than output/tsv/ncbigene-tair.tsv ## Convert output/tsv/ncbigene-tair.tsv => output/ttl/ncbigene-tair.ttl -< 2024-01-05T23:46:31 ncbigene-tair +< 2024-01-13T08:12:25 ncbigene-tair togoid-config config/ncbigene-tair convert -> 2024-01-05T23:46:32 ncbigene-tair +> 2024-01-13T08:12:26 ncbigene-tair ### Update TTL for ncbigene-taxonomy if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-taxonomy.ttl is older than output/tsv/ncbigene-taxonomy.tsv ## Convert output/tsv/ncbigene-taxonomy.tsv => output/ttl/ncbigene-taxonomy.ttl -< 2024-01-05T23:46:32 ncbigene-taxonomy +< 2024-01-13T08:12:26 ncbigene-taxonomy togoid-config config/ncbigene-taxonomy convert -> 2024-01-05T23:54:22 ncbigene-taxonomy +> 2024-01-13T08:20:09 ncbigene-taxonomy ### Update TTL for ncbigene-vgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-vgnc.ttl is older than output/tsv/ncbigene-vgnc.tsv ## Convert output/tsv/ncbigene-vgnc.tsv => output/ttl/ncbigene-vgnc.ttl -< 2024-01-05T23:54:22 ncbigene-vgnc +< 2024-01-13T08:20:09 ncbigene-vgnc togoid-config config/ncbigene-vgnc convert -> 2024-01-05T23:54:23 ncbigene-vgnc +> 2024-01-13T08:20:10 ncbigene-vgnc ### Update TTL for ncbigene-wormbase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-wormbase_gene.ttl is older than output/tsv/ncbigene-wormbase_gene.tsv ## Convert output/tsv/ncbigene-wormbase_gene.tsv => output/ttl/ncbigene-wormbase_gene.ttl -< 2024-01-05T23:54:23 ncbigene-wormbase_gene +< 2024-01-13T08:20:10 ncbigene-wormbase_gene togoid-config config/ncbigene-wormbase_gene convert -> 2024-01-05T23:54:24 ncbigene-wormbase_gene +> 2024-01-13T08:20:11 ncbigene-wormbase_gene ### Update TTL for ncbigene-xenbase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-xenbase_gene.ttl is older than output/tsv/ncbigene-xenbase_gene.tsv ## Convert output/tsv/ncbigene-xenbase_gene.tsv => output/ttl/ncbigene-xenbase_gene.ttl -< 2024-01-05T23:54:24 ncbigene-xenbase_gene +< 2024-01-13T08:20:11 ncbigene-xenbase_gene togoid-config config/ncbigene-xenbase_gene convert -> 2024-01-05T23:54:24 ncbigene-xenbase_gene +> 2024-01-13T08:20:12 ncbigene-xenbase_gene ### Update TTL for ncbigene-zfin_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-zfin_gene.ttl is older than output/tsv/ncbigene-zfin_gene.tsv ## Convert output/tsv/ncbigene-zfin_gene.tsv => output/ttl/ncbigene-zfin_gene.ttl -< 2024-01-05T23:54:24 ncbigene-zfin_gene +< 2024-01-13T08:20:12 ncbigene-zfin_gene togoid-config config/ncbigene-zfin_gene convert -> 2024-01-05T23:54:25 ncbigene-zfin_gene +> 2024-01-13T08:20:12 ncbigene-zfin_gene ### Update TTL for ncit_disease-ncit_tissue if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncit_disease-ncit_tissue.ttl is older than output/tsv/ncit_disease-ncit_tissue.tsv ## Convert output/tsv/ncit_disease-ncit_tissue.tsv => output/ttl/ncit_disease-ncit_tissue.ttl -< 2024-01-05T23:54:25 ncit_disease-ncit_tissue +< 2024-01-13T08:20:12 ncit_disease-ncit_tissue togoid-config config/ncit_disease-ncit_tissue convert -> 2024-01-05T23:54:25 ncit_disease-ncit_tissue +> 2024-01-13T08:20:13 ncit_disease-ncit_tissue ### Update TTL for oma_protein-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/oma_protein-ensembl_gene.ttl is newer than output/tsv/oma_protein-ensembl_gene.tsv # => Preserving output/ttl/oma_protein-ensembl_gene.ttl @@ -4727,81 +5222,81 @@ togoid-config config/ncit_disease-ncit_tissue convert ### Update TTL for orphanet_gene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-ensembl_gene.ttl is older than output/tsv/orphanet_gene-ensembl_gene.tsv ## Convert output/tsv/orphanet_gene-ensembl_gene.tsv => output/ttl/orphanet_gene-ensembl_gene.ttl -< 2024-01-05T23:54:25 orphanet_gene-ensembl_gene +< 2024-01-13T08:20:13 orphanet_gene-ensembl_gene togoid-config config/orphanet_gene-ensembl_gene convert -> 2024-01-05T23:54:25 orphanet_gene-ensembl_gene +> 2024-01-13T08:20:13 orphanet_gene-ensembl_gene ### Update TTL for orphanet_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-hgnc.ttl is older than output/tsv/orphanet_gene-hgnc.tsv ## Convert output/tsv/orphanet_gene-hgnc.tsv => output/ttl/orphanet_gene-hgnc.ttl -< 2024-01-05T23:54:25 orphanet_gene-hgnc +< 2024-01-13T08:20:13 orphanet_gene-hgnc togoid-config config/orphanet_gene-hgnc convert -> 2024-01-05T23:54:26 orphanet_gene-hgnc +> 2024-01-13T08:20:13 orphanet_gene-hgnc ### Update TTL for orphanet_gene-omim_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-omim_gene.ttl is older than output/tsv/orphanet_gene-omim_gene.tsv ## Convert output/tsv/orphanet_gene-omim_gene.tsv => output/ttl/orphanet_gene-omim_gene.ttl -< 2024-01-05T23:54:26 orphanet_gene-omim_gene +< 2024-01-13T08:20:13 orphanet_gene-omim_gene togoid-config config/orphanet_gene-omim_gene convert -> 2024-01-05T23:54:26 orphanet_gene-omim_gene +> 2024-01-13T08:20:14 orphanet_gene-omim_gene ### Update TTL for orphanet_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-uniprot.ttl is older than output/tsv/orphanet_gene-uniprot.tsv ## Convert output/tsv/orphanet_gene-uniprot.tsv => output/ttl/orphanet_gene-uniprot.ttl -< 2024-01-05T23:54:26 orphanet_gene-uniprot +< 2024-01-13T08:20:14 orphanet_gene-uniprot togoid-config config/orphanet_gene-uniprot convert -> 2024-01-05T23:54:26 orphanet_gene-uniprot +> 2024-01-13T08:20:14 orphanet_gene-uniprot ### Update TTL for orphanet_phenotype-meddra if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-meddra.ttl is older than output/tsv/orphanet_phenotype-meddra.tsv ## Convert output/tsv/orphanet_phenotype-meddra.tsv => output/ttl/orphanet_phenotype-meddra.ttl -< 2024-01-05T23:54:26 orphanet_phenotype-meddra +< 2024-01-13T08:20:14 orphanet_phenotype-meddra togoid-config config/orphanet_phenotype-meddra convert -> 2024-01-05T23:54:26 orphanet_phenotype-meddra +> 2024-01-13T08:20:14 orphanet_phenotype-meddra ### Update TTL for orphanet_phenotype-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-mesh.ttl is older than output/tsv/orphanet_phenotype-mesh.tsv ## Convert output/tsv/orphanet_phenotype-mesh.tsv => output/ttl/orphanet_phenotype-mesh.ttl -< 2024-01-05T23:54:26 orphanet_phenotype-mesh +< 2024-01-13T08:20:14 orphanet_phenotype-mesh togoid-config config/orphanet_phenotype-mesh convert -> 2024-01-05T23:54:27 orphanet_phenotype-mesh +> 2024-01-13T08:20:14 orphanet_phenotype-mesh ### Update TTL for orphanet_phenotype-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-omim_phenotype.ttl is older than output/tsv/orphanet_phenotype-omim_phenotype.tsv ## Convert output/tsv/orphanet_phenotype-omim_phenotype.tsv => output/ttl/orphanet_phenotype-omim_phenotype.ttl -< 2024-01-05T23:54:27 orphanet_phenotype-omim_phenotype +< 2024-01-13T08:20:14 orphanet_phenotype-omim_phenotype togoid-config config/orphanet_phenotype-omim_phenotype convert -> 2024-01-05T23:54:27 orphanet_phenotype-omim_phenotype +> 2024-01-13T08:20:15 orphanet_phenotype-omim_phenotype ### Update TTL for orphanet_phenotype-orphanet_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-orphanet_gene.ttl is older than output/tsv/orphanet_phenotype-orphanet_gene.tsv ## Convert output/tsv/orphanet_phenotype-orphanet_gene.tsv => output/ttl/orphanet_phenotype-orphanet_gene.ttl -< 2024-01-05T23:54:27 orphanet_phenotype-orphanet_gene +< 2024-01-13T08:20:15 orphanet_phenotype-orphanet_gene togoid-config config/orphanet_phenotype-orphanet_gene convert -> 2024-01-05T23:54:27 orphanet_phenotype-orphanet_gene +> 2024-01-13T08:20:15 orphanet_phenotype-orphanet_gene ### Update TTL for pdb-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-go.ttl is older than output/tsv/pdb-go.tsv ## Convert output/tsv/pdb-go.tsv => output/ttl/pdb-go.ttl -< 2024-01-05T23:54:27 pdb-go +< 2024-01-13T08:20:15 pdb-go togoid-config config/pdb-go convert -> 2024-01-05T23:54:39 pdb-go +> 2024-01-13T08:20:27 pdb-go ### Update TTL for pdb-interpro if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-interpro.ttl is older than output/tsv/pdb-interpro.tsv ## Convert output/tsv/pdb-interpro.tsv => output/ttl/pdb-interpro.ttl -< 2024-01-05T23:54:39 pdb-interpro +< 2024-01-13T08:20:27 pdb-interpro togoid-config config/pdb-interpro convert -> 2024-01-05T23:54:45 pdb-interpro +> 2024-01-13T08:20:33 pdb-interpro ### Update TTL for pdb-pdb_ccd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-pdb_ccd.ttl is older than output/tsv/pdb-pdb_ccd.tsv ## Convert output/tsv/pdb-pdb_ccd.tsv => output/ttl/pdb-pdb_ccd.ttl -< 2024-01-05T23:54:45 pdb-pdb_ccd +< 2024-01-13T08:20:33 pdb-pdb_ccd togoid-config config/pdb-pdb_ccd convert -> 2024-01-05T23:54:48 pdb-pdb_ccd +> 2024-01-13T08:20:37 pdb-pdb_ccd ### Update TTL for pdb-pfam if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-pfam.ttl is older than output/tsv/pdb-pfam.tsv ## Convert output/tsv/pdb-pfam.tsv => output/ttl/pdb-pfam.ttl -< 2024-01-05T23:54:48 pdb-pfam +< 2024-01-13T08:20:37 pdb-pfam togoid-config config/pdb-pfam convert -> 2024-01-05T23:54:51 pdb-pfam +> 2024-01-13T08:20:40 pdb-pfam ### Update TTL for pdb-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-uniprot.ttl is older than output/tsv/pdb-uniprot.tsv ## Convert output/tsv/pdb-uniprot.tsv => output/ttl/pdb-uniprot.ttl -< 2024-01-05T23:54:51 pdb-uniprot +< 2024-01-13T08:20:40 pdb-uniprot togoid-config config/pdb-uniprot convert -> 2024-01-05T23:54:54 pdb-uniprot +> 2024-01-13T08:20:42 pdb-uniprot ### Update TTL for prosite-prosite_prorule if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/prosite-prosite_prorule.ttl is newer than output/tsv/prosite-prosite_prorule.tsv # => Preserving output/ttl/prosite-prosite_prorule.ttl @@ -4811,141 +5306,141 @@ togoid-config config/pdb-uniprot convert ### Update TTL for pubchem_compound-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-chebi.ttl is older than output/tsv/pubchem_compound-chebi.tsv ## Convert output/tsv/pubchem_compound-chebi.tsv => output/ttl/pubchem_compound-chebi.ttl -< 2024-01-05T23:54:54 pubchem_compound-chebi +< 2024-01-13T08:20:42 pubchem_compound-chebi togoid-config config/pubchem_compound-chebi convert -> 2024-01-05T23:54:55 pubchem_compound-chebi +> 2024-01-13T08:20:44 pubchem_compound-chebi ### Update TTL for pubchem_compound-chembl_compound if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-chembl_compound.ttl is older than output/tsv/pubchem_compound-chembl_compound.tsv ## Convert output/tsv/pubchem_compound-chembl_compound.tsv => output/ttl/pubchem_compound-chembl_compound.ttl -< 2024-01-05T23:54:55 pubchem_compound-chembl_compound +< 2024-01-13T08:20:44 pubchem_compound-chembl_compound togoid-config config/pubchem_compound-chembl_compound convert -> 2024-01-05T23:55:14 pubchem_compound-chembl_compound +> 2024-01-13T08:21:03 pubchem_compound-chembl_compound ### Update TTL for pubchem_compound-drugbank if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-drugbank.ttl is older than output/tsv/pubchem_compound-drugbank.tsv ## Convert output/tsv/pubchem_compound-drugbank.tsv => output/ttl/pubchem_compound-drugbank.ttl -< 2024-01-05T23:55:14 pubchem_compound-drugbank +< 2024-01-13T08:21:03 pubchem_compound-drugbank togoid-config config/pubchem_compound-drugbank convert -> 2024-01-05T23:55:15 pubchem_compound-drugbank +> 2024-01-13T08:21:04 pubchem_compound-drugbank ### Update TTL for pubchem_compound-glytoucan if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-glytoucan.ttl is older than output/tsv/pubchem_compound-glytoucan.tsv ## Convert output/tsv/pubchem_compound-glytoucan.tsv => output/ttl/pubchem_compound-glytoucan.ttl -< 2024-01-05T23:55:15 pubchem_compound-glytoucan +< 2024-01-13T08:21:04 pubchem_compound-glytoucan togoid-config config/pubchem_compound-glytoucan convert -> 2024-01-05T23:55:15 pubchem_compound-glytoucan +> 2024-01-13T08:21:04 pubchem_compound-glytoucan ### Update TTL for pubchem_compound-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-inchi_key.ttl is older than output/tsv/pubchem_compound-inchi_key.tsv ## Convert output/tsv/pubchem_compound-inchi_key.tsv => output/ttl/pubchem_compound-inchi_key.ttl -< 2024-01-05T23:55:15 pubchem_compound-inchi_key +< 2024-01-13T08:21:04 pubchem_compound-inchi_key togoid-config config/pubchem_compound-inchi_key convert -> 2024-01-06T00:34:53 pubchem_compound-inchi_key +> 2024-01-13T09:00:36 pubchem_compound-inchi_key ### Update TTL for pubchem_pathway-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-ncbigene.ttl is older than output/tsv/pubchem_pathway-ncbigene.tsv ## Convert output/tsv/pubchem_pathway-ncbigene.tsv => output/ttl/pubchem_pathway-ncbigene.ttl -< 2024-01-06T00:34:53 pubchem_pathway-ncbigene +< 2024-01-13T09:00:36 pubchem_pathway-ncbigene togoid-config config/pubchem_pathway-ncbigene convert -> 2024-01-06T00:34:54 pubchem_pathway-ncbigene +> 2024-01-13T09:00:38 pubchem_pathway-ncbigene ### Update TTL for pubchem_pathway-pathbank if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-pathbank.ttl is older than output/tsv/pubchem_pathway-pathbank.tsv ## Convert output/tsv/pubchem_pathway-pathbank.tsv => output/ttl/pubchem_pathway-pathbank.ttl -< 2024-01-06T00:34:54 pubchem_pathway-pathbank +< 2024-01-13T09:00:38 pubchem_pathway-pathbank togoid-config config/pubchem_pathway-pathbank convert -> 2024-01-06T00:34:54 pubchem_pathway-pathbank +> 2024-01-13T09:00:39 pubchem_pathway-pathbank ### Update TTL for pubchem_pathway-pubchem_compound if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-pubchem_compound.ttl is older than output/tsv/pubchem_pathway-pubchem_compound.tsv ## Convert output/tsv/pubchem_pathway-pubchem_compound.tsv => output/ttl/pubchem_pathway-pubchem_compound.ttl -< 2024-01-06T00:34:54 pubchem_pathway-pubchem_compound +< 2024-01-13T09:00:39 pubchem_pathway-pubchem_compound togoid-config config/pubchem_pathway-pubchem_compound convert -> 2024-01-06T00:35:04 pubchem_pathway-pubchem_compound +> 2024-01-13T09:00:49 pubchem_pathway-pubchem_compound ### Update TTL for pubchem_pathway-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-reactome_pathway.ttl is older than output/tsv/pubchem_pathway-reactome_pathway.tsv ## Convert output/tsv/pubchem_pathway-reactome_pathway.tsv => output/ttl/pubchem_pathway-reactome_pathway.ttl -< 2024-01-06T00:35:04 pubchem_pathway-reactome_pathway +< 2024-01-13T09:00:49 pubchem_pathway-reactome_pathway togoid-config config/pubchem_pathway-reactome_pathway convert -> 2024-01-06T00:35:05 pubchem_pathway-reactome_pathway +> 2024-01-13T09:00:49 pubchem_pathway-reactome_pathway ### Update TTL for pubchem_pathway-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-uniprot.ttl is older than output/tsv/pubchem_pathway-uniprot.tsv ## Convert output/tsv/pubchem_pathway-uniprot.tsv => output/ttl/pubchem_pathway-uniprot.ttl -< 2024-01-06T00:35:05 pubchem_pathway-uniprot +< 2024-01-13T09:00:49 pubchem_pathway-uniprot togoid-config config/pubchem_pathway-uniprot convert -> 2024-01-06T00:35:09 pubchem_pathway-uniprot +> 2024-01-13T09:00:54 pubchem_pathway-uniprot ### Update TTL for pubchem_pathway-wikipathways if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-wikipathways.ttl is older than output/tsv/pubchem_pathway-wikipathways.tsv ## Convert output/tsv/pubchem_pathway-wikipathways.tsv => output/ttl/pubchem_pathway-wikipathways.ttl -< 2024-01-06T00:35:09 pubchem_pathway-wikipathways +< 2024-01-13T09:00:54 pubchem_pathway-wikipathways togoid-config config/pubchem_pathway-wikipathways convert -> 2024-01-06T00:35:10 pubchem_pathway-wikipathways +> 2024-01-13T09:00:55 pubchem_pathway-wikipathways ### Update TTL for reactome_pathway-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-chebi.ttl is older than output/tsv/reactome_pathway-chebi.tsv ## Convert output/tsv/reactome_pathway-chebi.tsv => output/ttl/reactome_pathway-chebi.ttl -< 2024-01-06T00:35:10 reactome_pathway-chebi +< 2024-01-13T09:00:55 reactome_pathway-chebi togoid-config config/reactome_pathway-chebi convert -> 2024-01-06T00:35:12 reactome_pathway-chebi +> 2024-01-13T09:00:57 reactome_pathway-chebi ### Update TTL for reactome_pathway-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-go.ttl is older than output/tsv/reactome_pathway-go.tsv ## Convert output/tsv/reactome_pathway-go.tsv => output/ttl/reactome_pathway-go.ttl -< 2024-01-06T00:35:12 reactome_pathway-go +< 2024-01-13T09:00:57 reactome_pathway-go togoid-config config/reactome_pathway-go convert -> 2024-01-06T00:35:12 reactome_pathway-go +> 2024-01-13T09:00:57 reactome_pathway-go ### Update TTL for reactome_pathway-iuphar_ligand if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-iuphar_ligand.ttl is older than output/tsv/reactome_pathway-iuphar_ligand.tsv ## Convert output/tsv/reactome_pathway-iuphar_ligand.tsv => output/ttl/reactome_pathway-iuphar_ligand.ttl -< 2024-01-06T00:35:12 reactome_pathway-iuphar_ligand +< 2024-01-13T09:00:57 reactome_pathway-iuphar_ligand togoid-config config/reactome_pathway-iuphar_ligand convert -> 2024-01-06T00:35:13 reactome_pathway-iuphar_ligand +> 2024-01-13T09:00:58 reactome_pathway-iuphar_ligand ### Update TTL for reactome_pathway-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-mirbase.ttl is older than output/tsv/reactome_pathway-mirbase.tsv ## Convert output/tsv/reactome_pathway-mirbase.tsv => output/ttl/reactome_pathway-mirbase.ttl -< 2024-01-06T00:35:13 reactome_pathway-mirbase +< 2024-01-13T09:00:58 reactome_pathway-mirbase togoid-config config/reactome_pathway-mirbase convert -> 2024-01-06T00:35:13 reactome_pathway-mirbase +> 2024-01-13T09:00:58 reactome_pathway-mirbase ### Update TTL for reactome_pathway-reactome_reaction if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-reactome_reaction.ttl is older than output/tsv/reactome_pathway-reactome_reaction.tsv ## Convert output/tsv/reactome_pathway-reactome_reaction.tsv => output/ttl/reactome_pathway-reactome_reaction.ttl -< 2024-01-06T00:35:13 reactome_pathway-reactome_reaction +< 2024-01-13T09:00:58 reactome_pathway-reactome_reaction togoid-config config/reactome_pathway-reactome_reaction convert -> 2024-01-06T00:35:16 reactome_pathway-reactome_reaction +> 2024-01-13T09:01:02 reactome_pathway-reactome_reaction ### Update TTL for reactome_pathway-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-uniprot.ttl is older than output/tsv/reactome_pathway-uniprot.tsv ## Convert output/tsv/reactome_pathway-uniprot.tsv => output/ttl/reactome_pathway-uniprot.ttl -< 2024-01-06T00:35:16 reactome_pathway-uniprot +< 2024-01-13T09:01:02 reactome_pathway-uniprot togoid-config config/reactome_pathway-uniprot convert -> 2024-01-06T00:35:23 reactome_pathway-uniprot +> 2024-01-13T09:01:09 reactome_pathway-uniprot ### Update TTL for reactome_reaction-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-chebi.ttl is older than output/tsv/reactome_reaction-chebi.tsv ## Convert output/tsv/reactome_reaction-chebi.tsv => output/ttl/reactome_reaction-chebi.ttl -< 2024-01-06T00:35:23 reactome_reaction-chebi +< 2024-01-13T09:01:09 reactome_reaction-chebi togoid-config config/reactome_reaction-chebi convert -> 2024-01-06T00:35:25 reactome_reaction-chebi +> 2024-01-13T09:01:11 reactome_reaction-chebi ### Update TTL for reactome_reaction-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-go.ttl is older than output/tsv/reactome_reaction-go.tsv ## Convert output/tsv/reactome_reaction-go.tsv => output/ttl/reactome_reaction-go.ttl -< 2024-01-06T00:35:25 reactome_reaction-go +< 2024-01-13T09:01:11 reactome_reaction-go togoid-config config/reactome_reaction-go convert -> 2024-01-06T00:35:25 reactome_reaction-go +> 2024-01-13T09:01:11 reactome_reaction-go ### Update TTL for reactome_reaction-iuphar_ligand if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-iuphar_ligand.ttl is older than output/tsv/reactome_reaction-iuphar_ligand.tsv ## Convert output/tsv/reactome_reaction-iuphar_ligand.tsv => output/ttl/reactome_reaction-iuphar_ligand.ttl -< 2024-01-06T00:35:25 reactome_reaction-iuphar_ligand +< 2024-01-13T09:01:11 reactome_reaction-iuphar_ligand togoid-config config/reactome_reaction-iuphar_ligand convert -> 2024-01-06T00:35:26 reactome_reaction-iuphar_ligand +> 2024-01-13T09:01:11 reactome_reaction-iuphar_ligand ### Update TTL for reactome_reaction-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-mirbase.ttl is older than output/tsv/reactome_reaction-mirbase.tsv ## Convert output/tsv/reactome_reaction-mirbase.tsv => output/ttl/reactome_reaction-mirbase.ttl -< 2024-01-06T00:35:26 reactome_reaction-mirbase +< 2024-01-13T09:01:11 reactome_reaction-mirbase togoid-config config/reactome_reaction-mirbase convert -> 2024-01-06T00:35:26 reactome_reaction-mirbase +> 2024-01-13T09:01:12 reactome_reaction-mirbase ### Update TTL for reactome_reaction-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-uniprot.ttl is older than output/tsv/reactome_reaction-uniprot.tsv ## Convert output/tsv/reactome_reaction-uniprot.tsv => output/ttl/reactome_reaction-uniprot.ttl -< 2024-01-06T00:35:26 reactome_reaction-uniprot +< 2024-01-13T09:01:12 reactome_reaction-uniprot togoid-config config/reactome_reaction-uniprot convert -> 2024-01-06T00:35:31 reactome_reaction-uniprot +> 2024-01-13T09:01:17 reactome_reaction-uniprot ### Update TTL for refseq_protein-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/refseq_protein-uniprot.ttl is older than output/tsv/refseq_protein-uniprot.tsv ## Convert output/tsv/refseq_protein-uniprot.tsv => output/ttl/refseq_protein-uniprot.ttl -< 2024-01-06T00:35:31 refseq_protein-uniprot +< 2024-01-13T09:01:17 refseq_protein-uniprot togoid-config config/refseq_protein-uniprot convert -> 2024-01-06T01:38:40 refseq_protein-uniprot +> 2024-01-13T10:02:32 refseq_protein-uniprot ### Update TTL for refseq_rna-dbsnp if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/refseq_rna-dbsnp.ttl is newer than output/tsv/refseq_rna-dbsnp.tsv # => Preserving output/ttl/refseq_rna-dbsnp.ttl @@ -4988,186 +5483,186 @@ togoid-config config/refseq_protein-uniprot convert ### Update TTL for sra_accession-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-bioproject.ttl is older than output/tsv/sra_accession-bioproject.tsv ## Convert output/tsv/sra_accession-bioproject.tsv => output/ttl/sra_accession-bioproject.ttl -< 2024-01-06T01:38:41 sra_accession-bioproject +< 2024-01-13T10:02:33 sra_accession-bioproject togoid-config config/sra_accession-bioproject convert -> 2024-01-06T01:38:46 sra_accession-bioproject +> 2024-01-13T10:02:37 sra_accession-bioproject ### Update TTL for sra_accession-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-biosample.ttl is older than output/tsv/sra_accession-biosample.tsv ## Convert output/tsv/sra_accession-biosample.tsv => output/ttl/sra_accession-biosample.ttl -< 2024-01-06T01:38:46 sra_accession-biosample +< 2024-01-13T10:02:37 sra_accession-biosample togoid-config config/sra_accession-biosample convert -> 2024-01-06T01:42:40 sra_accession-biosample +> 2024-01-13T10:07:14 sra_accession-biosample ### Update TTL for sra_accession-sra_analysis if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_analysis.ttl is older than output/tsv/sra_accession-sra_analysis.tsv ## Convert output/tsv/sra_accession-sra_analysis.tsv => output/ttl/sra_accession-sra_analysis.ttl -< 2024-01-06T01:42:40 sra_accession-sra_analysis +< 2024-01-13T10:07:14 sra_accession-sra_analysis togoid-config config/sra_accession-sra_analysis convert -> 2024-01-06T01:42:43 sra_accession-sra_analysis +> 2024-01-13T10:07:17 sra_accession-sra_analysis ### Update TTL for sra_accession-sra_experiment if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_experiment.ttl is older than output/tsv/sra_accession-sra_experiment.tsv ## Convert output/tsv/sra_accession-sra_experiment.tsv => output/ttl/sra_accession-sra_experiment.ttl -< 2024-01-06T01:42:43 sra_accession-sra_experiment +< 2024-01-13T10:07:17 sra_accession-sra_experiment togoid-config config/sra_accession-sra_experiment convert -> 2024-01-06T01:47:08 sra_accession-sra_experiment +> 2024-01-13T10:11:41 sra_accession-sra_experiment ### Update TTL for sra_accession-sra_project if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_project.ttl is older than output/tsv/sra_accession-sra_project.tsv ## Convert output/tsv/sra_accession-sra_project.tsv => output/ttl/sra_accession-sra_project.ttl -< 2024-01-06T01:47:08 sra_accession-sra_project +< 2024-01-13T10:11:41 sra_accession-sra_project togoid-config config/sra_accession-sra_project convert -> 2024-01-06T01:47:13 sra_accession-sra_project +> 2024-01-13T10:11:45 sra_accession-sra_project ### Update TTL for sra_accession-sra_run if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_run.ttl is older than output/tsv/sra_accession-sra_run.tsv ## Convert output/tsv/sra_accession-sra_run.tsv => output/ttl/sra_accession-sra_run.ttl -< 2024-01-06T01:47:13 sra_accession-sra_run +< 2024-01-13T10:11:45 sra_accession-sra_run togoid-config config/sra_accession-sra_run convert -> 2024-01-06T01:51:45 sra_accession-sra_run +> 2024-01-13T10:17:23 sra_accession-sra_run ### Update TTL for sra_accession-sra_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_sample.ttl is older than output/tsv/sra_accession-sra_sample.tsv ## Convert output/tsv/sra_accession-sra_sample.tsv => output/ttl/sra_accession-sra_sample.ttl -< 2024-01-06T01:51:45 sra_accession-sra_sample +< 2024-01-13T10:17:23 sra_accession-sra_sample togoid-config config/sra_accession-sra_sample convert -> 2024-01-06T01:57:02 sra_accession-sra_sample +> 2024-01-13T10:22:11 sra_accession-sra_sample ### Update TTL for sra_experiment-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-bioproject.ttl is older than output/tsv/sra_experiment-bioproject.tsv ## Convert output/tsv/sra_experiment-bioproject.tsv => output/ttl/sra_experiment-bioproject.ttl -< 2024-01-06T01:57:02 sra_experiment-bioproject +< 2024-01-13T10:22:11 sra_experiment-bioproject togoid-config config/sra_experiment-bioproject convert -> 2024-01-06T02:00:57 sra_experiment-bioproject +> 2024-01-13T10:25:58 sra_experiment-bioproject ### Update TTL for sra_experiment-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-biosample.ttl is older than output/tsv/sra_experiment-biosample.tsv ## Convert output/tsv/sra_experiment-biosample.tsv => output/ttl/sra_experiment-biosample.ttl -< 2024-01-06T02:00:57 sra_experiment-biosample +< 2024-01-13T10:25:58 sra_experiment-biosample togoid-config config/sra_experiment-biosample convert -> 2024-01-06T02:05:06 sra_experiment-biosample +> 2024-01-13T10:30:25 sra_experiment-biosample ### Update TTL for sra_experiment-sra_project if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-sra_project.ttl is older than output/tsv/sra_experiment-sra_project.tsv ## Convert output/tsv/sra_experiment-sra_project.tsv => output/ttl/sra_experiment-sra_project.ttl -< 2024-01-06T02:05:06 sra_experiment-sra_project +< 2024-01-13T10:30:25 sra_experiment-sra_project togoid-config config/sra_experiment-sra_project convert -> 2024-01-06T02:09:56 sra_experiment-sra_project +> 2024-01-13T10:34:52 sra_experiment-sra_project ### Update TTL for sra_experiment-sra_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-sra_sample.ttl is older than output/tsv/sra_experiment-sra_sample.tsv ## Convert output/tsv/sra_experiment-sra_sample.tsv => output/ttl/sra_experiment-sra_sample.ttl -< 2024-01-06T02:09:56 sra_experiment-sra_sample +< 2024-01-13T10:34:52 sra_experiment-sra_sample togoid-config config/sra_experiment-sra_sample convert -> 2024-01-06T02:13:44 sra_experiment-sra_sample +> 2024-01-13T10:38:32 sra_experiment-sra_sample ### Update TTL for sra_project-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_project-bioproject.ttl is older than output/tsv/sra_project-bioproject.tsv ## Convert output/tsv/sra_project-bioproject.tsv => output/ttl/sra_project-bioproject.ttl -< 2024-01-06T02:13:44 sra_project-bioproject +< 2024-01-13T10:38:32 sra_project-bioproject togoid-config config/sra_project-bioproject convert -> 2024-01-06T02:13:48 sra_project-bioproject +> 2024-01-13T10:38:37 sra_project-bioproject ### Update TTL for sra_run-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-bioproject.ttl is older than output/tsv/sra_run-bioproject.tsv ## Convert output/tsv/sra_run-bioproject.tsv => output/ttl/sra_run-bioproject.ttl -< 2024-01-06T02:13:48 sra_run-bioproject +< 2024-01-13T10:38:37 sra_run-bioproject togoid-config config/sra_run-bioproject convert -> 2024-01-06T02:17:43 sra_run-bioproject +> 2024-01-13T10:42:33 sra_run-bioproject ### Update TTL for sra_run-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-biosample.ttl is older than output/tsv/sra_run-biosample.tsv ## Convert output/tsv/sra_run-biosample.tsv => output/ttl/sra_run-biosample.ttl -< 2024-01-06T02:17:43 sra_run-biosample +< 2024-01-13T10:42:33 sra_run-biosample togoid-config config/sra_run-biosample convert -> 2024-01-06T02:21:59 sra_run-biosample +> 2024-01-13T10:47:02 sra_run-biosample ### Update TTL for sra_run-sra_experiment if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-sra_experiment.ttl is older than output/tsv/sra_run-sra_experiment.tsv ## Convert output/tsv/sra_run-sra_experiment.tsv => output/ttl/sra_run-sra_experiment.ttl -< 2024-01-06T02:21:59 sra_run-sra_experiment +< 2024-01-13T10:47:02 sra_run-sra_experiment togoid-config config/sra_run-sra_experiment convert -> 2024-01-06T02:26:53 sra_run-sra_experiment +> 2024-01-13T10:52:08 sra_run-sra_experiment ### Update TTL for sra_run-sra_project if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-sra_project.ttl is older than output/tsv/sra_run-sra_project.tsv ## Convert output/tsv/sra_run-sra_project.tsv => output/ttl/sra_run-sra_project.ttl -< 2024-01-06T02:26:53 sra_run-sra_project +< 2024-01-13T10:52:08 sra_run-sra_project togoid-config config/sra_run-sra_project convert -> 2024-01-06T02:31:17 sra_run-sra_project +> 2024-01-13T10:56:37 sra_run-sra_project ### Update TTL for sra_run-sra_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-sra_sample.ttl is older than output/tsv/sra_run-sra_sample.tsv ## Convert output/tsv/sra_run-sra_sample.tsv => output/ttl/sra_run-sra_sample.ttl -< 2024-01-06T02:31:17 sra_run-sra_sample +< 2024-01-13T10:56:37 sra_run-sra_sample togoid-config config/sra_run-sra_sample convert -> 2024-01-06T02:35:38 sra_run-sra_sample +> 2024-01-13T11:01:06 sra_run-sra_sample ### Update TTL for sra_sample-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_sample-biosample.ttl is older than output/tsv/sra_sample-biosample.tsv ## Convert output/tsv/sra_sample-biosample.tsv => output/ttl/sra_sample-biosample.ttl -< 2024-01-06T02:35:38 sra_sample-biosample +< 2024-01-13T11:01:06 sra_sample-biosample togoid-config config/sra_sample-biosample convert -> 2024-01-06T02:39:41 sra_sample-biosample +> 2024-01-13T11:05:13 sra_sample-biosample ### Update TTL for swisslipids-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-chebi.ttl is older than output/tsv/swisslipids-chebi.tsv ## Convert output/tsv/swisslipids-chebi.tsv => output/ttl/swisslipids-chebi.ttl -< 2024-01-06T02:39:41 swisslipids-chebi +< 2024-01-13T11:05:13 swisslipids-chebi togoid-config config/swisslipids-chebi convert -> 2024-01-06T02:39:41 swisslipids-chebi +> 2024-01-13T11:05:14 swisslipids-chebi ### Update TTL for swisslipids-hmdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-hmdb.ttl is older than output/tsv/swisslipids-hmdb.tsv ## Convert output/tsv/swisslipids-hmdb.tsv => output/ttl/swisslipids-hmdb.ttl -< 2024-01-06T02:39:41 swisslipids-hmdb +< 2024-01-13T11:05:14 swisslipids-hmdb togoid-config config/swisslipids-hmdb convert -> 2024-01-06T02:39:41 swisslipids-hmdb +> 2024-01-13T11:05:14 swisslipids-hmdb ### Update TTL for swisslipids-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-inchi_key.ttl is older than output/tsv/swisslipids-inchi_key.tsv ## Convert output/tsv/swisslipids-inchi_key.tsv => output/ttl/swisslipids-inchi_key.ttl -< 2024-01-06T02:39:41 swisslipids-inchi_key +< 2024-01-13T11:05:14 swisslipids-inchi_key togoid-config config/swisslipids-inchi_key convert -> 2024-01-06T02:39:47 swisslipids-inchi_key +> 2024-01-13T11:05:20 swisslipids-inchi_key ### Update TTL for taxonomy-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/taxonomy-pubmed.ttl is older than output/tsv/taxonomy-pubmed.tsv ## Convert output/tsv/taxonomy-pubmed.tsv => output/ttl/taxonomy-pubmed.ttl -< 2024-01-06T02:39:47 taxonomy-pubmed +< 2024-01-13T11:05:20 taxonomy-pubmed togoid-config config/taxonomy-pubmed convert -> 2024-01-06T02:39:47 taxonomy-pubmed +> 2024-01-13T11:05:21 taxonomy-pubmed ### Update TTL for togovar-clinvar if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/togovar-clinvar.ttl is newer than output/tsv/togovar-clinvar.tsv # => Preserving output/ttl/togovar-clinvar.ttl ### Update TTL for togovar-dbsnp if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-dbsnp.ttl is older than output/tsv/togovar-dbsnp.tsv ## Convert output/tsv/togovar-dbsnp.tsv => output/ttl/togovar-dbsnp.ttl -< 2024-01-06T02:39:48 togovar-dbsnp +< 2024-01-13T11:05:21 togovar-dbsnp togoid-config config/togovar-dbsnp convert -> 2024-01-06T02:51:57 togovar-dbsnp +> 2024-01-13T11:19:29 togovar-dbsnp ### Update TTL for togovar-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-ensembl_gene.ttl is older than output/tsv/togovar-ensembl_gene.tsv ## Convert output/tsv/togovar-ensembl_gene.tsv => output/ttl/togovar-ensembl_gene.ttl -< 2024-01-06T02:51:57 togovar-ensembl_gene +< 2024-01-13T11:19:29 togovar-ensembl_gene togoid-config config/togovar-ensembl_gene convert -> 2024-01-06T03:08:39 togovar-ensembl_gene +> 2024-01-13T11:36:28 togovar-ensembl_gene ### Update TTL for togovar-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-ensembl_transcript.ttl is older than output/tsv/togovar-ensembl_transcript.tsv ## Convert output/tsv/togovar-ensembl_transcript.tsv => output/ttl/togovar-ensembl_transcript.ttl -< 2024-01-06T03:08:39 togovar-ensembl_transcript +< 2024-01-13T11:36:28 togovar-ensembl_transcript togoid-config config/togovar-ensembl_transcript convert -> 2024-01-06T05:40:06 togovar-ensembl_transcript +> 2024-01-13T14:11:16 togovar-ensembl_transcript ### Update TTL for togovar-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-hgnc.ttl is older than output/tsv/togovar-hgnc.tsv ## Convert output/tsv/togovar-hgnc.tsv => output/ttl/togovar-hgnc.ttl -< 2024-01-06T05:40:06 togovar-hgnc +< 2024-01-13T14:11:16 togovar-hgnc togoid-config config/togovar-hgnc convert -> 2024-01-06T05:49:11 togovar-hgnc +> 2024-01-13T14:20:39 togovar-hgnc ### Update TTL for togovar-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-ncbigene.ttl is older than output/tsv/togovar-ncbigene.tsv ## Convert output/tsv/togovar-ncbigene.tsv => output/ttl/togovar-ncbigene.ttl -< 2024-01-06T05:49:11 togovar-ncbigene +< 2024-01-13T14:20:39 togovar-ncbigene togoid-config config/togovar-ncbigene convert -> 2024-01-06T05:58:45 togovar-ncbigene +> 2024-01-13T14:29:38 togovar-ncbigene ### Update TTL for togovar-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-pubmed.ttl is older than output/tsv/togovar-pubmed.tsv ## Convert output/tsv/togovar-pubmed.tsv => output/ttl/togovar-pubmed.ttl -< 2024-01-06T05:58:45 togovar-pubmed +< 2024-01-13T14:29:38 togovar-pubmed togoid-config config/togovar-pubmed convert -> 2024-01-06T05:58:50 togovar-pubmed +> 2024-01-13T14:29:44 togovar-pubmed ### Update TTL for togovar-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-refseq_rna.ttl is older than output/tsv/togovar-refseq_rna.tsv ## Convert output/tsv/togovar-refseq_rna.tsv => output/ttl/togovar-refseq_rna.ttl -< 2024-01-06T05:58:50 togovar-refseq_rna +< 2024-01-13T14:29:44 togovar-refseq_rna togoid-config config/togovar-refseq_rna convert -> 2024-01-06T06:42:50 togovar-refseq_rna +> 2024-01-13T15:15:25 togovar-refseq_rna ### Update TTL for uberon-ncit_tissue if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uberon-ncit_tissue.ttl is older than output/tsv/uberon-ncit_tissue.tsv ## Convert output/tsv/uberon-ncit_tissue.tsv => output/ttl/uberon-ncit_tissue.ttl -< 2024-01-06T06:42:50 uberon-ncit_tissue +< 2024-01-13T15:15:25 uberon-ncit_tissue togoid-config config/uberon-ncit_tissue convert -> 2024-01-06T06:42:51 uberon-ncit_tissue +> 2024-01-13T15:15:25 uberon-ncit_tissue ### Update TTL for uniprot-chembl_target if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/uniprot-chembl_target.ttl is newer than output/tsv/uniprot-chembl_target.tsv # => Preserving output/ttl/uniprot-chembl_target.ttl @@ -5228,68 +5723,68 @@ togoid-config config/uberon-ncit_tissue convert ### Update TTL for uniprot_reference_proteome-assembly_insdc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uniprot_reference_proteome-assembly_insdc.ttl is older than output/tsv/uniprot_reference_proteome-assembly_insdc.tsv ## Convert output/tsv/uniprot_reference_proteome-assembly_insdc.tsv => output/ttl/uniprot_reference_proteome-assembly_insdc.ttl -< 2024-01-06T06:42:51 uniprot_reference_proteome-assembly_insdc +< 2024-01-13T15:15:25 uniprot_reference_proteome-assembly_insdc togoid-config config/uniprot_reference_proteome-assembly_insdc convert -> 2024-01-06T06:42:55 uniprot_reference_proteome-assembly_insdc +> 2024-01-13T15:15:29 uniprot_reference_proteome-assembly_insdc ### Update TTL for uniprot_reference_proteome-assembly_refseq if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uniprot_reference_proteome-assembly_refseq.ttl is older than