diff --git a/docs/help.md b/docs/help.md
index c94ffe93..ac7a4e4d 100644
--- a/docs/help.md
+++ b/docs/help.md
@@ -1,5 +1,5 @@
# TogoID ver. 2.0
-Datasets last updated: 2024-10-21
+Datasets last updated: 2024-10-28
## About
- [TogoID](https://togoid.dbcls.jp/) is an ID conversion service implementing unique features with an intuitive web interface and an API for programmatic access. TogoID supports datasets from various biological categories such as gene, protein, chemical compound, pathway, disease, etc. TogoID users can perform exploratory multistep conversions to find a path among IDs. To guide the interpretation of biological meanings in the conversions, we crafted an [ontology](https://togoid.dbcls.jp/ontology) that defines the semantics of the dataset relations.
@@ -10,7 +10,7 @@ Datasets last updated: 2024-10-21
## Video tutorial
- [How to use TogoID: an exploratory ID converter to bridge biological datasets](https://youtu.be/gXnvm6Fn4R8)
-## Statistics (as of 2024-10-21)
+## Statistics (as of 2024-10-28)
- Number of target datasets
- 105 (from 73 databases)
- For details on the target DBs and ID examples, please refer to the "DATASETS" tab.
diff --git a/docs/help_ja.md b/docs/help_ja.md
index 970efa1e..6631815c 100644
--- a/docs/help_ja.md
+++ b/docs/help_ja.md
@@ -1,5 +1,5 @@
# TogoID ver. 2.0
-Datasets last updated: 2024-10-21
+Datasets last updated: 2024-10-28
## About
- [TogoID](https://togoid.dbcls.jp/) は、直感的なインターフェースにより生命科学系データベース(DB)間のつながりを探索的に確認しながらID変換を行うことができるウェブアプリケーションです。同一の実体を指すID間の変換だけでなく、関連する別のカテゴリーのIDへの変換も可能です。また、直接リンクされていないDBのID間でも、他のDBを経由した変換を探索することができます。
@@ -10,7 +10,7 @@ Datasets last updated: 2024-10-21
## 動画マニュアル
- [TogoIDを使って生命科学系データベースのさまざまなIDを探索的に変換する](https://youtu.be/gXnvm6Fn4R8)
-## 統計 (2024-10-21)
+## 統計 (2024-10-28)
- 対象データセット数
- 105 (73 のデータベースに由来)
- 対象DBの詳細やID例については、"DATASETS" タブ からご覧いただけます。
diff --git a/docs/news.md b/docs/news.md
index e363ffb2..a7743e24 100644
--- a/docs/news.md
+++ b/docs/news.md
@@ -1,9 +1,7 @@
-# 2024-09-06
-*New features released!*
-- You can now display labels for IDs by toggling the "Show labels" switch in the results table.
-- In the LABEL2ID tab, you can convert labels into IDs (e.g., gene symbols to NCBI Gene IDs or disease names to MONDO IDs).
-- TogoID now supports handling multiple semantic relations between the same dataset pair (e.g., try converting between GlyTouCan and UniProt).
-A detailed document is currently being prepared.
+
+# 2024-10-28
+- Weekly update has been completed.
+- The documentation has been updated. Please see the DOCUMENTS tab to learn about TogoID's features including recent developments.
# 2024-10-21
- Weekly update has been completed.
@@ -28,6 +26,12 @@ A detailed document is currently being prepared.
# 2024-09-09
- Weekly update has been completed.
+# 2024-09-06
+*New features released!*
+- You can now display labels for IDs by toggling the "Show labels" switch in the results table.
+- In the LABEL2ID tab, you can convert labels into IDs (e.g., gene symbols to NCBI Gene IDs or disease names to MONDO IDs).
+- TogoID now supports handling multiple semantic relations between the same dataset pair (e.g., try converting between GlyTouCan and UniProt).
+
# 2024-09-05
- Weekly update has been completed.
diff --git a/log/config-summary.tsv b/log/config-summary.tsv
index 5d8f8166..4cefd7b4 100644
--- a/log/config-summary.tsv
+++ b/log/config-summary.tsv
@@ -60,21 +60,21 @@ glycomotif-glytoucan FIXME Glycan GlycoMotif http://glycomotif.glyomics.org/glyc
glytoucan-doid nbdc01535 Glycan GlyTouCan http://identifiers.org/glytoucan/ nbdc00261 Phenotype Disease ontology http://purl.obolibrary.org/obo/DOID_ tio:TIO_000010 has related phenotype has related phenotype tio:TIO_000011 phenotype is related with is related with threeTimesAYear "sh retrieve.sh"
glytoucan-ncbigene nbdc01535 Glycan GlyTouCan http://identifiers.org/glytoucan/ nbdc00073 Gene NCBI Gene http://identifiers.org/ncbigene/ tio:TIO_000099 glycan is processed by protein coded by gene is processed by protein coded by gene tio:TIO_000098 gene codes protein to process glycan codes protein to process glycan threeTimesAYear "sparql_csv2tsv.sh query.rq https://ts.glycosmos.org/sparql"
glytoucan-uniprot nbdc01535 Glycan GlyTouCan http://identifiers.org/glytoucan/ nbdc00221 Protein UniProt http://purl.uniprot.org/uniprot/ tio:TIO_000060 glycan is attached to protein is attached to tio:TIO_000061 protein is modified with glycan is modified with threeTimesAYear "sparql_csv2tsv.sh query.rq https://ts.glycosmos.org/sparql"
-hgnc-ccds nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00023 Gene Consensus CDS http://identifiers.org/ccds/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$25{gsub(\"\\\"\",\"\",$25); split($25,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
-hgnc-ec nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc01883 Function Enzyme nomenclature http://identifiers.org/ec-code/ tio:TIO_000028 sequence has EC number has EC number tio:TIO_000029 is EC number of sequence is EC number of Bimonthly "awk -F \"\\t\" 'FNR>=2&&$47{gsub(\"\\\"\",\"\",$47); split($47,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
-hgnc-ensembl_gene nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00054 Gene Ensembl gene http://identifiers.org/ensembl/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$20{gsub(\"\\\"\",\"\",$20); split($20,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
-hgnc-hgnc_symbol nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc01774 Gene HGNC gene symbol http://identifiers.org/hgnc.symbol/ tio:TIO_000022 has synonym has synonym tio:TIO_000023 is synonym of is synonym of Bimonthly "awk -F \"\\t\" 'FNR>=2&&$2{print substr($1,6) \"\\t\" $2}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
-hgnc-insdc nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc02567 Gene GenBank/ENA/DDBJ http://identifiers.org/insdc/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$23{gsub(\"\\\"\",\"\",$23); split($23,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
-hgnc-lrg nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc02566 Gene LRG http://identifiers.org/lrg/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$30{gsub(\"\\\"\",\"\",$30); split($30,a,\"|\"); for(k in a){if(a[k]~/^LRG_[0-9]+$/) print substr($1,6) \"\\t\" a[k]}}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
-hgnc-mgi_gene nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00135 Gene MGI gene http://identifiers.org/mgi/MGI: tio:TIO_000017 sequence is orthologous to sequence is orthologous to tio:TIO_000017 sequence is orthologous to sequence is orthologous to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$28{gsub(\"\\\"\",\"\",$28); split($28,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" substr(a[k],5)}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
-hgnc-mirbase nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00136 Transcript miRBase http://identifiers.org/mirbase/ tio:TIO_000035 gene is transcribed to transcript is transcribed to tio:TIO_000034 transcript is transcribed from gene is transcribed from Bimonthly "awk -F \"\\t\" 'FNR>=2&&$33{gsub(\"\\\"\",\"\",$33); split($33,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
-hgnc-ncbigene nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00073 Gene NCBI Gene http://identifiers.org/ncbigene/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$19{gsub(\"\\\"\",\"\",$19); split($19,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
-hgnc-omim_gene nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00154 Gene OMIM gene http://identifiers.org/mim/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$32{gsub(\"\\\"\",\"\",$32); split($32,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
-hgnc-pubmed nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00179 Literature PubMed http://rdf.ncbi.nlm.nih.gov/pubmed/ tio:TIO_000032 has reference has reference tio:TIO_000033 is reference of is reference of Bimonthly "awk -F \"\\t\" 'FNR>=2&&$27{gsub(\"\\\"\",\"\",$27); split($27,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
-hgnc-refseq_genomic nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00187 Gene RefSeq genomic http://identifiers.org/refseq/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$24{gsub(\"\\\"\",\"\",$24); split($24,a,\"|\"); for(k in a){if(a[k]~/^NG_/)print substr($1,6) \"\\t\" a[k]}}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
-hgnc-refseq_rna nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00187 Transcript RefSeq RNA http://identifiers.org/refseq/ tio:TIO_000035 gene is transcribed to transcript is transcribed to tio:TIO_000034 transcript is transcribed from gene is transcribed from Bimonthly "awk -F \"\\t\" 'FNR>=2&&$24{gsub(\"\\\"\",\"\",$24); split($24,a,\"|\"); for(k in a){if(a[k]~/^[NX][MR]_/)print substr($1,6) \"\\t\" a[k]}}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
-hgnc-rgd nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00188 Gene RGD http://identifiers.org/rgd/ tio:TIO_000017 sequence is orthologous to sequence is orthologous to tio:TIO_000017 sequence is orthologous to sequence is orthologous to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$29{gsub(\"\\\"\",\"\",$29); split($29,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" substr(a[k],5)}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
-hgnc-uniprot nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00221 Protein UniProt http://purl.uniprot.org/uniprot/ tio:TIO_000025 gene has protein as product has gene product tio:TIO_000024 protein is product of gene is product of gene Bimonthly "awk -F \"\\t\" 'FNR>=2&&$26{gsub(\"\\\"\",\"\",$26); split($26,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv"
+hgnc-ccds nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00023 Gene Consensus CDS http://identifiers.org/ccds/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$25{gsub(\"\\\"\",\"\",$25); split($25,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
+hgnc-ec nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc01883 Function Enzyme nomenclature http://identifiers.org/ec-code/ tio:TIO_000028 sequence has EC number has EC number tio:TIO_000029 is EC number of sequence is EC number of Bimonthly "awk -F \"\\t\" 'FNR>=2&&$47{gsub(\"\\\"\",\"\",$47); split($47,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
+hgnc-ensembl_gene nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00054 Gene Ensembl gene http://identifiers.org/ensembl/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$20{gsub(\"\\\"\",\"\",$20); split($20,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
+hgnc-hgnc_symbol nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc01774 Gene HGNC gene symbol http://identifiers.org/hgnc.symbol/ tio:TIO_000022 has synonym has synonym tio:TIO_000023 is synonym of is synonym of Bimonthly "awk -F \"\\t\" 'FNR>=2&&$2{print substr($1,6) \"\\t\" $2}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
+hgnc-insdc nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc02567 Gene GenBank/ENA/DDBJ http://identifiers.org/insdc/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$23{gsub(\"\\\"\",\"\",$23); split($23,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
+hgnc-lrg nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc02566 Gene LRG http://identifiers.org/lrg/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$30{gsub(\"\\\"\",\"\",$30); split($30,a,\"|\"); for(k in a){if(a[k]~/^LRG_[0-9]+$/) print substr($1,6) \"\\t\" a[k]}}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
+hgnc-mgi_gene nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00135 Gene MGI gene http://identifiers.org/mgi/MGI: tio:TIO_000017 sequence is orthologous to sequence is orthologous to tio:TIO_000017 sequence is orthologous to sequence is orthologous to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$28{gsub(\"\\\"\",\"\",$28); split($28,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" substr(a[k],5)}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
+hgnc-mirbase nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00136 Transcript miRBase http://identifiers.org/mirbase/ tio:TIO_000035 gene is transcribed to transcript is transcribed to tio:TIO_000034 transcript is transcribed from gene is transcribed from Bimonthly "awk -F \"\\t\" 'FNR>=2&&$33{gsub(\"\\\"\",\"\",$33); split($33,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
+hgnc-ncbigene nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00073 Gene NCBI Gene http://identifiers.org/ncbigene/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$19{gsub(\"\\\"\",\"\",$19); split($19,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
+hgnc-omim_gene nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00154 Gene OMIM gene http://identifiers.org/mim/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$32{gsub(\"\\\"\",\"\",$32); split($32,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
+hgnc-pubmed nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00179 Literature PubMed http://rdf.ncbi.nlm.nih.gov/pubmed/ tio:TIO_000032 has reference has reference tio:TIO_000033 is reference of is reference of Bimonthly "awk -F \"\\t\" 'FNR>=2&&$27{gsub(\"\\\"\",\"\",$27); split($27,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
+hgnc-refseq_genomic nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00187 Gene RefSeq genomic http://identifiers.org/refseq/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$24{gsub(\"\\\"\",\"\",$24); split($24,a,\"|\"); for(k in a){if(a[k]~/^NG_/)print substr($1,6) \"\\t\" a[k]}}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
+hgnc-refseq_rna nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00187 Transcript RefSeq RNA http://identifiers.org/refseq/ tio:TIO_000035 gene is transcribed to transcript is transcribed to tio:TIO_000034 transcript is transcribed from gene is transcribed from Bimonthly "awk -F \"\\t\" 'FNR>=2&&$24{gsub(\"\\\"\",\"\",$24); split($24,a,\"|\"); for(k in a){if(a[k]~/^[NX][MR]_/)print substr($1,6) \"\\t\" a[k]}}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
+hgnc-rgd nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00188 Gene RGD http://identifiers.org/rgd/ tio:TIO_000017 sequence is orthologous to sequence is orthologous to tio:TIO_000017 sequence is orthologous to sequence is orthologous to Bimonthly "awk -F \"\\t\" 'FNR>=2&&$29{gsub(\"\\\"\",\"\",$29); split($29,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" substr(a[k],5)}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
+hgnc-uniprot nbdc01774 Gene HGNC http://identifiers.org/hgnc/ nbdc00221 Protein UniProt http://purl.uniprot.org/uniprot/ tio:TIO_000025 gene has protein as product has gene product tio:TIO_000024 protein is product of gene is product of gene Bimonthly "awk -F \"\\t\" 'FNR>=2&&$26{gsub(\"\\\"\",\"\",$26); split($26,a,\"|\"); for(k in a)print substr($1,6) \"\\t\" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt"
hmdb-chebi nbdc00909 Compound HMDB http://identifiers.org/hmdb/ nbdc00027 Compound ChEBI compound http://purl.obolibrary.org/obo/CHEBI_ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Triennial "awk -F \"\\t\" '$2==\"chebi_id\"{print $1 \"\\t\" $3}' $TOGOID_ROOT/input/hmdb/hmdb_metabolites.tsv"
hmdb-inchi_key nbdc00909 Compound HMDB http://identifiers.org/hmdb/ FIXME Compound InChIKey http://identifiers.org/inchikey/ tio:TIO_000020 compound is represented as InChIKey is represented as tio:TIO_000021 InChIKey represents compound represents Triennial "awk -F \"\\t\" '$2==\"inchikey\"{print $1 \"\\t\" $3}' $TOGOID_ROOT/input/hmdb/hmdb_metabolites.tsv"
hmdb-pdb_ccd nbdc00909 Compound HMDB http://identifiers.org/hmdb/ nbdc01766 Compound PDB CCD http://identifiers.org/pdb-ccd/ tio:TIO_000001 is nearly equivalent to is nearly equivalent to tio:TIO_000001 is nearly equivalent to is nearly equivalent to Triennial "awk -F \"\\t\" '$2==\"pdb_id\"{print $1 \"\\t\" $3}' $TOGOID_ROOT/input/hmdb/hmdb_metabolites.tsv"
diff --git a/log/error.log b/log/error.log
index 1993b736..7b121420 100644
--- a/log/error.log
+++ b/log/error.log
@@ -7,7 +7,7 @@ Error: HTTP Error 502: Bad Gateway: https://api.alpha.glycosmos.org/partialmatch
# Error: output/tsv/glycomotif-glytoucan.tsv new file size per old 0 / 2804382 = 0.0 < 0.5
# Error: Failed to create output/tsv/glycomotif-glytoucan.tsv or created file was empty
# Error: output/tsv/glytoucan-doid.tsv new file size per old 1538 / 4376 = 0.35146252285191953 < 0.5
-# Error: output/tsv/hgnc-ccds.tsv new file size per old 260816 / 544502 = 0.47899915886443023 < 0.5
+# Error: output/tsv/hgnc-ccds.tsv new file size per old 252491 / 544502 = 0.46370995882476096 < 0.5
# Error: output/tsv/lipidmaps-chebi.tsv new file size per old 248 / 253350 = 0.0009788829682257747 < 0.5
# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML
# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML 503 Service Unavailable
@@ -59,6 +59,10 @@ Error: HTTP Error 502: Bad Gateway: https://api.alpha.glycosmos.org/partialmatch
# Error: output/tsv/lipidmaps-swisslipids.tsv seems to be malformed request due to maintenance downtime or capacity
# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML problems. Please try again later.
# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML
+# Error: output/tsv/mbgd_gene-uniprot.tsv new file size per old 0 / 4017692184 = 0.0 < 0.5
+# Error: Failed to create output/tsv/mbgd_gene-uniprot.tsv or created file was empty
+# Error: output/tsv/mbgd_organism-taxonomy.tsv new file size per old 0 / 81445 = 0.0 < 0.5
+# Error: Failed to create output/tsv/mbgd_organism-taxonomy.tsv or created file was empty
# Error: output/tsv/mondo-doid.tsv new file size per old 0 / 155460 = 0.0 < 0.5
# Error: Failed to create output/tsv/mondo-doid.tsv or created file was empty
# Error: output/tsv/mondo-hp_phenotype.tsv new file size per old 0 / 9184 = 0.0 < 0.5
diff --git a/log/pair_count.tsv b/log/pair_count.tsv
index 26195e27..94a8bb05 100644
--- a/log/pair_count.tsv
+++ b/log/pair_count.tsv
@@ -3,11 +3,11 @@ assembly_insdc-bioproject.tsv 2283159
assembly_insdc-biosample.tsv 2225812
assembly_insdc-insdc_master.tsv 2150193
bioproject-biosample.tsv 2546485
-bioproject-geo_series.tsv 218318
-bioproject-pubmed.tsv 280110
+bioproject-geo_series.tsv 218653
+bioproject-pubmed.tsv 280373
bioproject_umbrella-bioproject.tsv 104586
-biosample-bioproject.tsv 20027457
-biosample-geo_sample.tsv 9463924
+biosample-bioproject.tsv 20082284
+biosample-geo_sample.tsv 9478410
cellosaurus-ncit_disease.tsv 75821
cellosaurus-orphanet_phenotype.tsv 41448
chebi-glytoucan.tsv 10615
@@ -35,12 +35,12 @@ chembl_target-uniprot-TIO_000130.tsv 1533
chembl_target-uniprot-TIO_000132.tsv 1434
chembl_target-uniprot.tsv 9094
clinvar-dbsnp.tsv 2937807
-clinvar-hgnc.tsv 3048112
-clinvar-medgen.tsv 4176542
-clinvar-mondo.tsv 1989799
-clinvar-ncbigene.tsv 3048432
-clinvar-omim_phenotype.tsv 1636833
-clinvar-orphanet_phenotype.tsv 1861412
+clinvar-hgnc.tsv 3048477
+clinvar-medgen.tsv 4177072
+clinvar-mondo.tsv 1990261
+clinvar-ncbigene.tsv 3048797
+clinvar-omim_phenotype.tsv 1637242
+clinvar-orphanet_phenotype.tsv 1861848
clinvar-uniprot.tsv 20798
cog-insdc.tsv 115826
cog-refseq_protein.tsv 3340026
@@ -119,12 +119,12 @@ medgen-omim_phenotype.tsv 11043
medgen-orphanet_phenotype.tsv 9063
mgi_gene-ensembl_gene.tsv 56426
mgi_gene-hgnc.tsv 24587
-mgi_gene-mgi_allele.tsv 110465
+mgi_gene-mgi_allele.tsv 110480
mgi_gene-ncbigene.tsv 90618
mgi_gene-uniprot.tsv 79034
-mgi_genotype-doid.tsv 7837
-mgi_genotype-mgi_allele.tsv 124623
-mgi_genotype-mp.tsv 400910
+mgi_genotype-doid.tsv 7838
+mgi_genotype-mgi_allele.tsv 124681
+mgi_genotype-mp.tsv 401152
mondo-doid.tsv 10712
mondo-hp_phenotype.tsv 574
mondo-meddra.tsv 1486
@@ -132,26 +132,26 @@ mondo-mesh.tsv 8352
mondo-omim_phenotype.tsv 9693
mondo-orphanet_phenotype.tsv 10380
nando-mondo.tsv 2390
-ncbigene-ensembl_gene.tsv 11654277
-ncbigene-ensembl_protein.tsv 13449374
-ncbigene-ensembl_transcript.tsv 14177749
+ncbigene-ensembl_gene.tsv 11638524
+ncbigene-ensembl_protein.tsv 13403395
+ncbigene-ensembl_transcript.tsv 14090731
ncbigene-flybase_gene.tsv 25078
-ncbigene-go.tsv 101431326
-ncbigene-hgnc.tsv 43828
-ncbigene-mgi_gene.tsv 71683
+ncbigene-go.tsv 101708425
+ncbigene-hgnc.tsv 43830
+ncbigene-mgi_gene.tsv 71682
ncbigene-mirbase.tsv 17541
-ncbigene-omim_gene.tsv 18530
-ncbigene-refseq_genomic.tsv 211763
-ncbigene-refseq_protein.tsv 68719760
-ncbigene-refseq_rna.tsv 66732541
+ncbigene-omim_gene.tsv 18536
+ncbigene-refseq_genomic.tsv 211761
+ncbigene-refseq_protein.tsv 69014178
+ncbigene-refseq_rna.tsv 67056457
ncbigene-rgd.tsv 47288
ncbigene-sgd.tsv 6471
ncbigene-tair.tsv 32835
-ncbigene-taxonomy.tsv 56873692
+ncbigene-taxonomy.tsv 57139197
ncbigene-vgnc.tsv 112162
ncbigene-wormbase_gene.tsv 28779
ncbigene-xenbase_gene.tsv 46842
-ncbigene-zfin_gene.tsv 27163
+ncbigene-zfin_gene.tsv 27161
ncit_disease-ncit_tissue.tsv 27199
oma_protein-ensembl_gene.tsv 2533621
oma_protein-ensembl_transcript.tsv 2925554
@@ -170,14 +170,14 @@ pdb-interpro.tsv 726658
pdb-pdb_ccd.tsv 530587
pdb-pfam.tsv 339565
pdb-uniprot.tsv 341431
-pmc-pubmed.tsv 9575886
+pmc-pubmed.tsv 9593110
prosite-prosite_prorule.tsv 1455
pubchem_compound-atc.tsv 4965
pubchem_compound-chebi.tsv 174843
pubchem_compound-chembl_compound.tsv 2372556
pubchem_compound-drugbank.tsv 10789
pubchem_compound-glytoucan.tsv 69203
-pubchem_compound-inchi_key.tsv 118727283
+pubchem_compound-inchi_key.tsv 118728820
pubchem_pathway-ncbigene.tsv 33861
pubchem_pathway-pathbank.tsv 69387
pubchem_pathway-pubchem_compound.tsv 1253395
@@ -195,7 +195,7 @@ reactome_reaction-go.tsv 3318
reactome_reaction-iuphar_ligand.tsv 14709
reactome_reaction-mirbase.tsv 194
reactome_reaction-uniprot.tsv 679876
-refseq_protein-uniprot.tsv 154618423
+refseq_protein-uniprot.tsv 154618874
refseq_rna-dbsnp.tsv 267059416
refseq_rna-hgnc.tsv 227230
refseq_rna-ncbigene.tsv 65546825
@@ -209,28 +209,28 @@ rhea-go.tsv 4435
rhea-pubmed.tsv 142680
rhea-reactome_reaction.tsv 1511
rhea-uniprot.tsv 41448659
-sra_accession-bioproject.tsv 529783
-sra_accession-biosample.tsv 31699855
-sra_accession-sra_analysis.tsv 329243
-sra_accession-sra_experiment.tsv 35659853
-sra_accession-sra_project.tsv 617870
-sra_accession-sra_run.tsv 40455586
-sra_accession-sra_sample.tsv 34436063
-sra_experiment-bioproject.tsv 31083409
-sra_experiment-biosample.tsv 31394401
-sra_experiment-sra_project.tsv 31427930
-sra_experiment-sra_sample.tsv 31427737
-sra_project-bioproject.tsv 533225
-sra_run-bioproject.tsv 32951299
-sra_run-biosample.tsv 33259254
-sra_run-sra_experiment.tsv 33317034
-sra_run-sra_project.tsv 33308594
-sra_run-sra_sample.tsv 33294197
-sra_sample-biosample.tsv 31720969
+sra_accession-bioproject.tsv 535765
+sra_accession-biosample.tsv 31924194
+sra_accession-sra_analysis.tsv 329255
+sra_accession-sra_experiment.tsv 35778526
+sra_accession-sra_project.tsv 619680
+sra_accession-sra_run.tsv 40578279
+sra_accession-sra_sample.tsv 34520229
+sra_experiment-bioproject.tsv 31409027
+sra_experiment-biosample.tsv 31744486
+sra_experiment-sra_project.tsv 31753548
+sra_experiment-sra_sample.tsv 31753271
+sra_project-bioproject.tsv 535784
+sra_run-bioproject.tsv 33277499
+sra_run-biosample.tsv 33629100
+sra_run-sra_experiment.tsv 33641296
+sra_run-sra_project.tsv 33634794
+sra_run-sra_sample.tsv 33637946
+sra_sample-biosample.tsv 31938462
swisslipids-chebi.tsv 4276
swisslipids-hmdb.tsv 26026
swisslipids-inchi_key.tsv 593209
-taxonomy-pubmed.tsv 50481
+taxonomy-pubmed.tsv 50461
togovar-clinvar.tsv 745335
togovar-dbsnp.tsv 66877211
togovar-ensembl_gene.tsv 72473309
@@ -270,4 +270,4 @@ wikipathways-hmdb.tsv 4125
wikipathways-lipidmaps.tsv 1398
wikipathways-ncbigene.tsv 30268
wikipathways-uniprot.tsv 33518
-total 5184078473
+total 5188977489
diff --git a/log/pair_count_history.tsv b/log/pair_count_history.tsv
index 6103348d..223cf156 100644
--- a/log/pair_count_history.tsv
+++ b/log/pair_count_history.tsv
@@ -61,3 +61,4 @@ Date affy_probeset-ncbigene assembly_insdc-bioproject assembly_insdc-biosample a
2024-10-08 19063 2283159 2225812 2150193 2546485 217446 278826 104586 19938580 9431518 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937745 3025875 4162525 1986846 3026191 1634429 1859346 20797 115826 3340026 4019 4849 5671 54855 12969337 15910019 47792 14749031 5546630 12969340 224377 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2049 41234 43873 21166 1325 24071 1912 43815 17277 34911 13531 28774 18940 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56428 24587 110373 90619 79034 7837 124602 400771 10712 574 1486 8352 9693 10380 2390 11660930 13459019 14189546 25078 101043576 43829 71684 17541 18526 211759 68060620 66432148 47288 6471 32835 56251350 112162 28779 46842 27163 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9547208 1455 4965 174843 2372556 10789 69203 118680448 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 168636384 267059416 227230 65546825 190869 6191600 56922967 65576846 216654 7719 4435 142680 1511 41448659 529030 31645689 329141 35486202 615018 40263951 34290431 30997361 31319829 31341882 31341689 532472 32860319 33183885 33225215 33217614 33206609 31666803 4276 26026 593209 50523 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 11471 1148 4119 1398 30258 33518 5194479012
2024-10-12 19063 2283159 2225812 2150193 2546485 217809 279413 104586 19988521 9447146 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937791 3044255 4171173 1988452 3044575 1635664 1860371 20798 115826 3340026 4019 4849 5671 54855 12969337 15910019 47792 14749031 5546630 12969340 224377 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2049 41234 43873 21166 1325 24071 1912 43815 17277 34911 13531 28774 18940 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24587 110437 90618 79034 7837 124623 400910 10712 574 1486 8352 9693 10380 2390 11654277 13449374 14177749 25078 101041913 43827 71684 17541 18527 211762 68217911 66619410 47288 6471 32835 56353463 112162 28779 46842 27163 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9561234 1455 4965 174843 2372556 10789 69203 118680448 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154618594 267059416 227230 65546825 190869 6191600 56922967 65576846 216654 7719 4435 142680 1511 41448659 529462 31680248 329243 35570093 616586 40350221 34372201 31035975 31352287 31380496 31380303 532904 32903026 33216964 33268661 33260321 33246345 31701362 4276 26026 593209 50493 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 11471 1148 4119 1398 30258 33518 5181681751
2024-10-19 19063 2283159 2225812 2150193 2546485 218318 280110 104586 20027457 9463924 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937807 3048112 4176542 1989799 3048432 1636833 1861412 20798 115826 3340026 4019 4849 5671 55423 12969337 15910019 47792 14749031 5546630 12969340 241195 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2083 41244 43882 21162 1325 24072 1912 43813 17320 34994 13532 28776 18945 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24587 110465 90618 79034 7837 124623 400910 10712 574 1486 8352 9693 10380 2390 11654277 13449374 14177749 25078 101431326 43828 71683 17541 18530 211763 68719760 66732541 47288 6471 32835 56873692 112162 28779 46842 27163 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9575886 1455 4965 174843 2372556 10789 69203 118727283 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154618423 267059416 227230 65546825 190869 6191600 56922967 65576846 216654 7719 4435 142680 1511 41448659 529783 31699855 329243 35659853 617870 40455586 34436063 31083409 31394401 31427930 31427737 533225 32951299 33259254 33317034 33308594 33294197 31720969 4276 26026 593209 50481 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 11471 1148 4125 1398 30268 33518 5184078473
+2024-10-26 19063 2283159 2225812 2150193 2546485 218653 280373 104586 20082284 9478410 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937807 3048477 4177072 1990261 3048797 1637242 1861848 20798 115826 3340026 4019 4849 5671 55423 12969337 15910019 47792 14749031 5546630 12969340 241195 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2083 41244 43882 21162 1325 24072 1912 43813 17320 34994 13532 28776 18945 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24587 110480 90618 79034 7838 124681 401152 10712 574 1486 8352 9693 10380 2390 11638524 13403395 14090731 25078 101708425 43830 71682 17541 18536 211761 69014178 67056457 47288 6471 32835 57139197 112162 28779 46842 27161 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9593110 1455 4965 174843 2372556 10789 69203 118728820 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154618874 267059416 227230 65546825 190869 6191600 56922967 65576846 216654 7719 4435 142680 1511 41448659 535765 31924194 329255 35778526 619680 40578279 34520229 31409027 31744486 31753548 31753271 535784 33277499 33629100 33641296 33634794 33637946 31938462 4276 26026 593209 50461 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 11471 1148 4125 1398 30268 33518 5188977489
diff --git a/log/update.log b/log/update.log
index 4038cb62..4b29fb4b 100644
--- a/log/update.log
+++ b/log/update.log
@@ -1,16 +1,16 @@
-*** Started: 2024-10-18T17:00:14 ***
+*** Started: 2024-10-25T17:00:19 ***
## Prepare input files for BioProject
# Checking lock file input/bioproject/download.lock for download
-# Local file time: 2024-10-10 18:17:58 +0900 (input/bioproject/bioproject.xml)
-# Remote file time: 2024-10-17 09:12:35 +0000 (https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml)
+# Local file time: 2024-10-17 18:12:35 +0900 (input/bioproject/bioproject.xml)
+# Remote file time: 2024-10-24 09:14:57 +0000 (https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/bioproject https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml
python bin/bioproject_xml2tsv.py input/bioproject/bioproject.xml > input/bioproject/bioproject.tsv
# Overwriting timestamp of the input/bioproject/download.lock
## Prepare input files for BioSample
# Checking lock file input/biosample/download.lock for download
-# Local file time: 2024-10-10 22:22:21 +0900 (input/biosample/biosample_set.xml.gz)
-# Remote file time: 2024-10-16 13:26:30 +0000 (https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz)
+# Local file time: 2024-10-16 22:26:30 +0900 (input/biosample/biosample_set.xml.gz)
+# Remote file time: 2024-10-24 13:25:40 +0000 (https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/biosample https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz
gzip -dc input/biosample/biosample_set.xml.gz > input/biosample/biosample_set.xml
python bin/biosample_xml2tsv.py input/biosample/biosample_set.xml > input/biosample/biosample_set.tsv
@@ -24,14 +24,14 @@ python bin/biosample_xml2tsv.py input/biosample/biosample_set.xml > input/biosam
# Preserving timestamp of the input/cellosaurus/download.lock
## Prepare input files for ClinVar
# Checking lock file input/clinvar/download.lock for download
-# Local file time: 2024-10-10 13:16:17 +0900 (input/clinvar/variant_summary.txt.gz)
-# Remote file time: 2024-10-15 10:16:04 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz)
+# Local file time: 2024-10-15 19:16:04 +0900 (input/clinvar/variant_summary.txt.gz)
+# Remote file time: 2024-10-21 10:26:25 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/clinvar https://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz
gzip -dc input/clinvar/variant_summary.txt.gz > input/clinvar/variant_summary.txt
# Overwriting timestamp of the input/clinvar/download.lock
## Prepare input files for Ensembl
# Checking lock file input/ensembl/download.lock for download
-# File input/ensembl/taxonomy.txt is created 7.002186946860451 days ago (will be updated when >5 days)
+# File input/ensembl/taxonomy.txt is created 6.999682719640359 days ago (will be updated when >5 days)
sparql_csv2tsv.sh input/ensembl/taxonomy.rq https://rdfportal.org/ebi/sparql > input/ensembl/taxonomy.txt
# Overwriting timestamp of the input/ensembl/download.lock
## Prepare input files for GlyTouCan
@@ -49,10 +49,11 @@ sparql_csv2tsv.sh bin/sparql/glycogene-uniprot.rq https://ts.glycosmos.org/sparq
# Preserving timestamp of the input/hmdb/download.lock
## Prepare input files for HGNC
# Checking lock file input/hgnc/download.lock for download
-# Local file time: 2024-08-23 22:51:49 +0900 (input/hgnc/hgnc_complete_set.tsv)
-# Remote file time: 2024-10-15 15:54:20 +0000 (https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt)
-wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/hgnc https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt
-# Overwriting timestamp of the input/hgnc/download.lock
+# Local file time: 2024-10-19 02:02:15 +0900 (input/hgnc/hgnc_complete_set.txt)
+# Remote file time: 2024-10-18 17:02:15 +0000 (https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt)
+# Local file size: 16204004 (input/hgnc/hgnc_complete_set.txt)
+# Remote file size: 16204004 (https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt)
+# Preserving timestamp of the input/hgnc/download.lock
## Prepare input files for Homologene
# Checking lock file input/homologene/download.lock for download
Error: check_remote_file_time(input/homologene/homologene.data, https://ftp.ncbi.nlm.nih.gov/pub/HomoloGene/current/homologene.data): no time information in ""
@@ -100,49 +101,49 @@ bin/sparql_csv2tsv.sh bin/sparql/hp_category.rq https://rdfportal.org/bioportal/
# Preserving timestamp of the input/interpro/download.lock
## Prepare input files for MGI_GENE
# Checking lock file input/mgi_gene/download.lock for download
-# Local file time: 2024-10-07 21:04:47 +0900 (input/mgi_gene/MRK_List2.rpt)
-# Remote file time: 2024-10-14 12:02:19 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt)
+# Local file time: 2024-10-14 21:02:19 +0900 (input/mgi_gene/MRK_List2.rpt)
+# Remote file time: 2024-10-21 12:02:28 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt
-# Local file time: 2024-10-07 21:02:34 +0900 (input/mgi_gene/MGI_Gene_Model_Coord.rpt)
-# Remote file time: 2024-10-14 12:01:06 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt)
+# Local file time: 2024-10-14 21:01:06 +0900 (input/mgi_gene/MGI_Gene_Model_Coord.rpt)
+# Remote file time: 2024-10-21 12:01:08 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt
-# Local file time: 2024-10-07 21:05:03 +0900 (input/mgi_gene/MRK_SwissProt_TrEMBL.rpt)
-# Remote file time: 2024-10-14 12:02:26 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt)
+# Local file time: 2024-10-14 21:02:26 +0900 (input/mgi_gene/MRK_SwissProt_TrEMBL.rpt)
+# Remote file time: 2024-10-21 12:02:36 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt
-# Local file time: 2024-10-07 21:01:19 +0900 (input/mgi_gene/HGNC_AllianceHomology.rpt)
-# Remote file time: 2024-10-14 12:00:40 +0000 (https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt)
+# Local file time: 2024-10-14 21:00:40 +0900 (input/mgi_gene/HGNC_AllianceHomology.rpt)
+# Remote file time: 2024-10-21 12:00:34 +0000 (https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt
-# Local file time: 2024-10-07 21:04:00 +0900 (input/mgi_gene/MGI_PhenotypicAllele.rpt)
-# Remote file time: 2024-10-14 12:01:57 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt)
+# Local file time: 2024-10-14 21:01:57 +0900 (input/mgi_gene/MGI_PhenotypicAllele.rpt)
+# Remote file time: 2024-10-21 12:01:59 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt
# Overwriting timestamp of the input/mgi_gene/download.lock
## Prepare input files for MGI_GENOTYPE
# Checking lock file input/mgi_genotype/download.lock for download
-# Local file time: 2024-10-07 21:02:11 +0900 (input/mgi_genotype/MGI_DiseaseGeneModel.rpt)
-# Remote file time: 2024-10-14 12:00:59 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt)
+# Local file time: 2024-10-14 21:00:59 +0900 (input/mgi_genotype/MGI_DiseaseGeneModel.rpt)
+# Remote file time: 2024-10-21 12:00:58 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_genotype https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt
ruby bin/query_mousemine.rb > input/mgi_genotype/mousemine_genotype.tsv
# Overwriting timestamp of the input/mgi_genotype/download.lock
## Prepare input files for NCBI Gene
# Checking lock file input/ncbigene/download.lock for download
-# Local file time: 2024-10-11 12:22:50 +0900 (input/ncbigene/gene2refseq.gz)
-# Remote file time: 2024-10-18 02:43:22 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz)
+# Local file time: 2024-10-18 11:43:22 +0900 (input/ncbigene/gene2refseq.gz)
+# Remote file time: 2024-10-25 02:46:55 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz
gzip -dc input/ncbigene/gene2refseq.gz > input/ncbigene/gene2refseq
-# Local file time: 2024-10-11 12:18:15 +0900 (input/ncbigene/gene2ensembl.gz)
-# Remote file time: 2024-10-18 02:38:38 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz)
+# Local file time: 2024-10-18 11:38:38 +0900 (input/ncbigene/gene2ensembl.gz)
+# Remote file time: 2024-10-25 02:42:29 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz
gzip -dc input/ncbigene/gene2ensembl.gz > input/ncbigene/gene2ensembl
-# Local file time: 2024-10-11 12:19:54 +0900 (input/ncbigene/gene2go.gz)
-# Remote file time: 2024-10-18 02:40:28 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz)
+# Local file time: 2024-10-18 11:40:28 +0900 (input/ncbigene/gene2go.gz)
+# Remote file time: 2024-10-25 02:44:07 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz
gzip -dc input/ncbigene/gene2go.gz > input/ncbigene/gene2go
-# Local file time: 2024-10-11 12:29:43 +0900 (input/ncbigene/Homo_sapiens.gene_info.gz)
-# Remote file time: 2024-10-18 02:50:35 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz)
+# Local file time: 2024-10-18 11:50:35 +0900 (input/ncbigene/Homo_sapiens.gene_info.gz)
+# Remote file time: 2024-10-25 02:53:54 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz
gzip -dc input/ncbigene/Homo_sapiens.gene_info.gz > input/ncbigene/Homo_sapiens.gene_info
-# Local file time: 2024-10-11 12:24:45 +0900 (input/ncbigene/gene_info.gz)
-# Remote file time: 2024-10-18 02:45:19 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz)
+# Local file time: 2024-10-18 11:45:19 +0900 (input/ncbigene/gene_info.gz)
+# Remote file time: 2024-10-25 02:48:53 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz
gzip -dc input/ncbigene/gene_info.gz > input/ncbigene/gene_info
# Overwriting timestamp of the input/ncbigene/download.lock
@@ -163,8 +164,8 @@ gzip -dc input/ncbigene/gene_info.gz > input/ncbigene/gene_info
# Preserving timestamp of the input/oma_protein/download.lock
## Prepare input files for PMC
# Checking lock file input/pmc/download.lock for download
-# Local file time: 2024-10-11 18:14:29 +0900 (input/pmc/PMC-ids.csv.gz)
-# Remote file time: 2024-10-18 09:41:21 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz)
+# Local file time: 2024-10-18 18:41:21 +0900 (input/pmc/PMC-ids.csv.gz)
+# Remote file time: 2024-10-25 09:20:12 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/pmc https://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz
gzip -dc input/pmc/PMC-ids.csv.gz > input/pmc/PMC-ids.csv
# Overwriting timestamp of the input/pmc/download.lock
@@ -232,8 +233,8 @@ gzip -dc input/pmc/PMC-ids.csv.gz > input/pmc/PMC-ids.csv
# Preserving timestamp of the input/reactome/download.lock
## Prepare input files for RefSeq Protein
# Checking lock file input/refseq_protein/download.lock for download
-# Local file time: 2024-10-10 18:23:10 +0900 (input/refseq_protein/gene_refseq_uniprotkb_collab.gz)
-# Remote file time: 2024-10-17 09:22:58 +0000 (https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz)
+# Local file time: 2024-10-17 18:22:58 +0900 (input/refseq_protein/gene_refseq_uniprotkb_collab.gz)
+# Remote file time: 2024-10-24 09:23:16 +0000 (https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/refseq_protein https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz
# Overwriting timestamp of the input/refseq_protein/download.lock
## Prepare input files for RefSeq RNA
@@ -260,8 +261,8 @@ wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-
# Preserving timestamp of the input/rhea/download.lock
## Prepare input files for SRA
# Checking lock file input/sra/download.lock for download
-# Local file time: 2024-10-12 00:52:48 +0900 (input/sra/SRA_Accessions.tab)
-# Remote file time: 2024-10-17 18:52:52 +0000 (https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab)
+# Local file time: 2024-10-18 03:52:52 +0900 (input/sra/SRA_Accessions.tab)
+# Remote file time: 2024-10-24 16:48:04 +0000 (https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/sra https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab
# Overwriting timestamp of the input/sra/download.lock
## Prepare input files for SwissLipids
@@ -285,214 +286,214 @@ wget --quiet --no-check-certificate -O input/uniprot/uniprot_reference_proteome.
# Preserving timestamp of the input/uniprot/download.lock
## Prepare input files for Taxonomy
# Checking lock file input/taxonomy/download.lock for download
-# Local file time: 2024-10-11 19:29:08 +0900 (input/taxonomy/taxdump.tar.gz)
-# Remote file time: 2024-10-18 10:28:22 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz)
+# Local file time: 2024-10-18 19:28:22 +0900 (input/taxonomy/taxdump.tar.gz)
+# Remote file time: 2024-10-25 10:28:30 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz)
wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/taxonomy https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz
mkdir -p input/taxonomy/taxdump && tar xzf input/taxonomy/taxdump.tar.gz -C input/taxonomy/taxdump/
# Overwriting timestamp of the input/taxonomy/download.lock
### Update TSV for affy_probeset-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/affy_probeset-ncbigene.tsv is newer than config/affy_probeset-ncbigene/config.yaml
# File output/tsv/affy_probeset-ncbigene.tsv has no timestamp file
-# File output/tsv/affy_probeset-ncbigene.tsv is created 7.0037154692549075 days ago (will be updated when >5 days)
+# File output/tsv/affy_probeset-ncbigene.tsv is created 6.998941319451967 days ago (will be updated when >5 days)
## Update config/affy_probeset-ncbigene/config.yaml => output/tsv/affy_probeset-ncbigene.tsv
-< 2024-10-18T20:16:23 affy_probeset-ncbigene
+< 2024-10-25T20:14:52 affy_probeset-ncbigene
togoid-config config/affy_probeset-ncbigene update
# Success: output/tsv/affy_probeset-ncbigene.tsv is updated
-> 2024-10-18T20:16:24 affy_probeset-ncbigene
+> 2024-10-25T20:14:53 affy_probeset-ncbigene
Rule for TSV (output/tsv/affy_probeset-ncbigene.tsv)
------------------------------
Investigating output/tsv/affy_probeset-ncbigene.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:16:24 +0900
+timestamp: 2024-10-25 20:14:53 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for assembly_insdc-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/assembly_insdc-bioproject.tsv is newer than config/assembly_insdc-bioproject/config.yaml
# File output/tsv/assembly_insdc-bioproject.tsv has no timestamp file
-# File output/tsv/assembly_insdc-bioproject.tsv is created 7.003699165777813 days ago (will be updated when >5 days)
+# File output/tsv/assembly_insdc-bioproject.tsv is created 6.998922003844143 days ago (will be updated when >5 days)
## Update config/assembly_insdc-bioproject/config.yaml => output/tsv/assembly_insdc-bioproject.tsv
-< 2024-10-18T20:16:24 assembly_insdc-bioproject
+< 2024-10-25T20:14:53 assembly_insdc-bioproject
togoid-config config/assembly_insdc-bioproject update
# Success: output/tsv/assembly_insdc-bioproject.tsv is updated
-> 2024-10-18T20:16:26 assembly_insdc-bioproject
+> 2024-10-25T20:14:55 assembly_insdc-bioproject
Rule for TSV (output/tsv/assembly_insdc-bioproject.tsv)
------------------------------
Investigating output/tsv/assembly_insdc-bioproject.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:16:26 +0900
+timestamp: 2024-10-25 20:14:55 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for assembly_insdc-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/assembly_insdc-biosample.tsv is newer than config/assembly_insdc-biosample/config.yaml
# File output/tsv/assembly_insdc-biosample.tsv has no timestamp file
-# File output/tsv/assembly_insdc-biosample.tsv is created 7.00369982419397 days ago (will be updated when >5 days)
+# File output/tsv/assembly_insdc-biosample.tsv is created 6.998919340252026 days ago (will be updated when >5 days)
## Update config/assembly_insdc-biosample/config.yaml => output/tsv/assembly_insdc-biosample.tsv
-< 2024-10-18T20:16:26 assembly_insdc-biosample
+< 2024-10-25T20:14:55 assembly_insdc-biosample
togoid-config config/assembly_insdc-biosample update
# Success: output/tsv/assembly_insdc-biosample.tsv is updated
-> 2024-10-18T20:16:29 assembly_insdc-biosample
+> 2024-10-25T20:14:58 assembly_insdc-biosample
Rule for TSV (output/tsv/assembly_insdc-biosample.tsv)
------------------------------
Investigating output/tsv/assembly_insdc-biosample.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:16:29 +0900
+timestamp: 2024-10-25 20:14:58 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for assembly_insdc-insdc_master if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/assembly_insdc-insdc_master.tsv is newer than config/assembly_insdc-insdc_master/config.yaml
# File output/tsv/assembly_insdc-insdc_master.tsv has no timestamp file
-# File output/tsv/assembly_insdc-insdc_master.tsv is created 7.003700025572165 days ago (will be updated when >5 days)
+# File output/tsv/assembly_insdc-insdc_master.tsv is created 6.998925816178044 days ago (will be updated when >5 days)
## Update config/assembly_insdc-insdc_master/config.yaml => output/tsv/assembly_insdc-insdc_master.tsv
-< 2024-10-18T20:16:29 assembly_insdc-insdc_master
+< 2024-10-25T20:14:58 assembly_insdc-insdc_master
togoid-config config/assembly_insdc-insdc_master update
# Success: output/tsv/assembly_insdc-insdc_master.tsv is updated
-> 2024-10-18T20:16:31 assembly_insdc-insdc_master
+> 2024-10-25T20:15:00 assembly_insdc-insdc_master
Rule for TSV (output/tsv/assembly_insdc-insdc_master.tsv)
------------------------------
Investigating output/tsv/assembly_insdc-insdc_master.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:16:31 +0900
+timestamp: 2024-10-25 20:15:00 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for bioproject-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/bioproject-biosample.tsv is newer than config/bioproject-biosample/config.yaml
# File output/tsv/bioproject-biosample.tsv is older than input/bioproject/download.lock
## Update config/bioproject-biosample/config.yaml => output/tsv/bioproject-biosample.tsv
-< 2024-10-18T20:16:31 bioproject-biosample
+< 2024-10-25T20:15:00 bioproject-biosample
togoid-config config/bioproject-biosample update
# Success: output/tsv/bioproject-biosample.tsv is updated
-> 2024-10-18T20:16:34 bioproject-biosample
+> 2024-10-25T20:15:03 bioproject-biosample
Rule for TSV (output/tsv/bioproject-biosample.tsv)
------------------------------
Investigating output/tsv/bioproject-biosample.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:16:34 +0900
+timestamp: 2024-10-25 20:15:03 +0900
pre-requisites:
--output/tsv/ ()
---prepare:bioproject (2024-10-18 20:16:34 +0900)
-latest-prerequisite time: 2024-10-18 20:16:34 +0900
+--prepare:bioproject (2024-10-25 20:15:03 +0900)
+latest-prerequisite time: 2024-10-25 20:15:03 +0900
................................
### Update TSV for bioproject-geo_series if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/bioproject-geo_series.tsv is newer than config/bioproject-geo_series/config.yaml
# File output/tsv/bioproject-geo_series.tsv is older than input/bioproject/download.lock
## Update config/bioproject-geo_series/config.yaml => output/tsv/bioproject-geo_series.tsv
-< 2024-10-18T20:16:34 bioproject-geo_series
+< 2024-10-25T20:15:03 bioproject-geo_series
togoid-config config/bioproject-geo_series update
# Success: output/tsv/bioproject-geo_series.tsv is updated
-> 2024-10-18T20:16:36 bioproject-geo_series
+> 2024-10-25T20:15:06 bioproject-geo_series
Rule for TSV (output/tsv/bioproject-geo_series.tsv)
------------------------------
Investigating output/tsv/bioproject-geo_series.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:16:36 +0900
+timestamp: 2024-10-25 20:15:06 +0900
pre-requisites:
--output/tsv/ ()
---prepare:bioproject (2024-10-18 20:16:36 +0900)
-latest-prerequisite time: 2024-10-18 20:16:36 +0900
+--prepare:bioproject (2024-10-25 20:15:06 +0900)
+latest-prerequisite time: 2024-10-25 20:15:06 +0900
................................
### Update TSV for bioproject-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/bioproject-pubmed.tsv is newer than config/bioproject-pubmed/config.yaml
# File output/tsv/bioproject-pubmed.tsv is older than input/bioproject/download.lock
## Update config/bioproject-pubmed/config.yaml => output/tsv/bioproject-pubmed.tsv
-< 2024-10-18T20:16:36 bioproject-pubmed
+< 2024-10-25T20:15:06 bioproject-pubmed
togoid-config config/bioproject-pubmed update
# Success: output/tsv/bioproject-pubmed.tsv is updated
-> 2024-10-18T20:16:38 bioproject-pubmed
+> 2024-10-25T20:15:07 bioproject-pubmed
Rule for TSV (output/tsv/bioproject-pubmed.tsv)
------------------------------
Investigating output/tsv/bioproject-pubmed.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:16:38 +0900
+timestamp: 2024-10-25 20:15:07 +0900
pre-requisites:
--output/tsv/ ()
---prepare:bioproject (2024-10-18 20:16:38 +0900)
-latest-prerequisite time: 2024-10-18 20:16:38 +0900
+--prepare:bioproject (2024-10-25 20:15:07 +0900)
+latest-prerequisite time: 2024-10-25 20:15:07 +0900
................................
### Update TSV for bioproject_umbrella-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/bioproject_umbrella-bioproject.tsv is newer than config/bioproject_umbrella-bioproject/config.yaml
# File output/tsv/bioproject_umbrella-bioproject.tsv has no timestamp file
-# File output/tsv/bioproject_umbrella-bioproject.tsv is created 7.003729378794769 days ago (will be updated when >5 days)
+# File output/tsv/bioproject_umbrella-bioproject.tsv is created 6.998945353574954 days ago (will be updated when >5 days)
## Update config/bioproject_umbrella-bioproject/config.yaml => output/tsv/bioproject_umbrella-bioproject.tsv
-< 2024-10-18T20:16:38 bioproject_umbrella-bioproject
+< 2024-10-25T20:15:07 bioproject_umbrella-bioproject
togoid-config config/bioproject_umbrella-bioproject update
# Success: output/tsv/bioproject_umbrella-bioproject.tsv is updated
-> 2024-10-18T20:16:38 bioproject_umbrella-bioproject
+> 2024-10-25T20:15:08 bioproject_umbrella-bioproject
Rule for TSV (output/tsv/bioproject_umbrella-bioproject.tsv)
------------------------------
Investigating output/tsv/bioproject_umbrella-bioproject.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:16:38 +0900
+timestamp: 2024-10-25 20:15:08 +0900
pre-requisites:
--output/tsv/ ()
---prepare:bioproject (2024-10-18 20:16:38 +0900)
-latest-prerequisite time: 2024-10-18 20:16:38 +0900
+--prepare:bioproject (2024-10-25 20:15:08 +0900)
+latest-prerequisite time: 2024-10-25 20:15:08 +0900
................................
### Update TSV for biosample-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/biosample-bioproject.tsv is newer than config/biosample-bioproject/config.yaml
# File output/tsv/biosample-bioproject.tsv is older than input/biosample/download.lock
## Update config/biosample-bioproject/config.yaml => output/tsv/biosample-bioproject.tsv
-< 2024-10-18T20:16:38 biosample-bioproject
+< 2024-10-25T20:15:08 biosample-bioproject
togoid-config config/biosample-bioproject update
# Success: output/tsv/biosample-bioproject.tsv is updated
-> 2024-10-18T20:18:45 biosample-bioproject
+> 2024-10-25T20:17:03 biosample-bioproject
Rule for TSV (output/tsv/biosample-bioproject.tsv)
------------------------------
Investigating output/tsv/biosample-bioproject.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:18:45 +0900
+timestamp: 2024-10-25 20:17:03 +0900
pre-requisites:
--output/tsv/ ()
---prepare:biosample (2024-10-18 20:18:45 +0900)
-latest-prerequisite time: 2024-10-18 20:18:45 +0900
+--prepare:biosample (2024-10-25 20:17:03 +0900)
+latest-prerequisite time: 2024-10-25 20:17:03 +0900
................................
### Update TSV for biosample-geo_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/biosample-geo_sample.tsv is newer than config/biosample-geo_sample/config.yaml
# File output/tsv/biosample-geo_sample.tsv is older than input/biosample/download.lock
## Update config/biosample-geo_sample/config.yaml => output/tsv/biosample-geo_sample.tsv
-< 2024-10-18T20:18:45 biosample-geo_sample
+< 2024-10-25T20:17:03 biosample-geo_sample
togoid-config config/biosample-geo_sample update
# Success: output/tsv/biosample-geo_sample.tsv is updated
-> 2024-10-18T20:20:17 biosample-geo_sample
+> 2024-10-25T20:18:37 biosample-geo_sample
Rule for TSV (output/tsv/biosample-geo_sample.tsv)
------------------------------
Investigating output/tsv/biosample-geo_sample.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:20:17 +0900
+timestamp: 2024-10-25 20:18:37 +0900
pre-requisites:
--output/tsv/ ()
---prepare:biosample (2024-10-18 20:20:17 +0900)
-latest-prerequisite time: 2024-10-18 20:20:17 +0900
+--prepare:biosample (2024-10-25 20:18:37 +0900)
+latest-prerequisite time: 2024-10-25 20:18:37 +0900
................................
### Update TSV for cellosaurus-ncit_disease if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -507,8 +508,8 @@ task needed: true
timestamp: 2024-09-13 20:46:20 +0900
pre-requisites:
--output/tsv/ ()
---prepare:cellosaurus (2024-10-18 20:20:17 +0900)
-latest-prerequisite time: 2024-10-18 20:20:17 +0900
+--prepare:cellosaurus (2024-10-25 20:18:37 +0900)
+latest-prerequisite time: 2024-10-25 20:18:37 +0900
................................
### Update TSV for cellosaurus-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -523,271 +524,271 @@ task needed: true
timestamp: 2024-09-13 20:46:24 +0900
pre-requisites:
--output/tsv/ ()
---prepare:cellosaurus (2024-10-18 20:20:17 +0900)
-latest-prerequisite time: 2024-10-18 20:20:17 +0900
+--prepare:cellosaurus (2024-10-25 20:18:37 +0900)
+latest-prerequisite time: 2024-10-25 20:18:37 +0900
................................