output/tsv/uniprot_reference_proteome-assembly_refseq.tsv ## Convert output/tsv/uniprot_reference_proteome-assembly_refseq.tsv => output/ttl/uniprot_reference_proteome-assembly_refseq.ttl -< 2024-01-06T06:42:55 uniprot_reference_proteome-assembly_refseq +< 2024-01-13T15:15:29 uniprot_reference_proteome-assembly_refseq togoid-config config/uniprot_reference_proteome-assembly_refseq convert -> 2024-01-06T06:42:55 uniprot_reference_proteome-assembly_refseq +> 2024-01-13T15:15:30 uniprot_reference_proteome-assembly_refseq ### Update TTL for uniprot_reference_proteome-taxonomy if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uniprot_reference_proteome-taxonomy.ttl is older than output/tsv/uniprot_reference_proteome-taxonomy.tsv ## Convert output/tsv/uniprot_reference_proteome-taxonomy.tsv => output/ttl/uniprot_reference_proteome-taxonomy.ttl -< 2024-01-06T06:42:55 uniprot_reference_proteome-taxonomy +< 2024-01-13T15:15:30 uniprot_reference_proteome-taxonomy togoid-config config/uniprot_reference_proteome-taxonomy convert -> 2024-01-06T06:43:00 uniprot_reference_proteome-taxonomy +> 2024-01-13T15:15:34 uniprot_reference_proteome-taxonomy ### Update TTL for wikipathways-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-chebi.ttl is older than output/tsv/wikipathways-chebi.tsv ## Convert output/tsv/wikipathways-chebi.tsv => output/ttl/wikipathways-chebi.ttl -< 2024-01-06T06:43:00 wikipathways-chebi +< 2024-01-13T15:15:34 wikipathways-chebi togoid-config config/wikipathways-chebi convert -> 2024-01-06T06:43:00 wikipathways-chebi +> 2024-01-13T15:15:35 wikipathways-chebi ### Update TTL for wikipathways-doid if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-doid.ttl is older than output/tsv/wikipathways-doid.tsv ## Convert output/tsv/wikipathways-doid.tsv => output/ttl/wikipathways-doid.ttl -< 2024-01-06T06:43:00 wikipathways-doid +< 2024-01-13T15:15:35 wikipathways-doid togoid-config config/wikipathways-doid convert -> 2024-01-06T06:43:00 wikipathways-doid +> 2024-01-13T15:15:35 wikipathways-doid ### Update TTL for wikipathways-hmdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-hmdb.ttl is older than output/tsv/wikipathways-hmdb.tsv ## Convert output/tsv/wikipathways-hmdb.tsv => output/ttl/wikipathways-hmdb.ttl -< 2024-01-06T06:43:00 wikipathways-hmdb +< 2024-01-13T15:15:35 wikipathways-hmdb togoid-config config/wikipathways-hmdb convert -> 2024-01-06T06:43:01 wikipathways-hmdb +> 2024-01-13T15:15:35 wikipathways-hmdb ### Update TTL for wikipathways-lipidmaps if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-lipidmaps.ttl is older than output/tsv/wikipathways-lipidmaps.tsv ## Convert output/tsv/wikipathways-lipidmaps.tsv => output/ttl/wikipathways-lipidmaps.ttl -< 2024-01-06T06:43:01 wikipathways-lipidmaps +< 2024-01-13T15:15:35 wikipathways-lipidmaps togoid-config config/wikipathways-lipidmaps convert -> 2024-01-06T06:43:01 wikipathways-lipidmaps +> 2024-01-13T15:15:36 wikipathways-lipidmaps ### Update TTL for wikipathways-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-ncbigene.ttl is older than output/tsv/wikipathways-ncbigene.tsv ## Convert output/tsv/wikipathways-ncbigene.tsv => output/ttl/wikipathways-ncbigene.ttl -< 2024-01-06T06:43:01 wikipathways-ncbigene +< 2024-01-13T15:15:36 wikipathways-ncbigene togoid-config config/wikipathways-ncbigene convert -> 2024-01-06T06:43:02 wikipathways-ncbigene +> 2024-01-13T15:15:36 wikipathways-ncbigene ### Update TTL for wikipathways-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-uniprot.ttl is older than output/tsv/wikipathways-uniprot.tsv ## Convert output/tsv/wikipathways-uniprot.tsv => output/ttl/wikipathways-uniprot.ttl -< 2024-01-06T06:43:02 wikipathways-uniprot +< 2024-01-13T15:15:36 wikipathways-uniprot togoid-config config/wikipathways-uniprot convert -> 2024-01-06T06:43:02 wikipathways-uniprot +> 2024-01-13T15:15:36 wikipathways-uniprot Rule for TTL (output/ttl/bioproject-biosample.ttl) ------------------------------ Investigating output/ttl/bioproject-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:02:35 +0900 +timestamp: 2024-01-13 05:23:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/bioproject-biosample.tsv (2024-01-05 17:52:16 +0900) -latest-prerequisite time: 2024-01-05 17:52:16 +0900 +--output/tsv/bioproject-biosample.tsv (2024-01-12 17:50:18 +0900) +latest-prerequisite time: 2024-01-12 17:50:18 +0900 ................................ Rule for TTL (output/ttl/bioproject-geo_series.ttl) @@ -5297,12 +5792,12 @@ Rule for TTL (output/ttl/bioproject-geo_series.ttl) Investigating output/ttl/bioproject-geo_series.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:02:37 +0900 +timestamp: 2024-01-13 05:23:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/bioproject-geo_series.tsv (2024-01-05 17:52:18 +0900) -latest-prerequisite time: 2024-01-05 17:52:18 +0900 +--output/tsv/bioproject-geo_series.tsv (2024-01-12 17:50:20 +0900) +latest-prerequisite time: 2024-01-12 17:50:20 +0900 ................................ Rule for TTL (output/ttl/bioproject-pubmed.ttl) @@ -5310,12 +5805,12 @@ Rule for TTL (output/ttl/bioproject-pubmed.ttl) Investigating output/ttl/bioproject-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:02:39 +0900 +timestamp: 2024-01-13 05:23:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/bioproject-pubmed.tsv (2024-01-05 17:52:19 +0900) -latest-prerequisite time: 2024-01-05 17:52:19 +0900 +--output/tsv/bioproject-pubmed.tsv (2024-01-12 17:50:21 +0900) +latest-prerequisite time: 2024-01-12 17:50:21 +0900 ................................ Rule for TTL (output/ttl/bioproject_umbrella-bioproject.ttl) @@ -5323,12 +5818,12 @@ Rule for TTL (output/ttl/bioproject_umbrella-bioproject.ttl) Investigating output/ttl/bioproject_umbrella-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:02:40 +0900 +timestamp: 2024-01-13 05:23:22 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/bioproject_umbrella-bioproject.tsv (2024-01-05 17:52:19 +0900) -latest-prerequisite time: 2024-01-05 17:52:19 +0900 +--output/tsv/bioproject_umbrella-bioproject.tsv (2024-01-12 17:50:21 +0900) +latest-prerequisite time: 2024-01-12 17:50:21 +0900 ................................ Rule for TTL (output/ttl/cellosaurus-ncit_disease.ttl) @@ -5401,12 +5896,12 @@ Rule for TTL (output/ttl/ensembl_gene-affy_probeset.ttl) Investigating output/ttl/ensembl_gene-affy_probeset.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:04:33 +0900 +timestamp: 2024-01-13 05:25:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ensembl_gene-affy_probeset.tsv (2024-01-05 18:10:06 +0900) -latest-prerequisite time: 2024-01-05 18:10:06 +0900 +--output/tsv/ensembl_gene-affy_probeset.tsv (2024-01-12 18:07:20 +0900) +latest-prerequisite time: 2024-01-12 18:07:20 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ensembl_protein.ttl) @@ -5414,12 +5909,12 @@ Rule for TTL (output/ttl/ensembl_gene-ensembl_protein.ttl) Investigating output/ttl/ensembl_gene-ensembl_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:06:23 +0900 +timestamp: 2024-01-13 05:27:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ensembl_gene-ensembl_protein.tsv (2024-01-05 18:11:57 +0900) -latest-prerequisite time: 2024-01-05 18:11:57 +0900 +--output/tsv/ensembl_gene-ensembl_protein.tsv (2024-01-12 18:19:10 +0900) +latest-prerequisite time: 2024-01-12 18:19:10 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ensembl_transcript.ttl) @@ -5427,12 +5922,12 @@ Rule for TTL (output/ttl/ensembl_gene-ensembl_transcript.ttl) Investigating output/ttl/ensembl_gene-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:08:39 +0900 +timestamp: 2024-01-13 05:29:33 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ensembl_gene-ensembl_transcript.tsv (2024-01-05 18:13:58 +0900) -latest-prerequisite time: 2024-01-05 18:13:58 +0900 +--output/tsv/ensembl_gene-ensembl_transcript.tsv (2024-01-12 18:21:04 +0900) +latest-prerequisite time: 2024-01-12 18:21:04 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-hgnc.ttl) @@ -5440,12 +5935,12 @@ Rule for TTL (output/ttl/ensembl_gene-hgnc.ttl) Investigating output/ttl/ensembl_gene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:08:40 +0900 +timestamp: 2024-01-13 05:29:35 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ensembl_gene-hgnc.tsv (2024-01-05 18:13:58 +0900) -latest-prerequisite time: 2024-01-05 18:13:58 +0900 +--output/tsv/ensembl_gene-hgnc.tsv (2024-01-12 18:21:05 +0900) +latest-prerequisite time: 2024-01-12 18:21:05 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ncbigene.ttl) @@ -5453,12 +5948,12 @@ Rule for TTL (output/ttl/ensembl_gene-ncbigene.ttl) Investigating output/ttl/ensembl_gene-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:09:30 +0900 +timestamp: 2024-01-13 05:31:00 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ensembl_gene-ncbigene.tsv (2024-01-05 18:15:20 +0900) -latest-prerequisite time: 2024-01-05 18:15:20 +0900 +--output/tsv/ensembl_gene-ncbigene.tsv (2024-01-12 18:28:25 +0900) +latest-prerequisite time: 2024-01-12 18:28:25 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-uniprot.ttl) @@ -5466,12 +5961,12 @@ Rule for TTL (output/ttl/ensembl_gene-uniprot.ttl) Investigating output/ttl/ensembl_gene-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:10:12 +0900 +timestamp: 2024-01-13 05:31:42 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ensembl_gene-uniprot.tsv (2024-01-05 18:16:45 +0900) -latest-prerequisite time: 2024-01-05 18:16:45 +0900 +--output/tsv/ensembl_gene-uniprot.tsv (2024-01-12 18:40:52 +0900) +latest-prerequisite time: 2024-01-12 18:40:52 +0900 ................................ Rule for TTL (output/ttl/ensembl_protein-ensembl_transcript.ttl) @@ -5479,12 +5974,12 @@ Rule for TTL (output/ttl/ensembl_protein-ensembl_transcript.ttl) Investigating output/ttl/ensembl_protein-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:12:01 +0900 +timestamp: 2024-01-13 05:33:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ensembl_protein-ensembl_transcript.tsv (2024-01-05 18:18:34 +0900) -latest-prerequisite time: 2024-01-05 18:18:34 +0900 +--output/tsv/ensembl_protein-ensembl_transcript.tsv (2024-01-12 18:52:40 +0900) +latest-prerequisite time: 2024-01-12 18:52:40 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-affy_probeset.ttl) @@ -5492,12 +5987,12 @@ Rule for TTL (output/ttl/ensembl_transcript-affy_probeset.ttl) Investigating output/ttl/ensembl_transcript-affy_probeset.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:12:04 +0900 +timestamp: 2024-01-13 05:33:36 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ensembl_transcript-affy_probeset.tsv (2024-01-05 18:19:41 +0900) -latest-prerequisite time: 2024-01-05 18:19:41 +0900 +--output/tsv/ensembl_transcript-affy_probeset.tsv (2024-01-12 18:53:16 +0900) +latest-prerequisite time: 2024-01-12 18:53:16 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-go.ttl) @@ -5505,12 +6000,12 @@ Rule for TTL (output/ttl/ensembl_transcript-go.ttl) Investigating output/ttl/ensembl_transcript-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:22:47 +0900 +timestamp: 2024-01-13 05:46:05 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ensembl_transcript-go.tsv (2024-01-05 18:23:25 +0900) -latest-prerequisite time: 2024-01-05 18:23:25 +0900 +--output/tsv/ensembl_transcript-go.tsv (2024-01-13 02:27:47 +0900) +latest-prerequisite time: 2024-01-13 02:27:47 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-hgnc.ttl) @@ -5518,12 +6013,12 @@ Rule for TTL (output/ttl/ensembl_transcript-hgnc.ttl) Investigating output/ttl/ensembl_transcript-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:22:51 +0900 +timestamp: 2024-01-13 05:46:09 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ensembl_transcript-hgnc.tsv (2024-01-05 18:23:26 +0900) -latest-prerequisite time: 2024-01-05 18:23:26 +0900 +--output/tsv/ensembl_transcript-hgnc.tsv (2024-01-13 02:27:48 +0900) +latest-prerequisite time: 2024-01-13 02:27:48 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-refseq_rna.ttl) @@ -5531,12 +6026,12 @@ Rule for TTL (output/ttl/ensembl_transcript-refseq_rna.ttl) Investigating output/ttl/ensembl_transcript-refseq_rna.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 21:24:14 +0900 +timestamp: 2024-01-13 05:48:13 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ensembl_transcript-refseq_rna.tsv (2024-01-05 18:25:21 +0900) -latest-prerequisite time: 2024-01-05 18:25:21 +0900 +--output/tsv/ensembl_transcript-refseq_rna.tsv (2024-01-13 02:45:45 +0900) +latest-prerequisite time: 2024-01-13 02:45:45 +0900 ................................ Rule for TTL (output/ttl/hmdb-chebi.ttl) @@ -5609,12 +6104,12 @@ Rule for TTL (output/ttl/hp_phenotype-omim_phenotype.ttl) Investigating output/ttl/hp_phenotype-omim_phenotype.ttl class: Rake::FileTask task needed: true -timestamp: 2023-10-20 21:56:05 +0900 +timestamp: 2024-01-13 05:48:23 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hp_phenotype-omim_phenotype.tsv (2023-10-16 09:24:24 +0900) --config/dataset.yaml (2023-12-08 17:00:15 +0900) -latest-prerequisite time: 2023-12-08 17:00:15 +0900 +--output/tsv/hp_phenotype-omim_phenotype.tsv (2024-01-13 02:46:08 +0900) +latest-prerequisite time: 2024-01-13 02:46:08 +0900 ................................ Rule for TTL (output/ttl/hp_phenotype-orphanet_phenotype.ttl) @@ -5622,12 +6117,12 @@ Rule for TTL (output/ttl/hp_phenotype-orphanet_phenotype.ttl) Investigating output/ttl/hp_phenotype-orphanet_phenotype.ttl class: Rake::FileTask task needed: true -timestamp: 2023-10-13 21:27:24 +0900 +timestamp: 2024-01-13 05:48:24 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hp_phenotype-orphanet_phenotype.tsv (2023-10-13 18:16:38 +0900) --config/dataset.yaml (2023-12-08 17:00:15 +0900) -latest-prerequisite time: 2023-12-08 17:00:15 +0900 +--output/tsv/hp_phenotype-orphanet_phenotype.tsv (2024-01-13 02:46:08 +0900) +latest-prerequisite time: 2024-01-13 02:46:08 +0900 ................................ Rule for TTL (output/ttl/interpro-go.ttl) @@ -5739,12 +6234,12 @@ Rule for TTL (output/ttl/mgi_gene-ensembl_gene.ttl) Investigating output/ttl/mgi_gene-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:04:34 +0900 +timestamp: 2024-01-13 07:30:32 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/mgi_gene-ensembl_gene.tsv (2024-01-05 19:07:22 +0900) -latest-prerequisite time: 2024-01-05 19:07:22 +0900 +--output/tsv/mgi_gene-ensembl_gene.tsv (2024-01-13 03:28:17 +0900) +latest-prerequisite time: 2024-01-13 03:28:17 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-hgnc.ttl) @@ -5752,12 +6247,12 @@ Rule for TTL (output/ttl/mgi_gene-hgnc.ttl) Investigating output/ttl/mgi_gene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:04:34 +0900 +timestamp: 2024-01-13 07:30:33 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/mgi_gene-hgnc.tsv (2024-01-05 19:07:23 +0900) -latest-prerequisite time: 2024-01-05 19:07:23 +0900 +--output/tsv/mgi_gene-hgnc.tsv (2024-01-13 03:28:18 +0900) +latest-prerequisite time: 2024-01-13 03:28:18 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-mgi_allele.ttl) @@ -5765,12 +6260,12 @@ Rule for TTL (output/ttl/mgi_gene-mgi_allele.ttl) Investigating output/ttl/mgi_gene-mgi_allele.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:04:35 +0900 +timestamp: 2024-01-13 07:30:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/mgi_gene-mgi_allele.tsv (2024-01-05 19:07:24 +0900) -latest-prerequisite time: 2024-01-05 19:07:24 +0900 +--output/tsv/mgi_gene-mgi_allele.tsv (2024-01-13 03:28:19 +0900) +latest-prerequisite time: 2024-01-13 03:28:19 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-ncbigene.ttl) @@ -5778,12 +6273,12 @@ Rule for TTL (output/ttl/mgi_gene-ncbigene.ttl) Investigating output/ttl/mgi_gene-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:04:36 +0900 +timestamp: 2024-01-13 07:30:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/mgi_gene-ncbigene.tsv (2024-01-05 19:07:24 +0900) -latest-prerequisite time: 2024-01-05 19:07:24 +0900 +--output/tsv/mgi_gene-ncbigene.tsv (2024-01-13 03:28:19 +0900) +latest-prerequisite time: 2024-01-13 03:28:19 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-uniprot.ttl) @@ -5791,12 +6286,12 @@ Rule for TTL (output/ttl/mgi_gene-uniprot.ttl) Investigating output/ttl/mgi_gene-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:04:37 +0900 +timestamp: 2024-01-13 07:30:35 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/mgi_gene-uniprot.tsv (2024-01-05 19:07:25 +0900) -latest-prerequisite time: 2024-01-05 19:07:25 +0900 +--output/tsv/mgi_gene-uniprot.tsv (2024-01-13 03:28:20 +0900) +latest-prerequisite time: 2024-01-13 03:28:20 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-doid.ttl) @@ -5804,12 +6299,12 @@ Rule for TTL (output/ttl/mgi_genotype-doid.ttl) Investigating output/ttl/mgi_genotype-doid.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:04:37 +0900 +timestamp: 2024-01-13 07:30:36 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/mgi_genotype-doid.tsv (2024-01-05 19:07:28 +0900) -latest-prerequisite time: 2024-01-05 19:07:28 +0900 +--output/tsv/mgi_genotype-doid.tsv (2024-01-13 03:28:22 +0900) +latest-prerequisite time: 2024-01-13 03:28:22 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-mgi_allele.ttl) @@ -5817,12 +6312,12 @@ Rule for TTL (output/ttl/mgi_genotype-mgi_allele.ttl) Investigating output/ttl/mgi_genotype-mgi_allele.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:04:39 +0900 +timestamp: 2024-01-13 07:30:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/mgi_genotype-mgi_allele.tsv (2024-01-05 19:07:29 +0900) -latest-prerequisite time: 2024-01-05 19:07:29 +0900 +--output/tsv/mgi_genotype-mgi_allele.tsv (2024-01-13 03:28:23 +0900) +latest-prerequisite time: 2024-01-13 03:28:23 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-mp.ttl) @@ -5830,12 +6325,12 @@ Rule for TTL (output/ttl/mgi_genotype-mp.ttl) Investigating output/ttl/mgi_genotype-mp.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:04:42 +0900 +timestamp: 2024-01-13 07:30:40 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/mgi_genotype-mp.tsv (2024-01-05 19:07:31 +0900) -latest-prerequisite time: 2024-01-05 19:07:31 +0900 +--output/tsv/mgi_genotype-mp.tsv (2024-01-13 03:28:26 +0900) +latest-prerequisite time: 2024-01-13 03:28:26 +0900 ................................ Rule for TTL (output/ttl/ncbigene-ensembl_gene.ttl) @@ -5843,12 +6338,12 @@ Rule for TTL (output/ttl/ncbigene-ensembl_gene.ttl) Investigating output/ttl/ncbigene-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:06:02 +0900 +timestamp: 2024-01-13 07:32:00 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-ensembl_gene.tsv (2024-01-05 19:08:06 +0900) -latest-prerequisite time: 2024-01-05 19:08:06 +0900 +--output/tsv/ncbigene-ensembl_gene.tsv (2024-01-13 03:28:56 +0900) +latest-prerequisite time: 2024-01-13 03:28:56 +0900 ................................ Rule for TTL (output/ttl/ncbigene-ensembl_protein.ttl) @@ -5856,12 +6351,12 @@ Rule for TTL (output/ttl/ncbigene-ensembl_protein.ttl) Investigating output/ttl/ncbigene-ensembl_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:07:33 +0900 +timestamp: 2024-01-13 07:33:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-ensembl_protein.tsv (2024-01-05 19:09:01 +0900) -latest-prerequisite time: 2024-01-05 19:09:01 +0900 +--output/tsv/ncbigene-ensembl_protein.tsv (2024-01-13 03:29:52 +0900) +latest-prerequisite time: 2024-01-13 03:29:52 +0900 ................................ Rule for TTL (output/ttl/ncbigene-ensembl_transcript.ttl) @@ -5869,12 +6364,12 @@ Rule for TTL (output/ttl/ncbigene-ensembl_transcript.ttl) Investigating output/ttl/ncbigene-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:09:10 +0900 +timestamp: 2024-01-13 07:35:13 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-ensembl_transcript.tsv (2024-01-05 19:09:51 +0900) -latest-prerequisite time: 2024-01-05 19:09:51 +0900 +--output/tsv/ncbigene-ensembl_transcript.tsv (2024-01-13 03:30:42 +0900) +latest-prerequisite time: 2024-01-13 03:30:42 +0900 ................................ Rule for TTL (output/ttl/ncbigene-flybase_gene.ttl) @@ -5882,12 +6377,12 @@ Rule for TTL (output/ttl/ncbigene-flybase_gene.ttl) Investigating output/ttl/ncbigene-flybase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:09:11 +0900 +timestamp: 2024-01-13 07:35:14 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-flybase_gene.tsv (2024-01-05 19:11:01 +0900) -latest-prerequisite time: 2024-01-05 19:11:01 +0900 +--output/tsv/ncbigene-flybase_gene.tsv (2024-01-13 03:31:51 +0900) +latest-prerequisite time: 2024-01-13 03:31:51 +0900 ................................ Rule for TTL (output/ttl/ncbigene-go.ttl) @@ -5895,12 +6390,12 @@ Rule for TTL (output/ttl/ncbigene-go.ttl) Investigating output/ttl/ncbigene-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:24:27 +0900 +timestamp: 2024-01-13 07:50:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-go.tsv (2024-01-05 19:15:06 +0900) -latest-prerequisite time: 2024-01-05 19:15:06 +0900 +--output/tsv/ncbigene-go.tsv (2024-01-13 03:36:04 +0900) +latest-prerequisite time: 2024-01-13 03:36:04 +0900 ................................ Rule for TTL (output/ttl/ncbigene-hgnc.ttl) @@ -5908,12 +6403,12 @@ Rule for TTL (output/ttl/ncbigene-hgnc.ttl) Investigating output/ttl/ncbigene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:24:30 +0900 +timestamp: 2024-01-13 07:50:20 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-hgnc.tsv (2024-01-05 19:15:07 +0900) -latest-prerequisite time: 2024-01-05 19:15:07 +0900 +--output/tsv/ncbigene-hgnc.tsv (2024-01-13 03:36:05 +0900) +latest-prerequisite time: 2024-01-13 03:36:05 +0900 ................................ Rule for TTL (output/ttl/ncbigene-mgi_gene.ttl) @@ -5921,12 +6416,12 @@ Rule for TTL (output/ttl/ncbigene-mgi_gene.ttl) Investigating output/ttl/ncbigene-mgi_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:24:31 +0900 +timestamp: 2024-01-13 07:50:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-mgi_gene.tsv (2024-01-05 19:16:14 +0900) -latest-prerequisite time: 2024-01-05 19:16:14 +0900 +--output/tsv/ncbigene-mgi_gene.tsv (2024-01-13 03:37:08 +0900) +latest-prerequisite time: 2024-01-13 03:37:08 +0900 ................................ Rule for TTL (output/ttl/ncbigene-mirbase.ttl) @@ -5934,12 +6429,12 @@ Rule for TTL (output/ttl/ncbigene-mirbase.ttl) Investigating output/ttl/ncbigene-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:24:31 +0900 +timestamp: 2024-01-13 07:50:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-mirbase.tsv (2024-01-05 19:17:46 +0900) -latest-prerequisite time: 2024-01-05 19:17:46 +0900 +--output/tsv/ncbigene-mirbase.tsv (2024-01-13 03:38:39 +0900) +latest-prerequisite time: 2024-01-13 03:38:39 +0900 ................................ Rule for TTL (output/ttl/ncbigene-omim_gene.ttl) @@ -5947,12 +6442,12 @@ Rule for TTL (output/ttl/ncbigene-omim_gene.ttl) Investigating output/ttl/ncbigene-omim_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:24:31 +0900 +timestamp: 2024-01-13 07:50:22 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-omim_gene.tsv (2024-01-05 19:17:47 +0900) -latest-prerequisite time: 2024-01-05 19:17:47 +0900 +--output/tsv/ncbigene-omim_gene.tsv (2024-01-13 03:38:40 +0900) +latest-prerequisite time: 2024-01-13 03:38:40 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_genomic.ttl) @@ -5960,12 +6455,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_genomic.ttl) Investigating output/ttl/ncbigene-refseq_genomic.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:24:33 +0900 +timestamp: 2024-01-13 07:50:24 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-refseq_genomic.tsv (2024-01-05 19:21:28 +0900) -latest-prerequisite time: 2024-01-05 19:21:28 +0900 +--output/tsv/ncbigene-refseq_genomic.tsv (2024-01-13 03:42:16 +0900) +latest-prerequisite time: 2024-01-13 03:42:16 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_protein.ttl) @@ -5973,12 +6468,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_protein.ttl) Investigating output/ttl/ncbigene-refseq_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:36:11 +0900 +timestamp: 2024-01-13 08:02:07 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-refseq_protein.tsv (2024-01-05 19:25:34 +0900) -latest-prerequisite time: 2024-01-05 19:25:34 +0900 +--output/tsv/ncbigene-refseq_protein.tsv (2024-01-13 03:46:21 +0900) +latest-prerequisite time: 2024-01-13 03:46:21 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_rna.ttl) @@ -5986,12 +6481,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_rna.ttl) Investigating output/ttl/ncbigene-refseq_rna.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:46:28 +0900 +timestamp: 2024-01-13 08:12:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-refseq_rna.tsv (2024-01-05 19:29:02 +0900) -latest-prerequisite time: 2024-01-05 19:29:02 +0900 +--output/tsv/ncbigene-refseq_rna.tsv (2024-01-13 03:49:56 +0900) +latest-prerequisite time: 2024-01-13 03:49:56 +0900 ................................ Rule for TTL (output/ttl/ncbigene-rgd.ttl) @@ -5999,12 +6494,12 @@ Rule for TTL (output/ttl/ncbigene-rgd.ttl) Investigating output/ttl/ncbigene-rgd.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:46:31 +0900 +timestamp: 2024-01-13 08:12:25 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-rgd.tsv (2024-01-05 19:29:58 +0900) -latest-prerequisite time: 2024-01-05 19:29:58 +0900 +--output/tsv/ncbigene-rgd.tsv (2024-01-13 03:50:52 +0900) +latest-prerequisite time: 2024-01-13 03:50:52 +0900 ................................ Rule for TTL (output/ttl/ncbigene-sgd.ttl) @@ -6012,12 +6507,12 @@ Rule for TTL (output/ttl/ncbigene-sgd.ttl) Investigating output/ttl/ncbigene-sgd.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:46:31 +0900 +timestamp: 2024-01-13 08:12:25 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-sgd.tsv (2024-01-05 19:31:04 +0900) -latest-prerequisite time: 2024-01-05 19:31:04 +0900 +--output/tsv/ncbigene-sgd.tsv (2024-01-13 03:51:57 +0900) +latest-prerequisite time: 2024-01-13 03:51:57 +0900 ................................ Rule for TTL (output/ttl/ncbigene-tair.ttl) @@ -6025,12 +6520,12 @@ Rule for TTL (output/ttl/ncbigene-tair.ttl) Investigating output/ttl/ncbigene-tair.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:46:32 +0900 +timestamp: 2024-01-13 08:12:26 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-tair.tsv (2024-01-05 19:32:08 +0900) -latest-prerequisite time: 2024-01-05 19:32:08 +0900 +--output/tsv/ncbigene-tair.tsv (2024-01-13 03:53:02 +0900) +latest-prerequisite time: 2024-01-13 03:53:02 +0900 ................................ Rule for TTL (output/ttl/ncbigene-taxonomy.ttl) @@ -6038,12 +6533,12 @@ Rule for TTL (output/ttl/ncbigene-taxonomy.ttl) Investigating output/ttl/ncbigene-taxonomy.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:54:19 +0900 +timestamp: 2024-01-13 08:20:07 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-taxonomy.tsv (2024-01-05 19:32:48 +0900) -latest-prerequisite time: 2024-01-05 19:32:48 +0900 +--output/tsv/ncbigene-taxonomy.tsv (2024-01-13 03:53:41 +0900) +latest-prerequisite time: 2024-01-13 03:53:41 +0900 ................................ Rule for TTL (output/ttl/ncbigene-vgnc.ttl) @@ -6051,12 +6546,12 @@ Rule for TTL (output/ttl/ncbigene-vgnc.ttl) Investigating output/ttl/ncbigene-vgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:54:23 +0900 +timestamp: 2024-01-13 08:20:10 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-vgnc.tsv (2024-01-05 19:33:54 +0900) -latest-prerequisite time: 2024-01-05 19:33:54 +0900 +--output/tsv/ncbigene-vgnc.tsv (2024-01-13 03:54:46 +0900) +latest-prerequisite time: 2024-01-13 03:54:46 +0900 ................................ Rule for TTL (output/ttl/ncbigene-wormbase_gene.ttl) @@ -6064,12 +6559,12 @@ Rule for TTL (output/ttl/ncbigene-wormbase_gene.ttl) Investigating output/ttl/ncbigene-wormbase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:54:24 +0900 +timestamp: 2024-01-13 08:20:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-wormbase_gene.tsv (2024-01-05 19:34:59 +0900) -latest-prerequisite time: 2024-01-05 19:34:59 +0900 +--output/tsv/ncbigene-wormbase_gene.tsv (2024-01-13 03:55:53 +0900) +latest-prerequisite time: 2024-01-13 03:55:53 +0900 ................................ Rule for TTL (output/ttl/ncbigene-xenbase_gene.ttl) @@ -6077,12 +6572,12 @@ Rule for TTL (output/ttl/ncbigene-xenbase_gene.ttl) Investigating output/ttl/ncbigene-xenbase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:54:24 +0900 +timestamp: 2024-01-13 08:20:12 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-xenbase_gene.tsv (2024-01-05 19:36:04 +0900) -latest-prerequisite time: 2024-01-05 19:36:04 +0900 +--output/tsv/ncbigene-xenbase_gene.tsv (2024-01-13 03:56:58 +0900) +latest-prerequisite time: 2024-01-13 03:56:58 +0900 ................................ Rule for TTL (output/ttl/ncbigene-zfin_gene.ttl) @@ -6090,12 +6585,12 @@ Rule for TTL (output/ttl/ncbigene-zfin_gene.ttl) Investigating output/ttl/ncbigene-zfin_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-05 23:54:25 +0900 +timestamp: 2024-01-13 08:20:12 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/ncbigene-zfin_gene.tsv (2024-01-05 19:37:09 +0900) -latest-prerequisite time: 2024-01-05 19:37:09 +0900 +--output/tsv/ncbigene-zfin_gene.tsv (2024-01-13 03:58:03 +0900) +latest-prerequisite time: 2024-01-13 03:58:03 +0900 ................................ Rule for TTL (output/ttl/oma_protein-ensembl_gene.ttl) @@ -6181,12 +6676,12 @@ Rule for TTL (output/ttl/reactome_pathway-chebi.ttl) Investigating output/ttl/reactome_pathway-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 00:35:12 +0900 +timestamp: 2024-01-13 09:00:57 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/reactome_pathway-chebi.tsv (2024-01-05 19:45:13 +0900) -latest-prerequisite time: 2024-01-05 19:45:13 +0900 +--output/tsv/reactome_pathway-chebi.tsv (2024-01-13 04:05:37 +0900) +latest-prerequisite time: 2024-01-13 04:05:37 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-go.ttl) @@ -6194,12 +6689,12 @@ Rule for TTL (output/ttl/reactome_pathway-go.ttl) Investigating output/ttl/reactome_pathway-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 00:35:12 +0900 +timestamp: 2024-01-13 09:00:57 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/reactome_pathway-go.tsv (2024-01-05 19:45:14 +0900) -latest-prerequisite time: 2024-01-05 19:45:14 +0900 +--output/tsv/reactome_pathway-go.tsv (2024-01-13 04:05:37 +0900) +latest-prerequisite time: 2024-01-13 04:05:37 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-iuphar_ligand.ttl) @@ -6207,12 +6702,12 @@ Rule for TTL (output/ttl/reactome_pathway-iuphar_ligand.ttl) Investigating output/ttl/reactome_pathway-iuphar_ligand.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 00:35:13 +0900 +timestamp: 2024-01-13 09:00:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/reactome_pathway-iuphar_ligand.tsv (2024-01-05 19:45:14 +0900) -latest-prerequisite time: 2024-01-05 19:45:14 +0900 +--output/tsv/reactome_pathway-iuphar_ligand.tsv (2024-01-13 04:05:38 +0900) +latest-prerequisite time: 2024-01-13 04:05:38 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-mirbase.ttl) @@ -6220,12 +6715,12 @@ Rule for TTL (output/ttl/reactome_pathway-mirbase.ttl) Investigating output/ttl/reactome_pathway-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 00:35:13 +0900 +timestamp: 2024-01-13 09:00:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/reactome_pathway-mirbase.tsv (2024-01-05 19:45:14 +0900) -latest-prerequisite time: 2024-01-05 19:45:14 +0900 +--output/tsv/reactome_pathway-mirbase.tsv (2024-01-13 04:05:38 +0900) +latest-prerequisite time: 2024-01-13 04:05:38 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-reactome_reaction.ttl) @@ -6233,12 +6728,12 @@ Rule for TTL (output/ttl/reactome_pathway-reactome_reaction.ttl) Investigating output/ttl/reactome_pathway-reactome_reaction.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 00:35:16 +0900 +timestamp: 2024-01-13 09:01:02 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/reactome_pathway-reactome_reaction.tsv (2024-01-05 19:45:16 +0900) -latest-prerequisite time: 2024-01-05 19:45:16 +0900 +--output/tsv/reactome_pathway-reactome_reaction.tsv (2024-01-13 04:05:39 +0900) +latest-prerequisite time: 2024-01-13 04:05:39 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-uniprot.ttl) @@ -6246,12 +6741,12 @@ Rule for TTL (output/ttl/reactome_pathway-uniprot.ttl) Investigating output/ttl/reactome_pathway-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 00:35:23 +0900 +timestamp: 2024-01-13 09:01:09 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/reactome_pathway-uniprot.tsv (2024-01-05 19:45:17 +0900) -latest-prerequisite time: 2024-01-05 19:45:17 +0900 +--output/tsv/reactome_pathway-uniprot.tsv (2024-01-13 04:05:40 +0900) +latest-prerequisite time: 2024-01-13 04:05:40 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-chebi.ttl) @@ -6259,12 +6754,12 @@ Rule for TTL (output/ttl/reactome_reaction-chebi.ttl) Investigating output/ttl/reactome_reaction-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 00:35:25 +0900 +timestamp: 2024-01-13 09:01:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/reactome_reaction-chebi.tsv (2024-01-05 19:45:18 +0900) -latest-prerequisite time: 2024-01-05 19:45:18 +0900 +--output/tsv/reactome_reaction-chebi.tsv (2024-01-13 04:05:41 +0900) +latest-prerequisite time: 2024-01-13 04:05:41 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-go.ttl) @@ -6272,12 +6767,12 @@ Rule for TTL (output/ttl/reactome_reaction-go.ttl) Investigating output/ttl/reactome_reaction-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 00:35:25 +0900 +timestamp: 2024-01-13 09:01:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/reactome_reaction-go.tsv (2024-01-05 19:45:18 +0900) -latest-prerequisite time: 2024-01-05 19:45:18 +0900 +--output/tsv/reactome_reaction-go.tsv (2024-01-13 04:05:41 +0900) +latest-prerequisite time: 2024-01-13 04:05:41 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-iuphar_ligand.ttl) @@ -6285,12 +6780,12 @@ Rule for TTL (output/ttl/reactome_reaction-iuphar_ligand.ttl) Investigating output/ttl/reactome_reaction-iuphar_ligand.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 00:35:26 +0900 +timestamp: 2024-01-13 09:01:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/reactome_reaction-iuphar_ligand.tsv (2024-01-05 19:45:18 +0900) -latest-prerequisite time: 2024-01-05 19:45:18 +0900 +--output/tsv/reactome_reaction-iuphar_ligand.tsv (2024-01-13 04:05:42 +0900) +latest-prerequisite time: 2024-01-13 04:05:42 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-mirbase.ttl) @@ -6298,12 +6793,12 @@ Rule for TTL (output/ttl/reactome_reaction-mirbase.ttl) Investigating output/ttl/reactome_reaction-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 00:35:26 +0900 +timestamp: 2024-01-13 09:01:12 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/reactome_reaction-mirbase.tsv (2024-01-05 19:45:19 +0900) -latest-prerequisite time: 2024-01-05 19:45:19 +0900 +--output/tsv/reactome_reaction-mirbase.tsv (2024-01-13 04:05:42 +0900) +latest-prerequisite time: 2024-01-13 04:05:42 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-uniprot.ttl) @@ -6311,12 +6806,12 @@ Rule for TTL (output/ttl/reactome_reaction-uniprot.ttl) Investigating output/ttl/reactome_reaction-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 00:35:31 +0900 +timestamp: 2024-01-13 09:01:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/reactome_reaction-uniprot.tsv (2024-01-05 19:45:20 +0900) -latest-prerequisite time: 2024-01-05 19:45:20 +0900 +--output/tsv/reactome_reaction-uniprot.tsv (2024-01-13 04:05:43 +0900) +latest-prerequisite time: 2024-01-13 04:05:43 +0900 ................................ Rule for TTL (output/ttl/refseq_protein-uniprot.ttl) @@ -6324,12 +6819,12 @@ Rule for TTL (output/ttl/refseq_protein-uniprot.ttl) Investigating output/ttl/refseq_protein-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 01:38:29 +0900 +timestamp: 2024-01-13 10:02:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/refseq_protein-uniprot.tsv (2024-01-05 19:52:10 +0900) -latest-prerequisite time: 2024-01-05 19:52:10 +0900 +--output/tsv/refseq_protein-uniprot.tsv (2024-01-13 04:12:24 +0900) +latest-prerequisite time: 2024-01-13 04:12:24 +0900 ................................ Rule for TTL (output/ttl/refseq_rna-dbsnp.ttl) @@ -6506,12 +7001,12 @@ Rule for TTL (output/ttl/sra_accession-bioproject.ttl) Investigating output/ttl/sra_accession-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 01:38:46 +0900 +timestamp: 2024-01-13 10:02:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_accession-bioproject.tsv (2024-01-05 19:53:57 +0900) -latest-prerequisite time: 2024-01-05 19:53:57 +0900 +--output/tsv/sra_accession-bioproject.tsv (2024-01-13 04:14:21 +0900) +latest-prerequisite time: 2024-01-13 04:14:21 +0900 ................................ Rule for TTL (output/ttl/sra_accession-biosample.ttl) @@ -6519,12 +7014,12 @@ Rule for TTL (output/ttl/sra_accession-biosample.ttl) Investigating output/ttl/sra_accession-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 01:42:39 +0900 +timestamp: 2024-01-13 10:07:13 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_accession-biosample.tsv (2024-01-05 20:01:04 +0900) -latest-prerequisite time: 2024-01-05 20:01:04 +0900 +--output/tsv/sra_accession-biosample.tsv (2024-01-13 04:21:11 +0900) +latest-prerequisite time: 2024-01-13 04:21:11 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_analysis.ttl) @@ -6532,12 +7027,12 @@ Rule for TTL (output/ttl/sra_accession-sra_analysis.ttl) Investigating output/ttl/sra_accession-sra_analysis.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 01:42:43 +0900 +timestamp: 2024-01-13 10:07:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_accession-sra_analysis.tsv (2024-01-05 20:02:04 +0900) -latest-prerequisite time: 2024-01-05 20:02:04 +0900 +--output/tsv/sra_accession-sra_analysis.tsv (2024-01-13 04:22:12 +0900) +latest-prerequisite time: 2024-01-13 04:22:12 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_experiment.ttl) @@ -6545,12 +7040,12 @@ Rule for TTL (output/ttl/sra_accession-sra_experiment.ttl) Investigating output/ttl/sra_accession-sra_experiment.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 01:47:06 +0900 +timestamp: 2024-01-13 10:11:39 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_accession-sra_experiment.tsv (2024-01-05 20:08:08 +0900) -latest-prerequisite time: 2024-01-05 20:08:08 +0900 +--output/tsv/sra_accession-sra_experiment.tsv (2024-01-13 04:28:07 +0900) +latest-prerequisite time: 2024-01-13 04:28:07 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_project.ttl) @@ -6558,12 +7053,12 @@ Rule for TTL (output/ttl/sra_accession-sra_project.ttl) Investigating output/ttl/sra_accession-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 01:47:12 +0900 +timestamp: 2024-01-13 10:11:45 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_accession-sra_project.tsv (2024-01-05 20:09:08 +0900) -latest-prerequisite time: 2024-01-05 20:09:08 +0900 +--output/tsv/sra_accession-sra_project.tsv (2024-01-13 04:29:09 +0900) +latest-prerequisite time: 2024-01-13 04:29:09 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_run.ttl) @@ -6571,12 +7066,12 @@ Rule for TTL (output/ttl/sra_accession-sra_run.ttl) Investigating output/ttl/sra_accession-sra_run.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 01:51:44 +0900 +timestamp: 2024-01-13 10:17:22 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_accession-sra_run.tsv (2024-01-05 20:16:00 +0900) -latest-prerequisite time: 2024-01-05 20:16:00 +0900 +--output/tsv/sra_accession-sra_run.tsv (2024-01-13 04:36:07 +0900) +latest-prerequisite time: 2024-01-13 04:36:07 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_sample.ttl) @@ -6584,12 +7079,12 @@ Rule for TTL (output/ttl/sra_accession-sra_sample.ttl) Investigating output/ttl/sra_accession-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 01:57:00 +0900 +timestamp: 2024-01-13 10:22:10 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_accession-sra_sample.tsv (2024-01-05 20:21:53 +0900) -latest-prerequisite time: 2024-01-05 20:21:53 +0900 +--output/tsv/sra_accession-sra_sample.tsv (2024-01-13 04:42:09 +0900) +latest-prerequisite time: 2024-01-13 04:42:09 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-bioproject.ttl) @@ -6597,12 +7092,12 @@ Rule for TTL (output/ttl/sra_experiment-bioproject.ttl) Investigating output/ttl/sra_experiment-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:00:55 +0900 +timestamp: 2024-01-13 10:25:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_experiment-bioproject.tsv (2024-01-05 20:25:14 +0900) -latest-prerequisite time: 2024-01-05 20:25:14 +0900 +--output/tsv/sra_experiment-bioproject.tsv (2024-01-13 04:45:33 +0900) +latest-prerequisite time: 2024-01-13 04:45:33 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-biosample.ttl) @@ -6610,12 +7105,12 @@ Rule for TTL (output/ttl/sra_experiment-biosample.ttl) Investigating output/ttl/sra_experiment-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:05:05 +0900 +timestamp: 2024-01-13 10:30:24 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_experiment-biosample.tsv (2024-01-05 20:28:29 +0900) -latest-prerequisite time: 2024-01-05 20:28:29 +0900 +--output/tsv/sra_experiment-biosample.tsv (2024-01-13 04:48:42 +0900) +latest-prerequisite time: 2024-01-13 04:48:42 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-sra_project.ttl) @@ -6623,12 +7118,12 @@ Rule for TTL (output/ttl/sra_experiment-sra_project.ttl) Investigating output/ttl/sra_experiment-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:09:55 +0900 +timestamp: 2024-01-13 10:34:51 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_experiment-sra_project.tsv (2024-01-05 20:31:14 +0900) -latest-prerequisite time: 2024-01-05 20:31:14 +0900 +--output/tsv/sra_experiment-sra_project.tsv (2024-01-13 04:51:24 +0900) +latest-prerequisite time: 2024-01-13 04:51:24 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-sra_sample.ttl) @@ -6636,12 +7131,12 @@ Rule for TTL (output/ttl/sra_experiment-sra_sample.ttl) Investigating output/ttl/sra_experiment-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:13:43 +0900 +timestamp: 2024-01-13 10:38:32 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_experiment-sra_sample.tsv (2024-01-05 20:33:56 +0900) -latest-prerequisite time: 2024-01-05 20:33:56 +0900 +--output/tsv/sra_experiment-sra_sample.tsv (2024-01-13 04:54:01 +0900) +latest-prerequisite time: 2024-01-13 04:54:01 +0900 ................................ Rule for TTL (output/ttl/sra_project-bioproject.ttl) @@ -6649,12 +7144,12 @@ Rule for TTL (output/ttl/sra_project-bioproject.ttl) Investigating output/ttl/sra_project-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:13:48 +0900 +timestamp: 2024-01-13 10:38:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_project-bioproject.tsv (2024-01-05 20:34:56 +0900) -latest-prerequisite time: 2024-01-05 20:34:56 +0900 +--output/tsv/sra_project-bioproject.tsv (2024-01-13 04:55:01 +0900) +latest-prerequisite time: 2024-01-13 04:55:01 +0900 ................................ Rule for TTL (output/ttl/sra_run-bioproject.ttl) @@ -6662,12 +7157,12 @@ Rule for TTL (output/ttl/sra_run-bioproject.ttl) Investigating output/ttl/sra_run-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:17:42 +0900 +timestamp: 2024-01-13 10:42:32 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_run-bioproject.tsv (2024-01-05 20:38:36 +0900) -latest-prerequisite time: 2024-01-05 20:38:36 +0900 +--output/tsv/sra_run-bioproject.tsv (2024-01-13 04:58:38 +0900) +latest-prerequisite time: 2024-01-13 04:58:38 +0900 ................................ Rule for TTL (output/ttl/sra_run-biosample.ttl) @@ -6675,12 +7170,12 @@ Rule for TTL (output/ttl/sra_run-biosample.ttl) Investigating output/ttl/sra_run-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:21:57 +0900 +timestamp: 2024-01-13 10:47:00 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_run-biosample.tsv (2024-01-05 20:42:13 +0900) -latest-prerequisite time: 2024-01-05 20:42:13 +0900 +--output/tsv/sra_run-biosample.tsv (2024-01-13 05:02:16 +0900) +latest-prerequisite time: 2024-01-13 05:02:16 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_experiment.ttl) @@ -6688,12 +7183,12 @@ Rule for TTL (output/ttl/sra_run-sra_experiment.ttl) Investigating output/ttl/sra_run-sra_experiment.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:26:52 +0900 +timestamp: 2024-01-13 10:52:07 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_run-sra_experiment.tsv (2024-01-05 20:45:08 +0900) -latest-prerequisite time: 2024-01-05 20:45:08 +0900 +--output/tsv/sra_run-sra_experiment.tsv (2024-01-13 05:05:17 +0900) +latest-prerequisite time: 2024-01-13 05:05:17 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_project.ttl) @@ -6701,12 +7196,12 @@ Rule for TTL (output/ttl/sra_run-sra_project.ttl) Investigating output/ttl/sra_run-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:31:15 +0900 +timestamp: 2024-01-13 10:56:36 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_run-sra_project.tsv (2024-01-05 20:48:09 +0900) -latest-prerequisite time: 2024-01-05 20:48:09 +0900 +--output/tsv/sra_run-sra_project.tsv (2024-01-13 05:08:26 +0900) +latest-prerequisite time: 2024-01-13 05:08:26 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_sample.ttl) @@ -6714,12 +7209,12 @@ Rule for TTL (output/ttl/sra_run-sra_sample.ttl) Investigating output/ttl/sra_run-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:35:37 +0900 +timestamp: 2024-01-13 11:01:05 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_run-sra_sample.tsv (2024-01-05 20:51:11 +0900) -latest-prerequisite time: 2024-01-05 20:51:11 +0900 +--output/tsv/sra_run-sra_sample.tsv (2024-01-13 05:11:29 +0900) +latest-prerequisite time: 2024-01-13 05:11:29 +0900 ................................ Rule for TTL (output/ttl/sra_sample-biosample.ttl) @@ -6727,12 +7222,12 @@ Rule for TTL (output/ttl/sra_sample-biosample.ttl) Investigating output/ttl/sra_sample-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:39:39 +0900 +timestamp: 2024-01-13 11:05:12 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/sra_sample-biosample.tsv (2024-01-05 20:54:05 +0900) -latest-prerequisite time: 2024-01-05 20:54:05 +0900 +--output/tsv/sra_sample-biosample.tsv (2024-01-13 05:14:27 +0900) +latest-prerequisite time: 2024-01-13 05:14:27 +0900 ................................ Rule for TTL (output/ttl/swisslipids-chebi.ttl) @@ -6740,12 +7235,12 @@ Rule for TTL (output/ttl/swisslipids-chebi.ttl) Investigating output/ttl/swisslipids-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:39:41 +0900 +timestamp: 2024-01-13 11:05:14 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/swisslipids-chebi.tsv (2024-01-05 20:54:20 +0900) -latest-prerequisite time: 2024-01-05 20:54:20 +0900 +--output/tsv/swisslipids-chebi.tsv (2024-01-13 05:14:42 +0900) +latest-prerequisite time: 2024-01-13 05:14:42 +0900 ................................ Rule for TTL (output/ttl/swisslipids-hmdb.ttl) @@ -6753,12 +7248,12 @@ Rule for TTL (output/ttl/swisslipids-hmdb.ttl) Investigating output/ttl/swisslipids-hmdb.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:39:41 +0900 +timestamp: 2024-01-13 11:05:14 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/swisslipids-hmdb.tsv (2024-01-05 20:54:34 +0900) -latest-prerequisite time: 2024-01-05 20:54:34 +0900 +--output/tsv/swisslipids-hmdb.tsv (2024-01-13 05:14:56 +0900) +latest-prerequisite time: 2024-01-13 05:14:56 +0900 ................................ Rule for TTL (output/ttl/swisslipids-inchi_key.ttl) @@ -6766,12 +7261,12 @@ Rule for TTL (output/ttl/swisslipids-inchi_key.ttl) Investigating output/ttl/swisslipids-inchi_key.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:39:47 +0900 +timestamp: 2024-01-13 11:05:20 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/swisslipids-inchi_key.tsv (2024-01-05 20:54:46 +0900) -latest-prerequisite time: 2024-01-05 20:54:46 +0900 +--output/tsv/swisslipids-inchi_key.tsv (2024-01-13 05:15:08 +0900) +latest-prerequisite time: 2024-01-13 05:15:08 +0900 ................................ Rule for TTL (output/ttl/taxonomy-pubmed.ttl) @@ -6779,12 +7274,12 @@ Rule for TTL (output/ttl/taxonomy-pubmed.ttl) Investigating output/ttl/taxonomy-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 02:39:47 +0900 +timestamp: 2024-01-13 11:05:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/taxonomy-pubmed.tsv (2024-01-05 20:54:46 +0900) -latest-prerequisite time: 2024-01-05 20:54:46 +0900 +--output/tsv/taxonomy-pubmed.tsv (2024-01-13 05:15:08 +0900) +latest-prerequisite time: 2024-01-13 05:15:08 +0900 ................................ Rule for TTL (output/ttl/togovar-clinvar.ttl) @@ -7052,12 +7547,12 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_insdc.ttl) Investigating output/ttl/uniprot_reference_proteome-assembly_insdc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 06:42:55 +0900 +timestamp: 2024-01-13 15:15:29 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/uniprot_reference_proteome-assembly_insdc.tsv (2024-01-05 21:01:06 +0900) -latest-prerequisite time: 2024-01-05 21:01:06 +0900 +--output/tsv/uniprot_reference_proteome-assembly_insdc.tsv (2024-01-13 05:21:43 +0900) +latest-prerequisite time: 2024-01-13 05:21:43 +0900 ................................ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_refseq.ttl) @@ -7065,12 +7560,12 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_refseq.ttl) Investigating output/ttl/uniprot_reference_proteome-assembly_refseq.