### Update TSV for chebi-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chebi-glytoucan.tsv is newer than config/chebi-glytoucan/config.yaml
# File output/tsv/chebi-glytoucan.tsv has no timestamp file
-# File output/tsv/chebi-glytoucan.tsv is created 7.00383882965706 days ago (will be updated when >5 days)
+# File output/tsv/chebi-glytoucan.tsv is created 6.998841889772199 days ago (will be updated when >5 days)
## Update config/chebi-glytoucan/config.yaml => output/tsv/chebi-glytoucan.tsv
-< 2024-10-18T20:20:17 chebi-glytoucan
+< 2024-10-25T20:18:37 chebi-glytoucan
togoid-config config/chebi-glytoucan update
# Success: output/tsv/chebi-glytoucan.tsv is updated
-> 2024-10-18T20:20:17 chebi-glytoucan
+> 2024-10-25T20:18:38 chebi-glytoucan
Rule for TSV (output/tsv/chebi-glytoucan.tsv)
------------------------------
Investigating output/tsv/chebi-glytoucan.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:20:17 +0900
+timestamp: 2024-10-25 20:18:38 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chebi-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chebi-inchi_key.tsv is newer than config/chebi-inchi_key/config.yaml
# File output/tsv/chebi-inchi_key.tsv has no timestamp file
-# File output/tsv/chebi-inchi_key.tsv is created 7.003835932904514 days ago (will be updated when >5 days)
+# File output/tsv/chebi-inchi_key.tsv is created 6.9988392916575455 days ago (will be updated when >5 days)
## Update config/chebi-inchi_key/config.yaml => output/tsv/chebi-inchi_key.tsv
-< 2024-10-18T20:20:17 chebi-inchi_key
+< 2024-10-25T20:18:38 chebi-inchi_key
togoid-config config/chebi-inchi_key update
# Success: output/tsv/chebi-inchi_key.tsv is updated
-> 2024-10-18T20:20:18 chebi-inchi_key
+> 2024-10-25T20:18:39 chebi-inchi_key
Rule for TSV (output/tsv/chebi-inchi_key.tsv)
------------------------------
Investigating output/tsv/chebi-inchi_key.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:20:18 +0900
+timestamp: 2024-10-25 20:18:39 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_compound-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_compound-chebi.tsv is newer than config/chembl_compound-chebi/config.yaml
# File output/tsv/chembl_compound-chebi.tsv has no timestamp file
-# File output/tsv/chembl_compound-chebi.tsv is created 7.003839127250614 days ago (will be updated when >5 days)
+# File output/tsv/chembl_compound-chebi.tsv is created 6.998841671659583 days ago (will be updated when >5 days)
## Update config/chembl_compound-chebi/config.yaml => output/tsv/chembl_compound-chebi.tsv
-< 2024-10-18T20:20:18 chembl_compound-chebi
+< 2024-10-25T20:18:39 chembl_compound-chebi
togoid-config config/chembl_compound-chebi update
# Success: output/tsv/chembl_compound-chebi.tsv is updated
-> 2024-10-18T20:20:19 chembl_compound-chebi
+> 2024-10-25T20:18:39 chembl_compound-chebi
Rule for TSV (output/tsv/chembl_compound-chebi.tsv)
------------------------------
Investigating output/tsv/chembl_compound-chebi.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:20:19 +0900
+timestamp: 2024-10-25 20:18:39 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_compound-chembl_target if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_compound-chembl_target.tsv is newer than config/chembl_compound-chembl_target/config.yaml
# File output/tsv/chembl_compound-chembl_target.tsv has no timestamp file
-# File output/tsv/chembl_compound-chembl_target.tsv is created 6.992807600626249 days ago (will be updated when >5 days)
+# File output/tsv/chembl_compound-chembl_target.tsv is created 6.987815663964109 days ago (will be updated when >5 days)
## Update config/chembl_compound-chembl_target/config.yaml => output/tsv/chembl_compound-chembl_target.tsv
-< 2024-10-18T20:20:19 chembl_compound-chembl_target
+< 2024-10-25T20:18:39 chembl_compound-chembl_target
togoid-config config/chembl_compound-chembl_target update
# Success: output/tsv/chembl_compound-chembl_target.tsv is updated
-> 2024-10-18T20:36:12 chembl_compound-chembl_target
+> 2024-10-25T20:34:30 chembl_compound-chembl_target
Rule for TSV (output/tsv/chembl_compound-chembl_target.tsv)
------------------------------
Investigating output/tsv/chembl_compound-chembl_target.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:12 +0900
+timestamp: 2024-10-25 20:34:30 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_compound-drugbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_compound-drugbank.tsv is newer than config/chembl_compound-drugbank/config.yaml
# File output/tsv/chembl_compound-drugbank.tsv has no timestamp file
-# File output/tsv/chembl_compound-drugbank.tsv is created 7.00383342266367 days ago (will be updated when >5 days)
+# File output/tsv/chembl_compound-drugbank.tsv is created 6.998822813437465 days ago (will be updated when >5 days)
## Update config/chembl_compound-drugbank/config.yaml => output/tsv/chembl_compound-drugbank.tsv
-< 2024-10-18T20:36:12 chembl_compound-drugbank
+< 2024-10-25T20:34:30 chembl_compound-drugbank
togoid-config config/chembl_compound-drugbank update
# Success: output/tsv/chembl_compound-drugbank.tsv is updated
-> 2024-10-18T20:36:12 chembl_compound-drugbank
+> 2024-10-25T20:34:31 chembl_compound-drugbank
Rule for TSV (output/tsv/chembl_compound-drugbank.tsv)
------------------------------
Investigating output/tsv/chembl_compound-drugbank.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:12 +0900
+timestamp: 2024-10-25 20:34:31 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_compound-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_compound-hmdb.tsv is newer than config/chembl_compound-hmdb/config.yaml
# File output/tsv/chembl_compound-hmdb.tsv has no timestamp file
-# File output/tsv/chembl_compound-hmdb.tsv is created 7.003833143307766 days ago (will be updated when >5 days)
+# File output/tsv/chembl_compound-hmdb.tsv is created 6.998822671434838 days ago (will be updated when >5 days)
## Update config/chembl_compound-hmdb/config.yaml => output/tsv/chembl_compound-hmdb.tsv
-< 2024-10-18T20:36:12 chembl_compound-hmdb
+< 2024-10-25T20:34:31 chembl_compound-hmdb
togoid-config config/chembl_compound-hmdb update
# Success: output/tsv/chembl_compound-hmdb.tsv is updated
-> 2024-10-18T20:36:13 chembl_compound-hmdb
+> 2024-10-25T20:34:31 chembl_compound-hmdb
Rule for TSV (output/tsv/chembl_compound-hmdb.tsv)
------------------------------
Investigating output/tsv/chembl_compound-hmdb.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:13 +0900
+timestamp: 2024-10-25 20:34:31 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_compound-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_compound-inchi_key.tsv is newer than config/chembl_compound-inchi_key/config.yaml
# File output/tsv/chembl_compound-inchi_key.tsv has no timestamp file
-# File output/tsv/chembl_compound-inchi_key.tsv is created 7.003786706536956 days ago (will be updated when >5 days)
+# File output/tsv/chembl_compound-inchi_key.tsv is created 6.998776121490903 days ago (will be updated when >5 days)
## Update config/chembl_compound-inchi_key/config.yaml => output/tsv/chembl_compound-inchi_key.tsv
-< 2024-10-18T20:36:13 chembl_compound-inchi_key
+< 2024-10-25T20:34:31 chembl_compound-inchi_key
togoid-config config/chembl_compound-inchi_key update
# Success: output/tsv/chembl_compound-inchi_key.tsv is updated
-> 2024-10-18T20:36:17 chembl_compound-inchi_key
+> 2024-10-25T20:34:35 chembl_compound-inchi_key
Rule for TSV (output/tsv/chembl_compound-inchi_key.tsv)
------------------------------
Investigating output/tsv/chembl_compound-inchi_key.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:17 +0900
+timestamp: 2024-10-25 20:34:35 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_compound-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_compound-mesh.tsv is newer than config/chembl_compound-mesh/config.yaml
# File output/tsv/chembl_compound-mesh.tsv has no timestamp file
-# File output/tsv/chembl_compound-mesh.tsv is created 7.003831864312164 days ago (will be updated when >5 days)
+# File output/tsv/chembl_compound-mesh.tsv is created 6.998818682671516 days ago (will be updated when >5 days)
## Update config/chembl_compound-mesh/config.yaml => output/tsv/chembl_compound-mesh.tsv
-< 2024-10-18T20:36:17 chembl_compound-mesh
+< 2024-10-25T20:34:35 chembl_compound-mesh
togoid-config config/chembl_compound-mesh update
# Success: output/tsv/chembl_compound-mesh.tsv is updated
-> 2024-10-18T20:36:17 chembl_compound-mesh
+> 2024-10-25T20:34:36 chembl_compound-mesh
Rule for TSV (output/tsv/chembl_compound-mesh.tsv)
------------------------------
Investigating output/tsv/chembl_compound-mesh.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:17 +0900
+timestamp: 2024-10-25 20:34:36 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_compound-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_compound-pdb_ccd.tsv is newer than config/chembl_compound-pdb_ccd/config.yaml
# File output/tsv/chembl_compound-pdb_ccd.tsv has no timestamp file
-# File output/tsv/chembl_compound-pdb_ccd.tsv is created 7.0038328949195945 days ago (will be updated when >5 days)
+# File output/tsv/chembl_compound-pdb_ccd.tsv is created 6.998819497088577 days ago (will be updated when >5 days)
## Update config/chembl_compound-pdb_ccd/config.yaml => output/tsv/chembl_compound-pdb_ccd.tsv
-< 2024-10-18T20:36:17 chembl_compound-pdb_ccd
+< 2024-10-25T20:34:36 chembl_compound-pdb_ccd
togoid-config config/chembl_compound-pdb_ccd update
# Success: output/tsv/chembl_compound-pdb_ccd.tsv is updated
-> 2024-10-18T20:36:18 chembl_compound-pdb_ccd
+> 2024-10-25T20:34:36 chembl_compound-pdb_ccd
Rule for TSV (output/tsv/chembl_compound-pdb_ccd.tsv)
------------------------------
Investigating output/tsv/chembl_compound-pdb_ccd.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:18 +0900
+timestamp: 2024-10-25 20:34:36 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_compound-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_compound-pubchem_compound.tsv is newer than config/chembl_compound-pubchem_compound/config.yaml
# File output/tsv/chembl_compound-pubchem_compound.tsv has no timestamp file
-# File output/tsv/chembl_compound-pubchem_compound.tsv is created 7.003788058907466 days ago (will be updated when >5 days)
+# File output/tsv/chembl_compound-pubchem_compound.tsv is created 6.99877657756478 days ago (will be updated when >5 days)
## Update config/chembl_compound-pubchem_compound/config.yaml => output/tsv/chembl_compound-pubchem_compound.tsv
-< 2024-10-18T20:36:18 chembl_compound-pubchem_compound
+< 2024-10-25T20:34:36 chembl_compound-pubchem_compound
togoid-config config/chembl_compound-pubchem_compound update
# Success: output/tsv/chembl_compound-pubchem_compound.tsv is updated
-> 2024-10-18T20:36:22 chembl_compound-pubchem_compound
+> 2024-10-25T20:34:40 chembl_compound-pubchem_compound
Rule for TSV (output/tsv/chembl_compound-pubchem_compound.tsv)
------------------------------
Investigating output/tsv/chembl_compound-pubchem_compound.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:22 +0900
+timestamp: 2024-10-25 20:34:40 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_compound-pubchem_substance if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_compound-pubchem_substance.tsv is newer than config/chembl_compound-pubchem_substance/config.yaml
# File output/tsv/chembl_compound-pubchem_substance.tsv has no timestamp file
-# File output/tsv/chembl_compound-pubchem_substance.tsv is created 7.003822428882824 days ago (will be updated when >5 days)
+# File output/tsv/chembl_compound-pubchem_substance.tsv is created 6.998807371514711 days ago (will be updated when >5 days)
## Update config/chembl_compound-pubchem_substance/config.yaml => output/tsv/chembl_compound-pubchem_substance.tsv
-< 2024-10-18T20:36:22 chembl_compound-pubchem_substance
+< 2024-10-25T20:34:40 chembl_compound-pubchem_substance
togoid-config config/chembl_compound-pubchem_substance update
# Success: output/tsv/chembl_compound-pubchem_substance.tsv is updated
-> 2024-10-18T20:36:23 chembl_compound-pubchem_substance
+> 2024-10-25T20:34:41 chembl_compound-pubchem_substance
Rule for TSV (output/tsv/chembl_compound-pubchem_substance.tsv)
------------------------------
Investigating output/tsv/chembl_compound-pubchem_substance.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:23 +0900
+timestamp: 2024-10-25 20:34:41 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_compound-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_compound-pubmed.tsv is newer than config/chembl_compound-pubmed/config.yaml
# File output/tsv/chembl_compound-pubmed.tsv has no timestamp file
-# File output/tsv/chembl_compound-pubmed.tsv is created 7.003803367241377 days ago (will be updated when >5 days)
+# File output/tsv/chembl_compound-pubmed.tsv is created 6.998787952110486 days ago (will be updated when >5 days)
## Update config/chembl_compound-pubmed/config.yaml => output/tsv/chembl_compound-pubmed.tsv
-< 2024-10-18T20:36:23 chembl_compound-pubmed
+< 2024-10-25T20:34:41 chembl_compound-pubmed
togoid-config config/chembl_compound-pubmed update
# Success: output/tsv/chembl_compound-pubmed.tsv is updated
-> 2024-10-18T20:36:26 chembl_compound-pubmed
+> 2024-10-25T20:34:44 chembl_compound-pubmed
Rule for TSV (output/tsv/chembl_compound-pubmed.tsv)
------------------------------
Investigating output/tsv/chembl_compound-pubmed.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:26 +0900
+timestamp: 2024-10-25 20:34:44 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_target-ensembl_gene if check_tsv_filesize false or check_config_timestamp true or check_tsv_timestamp true
# File output/tsv/chembl_target-ensembl_gene.tsv is older than config/chembl_target-ensembl_gene/config.yaml
## Update config/chembl_target-ensembl_gene/config.yaml => output/tsv/chembl_target-ensembl_gene.tsv
-< 2024-10-18T20:36:26 chembl_target-ensembl_gene
+< 2024-10-25T20:34:44 chembl_target-ensembl_gene
togoid-config config/chembl_target-ensembl_gene update
# Error: output/tsv/chembl_target-ensembl_gene.tsv new file size per old 0 / 61845 = 0.0 < 0.5
# Error: Failed to create output/tsv/chembl_target-ensembl_gene.tsv or created file was empty
# Failure: output/tsv/chembl_target-ensembl_gene.tsv is not updated
-> 2024-10-18T20:36:26 chembl_target-ensembl_gene
+> 2024-10-25T20:34:45 chembl_target-ensembl_gene
Rule for TSV (output/tsv/chembl_target-ensembl_gene.tsv)
------------------------------
Investigating output/tsv/chembl_target-ensembl_gene.tsv
@@ -796,294 +797,294 @@ task needed: true
timestamp: 2023-08-25 17:59:01 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_target-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_target-go.tsv is newer than config/chembl_target-go/config.yaml
# File output/tsv/chembl_target-go.tsv has no timestamp file
-# File output/tsv/chembl_target-go.tsv is created 7.003829697519201 days ago (will be updated when >5 days)
+# File output/tsv/chembl_target-go.tsv is created 6.998816815981111 days ago (will be updated when >5 days)
## Update config/chembl_target-go/config.yaml => output/tsv/chembl_target-go.tsv
-< 2024-10-18T20:36:26 chembl_target-go
+< 2024-10-25T20:34:45 chembl_target-go
togoid-config config/chembl_target-go update
# Success: output/tsv/chembl_target-go.tsv is updated
-> 2024-10-18T20:36:27 chembl_target-go
+> 2024-10-25T20:34:45 chembl_target-go
Rule for TSV (output/tsv/chembl_target-go.tsv)
------------------------------
Investigating output/tsv/chembl_target-go.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:27 +0900
+timestamp: 2024-10-25 20:34:45 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_target-interpro if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_target-interpro.tsv is newer than config/chembl_target-interpro/config.yaml
# File output/tsv/chembl_target-interpro.tsv has no timestamp file
-# File output/tsv/chembl_target-interpro.tsv is created 7.00382933762183 days ago (will be updated when >5 days)
+# File output/tsv/chembl_target-interpro.tsv is created 6.9988167744205905 days ago (will be updated when >5 days)
## Update config/chembl_target-interpro/config.yaml => output/tsv/chembl_target-interpro.tsv
-< 2024-10-18T20:36:27 chembl_target-interpro
+< 2024-10-25T20:34:45 chembl_target-interpro
togoid-config config/chembl_target-interpro update
# Success: output/tsv/chembl_target-interpro.tsv is updated
-> 2024-10-18T20:36:27 chembl_target-interpro
+> 2024-10-25T20:34:45 chembl_target-interpro
Rule for TSV (output/tsv/chembl_target-interpro.tsv)
------------------------------
Investigating output/tsv/chembl_target-interpro.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:27 +0900
+timestamp: 2024-10-25 20:34:45 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_target-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_target-pdb.tsv is newer than config/chembl_target-pdb/config.yaml
# File output/tsv/chembl_target-pdb.tsv has no timestamp file
-# File output/tsv/chembl_target-pdb.tsv is created 7.003828584838171 days ago (will be updated when >5 days)
+# File output/tsv/chembl_target-pdb.tsv is created 6.998816451612974 days ago (will be updated when >5 days)
## Update config/chembl_target-pdb/config.yaml => output/tsv/chembl_target-pdb.tsv
-< 2024-10-18T20:36:27 chembl_target-pdb
+< 2024-10-25T20:34:45 chembl_target-pdb
togoid-config config/chembl_target-pdb update
# Success: output/tsv/chembl_target-pdb.tsv is updated
-> 2024-10-18T20:36:28 chembl_target-pdb
+> 2024-10-25T20:34:46 chembl_target-pdb
Rule for TSV (output/tsv/chembl_target-pdb.tsv)
------------------------------
Investigating output/tsv/chembl_target-pdb.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:28 +0900
+timestamp: 2024-10-25 20:34:46 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_target-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_target-pfam.tsv is newer than config/chembl_target-pfam/config.yaml
# File output/tsv/chembl_target-pfam.tsv has no timestamp file
-# File output/tsv/chembl_target-pfam.tsv is created 7.003823446038091 days ago (will be updated when >5 days)
+# File output/tsv/chembl_target-pfam.tsv is created 6.998817065349873 days ago (will be updated when >5 days)
## Update config/chembl_target-pfam/config.yaml => output/tsv/chembl_target-pfam.tsv
-< 2024-10-18T20:36:28 chembl_target-pfam
+< 2024-10-25T20:34:46 chembl_target-pfam
togoid-config config/chembl_target-pfam update
# Success: output/tsv/chembl_target-pfam.tsv is updated
-> 2024-10-18T20:36:28 chembl_target-pfam
+> 2024-10-25T20:34:46 chembl_target-pfam
Rule for TSV (output/tsv/chembl_target-pfam.tsv)
------------------------------
Investigating output/tsv/chembl_target-pfam.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:28 +0900
+timestamp: 2024-10-25 20:34:46 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_target-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_target-reactome_pathway.tsv is newer than config/chembl_target-reactome_pathway/config.yaml
# File output/tsv/chembl_target-reactome_pathway.tsv has no timestamp file
-# File output/tsv/chembl_target-reactome_pathway.tsv is created 7.0038234136396875 days ago (will be updated when >5 days)
+# File output/tsv/chembl_target-reactome_pathway.tsv is created 6.998817406262431 days ago (will be updated when >5 days)
## Update config/chembl_target-reactome_pathway/config.yaml => output/tsv/chembl_target-reactome_pathway.tsv
-< 2024-10-18T20:36:28 chembl_target-reactome_pathway
+< 2024-10-25T20:34:46 chembl_target-reactome_pathway
togoid-config config/chembl_target-reactome_pathway update
# Success: output/tsv/chembl_target-reactome_pathway.tsv is updated
-> 2024-10-18T20:36:28 chembl_target-reactome_pathway
+> 2024-10-25T20:34:47 chembl_target-reactome_pathway
Rule for TSV (output/tsv/chembl_target-reactome_pathway.tsv)
------------------------------
Investigating output/tsv/chembl_target-reactome_pathway.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:28 +0900
+timestamp: 2024-10-25 20:34:47 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for chembl_target-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/chembl_target-uniprot.tsv is newer than config/chembl_target-uniprot/config.yaml
# File output/tsv/chembl_target-uniprot.tsv has no timestamp file
-# File output/tsv/chembl_target-uniprot.tsv is created 7.003822923705984 days ago (will be updated when >5 days)
+# File output/tsv/chembl_target-uniprot.tsv is created 6.998817599566643 days ago (will be updated when >5 days)
## Update config/chembl_target-uniprot/config.yaml => output/tsv/chembl_target-uniprot.tsv
-< 2024-10-18T20:36:28 chembl_target-uniprot
+< 2024-10-25T20:34:47 chembl_target-uniprot
togoid-config config/chembl_target-uniprot update
# Success: output/tsv/chembl_target-uniprot.tsv is updated
-> 2024-10-18T20:36:29 chembl_target-uniprot
+> 2024-10-25T20:34:47 chembl_target-uniprot
Rule for TSV (output/tsv/chembl_target-uniprot.tsv)
------------------------------
Investigating output/tsv/chembl_target-uniprot.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:36:29 +0900
+timestamp: 2024-10-25 20:34:47 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for clinvar-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/clinvar-dbsnp.tsv is newer than config/clinvar-dbsnp/config.yaml
# File output/tsv/clinvar-dbsnp.tsv is older than input/clinvar/download.lock
## Update config/clinvar-dbsnp/config.yaml => output/tsv/clinvar-dbsnp.tsv
-< 2024-10-18T20:36:29 clinvar-dbsnp
+< 2024-10-25T20:34:47 clinvar-dbsnp
togoid-config config/clinvar-dbsnp update
# Success: output/tsv/clinvar-dbsnp.tsv is updated
-> 2024-10-18T20:37:08 clinvar-dbsnp
+> 2024-10-25T20:35:31 clinvar-dbsnp
Rule for TSV (output/tsv/clinvar-dbsnp.tsv)
------------------------------
Investigating output/tsv/clinvar-dbsnp.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:37:08 +0900
+timestamp: 2024-10-25 20:35:31 +0900
pre-requisites:
--output/tsv/ ()
---prepare:clinvar (2024-10-18 20:37:08 +0900)
-latest-prerequisite time: 2024-10-18 20:37:08 +0900
+--prepare:clinvar (2024-10-25 20:35:31 +0900)
+latest-prerequisite time: 2024-10-25 20:35:31 +0900
................................