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 06:42:55 +0900 +timestamp: 2024-01-13 15:15:30 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/uniprot_reference_proteome-assembly_refseq.tsv (2024-01-05 21:01:07 +0900) -latest-prerequisite time: 2024-01-05 21:01:07 +0900 +--output/tsv/uniprot_reference_proteome-assembly_refseq.tsv (2024-01-13 05:21:44 +0900) +latest-prerequisite time: 2024-01-13 05:21:44 +0900 ................................ Rule for TTL (output/ttl/uniprot_reference_proteome-taxonomy.ttl) @@ -7078,44 +7573,44 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-taxonomy.ttl) Investigating output/ttl/uniprot_reference_proteome-taxonomy.ttl class: Rake::FileTask task needed: true -timestamp: 2024-01-06 06:43:00 +0900 +timestamp: 2024-01-13 15:15:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2023-12-08 17:00:15 +0900) ---output/tsv/uniprot_reference_proteome-taxonomy.tsv (2024-01-05 21:01:07 +0900) -latest-prerequisite time: 2024-01-05 21:01:07 +0900 +--output/tsv/uniprot_reference_proteome-taxonomy.tsv (2024-01-13 05:21:44 +0900) +latest-prerequisite time: 2024-01-13 05:21:44 +0900 ................................ ### Update ID and Label TTL for atc if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/atc.ttl has no timestamp file -# File output/id-label/atc.ttl is created 6.967653367613819 days ago (will be updated when >5 days) +# File output/id-label/atc.ttl is created 7.355945571992535 days ago (will be updated when >5 days) ## Update output/id-label/atc.ttl -< 2024-01-06T06:43:02 atc +< 2024-01-13T15:15:37 atc togoid-rdfize-id-label atc -> 2024-01-06T06:43:03 atc +> 2024-01-13T15:15:38 atc ### Update ID and Label TTL for bioproject if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/bioproject.ttl is older than input/bioproject/download.lock ## Update output/id-label/bioproject.ttl -< 2024-01-06T06:43:03 bioproject +< 2024-01-13T15:15:38 bioproject togoid-rdfize-id-label bioproject -> 2024-01-06T06:43:09 bioproject +> 2024-01-13T15:15:43 bioproject ### Update ID and Label TTL for cellosaurus if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/cellosaurus.ttl is newer than input/cellosaurus/download.lock # => Preserving output/ttl/cellosaurus.ttl ### Update ID and Label TTL for ec if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/ec.ttl has no timestamp file -# File output/id-label/ec.ttl is created 6.967657336798379 days ago (will be updated when >5 days) +# File output/id-label/ec.ttl is created 7.355952129896493 days ago (will be updated when >5 days) ## Update output/id-label/ec.ttl -< 2024-01-06T06:43:09 ec +< 2024-01-13T15:15:43 ec togoid-rdfize-id-label ec -> 2024-01-06T06:43:09 ec +> 2024-01-13T15:15:44 ec ### Update ID and Label TTL for flybase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/flybase_gene.ttl has no timestamp file -# File output/id-label/flybase_gene.ttl is created 6.966860360952095 days ago (will be updated when >5 days) +# File output/id-label/flybase_gene.ttl is created 7.355137791455868 days ago (will be updated when >5 days) ## Update output/id-label/flybase_gene.ttl -< 2024-01-06T06:43:09 flybase_gene +< 2024-01-13T15:15:44 flybase_gene togoid-rdfize-id-label flybase_gene -> 2024-01-06T06:44:20 flybase_gene +> 2024-01-13T15:16:54 flybase_gene ### Update ID and Label TTL for hmdb if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/hmdb.ttl is newer than input/hmdb/download.lock # => Preserving output/ttl/hmdb.ttl @@ -7127,116 +7622,116 @@ togoid-rdfize-id-label flybase_gene # => Preserving output/ttl/interpro.ttl ### Update ID and Label TTL for mgi_allele if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_allele.ttl has no timestamp file -# File output/id-label/mgi_allele.ttl is created 6.967668165902014 days ago (will be updated when >5 days) +# File output/id-label/mgi_allele.ttl is created 7.355931808599248 days ago (will be updated when >5 days) ## Update output/id-label/mgi_allele.ttl -< 2024-01-06T06:44:20 mgi_allele +< 2024-01-13T15:16:54 mgi_allele togoid-rdfize-id-label mgi_allele -> 2024-01-06T06:44:21 mgi_allele +> 2024-01-13T15:16:55 mgi_allele ### Update ID and Label TTL for mgi_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_gene.ttl is older than input/mgi_gene/download.lock ## Update output/id-label/mgi_gene.ttl -< 2024-01-06T06:44:21 mgi_gene +< 2024-01-13T15:16:55 mgi_gene togoid-rdfize-id-label mgi_gene -> 2024-01-06T06:44:25 mgi_gene +> 2024-01-13T15:16:59 mgi_gene ### Update ID and Label TTL for mgi_genotype if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_genotype.ttl is older than input/mgi_genotype/download.lock ## Update output/id-label/mgi_genotype.ttl -< 2024-01-06T06:44:25 mgi_genotype +< 2024-01-13T15:16:59 mgi_genotype togoid-rdfize-id-label mgi_genotype -> 2024-01-06T06:44:26 mgi_genotype +> 2024-01-13T15:17:00 mgi_genotype ### Update ID and Label TTL for mirbase if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mirbase.ttl has no timestamp file -# File output/id-label/mirbase.ttl is created 6.966609432634549 days ago (will be updated when >5 days) +# File output/id-label/mirbase.ttl is created 7.354885426616099 days ago (will be updated when >5 days) ## Update output/id-label/mirbase.ttl -< 2024-01-06T06:44:26 mirbase +< 2024-01-13T15:17:00 mirbase togoid-rdfize-id-label mirbase -> 2024-01-06T06:45:58 mirbase +> 2024-01-13T15:18:31 mirbase ### Update ID and Label TTL for pathbank if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pathbank.ttl has no timestamp file -# File output/id-label/pathbank.ttl is created 6.96766535302081 days ago (will be updated when >5 days) +# File output/id-label/pathbank.ttl is created 7.355932630170926 days ago (will be updated when >5 days) ## Update output/id-label/pathbank.ttl -< 2024-01-06T06:45:58 pathbank +< 2024-01-13T15:18:31 pathbank togoid-rdfize-id-label pathbank -> 2024-01-06T06:45:59 pathbank +> 2024-01-13T15:18:32 pathbank ### Update ID and Label TTL for pfam if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pfam.ttl has no timestamp file -# File output/id-label/pfam.ttl is created 6.967637884696644 days ago (will be updated when >5 days) +# File output/id-label/pfam.ttl is created 7.355902553613565 days ago (will be updated when >5 days) ## Update output/id-label/pfam.ttl -< 2024-01-06T06:45:59 pfam +< 2024-01-13T15:18:32 pfam togoid-rdfize-id-label pfam -> 2024-01-06T06:46:03 pfam +> 2024-01-13T15:18:36 pfam ### Update ID and Label TTL for pubchem_pathway if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pubchem_pathway.ttl has no timestamp file -# File output/id-label/pubchem_pathway.ttl is created 6.967666979614051 days ago (will be updated when >5 days) +# File output/id-label/pubchem_pathway.ttl is created 7.355930362657188 days ago (will be updated when >5 days) ## Update output/id-label/pubchem_pathway.ttl -< 2024-01-06T06:46:03 pubchem_pathway +< 2024-01-13T15:18:36 pubchem_pathway togoid-rdfize-id-label pubchem_pathway -> 2024-01-06T06:46:04 pubchem_pathway +> 2024-01-13T15:18:37 pubchem_pathway ### Update ID and Label TTL for refseq_rna if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/refseq_rna.ttl is newer than input/refseq_rna/download.lock # => Preserving output/ttl/refseq_rna.ttl ### Update ID and Label TTL for rgd if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/rgd.ttl has no timestamp file -# File output/id-label/rgd.ttl is created 6.967014193937651 days ago (will be updated when >5 days) +# File output/id-label/rgd.ttl is created 7.35528823753868 days ago (will be updated when >5 days) ## Update output/id-label/rgd.ttl -< 2024-01-06T06:46:04 rgd +< 2024-01-13T15:18:37 rgd togoid-rdfize-id-label rgd -> 2024-01-06T06:47:00 rgd +> 2024-01-13T15:19:33 rgd ### Update ID and Label TTL for sgd if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/sgd.ttl has no timestamp file -# File output/id-label/sgd.ttl is created 6.966902896677974 days ago (will be updated when >5 days) +# File output/id-label/sgd.ttl is created 7.355178017657986 days ago (will be updated when >5 days) ## Update output/id-label/sgd.ttl -< 2024-01-06T06:47:00 sgd +< 2024-01-13T15:19:33 sgd togoid-rdfize-id-label sgd -> 2024-01-06T06:48:05 sgd +> 2024-01-13T15:20:38 sgd ### Update ID and Label TTL for swisslipids if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/swisslipids.ttl is older than input/swisslipids/download.lock ## Update output/id-label/swisslipids.ttl -< 2024-01-06T06:48:05 swisslipids +< 2024-01-13T15:20:38 swisslipids togoid-rdfize-id-label swisslipids -> 2024-01-06T06:48:11 swisslipids +> 2024-01-13T15:20:44 swisslipids ### Update ID and Label TTL for tair if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/tair.ttl has no timestamp file -# File output/id-label/tair.ttl is created 6.966901488108715 days ago (will be updated when >5 days) +# File output/id-label/tair.ttl is created 7.355170720475266 days ago (will be updated when >5 days) ## Update output/id-label/tair.ttl -< 2024-01-06T06:48:11 tair +< 2024-01-13T15:20:44 tair togoid-rdfize-id-label tair -> 2024-01-06T06:49:17 tair +> 2024-01-13T15:21:49 tair ### Update ID and Label TTL for uniprot_reference_proteome if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/uniprot_reference_proteome.ttl has no timestamp file -# File output/id-label/uniprot_reference_proteome.ttl is created 6.967627276114826 days ago (will be updated when >5 days) +# File output/id-label/uniprot_reference_proteome.ttl is created 7.355894722793334 days ago (will be updated when >5 days) ## Update output/id-label/uniprot_reference_proteome.ttl -< 2024-01-06T06:49:17 uniprot_reference_proteome +< 2024-01-13T15:21:49 uniprot_reference_proteome togoid-rdfize-id-label uniprot_reference_proteome -> 2024-01-06T06:49:20 uniprot_reference_proteome +> 2024-01-13T15:21:52 uniprot_reference_proteome ### Update ID and Label TTL for vgnc if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/vgnc.ttl has no timestamp file -# File output/id-label/vgnc.ttl is created 6.966908345334513 days ago (will be updated when >5 days) +# File output/id-label/vgnc.ttl is created 7.355162536443669 days ago (will be updated when >5 days) ## Update output/id-label/vgnc.ttl -< 2024-01-06T06:49:20 vgnc +< 2024-01-13T15:21:52 vgnc togoid-rdfize-id-label vgnc -> 2024-01-06T06:50:26 vgnc +> 2024-01-13T15:22:57 vgnc ### Update ID and Label TTL for wormbase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/wormbase_gene.ttl has no timestamp file -# File output/id-label/wormbase_gene.ttl is created 6.966918719203437 days ago (will be updated when >5 days) +# File output/id-label/wormbase_gene.ttl is created 7.355161166310729 days ago (will be updated when >5 days) ## Update output/id-label/wormbase_gene.ttl -< 2024-01-06T06:50:26 wormbase_gene +< 2024-01-13T15:22:57 wormbase_gene togoid-rdfize-id-label wormbase_gene -> 2024-01-06T06:51:32 wormbase_gene +> 2024-01-13T15:24:02 wormbase_gene ### Update ID and Label TTL for xenbase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/xenbase_gene.ttl has no timestamp file -# File output/id-label/xenbase_gene.ttl is created 6.966920517183218 days ago (will be updated when >5 days) +# File output/id-label/xenbase_gene.ttl is created 7.355147761584364 days ago (will be updated when >5 days) ## Update output/id-label/xenbase_gene.ttl -< 2024-01-06T06:51:32 xenbase_gene +< 2024-01-13T15:24:02 xenbase_gene togoid-rdfize-id-label xenbase_gene -> 2024-01-06T06:52:37 xenbase_gene +> 2024-01-13T15:25:08 xenbase_gene ### Update ID and Label TTL for zfin_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/zfin_gene.ttl has no timestamp file -# File output/id-label/zfin_gene.ttl is created 6.966927664345671 days ago (will be updated when >5 days) +# File output/id-label/zfin_gene.ttl is created 7.3551589056950695 days ago (will be updated when >5 days) ## Update output/id-label/zfin_gene.ttl -< 2024-01-06T06:52:37 zfin_gene +< 2024-01-13T15:25:08 zfin_gene togoid-rdfize-id-label zfin_gene -> 2024-01-06T06:53:43 zfin_gene +> 2024-01-13T15:26:13 zfin_gene Rule for ID and Label TTL (output/id-label/cellosaurus.ttl) ------------------------------ Investigating output/id-label/cellosaurus.ttl @@ -7298,4 +7793,4 @@ latest-prerequisite time: 2023-12-08 17:00:15 +0900 ................................ -*** Finished: 2024-01-06T06:53:43 *** +*** Finished: 2024-01-13T15:26:13 ***