### Update TSV for clinvar-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/clinvar-hgnc.tsv is newer than config/clinvar-hgnc/config.yaml
# File output/tsv/clinvar-hgnc.tsv is older than input/clinvar/download.lock
## Update config/clinvar-hgnc/config.yaml => output/tsv/clinvar-hgnc.tsv
-< 2024-10-18T20:37:08 clinvar-hgnc
+< 2024-10-25T20:35:31 clinvar-hgnc
togoid-config config/clinvar-hgnc update
# Success: output/tsv/clinvar-hgnc.tsv is updated
-> 2024-10-18T20:38:02 clinvar-hgnc
+> 2024-10-25T20:36:24 clinvar-hgnc
Rule for TSV (output/tsv/clinvar-hgnc.tsv)
------------------------------
Investigating output/tsv/clinvar-hgnc.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:38:02 +0900
+timestamp: 2024-10-25 20:36:24 +0900
pre-requisites:
--output/tsv/ ()
---prepare:clinvar (2024-10-18 20:38:02 +0900)
-latest-prerequisite time: 2024-10-18 20:38:02 +0900
+--prepare:clinvar (2024-10-25 20:36:24 +0900)
+latest-prerequisite time: 2024-10-25 20:36:24 +0900
................................
### Update TSV for clinvar-medgen if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/clinvar-medgen.tsv is newer than config/clinvar-medgen/config.yaml
# File output/tsv/clinvar-medgen.tsv is older than input/clinvar/download.lock
## Update config/clinvar-medgen/config.yaml => output/tsv/clinvar-medgen.tsv
-< 2024-10-18T20:38:02 clinvar-medgen
+< 2024-10-25T20:36:24 clinvar-medgen
togoid-config config/clinvar-medgen update
# Success: output/tsv/clinvar-medgen.tsv is updated
-> 2024-10-18T20:39:36 clinvar-medgen
+> 2024-10-25T20:37:59 clinvar-medgen
Rule for TSV (output/tsv/clinvar-medgen.tsv)
------------------------------
Investigating output/tsv/clinvar-medgen.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:39:36 +0900
+timestamp: 2024-10-25 20:37:59 +0900
pre-requisites:
--output/tsv/ ()
---prepare:clinvar (2024-10-18 20:39:36 +0900)
-latest-prerequisite time: 2024-10-18 20:39:36 +0900
+--prepare:clinvar (2024-10-25 20:37:59 +0900)
+latest-prerequisite time: 2024-10-25 20:37:59 +0900
................................
### Update TSV for clinvar-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/clinvar-mondo.tsv is newer than config/clinvar-mondo/config.yaml
# File output/tsv/clinvar-mondo.tsv is older than input/clinvar/download.lock
## Update config/clinvar-mondo/config.yaml => output/tsv/clinvar-mondo.tsv
-< 2024-10-18T20:39:36 clinvar-mondo
+< 2024-10-25T20:37:59 clinvar-mondo
togoid-config config/clinvar-mondo update
# Success: output/tsv/clinvar-mondo.tsv is updated
-> 2024-10-18T20:41:06 clinvar-mondo
+> 2024-10-25T20:39:30 clinvar-mondo
Rule for TSV (output/tsv/clinvar-mondo.tsv)
------------------------------
Investigating output/tsv/clinvar-mondo.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:41:06 +0900
+timestamp: 2024-10-25 20:39:30 +0900
pre-requisites:
--output/tsv/ ()
---prepare:clinvar (2024-10-18 20:41:06 +0900)
-latest-prerequisite time: 2024-10-18 20:41:06 +0900
+--prepare:clinvar (2024-10-25 20:39:30 +0900)
+latest-prerequisite time: 2024-10-25 20:39:30 +0900
................................
### Update TSV for clinvar-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/clinvar-ncbigene.tsv is newer than config/clinvar-ncbigene/config.yaml
# File output/tsv/clinvar-ncbigene.tsv is older than input/clinvar/download.lock
## Update config/clinvar-ncbigene/config.yaml => output/tsv/clinvar-ncbigene.tsv
-< 2024-10-18T20:41:06 clinvar-ncbigene
+< 2024-10-25T20:39:30 clinvar-ncbigene
togoid-config config/clinvar-ncbigene update
# Success: output/tsv/clinvar-ncbigene.tsv is updated
-> 2024-10-18T20:41:57 clinvar-ncbigene
+> 2024-10-25T20:40:22 clinvar-ncbigene
Rule for TSV (output/tsv/clinvar-ncbigene.tsv)
------------------------------
Investigating output/tsv/clinvar-ncbigene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:41:57 +0900
+timestamp: 2024-10-25 20:40:22 +0900
pre-requisites:
--output/tsv/ ()
---prepare:clinvar (2024-10-18 20:41:57 +0900)
-latest-prerequisite time: 2024-10-18 20:41:57 +0900
+--prepare:clinvar (2024-10-25 20:40:22 +0900)
+latest-prerequisite time: 2024-10-25 20:40:22 +0900
................................
### Update TSV for clinvar-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/clinvar-omim_phenotype.tsv is newer than config/clinvar-omim_phenotype/config.yaml
# File output/tsv/clinvar-omim_phenotype.tsv is older than input/clinvar/download.lock
## Update config/clinvar-omim_phenotype/config.yaml => output/tsv/clinvar-omim_phenotype.tsv
-< 2024-10-18T20:41:57 clinvar-omim_phenotype
+< 2024-10-25T20:40:22 clinvar-omim_phenotype
togoid-config config/clinvar-omim_phenotype update
# Success: output/tsv/clinvar-omim_phenotype.tsv is updated
-> 2024-10-18T20:43:27 clinvar-omim_phenotype
+> 2024-10-25T20:41:50 clinvar-omim_phenotype
Rule for TSV (output/tsv/clinvar-omim_phenotype.tsv)
------------------------------
Investigating output/tsv/clinvar-omim_phenotype.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:43:27 +0900
+timestamp: 2024-10-25 20:41:50 +0900
pre-requisites:
--output/tsv/ ()
---prepare:clinvar (2024-10-18 20:43:27 +0900)
-latest-prerequisite time: 2024-10-18 20:43:27 +0900
+--prepare:clinvar (2024-10-25 20:41:50 +0900)
+latest-prerequisite time: 2024-10-25 20:41:50 +0900
................................
### Update TSV for clinvar-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/clinvar-orphanet_phenotype.tsv is newer than config/clinvar-orphanet_phenotype/config.yaml
# File output/tsv/clinvar-orphanet_phenotype.tsv is older than input/clinvar/download.lock
## Update config/clinvar-orphanet_phenotype/config.yaml => output/tsv/clinvar-orphanet_phenotype.tsv
-< 2024-10-18T20:43:27 clinvar-orphanet_phenotype
+< 2024-10-25T20:41:50 clinvar-orphanet_phenotype
togoid-config config/clinvar-orphanet_phenotype update
# Success: output/tsv/clinvar-orphanet_phenotype.tsv is updated
-> 2024-10-18T20:44:56 clinvar-orphanet_phenotype
+> 2024-10-25T20:43:20 clinvar-orphanet_phenotype
Rule for TSV (output/tsv/clinvar-orphanet_phenotype.tsv)
------------------------------
Investigating output/tsv/clinvar-orphanet_phenotype.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:44:56 +0900
+timestamp: 2024-10-25 20:43:20 +0900
pre-requisites:
--output/tsv/ ()
---prepare:clinvar (2024-10-18 20:44:56 +0900)
-latest-prerequisite time: 2024-10-18 20:44:56 +0900
+--prepare:clinvar (2024-10-25 20:43:20 +0900)
+latest-prerequisite time: 2024-10-25 20:43:20 +0900
................................
### Update TSV for clinvar-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/clinvar-uniprot.tsv is newer than config/clinvar-uniprot/config.yaml
# File output/tsv/clinvar-uniprot.tsv is older than input/clinvar/download.lock
## Update config/clinvar-uniprot/config.yaml => output/tsv/clinvar-uniprot.tsv
-< 2024-10-18T20:44:56 clinvar-uniprot
+< 2024-10-25T20:43:20 clinvar-uniprot
togoid-config config/clinvar-uniprot update
# Success: output/tsv/clinvar-uniprot.tsv is updated
-> 2024-10-18T20:45:46 clinvar-uniprot
+> 2024-10-25T20:44:10 clinvar-uniprot
Rule for TSV (output/tsv/clinvar-uniprot.tsv)
------------------------------
Investigating output/tsv/clinvar-uniprot.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:45:46 +0900
+timestamp: 2024-10-25 20:44:10 +0900
pre-requisites:
--output/tsv/ ()
---prepare:clinvar (2024-10-18 20:45:46 +0900)
-latest-prerequisite time: 2024-10-18 20:45:46 +0900
+--prepare:clinvar (2024-10-25 20:44:10 +0900)
+latest-prerequisite time: 2024-10-25 20:44:10 +0900
................................
### Update TSV for cog-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -1098,8 +1099,8 @@ task needed: true
timestamp: 2023-07-28 17:55:29 +0900
pre-requisites:
--output/tsv/ ()
---prepare:cog (2024-10-18 20:45:46 +0900)
-latest-prerequisite time: 2024-10-18 20:45:46 +0900
+--prepare:cog (2024-10-25 20:44:10 +0900)
+latest-prerequisite time: 2024-10-25 20:44:10 +0900
................................
### Update TSV for cog-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -1114,163 +1115,163 @@ task needed: true
timestamp: 2023-07-28 17:55:40 +0900
pre-requisites:
--output/tsv/ ()
---prepare:cog (2024-10-18 20:45:46 +0900)
-latest-prerequisite time: 2024-10-18 20:45:46 +0900
+--prepare:cog (2024-10-25 20:44:10 +0900)
+latest-prerequisite time: 2024-10-25 20:44:10 +0900
................................
### Update TSV for doid-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/doid-mesh.tsv is newer than config/doid-mesh/config.yaml
# File output/tsv/doid-mesh.tsv has no timestamp file
-# File output/tsv/doid-mesh.tsv is created 7.0038232957658675 days ago (will be updated when >5 days)
+# File output/tsv/doid-mesh.tsv is created 6.998885190867164 days ago (will be updated when >5 days)
## Update config/doid-mesh/config.yaml => output/tsv/doid-mesh.tsv
-< 2024-10-18T20:45:46 doid-mesh
+< 2024-10-25T20:44:10 doid-mesh
togoid-config config/doid-mesh update
# Success: output/tsv/doid-mesh.tsv is updated
-> 2024-10-18T20:45:47 doid-mesh
+> 2024-10-25T20:44:11 doid-mesh
Rule for TSV (output/tsv/doid-mesh.tsv)
------------------------------
Investigating output/tsv/doid-mesh.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:45:47 +0900
+timestamp: 2024-10-25 20:44:11 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for doid-ncit_disease if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/doid-ncit_disease.tsv is newer than config/doid-ncit_disease/config.yaml
# File output/tsv/doid-ncit_disease.tsv has no timestamp file
-# File output/tsv/doid-ncit_disease.tsv is created 7.003823024343218 days ago (will be updated when >5 days)
+# File output/tsv/doid-ncit_disease.tsv is created 6.998884997124409 days ago (will be updated when >5 days)
## Update config/doid-ncit_disease/config.yaml => output/tsv/doid-ncit_disease.tsv
-< 2024-10-18T20:45:47 doid-ncit_disease
+< 2024-10-25T20:44:11 doid-ncit_disease
togoid-config config/doid-ncit_disease update
# Success: output/tsv/doid-ncit_disease.tsv is updated
-> 2024-10-18T20:45:47 doid-ncit_disease
+> 2024-10-25T20:44:11 doid-ncit_disease
Rule for TSV (output/tsv/doid-ncit_disease.tsv)
------------------------------
Investigating output/tsv/doid-ncit_disease.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:45:47 +0900
+timestamp: 2024-10-25 20:44:11 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for doid-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/doid-omim_phenotype.tsv is newer than config/doid-omim_phenotype/config.yaml
# File output/tsv/doid-omim_phenotype.tsv has no timestamp file
-# File output/tsv/doid-omim_phenotype.tsv is created 7.003822867496794 days ago (will be updated when >5 days)
+# File output/tsv/doid-omim_phenotype.tsv is created 6.99888854078125 days ago (will be updated when >5 days)
## Update config/doid-omim_phenotype/config.yaml => output/tsv/doid-omim_phenotype.tsv
-< 2024-10-18T20:45:47 doid-omim_phenotype
+< 2024-10-25T20:44:11 doid-omim_phenotype
togoid-config config/doid-omim_phenotype update
# Success: output/tsv/doid-omim_phenotype.tsv is updated
-> 2024-10-18T20:45:47 doid-omim_phenotype
+> 2024-10-25T20:44:12 doid-omim_phenotype
Rule for TSV (output/tsv/doid-omim_phenotype.tsv)
------------------------------
Investigating output/tsv/doid-omim_phenotype.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 20:45:47 +0900
+timestamp: 2024-10-25 20:44:12 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for ensembl_gene-affy_probeset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ensembl_gene-affy_probeset.tsv is newer than config/ensembl_gene-affy_probeset/config.yaml
# File output/tsv/ensembl_gene-affy_probeset.tsv has no timestamp file
-# File output/tsv/ensembl_gene-affy_probeset.tsv is created 7.0032308969164125 days ago (will be updated when >5 days)
+# File output/tsv/ensembl_gene-affy_probeset.tsv is created 6.993037067807026 days ago (will be updated when >5 days)
## Update config/ensembl_gene-affy_probeset/config.yaml => output/tsv/ensembl_gene-affy_probeset.tsv
-< 2024-10-18T20:45:47 ensembl_gene-affy_probeset
+< 2024-10-25T20:44:12 ensembl_gene-affy_probeset
togoid-config config/ensembl_gene-affy_probeset update
# Success: output/tsv/ensembl_gene-affy_probeset.tsv is updated
-> 2024-10-18T20:54:13 ensembl_gene-affy_probeset
+> 2024-10-25T20:45:09 ensembl_gene-affy_probeset
Rule for TSV (output/tsv/ensembl_gene-affy_probeset.tsv)
------------------------------
Investigating output/tsv/ensembl_gene-affy_probeset.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:54:13 +0900
+timestamp: 2024-10-25 20:45:09 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ensembl (2024-10-18 20:54:13 +0900)
-latest-prerequisite time: 2024-10-18 20:54:13 +0900
+--prepare:ensembl (2024-10-25 20:45:09 +0900)
+latest-prerequisite time: 2024-10-25 20:45:09 +0900
................................
### Update TSV for ensembl_gene-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ensembl_gene-ensembl_protein.tsv is newer than config/ensembl_gene-ensembl_protein/config.yaml
# File output/tsv/ensembl_gene-ensembl_protein.tsv has no timestamp file
-# File output/tsv/ensembl_gene-ensembl_protein.tsv is created 7.007840302459294 days ago (will be updated when >5 days)
+# File output/tsv/ensembl_gene-ensembl_protein.tsv is created 6.99240310967154 days ago (will be updated when >5 days)
## Update config/ensembl_gene-ensembl_protein/config.yaml => output/tsv/ensembl_gene-ensembl_protein.tsv
-< 2024-10-18T20:54:13 ensembl_gene-ensembl_protein
+< 2024-10-25T20:45:09 ensembl_gene-ensembl_protein
togoid-config config/ensembl_gene-ensembl_protein update
# Success: output/tsv/ensembl_gene-ensembl_protein.tsv is updated
-> 2024-10-18T20:56:06 ensembl_gene-ensembl_protein
+> 2024-10-25T20:46:56 ensembl_gene-ensembl_protein
Rule for TSV (output/tsv/ensembl_gene-ensembl_protein.tsv)
------------------------------
Investigating output/tsv/ensembl_gene-ensembl_protein.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:56:06 +0900
+timestamp: 2024-10-25 20:46:56 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ensembl (2024-10-18 20:56:06 +0900)
-latest-prerequisite time: 2024-10-18 20:56:06 +0900
+--prepare:ensembl (2024-10-25 20:46:56 +0900)
+latest-prerequisite time: 2024-10-25 20:46:56 +0900
................................
### Update TSV for ensembl_gene-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ensembl_gene-ensembl_transcript.tsv is newer than config/ensembl_gene-ensembl_transcript/config.yaml
# File output/tsv/ensembl_gene-ensembl_transcript.tsv has no timestamp file
-# File output/tsv/ensembl_gene-ensembl_transcript.tsv is created 7.007752736262465 days ago (will be updated when >5 days)
+# File output/tsv/ensembl_gene-ensembl_transcript.tsv is created 6.99221075593074 days ago (will be updated when >5 days)
## Update config/ensembl_gene-ensembl_transcript/config.yaml => output/tsv/ensembl_gene-ensembl_transcript.tsv
-< 2024-10-18T20:56:06 ensembl_gene-ensembl_transcript
+< 2024-10-25T20:46:56 ensembl_gene-ensembl_transcript
togoid-config config/ensembl_gene-ensembl_transcript update
# Success: output/tsv/ensembl_gene-ensembl_transcript.tsv is updated
-> 2024-10-18T20:58:09 ensembl_gene-ensembl_transcript
+> 2024-10-25T20:48:57 ensembl_gene-ensembl_transcript
Rule for TSV (output/tsv/ensembl_gene-ensembl_transcript.tsv)
------------------------------
Investigating output/tsv/ensembl_gene-ensembl_transcript.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:58:09 +0900
+timestamp: 2024-10-25 20:48:57 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ensembl (2024-10-18 20:58:09 +0900)
-latest-prerequisite time: 2024-10-18 20:58:09 +0900
+--prepare:ensembl (2024-10-25 20:48:57 +0900)
+latest-prerequisite time: 2024-10-25 20:48:57 +0900
................................
### Update TSV for ensembl_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ensembl_gene-hgnc.tsv is newer than config/ensembl_gene-hgnc/config.yaml
# File output/tsv/ensembl_gene-hgnc.tsv has no timestamp file
-# File output/tsv/ensembl_gene-hgnc.tsv is created 7.009174718070184 days ago (will be updated when >5 days)
+# File output/tsv/ensembl_gene-hgnc.tsv is created 6.99359585480081 days ago (will be updated when >5 days)
## Update config/ensembl_gene-hgnc/config.yaml => output/tsv/ensembl_gene-hgnc.tsv
-< 2024-10-18T20:58:09 ensembl_gene-hgnc
+< 2024-10-25T20:48:57 ensembl_gene-hgnc
togoid-config config/ensembl_gene-hgnc update
# Success: output/tsv/ensembl_gene-hgnc.tsv is updated
-> 2024-10-18T20:58:10 ensembl_gene-hgnc
+> 2024-10-25T20:48:57 ensembl_gene-hgnc
Rule for TSV (output/tsv/ensembl_gene-hgnc.tsv)
------------------------------
Investigating output/tsv/ensembl_gene-hgnc.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 20:58:10 +0900
+timestamp: 2024-10-25 20:48:57 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ensembl (2024-10-18 20:58:10 +0900)
-latest-prerequisite time: 2024-10-18 20:58:10 +0900
+--prepare:ensembl (2024-10-25 20:48:57 +0900)
+latest-prerequisite time: 2024-10-25 20:48:57 +0900
................................
### Update TSV for ensembl_gene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ensembl_gene-ncbigene.tsv is newer than config/ensembl_gene-ncbigene/config.yaml
# File output/tsv/ensembl_gene-ncbigene.tsv has no timestamp file
-# File output/tsv/ensembl_gene-ncbigene.tsv is created 7.00781898936008 days ago (will be updated when >5 days)
+# File output/tsv/ensembl_gene-ncbigene.tsv is created 6.992256823714849 days ago (will be updated when >5 days)
## Update config/ensembl_gene-ncbigene/config.yaml => output/tsv/ensembl_gene-ncbigene.tsv
-< 2024-10-18T20:58:10 ensembl_gene-ncbigene
+< 2024-10-25T20:48:57 ensembl_gene-ncbigene
togoid-config config/ensembl_gene-ncbigene update
Warning: Failed to retrieve taxon:8840 in loop_count:1
Warning: Failed to retrieve taxon:9771 in loop_count:1
@@ -1336,25 +1337,25 @@ Warning: Failed to retrieve taxon:99837 in loop_count:1
Warning: Failed to retrieve taxon:37032 in loop_count:1
Warning: Failed to retrieve taxon:181631 in loop_count:1
# Success: output/tsv/ensembl_gene-ncbigene.tsv is updated
-> 2024-10-18T21:00:06 ensembl_gene-ncbigene
+> 2024-10-25T20:50:52 ensembl_gene-ncbigene
Rule for TSV (output/tsv/ensembl_gene-ncbigene.tsv)
------------------------------
Investigating output/tsv/ensembl_gene-ncbigene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:00:06 +0900
+timestamp: 2024-10-25 20:50:52 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ensembl (2024-10-18 21:00:06 +0900)
-latest-prerequisite time: 2024-10-18 21:00:06 +0900
+--prepare:ensembl (2024-10-25 20:50:52 +0900)
+latest-prerequisite time: 2024-10-25 20:50:52 +0900
................................
### Update TSV for ensembl_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ensembl_gene-uniprot.tsv is newer than config/ensembl_gene-uniprot/config.yaml
# File output/tsv/ensembl_gene-uniprot.tsv has no timestamp file
-# File output/tsv/ensembl_gene-uniprot.tsv is created 7.008176697093345 days ago (will be updated when >5 days)
+# File output/tsv/ensembl_gene-uniprot.tsv is created 6.992606558201424 days ago (will be updated when >5 days)
## Update config/ensembl_gene-uniprot/config.yaml => output/tsv/ensembl_gene-uniprot.tsv
-< 2024-10-18T21:00:06 ensembl_gene-uniprot
+< 2024-10-25T20:50:52 ensembl_gene-uniprot
togoid-config config/ensembl_gene-uniprot update
Warning: Failed to retrieve taxon:9771 in loop_count:1
Warning: Failed to retrieve taxon:8823 in loop_count:1
@@ -1413,109 +1414,109 @@ Warning: Failed to retrieve taxon:37032 in loop_count:1
Warning: Failed to retrieve taxon:181631 in loop_count:1
Warning: Failed to retrieve taxon:9999 in loop_count:1
# Success: output/tsv/ensembl_gene-uniprot.tsv is updated
-> 2024-10-18T21:01:30 ensembl_gene-uniprot
+> 2024-10-25T20:52:15 ensembl_gene-uniprot
Rule for TSV (output/tsv/ensembl_gene-uniprot.tsv)
------------------------------
Investigating output/tsv/ensembl_gene-uniprot.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:01:30 +0900
+timestamp: 2024-10-25 20:52:15 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ensembl (2024-10-18 21:01:30 +0900)
-latest-prerequisite time: 2024-10-18 21:01:30 +0900
+--prepare:ensembl (2024-10-25 20:52:15 +0900)
+latest-prerequisite time: 2024-10-25 20:52:15 +0900
................................
### Update TSV for ensembl_protein-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ensembl_protein-ensembl_transcript.tsv is newer than config/ensembl_protein-ensembl_transcript/config.yaml
# File output/tsv/ensembl_protein-ensembl_transcript.tsv has no timestamp file
-# File output/tsv/ensembl_protein-ensembl_transcript.tsv is created 7.007847789417997 days ago (will be updated when >5 days)
+# File output/tsv/ensembl_protein-ensembl_transcript.tsv is created 6.99223864606485 days ago (will be updated when >5 days)
## Update config/ensembl_protein-ensembl_transcript/config.yaml => output/tsv/ensembl_protein-ensembl_transcript.tsv
-< 2024-10-18T21:01:30 ensembl_protein-ensembl_transcript
+< 2024-10-25T20:52:15 ensembl_protein-ensembl_transcript
togoid-config config/ensembl_protein-ensembl_transcript update
# Success: output/tsv/ensembl_protein-ensembl_transcript.tsv is updated
-> 2024-10-18T21:03:26 ensembl_protein-ensembl_transcript
+> 2024-10-25T20:54:12 ensembl_protein-ensembl_transcript
Rule for TSV (output/tsv/ensembl_protein-ensembl_transcript.tsv)
------------------------------
Investigating output/tsv/ensembl_protein-ensembl_transcript.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:03:26 +0900
+timestamp: 2024-10-25 20:54:12 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ensembl (2024-10-18 21:03:26 +0900)
-latest-prerequisite time: 2024-10-18 21:03:26 +0900
+--prepare:ensembl (2024-10-25 20:54:12 +0900)
+latest-prerequisite time: 2024-10-25 20:54:12 +0900
................................
### Update TSV for ensembl_transcript-affy_probeset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ensembl_transcript-affy_probeset.tsv is newer than config/ensembl_transcript-affy_probeset/config.yaml
# File output/tsv/ensembl_transcript-affy_probeset.tsv has no timestamp file
-# File output/tsv/ensembl_transcript-affy_probeset.tsv is created 7.008542695860695 days ago (will be updated when >5 days)
+# File output/tsv/ensembl_transcript-affy_probeset.tsv is created 6.987861437970996 days ago (will be updated when >5 days)
## Update config/ensembl_transcript-affy_probeset/config.yaml => output/tsv/ensembl_transcript-affy_probeset.tsv
-< 2024-10-18T21:03:26 ensembl_transcript-affy_probeset
+< 2024-10-25T20:54:12 ensembl_transcript-affy_probeset
togoid-config config/ensembl_transcript-affy_probeset update
# Success: output/tsv/ensembl_transcript-affy_probeset.tsv is updated
-> 2024-10-18T21:11:40 ensembl_transcript-affy_probeset
+> 2024-10-25T20:55:20 ensembl_transcript-affy_probeset
Rule for TSV (output/tsv/ensembl_transcript-affy_probeset.tsv)
------------------------------
Investigating output/tsv/ensembl_transcript-affy_probeset.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:11:40 +0900
+timestamp: 2024-10-25 20:55:20 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ensembl (2024-10-18 21:11:40 +0900)
-latest-prerequisite time: 2024-10-18 21:11:40 +0900
+--prepare:ensembl (2024-10-25 20:55:20 +0900)
+latest-prerequisite time: 2024-10-25 20:55:20 +0900
................................
### Update TSV for ensembl_transcript-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ensembl_transcript-go.tsv is newer than config/ensembl_transcript-go/config.yaml
# File output/tsv/ensembl_transcript-go.tsv has no timestamp file
-# File output/tsv/ensembl_transcript-go.tsv is created 7.011464149574606 days ago (will be updated when >5 days)
+# File output/tsv/ensembl_transcript-go.tsv is created 6.985846124827997 days ago (will be updated when >5 days)
## Update config/ensembl_transcript-go/config.yaml => output/tsv/ensembl_transcript-go.tsv
-< 2024-10-18T21:11:40 ensembl_transcript-go
+< 2024-10-25T20:55:20 ensembl_transcript-go
togoid-config config/ensembl_transcript-go update
# Success: output/tsv/ensembl_transcript-go.tsv is updated
-> 2024-10-18T21:15:43 ensembl_transcript-go
+> 2024-10-25T20:59:19 ensembl_transcript-go
Rule for TSV (output/tsv/ensembl_transcript-go.tsv)
------------------------------
Investigating output/tsv/ensembl_transcript-go.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:15:43 +0900
+timestamp: 2024-10-25 20:59:19 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ensembl (2024-10-18 21:15:43 +0900)
-latest-prerequisite time: 2024-10-18 21:15:43 +0900
+--prepare:ensembl (2024-10-25 20:59:19 +0900)
+latest-prerequisite time: 2024-10-25 20:59:19 +0900
................................
### Update TSV for ensembl_transcript-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ensembl_transcript-hgnc.tsv is newer than config/ensembl_transcript-hgnc/config.yaml
# File output/tsv/ensembl_transcript-hgnc.tsv has no timestamp file
-# File output/tsv/ensembl_transcript-hgnc.tsv is created 7.014258113859132 days ago (will be updated when >5 days)
+# File output/tsv/ensembl_transcript-hgnc.tsv is created 6.98860399198184 days ago (will be updated when >5 days)
## Update config/ensembl_transcript-hgnc/config.yaml => output/tsv/ensembl_transcript-hgnc.tsv
-< 2024-10-18T21:15:43 ensembl_transcript-hgnc
+< 2024-10-25T20:59:19 ensembl_transcript-hgnc
togoid-config config/ensembl_transcript-hgnc update
# Success: output/tsv/ensembl_transcript-hgnc.tsv is updated
-> 2024-10-18T21:15:44 ensembl_transcript-hgnc
+> 2024-10-25T20:59:20 ensembl_transcript-hgnc
Rule for TSV (output/tsv/ensembl_transcript-hgnc.tsv)
------------------------------
Investigating output/tsv/ensembl_transcript-hgnc.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:15:44 +0900
+timestamp: 2024-10-25 20:59:20 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ensembl (2024-10-18 21:15:44 +0900)
-latest-prerequisite time: 2024-10-18 21:15:44 +0900
+--prepare:ensembl (2024-10-25 20:59:20 +0900)
+latest-prerequisite time: 2024-10-25 20:59:20 +0900
................................
### Update TSV for ensembl_transcript-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ensembl_transcript-refseq_rna.tsv is newer than config/ensembl_transcript-refseq_rna/config.yaml
# File output/tsv/ensembl_transcript-refseq_rna.tsv has no timestamp file
-# File output/tsv/ensembl_transcript-refseq_rna.tsv is created 7.011887949771528 days ago (will be updated when >5 days)
+# File output/tsv/ensembl_transcript-refseq_rna.tsv is created 6.98626440349066 days ago (will be updated when >5 days)
## Update config/ensembl_transcript-refseq_rna/config.yaml => output/tsv/ensembl_transcript-refseq_rna.tsv
-< 2024-10-18T21:15:44 ensembl_transcript-refseq_rna
+< 2024-10-25T20:59:20 ensembl_transcript-refseq_rna
togoid-config config/ensembl_transcript-refseq_rna update
Warning: Failed to retrieve taxon:8840 in loop_count:1
Warning: Failed to retrieve taxon:9771 in loop_count:1
@@ -1586,73 +1587,73 @@ Warning: Failed to retrieve taxon:99837 in loop_count:1
Warning: Failed to retrieve taxon:181631 in loop_count:1
Warning: Failed to retrieve taxon:99883 in loop_count:1
# Success: output/tsv/ensembl_transcript-refseq_rna.tsv is updated
-> 2024-10-18T21:19:07 ensembl_transcript-refseq_rna
+> 2024-10-25T21:02:47 ensembl_transcript-refseq_rna
Rule for TSV (output/tsv/ensembl_transcript-refseq_rna.tsv)
------------------------------
Investigating output/tsv/ensembl_transcript-refseq_rna.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:19:07 +0900
+timestamp: 2024-10-25 21:02:47 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ensembl (2024-10-18 21:19:07 +0900)
-latest-prerequisite time: 2024-10-18 21:19:07 +0900
+--prepare:ensembl (2024-10-25 21:02:47 +0900)
+latest-prerequisite time: 2024-10-25 21:02:47 +0900
................................
### Update TSV for gea-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/gea-bioproject.tsv is newer than config/gea-bioproject/config.yaml
# File output/tsv/gea-bioproject.tsv has no timestamp file
-# File output/tsv/gea-bioproject.tsv is created 7.014232095051955 days ago (will be updated when >5 days)
+# File output/tsv/gea-bioproject.tsv is created 6.988655657783252 days ago (will be updated when >5 days)
## Update config/gea-bioproject/config.yaml => output/tsv/gea-bioproject.tsv
-< 2024-10-18T21:19:07 gea-bioproject
+< 2024-10-25T21:02:47 gea-bioproject
togoid-config config/gea-bioproject update
# Success: output/tsv/gea-bioproject.tsv is updated
-> 2024-10-18T21:19:07 gea-bioproject
+> 2024-10-25T21:02:47 gea-bioproject
Rule for TSV (output/tsv/gea-bioproject.tsv)
------------------------------
Investigating output/tsv/gea-bioproject.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 21:19:07 +0900
+timestamp: 2024-10-25 21:02:47 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for gea-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/gea-biosample.tsv is newer than config/gea-biosample/config.yaml
# File output/tsv/gea-biosample.tsv has no timestamp file
-# File output/tsv/gea-biosample.tsv is created 7.014231600494526 days ago (will be updated when >5 days)
+# File output/tsv/gea-biosample.tsv is created 6.988655518242511 days ago (will be updated when >5 days)
## Update config/gea-biosample/config.yaml => output/tsv/gea-biosample.tsv
-< 2024-10-18T21:19:07 gea-biosample
+< 2024-10-25T21:02:47 gea-biosample
togoid-config config/gea-biosample update
# Success: output/tsv/gea-biosample.tsv is updated
-> 2024-10-18T21:19:07 gea-biosample
+> 2024-10-25T21:02:48 gea-biosample
Rule for TSV (output/tsv/gea-biosample.tsv)
------------------------------
Investigating output/tsv/gea-biosample.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 21:19:07 +0900
+timestamp: 2024-10-25 21:02:48 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for glycomotif-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/glycomotif-glytoucan.tsv is newer than config/glycomotif-glytoucan/config.yaml
# File output/tsv/glycomotif-glytoucan.tsv has no timestamp file
-# File output/tsv/glycomotif-glytoucan.tsv is created 62.99437466890773 days ago (will be updated when >5 days)
+# File output/tsv/glycomotif-glytoucan.tsv is created 69.9830351973932 days ago (will be updated when >5 days)
## Update config/glycomotif-glytoucan/config.yaml => output/tsv/glycomotif-glytoucan.tsv
-< 2024-10-18T21:19:07 glycomotif-glytoucan
+< 2024-10-25T21:02:48 glycomotif-glytoucan
togoid-config config/glycomotif-glytoucan update
Error: HTTP Error 502: Bad Gateway: https://api.alpha.glycosmos.org/partialmatch?wurcs=WURCS%3D2.0%2F4%2C10%2C9%2F%5Ba2122h-1b_1-5%5D%5Ba2112h-1b_1-5%5D%5BAad21122h-2a_2-6_5%2ANCC%2F3%3DO%5D%5Ba2112h-1b_1-5_2%2ANCC%2F3%3DO%5D%2F1-2-3-3-3-4-2-3-3-3%2Fa4-b1_b3-c2_b4-f1_c8-d2_d8-e2_f3-g1_f6-j2_g3-h2_h8-i2&rootnode=true G14091MR
# Error: output/tsv/glycomotif-glytoucan.tsv new file size per old 0 / 2804382 = 0.0 < 0.5
# Error: Failed to create output/tsv/glycomotif-glytoucan.tsv or created file was empty
# Failure: output/tsv/glycomotif-glytoucan.tsv is not updated
-> 2024-10-18T21:19:43 glycomotif-glytoucan
+> 2024-10-25T21:03:23 glycomotif-glytoucan
Rule for TSV (output/tsv/glycomotif-glytoucan.tsv)
------------------------------
Investigating output/tsv/glycomotif-glytoucan.tsv
@@ -1661,19 +1662,19 @@ task needed: true
timestamp: 2024-08-16 21:27:13 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for glytoucan-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/glytoucan-doid.tsv is newer than config/glytoucan-doid/config.yaml
# File output/tsv/glytoucan-doid.tsv is older than input/glytoucan/download.lock
## Update config/glytoucan-doid/config.yaml => output/tsv/glytoucan-doid.tsv
-< 2024-10-18T21:19:43 glytoucan-doid
+< 2024-10-25T21:03:23 glytoucan-doid
togoid-config config/glytoucan-doid update
# Error: output/tsv/glytoucan-doid.tsv new file size per old 1538 / 4376 = 0.35146252285191953 < 0.5
# Failure: output/tsv/glytoucan-doid.tsv is not updated
-> 2024-10-18T21:19:50 glytoucan-doid
+> 2024-10-25T21:03:30 glytoucan-doid
Rule for TSV (output/tsv/glytoucan-doid.tsv)
------------------------------
Investigating output/tsv/glytoucan-doid.tsv
@@ -1682,59 +1683,58 @@ task needed: true
timestamp: 2024-03-22 20:42:15 +0900
pre-requisites:
--output/tsv/ ()
---prepare:glytoucan (2024-10-18 21:19:50 +0900)
-latest-prerequisite time: 2024-10-18 21:19:50 +0900
+--prepare:glytoucan (2024-10-25 21:03:30 +0900)
+latest-prerequisite time: 2024-10-25 21:03:30 +0900
................................
### Update TSV for glytoucan-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/glytoucan-ncbigene.tsv is newer than config/glytoucan-ncbigene/config.yaml
# File output/tsv/glytoucan-ncbigene.tsv is older than input/glytoucan/download.lock
## Update config/glytoucan-ncbigene/config.yaml => output/tsv/glytoucan-ncbigene.tsv
-< 2024-10-18T21:19:50 glytoucan-ncbigene
+< 2024-10-25T21:03:30 glytoucan-ncbigene
togoid-config config/glytoucan-ncbigene update
# Success: output/tsv/glytoucan-ncbigene.tsv is updated
-> 2024-10-18T21:19:51 glytoucan-ncbigene
+> 2024-10-25T21:03:30 glytoucan-ncbigene
Rule for TSV (output/tsv/glytoucan-ncbigene.tsv)
------------------------------
Investigating output/tsv/glytoucan-ncbigene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:19:51 +0900
+timestamp: 2024-10-25 21:03:30 +0900
pre-requisites:
--output/tsv/ ()
---prepare:glytoucan (2024-10-18 21:19:51 +0900)
-latest-prerequisite time: 2024-10-18 21:19:51 +0900
+--prepare:glytoucan (2024-10-25 21:03:30 +0900)
+latest-prerequisite time: 2024-10-25 21:03:30 +0900
................................
### Update TSV for glytoucan-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/glytoucan-uniprot.tsv is newer than config/glytoucan-uniprot/config.yaml
# File output/tsv/glytoucan-uniprot.tsv is older than input/glytoucan/download.lock
## Update config/glytoucan-uniprot/config.yaml => output/tsv/glytoucan-uniprot.tsv
-< 2024-10-18T21:19:51 glytoucan-uniprot
+< 2024-10-25T21:03:31 glytoucan-uniprot
togoid-config config/glytoucan-uniprot update
# Success: output/tsv/glytoucan-uniprot.tsv is updated
-> 2024-10-18T21:19:53 glytoucan-uniprot
+> 2024-10-25T21:03:32 glytoucan-uniprot
Rule for TSV (output/tsv/glytoucan-uniprot.tsv)
------------------------------
Investigating output/tsv/glytoucan-uniprot.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:19:53 +0900
+timestamp: 2024-10-25 21:03:32 +0900
pre-requisites:
--output/tsv/ ()
---prepare:glytoucan (2024-10-18 21:19:53 +0900)
-latest-prerequisite time: 2024-10-18 21:19:53 +0900
+--prepare:glytoucan (2024-10-25 21:03:32 +0900)
+latest-prerequisite time: 2024-10-25 21:03:32 +0900
................................
-### Update TSV for hgnc-ccds if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
-# File output/tsv/hgnc-ccds.tsv is newer than config/hgnc-ccds/config.yaml
-# File output/tsv/hgnc-ccds.tsv is older than input/hgnc/download.lock
+### Update TSV for hgnc-ccds if check_tsv_filesize false or check_config_timestamp true or check_tsv_timestamp true
+# File output/tsv/hgnc-ccds.tsv is older than config/hgnc-ccds/config.yaml
## Update config/hgnc-ccds/config.yaml => output/tsv/hgnc-ccds.tsv
-< 2024-10-18T21:19:53 hgnc-ccds
+< 2024-10-25T21:03:32 hgnc-ccds
togoid-config config/hgnc-ccds update
-# Error: output/tsv/hgnc-ccds.tsv new file size per old 260816 / 544502 = 0.47899915886443023 < 0.5
+# Error: output/tsv/hgnc-ccds.tsv new file size per old 252491 / 544502 = 0.46370995882476096 < 0.5
# Failure: output/tsv/hgnc-ccds.tsv is not updated
-> 2024-10-18T21:19:54 hgnc-ccds
+> 2024-10-25T21:03:33 hgnc-ccds
Rule for TSV (output/tsv/hgnc-ccds.tsv)
------------------------------
Investigating output/tsv/hgnc-ccds.tsv
@@ -1743,288 +1743,284 @@ task needed: true
timestamp: 2024-08-16 21:27:23 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:19:54 +0900)
-latest-prerequisite time: 2024-10-18 21:19:54 +0900
+--prepare:hgnc (2024-10-25 21:03:33 +0900)
+latest-prerequisite time: 2024-10-25 21:03:33 +0900
................................
### Update TSV for hgnc-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/hgnc-ec.tsv is newer than config/hgnc-ec/config.yaml
# File output/tsv/hgnc-ec.tsv is older than input/hgnc/download.lock
## Update config/hgnc-ec/config.yaml => output/tsv/hgnc-ec.tsv
-< 2024-10-18T21:19:54 hgnc-ec
+< 2024-10-25T21:03:33 hgnc-ec
togoid-config config/hgnc-ec update
# Success: output/tsv/hgnc-ec.tsv is updated
-> 2024-10-18T21:19:54 hgnc-ec
+> 2024-10-25T21:03:33 hgnc-ec
Rule for TSV (output/tsv/hgnc-ec.tsv)
------------------------------
Investigating output/tsv/hgnc-ec.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:19:54 +0900
+timestamp: 2024-10-25 21:03:33 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:19:54 +0900)
-latest-prerequisite time: 2024-10-18 21:19:54 +0900
+--prepare:hgnc (2024-10-25 21:03:33 +0900)
+latest-prerequisite time: 2024-10-25 21:03:33 +0900
................................
### Update TSV for hgnc-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/hgnc-ensembl_gene.tsv is newer than config/hgnc-ensembl_gene/config.yaml
# File output/tsv/hgnc-ensembl_gene.tsv is older than input/hgnc/download.lock
## Update config/hgnc-ensembl_gene/config.yaml => output/tsv/hgnc-ensembl_gene.tsv
-< 2024-10-18T21:19:54 hgnc-ensembl_gene
+< 2024-10-25T21:03:33 hgnc-ensembl_gene
togoid-config config/hgnc-ensembl_gene update
# Success: output/tsv/hgnc-ensembl_gene.tsv is updated
-> 2024-10-18T21:19:55 hgnc-ensembl_gene
+> 2024-10-25T21:03:34 hgnc-ensembl_gene
Rule for TSV (output/tsv/hgnc-ensembl_gene.tsv)
------------------------------
Investigating output/tsv/hgnc-ensembl_gene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:19:55 +0900
+timestamp: 2024-10-25 21:03:34 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:19:55 +0900)
-latest-prerequisite time: 2024-10-18 21:19:55 +0900
+--prepare:hgnc (2024-10-25 21:03:34 +0900)
+latest-prerequisite time: 2024-10-25 21:03:34 +0900
................................
### Update TSV for hgnc-hgnc_symbol if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/hgnc-hgnc_symbol.tsv is newer than config/hgnc-hgnc_symbol/config.yaml
# File output/tsv/hgnc-hgnc_symbol.tsv is older than input/hgnc/download.lock
## Update config/hgnc-hgnc_symbol/config.yaml => output/tsv/hgnc-hgnc_symbol.tsv
-< 2024-10-18T21:19:55 hgnc-hgnc_symbol
+< 2024-10-25T21:03:34 hgnc-hgnc_symbol
togoid-config config/hgnc-hgnc_symbol update
# Success: output/tsv/hgnc-hgnc_symbol.tsv is updated
-> 2024-10-18T21:19:55 hgnc-hgnc_symbol
+> 2024-10-25T21:03:34 hgnc-hgnc_symbol
Rule for TSV (output/tsv/hgnc-hgnc_symbol.tsv)
------------------------------
Investigating output/tsv/hgnc-hgnc_symbol.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:19:55 +0900
+timestamp: 2024-10-25 21:03:34 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:19:55 +0900)
-latest-prerequisite time: 2024-10-18 21:19:55 +0900
+--prepare:hgnc (2024-10-25 21:03:34 +0900)
+latest-prerequisite time: 2024-10-25 21:03:34 +0900
................................
### Update TSV for hgnc-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/hgnc-insdc.tsv is newer than config/hgnc-insdc/config.yaml
# File output/tsv/hgnc-insdc.tsv is older than input/hgnc/download.lock
## Update config/hgnc-insdc/config.yaml => output/tsv/hgnc-insdc.tsv
-< 2024-10-18T21:19:55 hgnc-insdc
+< 2024-10-25T21:03:34 hgnc-insdc
togoid-config config/hgnc-insdc update
# Success: output/tsv/hgnc-insdc.tsv is updated
-> 2024-10-18T21:19:56 hgnc-insdc
+> 2024-10-25T21:03:35 hgnc-insdc
Rule for TSV (output/tsv/hgnc-insdc.tsv)
------------------------------
Investigating output/tsv/hgnc-insdc.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:19:56 +0900
+timestamp: 2024-10-25 21:03:35 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:19:56 +0900)
-latest-prerequisite time: 2024-10-18 21:19:56 +0900
+--prepare:hgnc (2024-10-25 21:03:35 +0900)
+latest-prerequisite time: 2024-10-25 21:03:35 +0900
................................
### Update TSV for hgnc-lrg if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/hgnc-lrg.tsv is newer than config/hgnc-lrg/config.yaml
# File output/tsv/hgnc-lrg.tsv is older than input/hgnc/download.lock
## Update config/hgnc-lrg/config.yaml => output/tsv/hgnc-lrg.tsv
-< 2024-10-18T21:19:56 hgnc-lrg
+< 2024-10-25T21:03:35 hgnc-lrg
togoid-config config/hgnc-lrg update
# Success: output/tsv/hgnc-lrg.tsv is updated
-> 2024-10-18T21:19:56 hgnc-lrg
+> 2024-10-25T21:03:35 hgnc-lrg
Rule for TSV (output/tsv/hgnc-lrg.tsv)
------------------------------
Investigating output/tsv/hgnc-lrg.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:19:56 +0900
+timestamp: 2024-10-25 21:03:35 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:19:56 +0900)
-latest-prerequisite time: 2024-10-18 21:19:56 +0900
+--prepare:hgnc (2024-10-25 21:03:35 +0900)
+latest-prerequisite time: 2024-10-25 21:03:35 +0900
................................
### Update TSV for hgnc-mgi_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/hgnc-mgi_gene.tsv is newer than config/hgnc-mgi_gene/config.yaml
# File output/tsv/hgnc-mgi_gene.tsv is older than input/hgnc/download.lock
## Update config/hgnc-mgi_gene/config.yaml => output/tsv/hgnc-mgi_gene.tsv
-< 2024-10-18T21:19:56 hgnc-mgi_gene
+< 2024-10-25T21:03:35 hgnc-mgi_gene
togoid-config config/hgnc-mgi_gene update
# Success: output/tsv/hgnc-mgi_gene.tsv is updated
-> 2024-10-18T21:19:57 hgnc-mgi_gene
+> 2024-10-25T21:03:36 hgnc-mgi_gene
Rule for TSV (output/tsv/hgnc-mgi_gene.tsv)
------------------------------
Investigating output/tsv/hgnc-mgi_gene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:19:57 +0900
+timestamp: 2024-10-25 21:03:36 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:19:57 +0900)
-latest-prerequisite time: 2024-10-18 21:19:57 +0900
+--prepare:hgnc (2024-10-25 21:03:36 +0900)
+latest-prerequisite time: 2024-10-25 21:03:36 +0900
................................
### Update TSV for hgnc-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/hgnc-mirbase.tsv is newer than config/hgnc-mirbase/config.yaml
# File output/tsv/hgnc-mirbase.tsv is older than input/hgnc/download.lock
## Update config/hgnc-mirbase/config.yaml => output/tsv/hgnc-mirbase.tsv
-< 2024-10-18T21:19:57 hgnc-mirbase
+< 2024-10-25T21:03:36 hgnc-mirbase
togoid-config config/hgnc-mirbase update
# Success: output/tsv/hgnc-mirbase.tsv is updated
-> 2024-10-18T21:19:57 hgnc-mirbase
+> 2024-10-25T21:03:37 hgnc-mirbase
Rule for TSV (output/tsv/hgnc-mirbase.tsv)
------------------------------
Investigating output/tsv/hgnc-mirbase.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:19:57 +0900
+timestamp: 2024-10-25 21:03:37 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:19:57 +0900)
-latest-prerequisite time: 2024-10-18 21:19:57 +0900
+--prepare:hgnc (2024-10-25 21:03:37 +0900)
+latest-prerequisite time: 2024-10-25 21:03:37 +0900
................................
### Update TSV for hgnc-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/hgnc-ncbigene.tsv is newer than config/hgnc-ncbigene/config.yaml
# File output/tsv/hgnc-ncbigene.tsv is older than input/hgnc/download.lock
## Update config/hgnc-ncbigene/config.yaml => output/tsv/hgnc-ncbigene.tsv
-< 2024-10-18T21:19:57 hgnc-ncbigene
+< 2024-10-25T21:03:37 hgnc-ncbigene
togoid-config config/hgnc-ncbigene update
# Success: output/tsv/hgnc-ncbigene.tsv is updated
-> 2024-10-18T21:19:58 hgnc-ncbigene
+> 2024-10-25T21:03:37 hgnc-ncbigene
Rule for TSV (output/tsv/hgnc-ncbigene.tsv)
------------------------------
Investigating output/tsv/hgnc-ncbigene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:19:58 +0900
+timestamp: 2024-10-25 21:03:37 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:19:58 +0900)
-latest-prerequisite time: 2024-10-18 21:19:58 +0900
+--prepare:hgnc (2024-10-25 21:03:37 +0900)
+latest-prerequisite time: 2024-10-25 21:03:37 +0900
................................
### Update TSV for hgnc-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/hgnc-omim_gene.tsv is newer than config/hgnc-omim_gene/config.yaml
# File output/tsv/hgnc-omim_gene.tsv is older than input/hgnc/download.lock
## Update config/hgnc-omim_gene/config.yaml => output/tsv/hgnc-omim_gene.tsv
-< 2024-10-18T21:19:58 hgnc-omim_gene
+< 2024-10-25T21:03:37 hgnc-omim_gene
togoid-config config/hgnc-omim_gene update
# Success: output/tsv/hgnc-omim_gene.tsv is updated
-> 2024-10-18T21:19:58 hgnc-omim_gene
+> 2024-10-25T21:03:38 hgnc-omim_gene
Rule for TSV (output/tsv/hgnc-omim_gene.tsv)
------------------------------
Investigating output/tsv/hgnc-omim_gene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:19:58 +0900
+timestamp: 2024-10-25 21:03:38 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:19:58 +0900)
-latest-prerequisite time: 2024-10-18 21:19:58 +0900
+--prepare:hgnc (2024-10-25 21:03:38 +0900)
+latest-prerequisite time: 2024-10-25 21:03:38 +0900
................................
### Update TSV for hgnc-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/hgnc-pubmed.tsv is newer than config/hgnc-pubmed/config.yaml
# File output/tsv/hgnc-pubmed.tsv is older than input/hgnc/download.lock
## Update config/hgnc-pubmed/config.yaml => output/tsv/hgnc-pubmed.tsv
-< 2024-10-18T21:19:58 hgnc-pubmed
+< 2024-10-25T21:03:38 hgnc-pubmed
togoid-config config/hgnc-pubmed update
# Success: output/tsv/hgnc-pubmed.tsv is updated
-> 2024-10-18T21:19:59 hgnc-pubmed
+> 2024-10-25T21:03:38 hgnc-pubmed
Rule for TSV (output/tsv/hgnc-pubmed.tsv)
------------------------------
Investigating output/tsv/hgnc-pubmed.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:19:59 +0900
+timestamp: 2024-10-25 21:03:38 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:19:59 +0900)
-latest-prerequisite time: 2024-10-18 21:19:59 +0900
+--prepare:hgnc (2024-10-25 21:03:38 +0900)
+latest-prerequisite time: 2024-10-25 21:03:38 +0900
................................
### Update TSV for hgnc-refseq_genomic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/hgnc-refseq_genomic.tsv is newer than config/hgnc-refseq_genomic/config.yaml
# File output/tsv/hgnc-refseq_genomic.tsv is older than input/hgnc/download.lock
## Update config/hgnc-refseq_genomic/config.yaml => output/tsv/hgnc-refseq_genomic.tsv
-< 2024-10-18T21:19:59 hgnc-refseq_genomic
+< 2024-10-25T21:03:38 hgnc-refseq_genomic
togoid-config config/hgnc-refseq_genomic update
# Success: output/tsv/hgnc-refseq_genomic.tsv is updated
-> 2024-10-18T21:19:59 hgnc-refseq_genomic
+> 2024-10-25T21:03:39 hgnc-refseq_genomic
Rule for TSV (output/tsv/hgnc-refseq_genomic.tsv)
------------------------------
Investigating output/tsv/hgnc-refseq_genomic.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:19:59 +0900
+timestamp: 2024-10-25 21:03:39 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:19:59 +0900)
-latest-prerequisite time: 2024-10-18 21:19:59 +0900
+--prepare:hgnc (2024-10-25 21:03:39 +0900)
+latest-prerequisite time: 2024-10-25 21:03:39 +0900
................................
### Update TSV for hgnc-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/hgnc-refseq_rna.tsv is newer than config/hgnc-refseq_rna/config.yaml
# File output/tsv/hgnc-refseq_rna.tsv is older than input/hgnc/download.lock
## Update config/hgnc-refseq_rna/config.yaml => output/tsv/hgnc-refseq_rna.tsv
-< 2024-10-18T21:19:59 hgnc-refseq_rna
+< 2024-10-25T21:03:39 hgnc-refseq_rna
togoid-config config/hgnc-refseq_rna update
# Success: output/tsv/hgnc-refseq_rna.tsv is updated
-> 2024-10-18T21:20:00 hgnc-refseq_rna
+> 2024-10-25T21:03:39 hgnc-refseq_rna
Rule for TSV (output/tsv/hgnc-refseq_rna.tsv)
------------------------------
Investigating output/tsv/hgnc-refseq_rna.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:20:00 +0900
+timestamp: 2024-10-25 21:03:39 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:20:00 +0900)
-latest-prerequisite time: 2024-10-18 21:20:00 +0900
+--prepare:hgnc (2024-10-25 21:03:39 +0900)
+latest-prerequisite time: 2024-10-25 21:03:39 +0900
................................
### Update TSV for hgnc-rgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/hgnc-rgd.tsv is newer than config/hgnc-rgd/config.yaml
# File output/tsv/hgnc-rgd.tsv is older than input/hgnc/download.lock
## Update config/hgnc-rgd/config.yaml => output/tsv/hgnc-rgd.tsv
-< 2024-10-18T21:20:00 hgnc-rgd
+< 2024-10-25T21:03:39 hgnc-rgd
togoid-config config/hgnc-rgd update
# Success: output/tsv/hgnc-rgd.tsv is updated
-> 2024-10-18T21:20:01 hgnc-rgd
+> 2024-10-25T21:03:40 hgnc-rgd
Rule for TSV (output/tsv/hgnc-rgd.tsv)
------------------------------
Investigating output/tsv/hgnc-rgd.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:20:01 +0900
+timestamp: 2024-10-25 21:03:40 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:20:01 +0900)
-latest-prerequisite time: 2024-10-18 21:20:01 +0900
+--prepare:hgnc (2024-10-25 21:03:40 +0900)
+latest-prerequisite time: 2024-10-25 21:03:40 +0900
................................
-### Update TSV for hgnc-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
+### Update TSV for hgnc-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
# File output/tsv/hgnc-uniprot.tsv is newer than config/hgnc-uniprot/config.yaml
-# File output/tsv/hgnc-uniprot.tsv is older than input/hgnc/download.lock
-## Update config/hgnc-uniprot/config.yaml => output/tsv/hgnc-uniprot.tsv
-< 2024-10-18T21:20:01 hgnc-uniprot
-togoid-config config/hgnc-uniprot update
-# Success: output/tsv/hgnc-uniprot.tsv is updated
-> 2024-10-18T21:20:01 hgnc-uniprot
+# File output/tsv/hgnc-uniprot.tsv is newer than input/hgnc/download.lock
+# => Preserving output/tsv/hgnc-uniprot.tsv
Rule for TSV (output/tsv/hgnc-uniprot.tsv)
------------------------------
Investigating output/tsv/hgnc-uniprot.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 21:20:01 +0900
+timestamp: 2024-10-19 13:28:13 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hgnc (2024-10-18 21:20:01 +0900)
-latest-prerequisite time: 2024-10-18 21:20:01 +0900
+--prepare:hgnc (2024-10-25 21:03:40 +0900)
+latest-prerequisite time: 2024-10-25 21:03:40 +0900
................................
### Update TSV for hmdb-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2039,8 +2035,8 @@ task needed: true
timestamp: 2023-07-03 13:03:28 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hmdb (2024-10-18 21:20:01 +0900)
-latest-prerequisite time: 2024-10-18 21:20:01 +0900
+--prepare:hmdb (2024-10-25 21:03:40 +0900)
+latest-prerequisite time: 2024-10-25 21:03:40 +0900
................................
### Update TSV for hmdb-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2055,8 +2051,8 @@ task needed: true
timestamp: 2023-07-03 13:03:51 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hmdb (2024-10-18 21:20:01 +0900)
-latest-prerequisite time: 2024-10-18 21:20:01 +0900
+--prepare:hmdb (2024-10-25 21:03:40 +0900)
+latest-prerequisite time: 2024-10-25 21:03:40 +0900
................................
### Update TSV for hmdb-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2071,8 +2067,8 @@ task needed: true
timestamp: 2024-01-20 02:10:47 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hmdb (2024-10-18 21:20:01 +0900)
-latest-prerequisite time: 2024-10-18 21:20:01 +0900
+--prepare:hmdb (2024-10-25 21:03:40 +0900)
+latest-prerequisite time: 2024-10-25 21:03:40 +0900
................................
### Update TSV for hmdb-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2087,8 +2083,8 @@ task needed: true
timestamp: 2023-07-03 13:06:27 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hmdb (2024-10-18 21:20:01 +0900)
-latest-prerequisite time: 2024-10-18 21:20:01 +0900
+--prepare:hmdb (2024-10-25 21:03:40 +0900)
+latest-prerequisite time: 2024-10-25 21:03:40 +0900
................................
### Update TSV for homologene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2103,29 +2099,29 @@ task needed: true
timestamp: 2023-06-02 19:58:16 +0900
pre-requisites:
--output/tsv/ ()
---prepare:homologene (2024-10-18 21:20:01 +0900)
-latest-prerequisite time: 2024-10-18 21:20:01 +0900
+--prepare:homologene (2024-10-25 21:03:40 +0900)
+latest-prerequisite time: 2024-10-25 21:03:40 +0900
................................
### Update TSV for hp_inheritance-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/hp_inheritance-omim_phenotype.tsv is newer than config/hp_inheritance-omim_phenotype/config.yaml
# File output/tsv/hp_inheritance-omim_phenotype.tsv has no timestamp file
-# File output/tsv/hp_inheritance-omim_phenotype.tsv is created 7.01435553495478 days ago (will be updated when >5 days)
+# File output/tsv/hp_inheritance-omim_phenotype.tsv is created 6.988631731426308 days ago (will be updated when >5 days)
## Update config/hp_inheritance-omim_phenotype/config.yaml => output/tsv/hp_inheritance-omim_phenotype.tsv
-< 2024-10-18T21:20:01 hp_inheritance-omim_phenotype
+< 2024-10-25T21:03:40 hp_inheritance-omim_phenotype
togoid-config config/hp_inheritance-omim_phenotype update
# Success: output/tsv/hp_inheritance-omim_phenotype.tsv is updated
-> 2024-10-18T21:20:02 hp_inheritance-omim_phenotype
+> 2024-10-25T21:03:41 hp_inheritance-omim_phenotype
Rule for TSV (output/tsv/hp_inheritance-omim_phenotype.tsv)
------------------------------
Investigating output/tsv/hp_inheritance-omim_phenotype.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 21:20:02 +0900
+timestamp: 2024-10-25 21:03:41 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for hp_phenotype-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2140,8 +2136,8 @@ task needed: true
timestamp: 2024-08-16 21:27:32 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hp_phenotype (2024-10-18 21:20:02 +0900)
-latest-prerequisite time: 2024-10-18 21:20:02 +0900
+--prepare:hp_phenotype (2024-10-25 21:03:41 +0900)
+latest-prerequisite time: 2024-10-25 21:03:41 +0900
................................
### Update TSV for hp_phenotype-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2156,92 +2152,92 @@ task needed: true
timestamp: 2024-08-16 21:27:33 +0900
pre-requisites:
--output/tsv/ ()
---prepare:hp_phenotype (2024-10-18 21:20:02 +0900)
-latest-prerequisite time: 2024-10-18 21:20:02 +0900
+--prepare:hp_phenotype (2024-10-25 21:03:41 +0900)
+latest-prerequisite time: 2024-10-25 21:03:41 +0900
................................
### Update TSV for insdc-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/insdc-bioproject.tsv is newer than config/insdc-bioproject/config.yaml
# File output/tsv/insdc-bioproject.tsv has no timestamp file
-# File output/tsv/insdc-bioproject.tsv is created 7.014096726773368 days ago (will be updated when >5 days)
+# File output/tsv/insdc-bioproject.tsv is created 6.98833233663544 days ago (will be updated when >5 days)
## Update config/insdc-bioproject/config.yaml => output/tsv/insdc-bioproject.tsv
-< 2024-10-18T21:20:02 insdc-bioproject
+< 2024-10-25T21:03:41 insdc-bioproject
togoid-config config/insdc-bioproject update
# Success: output/tsv/insdc-bioproject.tsv is updated
-> 2024-10-18T21:20:29 insdc-bioproject
+> 2024-10-25T21:04:04 insdc-bioproject
Rule for TSV (output/tsv/insdc-bioproject.tsv)
------------------------------
Investigating output/tsv/insdc-bioproject.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 21:20:29 +0900
+timestamp: 2024-10-25 21:04:04 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for insdc-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/insdc-biosample.tsv is newer than config/insdc-biosample/config.yaml
# File output/tsv/insdc-biosample.tsv has no timestamp file
-# File output/tsv/insdc-biosample.tsv is created 7.013526151151146 days ago (will be updated when >5 days)
+# File output/tsv/insdc-biosample.tsv is created 6.9876077656075575 days ago (will be updated when >5 days)
## Update config/insdc-biosample/config.yaml => output/tsv/insdc-biosample.tsv
-< 2024-10-18T21:20:29 insdc-biosample
+< 2024-10-25T21:04:04 insdc-biosample
togoid-config config/insdc-biosample update
# Success: output/tsv/insdc-biosample.tsv is updated
-> 2024-10-18T21:21:55 insdc-biosample
+> 2024-10-25T21:05:20 insdc-biosample
Rule for TSV (output/tsv/insdc-biosample.tsv)
------------------------------
Investigating output/tsv/insdc-biosample.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 21:21:55 +0900
+timestamp: 2024-10-25 21:05:20 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for insdc_master-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/insdc_master-bioproject.tsv is newer than config/insdc_master-bioproject/config.yaml
# File output/tsv/insdc_master-bioproject.tsv has no timestamp file
-# File output/tsv/insdc_master-bioproject.tsv is created 7.014503328638345 days ago (will be updated when >5 days)
+# File output/tsv/insdc_master-bioproject.tsv is created 6.988462256175891 days ago (will be updated when >5 days)
## Update config/insdc_master-bioproject/config.yaml => output/tsv/insdc_master-bioproject.tsv
-< 2024-10-18T21:21:55 insdc_master-bioproject
+< 2024-10-25T21:05:20 insdc_master-bioproject
togoid-config config/insdc_master-bioproject update
# Success: output/tsv/insdc_master-bioproject.tsv is updated
-> 2024-10-18T21:21:57 insdc_master-bioproject
+> 2024-10-25T21:05:21 insdc_master-bioproject
Rule for TSV (output/tsv/insdc_master-bioproject.tsv)
------------------------------
Investigating output/tsv/insdc_master-bioproject.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 21:21:57 +0900
+timestamp: 2024-10-25 21:05:21 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for insdc_master-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/insdc_master-biosample.tsv is newer than config/insdc_master-biosample/config.yaml
# File output/tsv/insdc_master-biosample.tsv has no timestamp file
-# File output/tsv/insdc_master-biosample.tsv is created 7.014507826837511 days ago (will be updated when >5 days)
+# File output/tsv/insdc_master-biosample.tsv is created 6.988461014049052 days ago (will be updated when >5 days)
## Update config/insdc_master-biosample/config.yaml => output/tsv/insdc_master-biosample.tsv
-< 2024-10-18T21:21:57 insdc_master-biosample
+< 2024-10-25T21:05:21 insdc_master-biosample
togoid-config config/insdc_master-biosample update
# Success: output/tsv/insdc_master-biosample.tsv is updated
-> 2024-10-18T21:21:58 insdc_master-biosample
+> 2024-10-25T21:05:23 insdc_master-biosample
Rule for TSV (output/tsv/insdc_master-biosample.tsv)
------------------------------
Investigating output/tsv/insdc_master-biosample.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 21:21:58 +0900
+timestamp: 2024-10-25 21:05:23 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for interpro-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2256,8 +2252,8 @@ task needed: true
timestamp: 2024-10-06 20:21:42 +0900
pre-requisites:
--output/tsv/ ()
---prepare:interpro (2024-10-18 21:21:58 +0900)
-latest-prerequisite time: 2024-10-18 21:21:58 +0900
+--prepare:interpro (2024-10-25 21:05:23 +0900)
+latest-prerequisite time: 2024-10-25 21:05:23 +0900
................................
### Update TSV for interpro-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2272,8 +2268,8 @@ task needed: true
timestamp: 2024-10-06 20:21:44 +0900
pre-requisites:
--output/tsv/ ()
---prepare:interpro (2024-10-18 21:21:58 +0900)
-latest-prerequisite time: 2024-10-18 21:21:58 +0900
+--prepare:interpro (2024-10-25 21:05:23 +0900)
+latest-prerequisite time: 2024-10-25 21:05:23 +0900
................................
### Update TSV for interpro-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2288,8 +2284,8 @@ task needed: true
timestamp: 2024-10-06 20:21:46 +0900
pre-requisites:
--output/tsv/ ()
---prepare:interpro (2024-10-18 21:21:58 +0900)
-latest-prerequisite time: 2024-10-18 21:21:58 +0900
+--prepare:interpro (2024-10-25 21:05:23 +0900)
+latest-prerequisite time: 2024-10-25 21:05:23 +0900
................................
### Update TSV for interpro-prosite if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2304,8 +2300,8 @@ task needed: true
timestamp: 2024-10-06 20:21:47 +0900
pre-requisites:
--output/tsv/ ()
---prepare:interpro (2024-10-18 21:21:58 +0900)
-latest-prerequisite time: 2024-10-18 21:21:58 +0900
+--prepare:interpro (2024-10-25 21:05:23 +0900)
+latest-prerequisite time: 2024-10-25 21:05:23 +0900
................................
### Update TSV for interpro-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2320,8 +2316,8 @@ task needed: true
timestamp: 2024-10-06 20:21:49 +0900
pre-requisites:
--output/tsv/ ()
---prepare:interpro (2024-10-18 21:21:58 +0900)
-latest-prerequisite time: 2024-10-18 21:21:58 +0900
+--prepare:interpro (2024-10-25 21:05:23 +0900)
+latest-prerequisite time: 2024-10-25 21:05:23 +0900
................................
### Update TSV for interpro-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2336,8 +2332,8 @@ task needed: true
timestamp: 2024-10-06 20:21:51 +0900
pre-requisites:
--output/tsv/ ()
---prepare:interpro (2024-10-18 21:21:58 +0900)
-latest-prerequisite time: 2024-10-18 21:21:58 +0900
+--prepare:interpro (2024-10-25 21:05:23 +0900)
+latest-prerequisite time: 2024-10-25 21:05:23 +0900
................................
### Update TSV for interpro-smart if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2352,8 +2348,8 @@ task needed: true
timestamp: 2024-10-06 20:21:53 +0900
pre-requisites:
--output/tsv/ ()
---prepare:interpro (2024-10-18 21:21:58 +0900)
-latest-prerequisite time: 2024-10-18 21:21:58 +0900
+--prepare:interpro (2024-10-25 21:05:23 +0900)
+latest-prerequisite time: 2024-10-25 21:05:23 +0900
................................
### Update TSV for interpro-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -2368,79 +2364,79 @@ task needed: true
timestamp: 2024-10-07 00:10:25 +0900
pre-requisites:
--output/tsv/ ()
---prepare:interpro (2024-10-18 21:21:58 +0900)
-latest-prerequisite time: 2024-10-18 21:21:58 +0900
+--prepare:interpro (2024-10-25 21:05:23 +0900)
+latest-prerequisite time: 2024-10-25 21:05:23 +0900
................................
### Update TSV for jga_study-jga_dataset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/jga_study-jga_dataset.tsv is newer than config/jga_study-jga_dataset/config.yaml
# File output/tsv/jga_study-jga_dataset.tsv has no timestamp file
-# File output/tsv/jga_study-jga_dataset.tsv is created 11.88300357598882 days ago (will be updated when >5 days)
+# File output/tsv/jga_study-jga_dataset.tsv is created 6.988475164033669 days ago (will be updated when >5 days)
## Update config/jga_study-jga_dataset/config.yaml => output/tsv/jga_study-jga_dataset.tsv
-< 2024-10-18T21:21:58 jga_study-jga_dataset
+< 2024-10-25T21:05:23 jga_study-jga_dataset
togoid-config config/jga_study-jga_dataset update
# Success: output/tsv/jga_study-jga_dataset.tsv is updated
-> 2024-10-18T21:21:59 jga_study-jga_dataset
+> 2024-10-25T21:05:24 jga_study-jga_dataset
Rule for TSV (output/tsv/jga_study-jga_dataset.tsv)
------------------------------
Investigating output/tsv/jga_study-jga_dataset.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 21:21:59 +0900
+timestamp: 2024-10-25 21:05:24 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for jga_study-nbdc_human_db if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/jga_study-nbdc_human_db.tsv is newer than config/jga_study-nbdc_human_db/config.yaml
# File output/tsv/jga_study-nbdc_human_db.tsv has no timestamp file
-# File output/tsv/jga_study-nbdc_human_db.tsv is created 11.883006066844642 days ago (will be updated when >5 days)
+# File output/tsv/jga_study-nbdc_human_db.tsv is created 6.988474710809758 days ago (will be updated when >5 days)
## Update config/jga_study-nbdc_human_db/config.yaml => output/tsv/jga_study-nbdc_human_db.tsv
-< 2024-10-18T21:21:59 jga_study-nbdc_human_db
+< 2024-10-25T21:05:24 jga_study-nbdc_human_db
togoid-config config/jga_study-nbdc_human_db update
# Success: output/tsv/jga_study-nbdc_human_db.tsv is updated
-> 2024-10-18T21:21:59 jga_study-nbdc_human_db
+> 2024-10-25T21:05:24 jga_study-nbdc_human_db
Rule for TSV (output/tsv/jga_study-nbdc_human_db.tsv)
------------------------------
Investigating output/tsv/jga_study-nbdc_human_db.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 21:21:59 +0900
+timestamp: 2024-10-25 21:05:24 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for jga_study-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/jga_study-pubmed.tsv is newer than config/jga_study-pubmed/config.yaml
# File output/tsv/jga_study-pubmed.tsv has no timestamp file
-# File output/tsv/jga_study-pubmed.tsv is created 11.883006302614733 days ago (will be updated when >5 days)
+# File output/tsv/jga_study-pubmed.tsv is created 6.988474845808183 days ago (will be updated when >5 days)
## Update config/jga_study-pubmed/config.yaml => output/tsv/jga_study-pubmed.tsv
-< 2024-10-18T21:21:59 jga_study-pubmed
+< 2024-10-25T21:05:24 jga_study-pubmed
togoid-config config/jga_study-pubmed update
# Success: output/tsv/jga_study-pubmed.tsv is updated
-> 2024-10-18T21:22:00 jga_study-pubmed
+> 2024-10-25T21:05:24 jga_study-pubmed
Rule for TSV (output/tsv/jga_study-pubmed.tsv)
------------------------------
Investigating output/tsv/jga_study-pubmed.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 21:22:00 +0900
+timestamp: 2024-10-25 21:05:24 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for lipidmaps-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/lipidmaps-chebi.tsv is newer than config/lipidmaps-chebi/config.yaml
# File output/tsv/lipidmaps-chebi.tsv has no timestamp file
-# File output/tsv/lipidmaps-chebi.tsv is created 27.70360147658065 days ago (will be updated when >5 days)
+# File output/tsv/lipidmaps-chebi.tsv is created 34.692080701998954 days ago (will be updated when >5 days)
## Update config/lipidmaps-chebi/config.yaml => output/tsv/lipidmaps-chebi.tsv
-< 2024-10-18T21:22:00 lipidmaps-chebi
+< 2024-10-25T21:05:24 lipidmaps-chebi
togoid-config config/lipidmaps-chebi update
# Error: output/tsv/lipidmaps-chebi.tsv new file size per old 248 / 253350 = 0.0009788829682257747 < 0.5
# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML
@@ -2460,7 +2456,7 @@ togoid-config config/lipidmaps-chebi update
# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML problems. Please try again later.
# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML
# Failure: output/tsv/lipidmaps-chebi.tsv is not updated
-> 2024-10-18T21:22:03 lipidmaps-chebi
+> 2024-10-25T21:05:27 lipidmaps-chebi
Rule for TSV (output/tsv/lipidmaps-chebi.tsv)
------------------------------
Investigating output/tsv/lipidmaps-chebi.tsv
@@ -2469,16 +2465,16 @@ task needed: true
timestamp: 2024-09-21 04:28:49 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for lipidmaps-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/lipidmaps-inchi_key.tsv is newer than config/lipidmaps-inchi_key/config.yaml
# File output/tsv/lipidmaps-inchi_key.tsv has no timestamp file
-# File output/tsv/lipidmaps-inchi_key.tsv is created 27.70359093376825 days ago (will be updated when >5 days)
+# File output/tsv/lipidmaps-inchi_key.tsv is created 34.692069701658404 days ago (will be updated when >5 days)
## Update config/lipidmaps-inchi_key/config.yaml => output/tsv/lipidmaps-inchi_key.tsv
-< 2024-10-18T21:22:03 lipidmaps-inchi_key
+< 2024-10-25T21:05:27 lipidmaps-inchi_key
togoid-config config/lipidmaps-inchi_key update
# Error: output/tsv/lipidmaps-inchi_key.tsv new file size per old 248 / 1976727 = 0.0001254599142926666 < 0.5
# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML
@@ -2498,7 +2494,7 @@ togoid-config config/lipidmaps-inchi_key update
# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML problems. Please try again later.
# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML
# Failure: output/tsv/lipidmaps-inchi_key.tsv is not updated
-> 2024-10-18T21:22:04 lipidmaps-inchi_key
+> 2024-10-25T21:05:29 lipidmaps-inchi_key
Rule for TSV (output/tsv/lipidmaps-inchi_key.tsv)
------------------------------
Investigating output/tsv/lipidmaps-inchi_key.tsv
@@ -2507,16 +2503,16 @@ task needed: true
timestamp: 2024-09-21 04:28:53 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for lipidmaps-swisslipids if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/lipidmaps-swisslipids.tsv is newer than config/lipidmaps-swisslipids/config.yaml
# File output/tsv/lipidmaps-swisslipids.tsv has no timestamp file
-# File output/tsv/lipidmaps-swisslipids.tsv is created 27.703572830859027 days ago (will be updated when >5 days)
+# File output/tsv/lipidmaps-swisslipids.tsv is created 34.6920512838343 days ago (will be updated when >5 days)
## Update config/lipidmaps-swisslipids/config.yaml => output/tsv/lipidmaps-swisslipids.tsv
-< 2024-10-18T21:22:04 lipidmaps-swisslipids
+< 2024-10-25T21:05:29 lipidmaps-swisslipids
togoid-config config/lipidmaps-swisslipids update
# Error: output/tsv/lipidmaps-swisslipids.tsv new file size per old 248 / 284047 = 0.0008730949455547849 < 0.5
# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML
@@ -2536,7 +2532,7 @@ togoid-config config/lipidmaps-swisslipids update
# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML problems. Please try again later.
# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML
# Failure: output/tsv/lipidmaps-swisslipids.tsv is not updated
-> 2024-10-18T21:22:06 lipidmaps-swisslipids
+> 2024-10-25T21:05:30 lipidmaps-swisslipids
Rule for TSV (output/tsv/lipidmaps-swisslipids.tsv)
------------------------------
Investigating output/tsv/lipidmaps-swisslipids.tsv
@@ -2545,632 +2541,353 @@ task needed: true
timestamp: 2024-09-21 04:28:56 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for mbgd_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mbgd_gene-uniprot.tsv is newer than config/mbgd_gene-uniprot/config.yaml
# File output/tsv/mbgd_gene-uniprot.tsv has no timestamp file
-# File output/tsv/mbgd_gene-uniprot.tsv is created 11.85306963658839 days ago (will be updated when >5 days)
+# File output/tsv/mbgd_gene-uniprot.tsv is created 6.956488260008009 days ago (will be updated when >5 days)
## Update config/mbgd_gene-uniprot/config.yaml => output/tsv/mbgd_gene-uniprot.tsv
-< 2024-10-18T21:22:06 mbgd_gene-uniprot
+< 2024-10-25T21:05:30 mbgd_gene-uniprot
togoid-config config/mbgd_gene-uniprot update
-Warning: Failed to retrieve taxon:cdg in loop_count:1
-Warning: Failed to retrieve taxon:coe in loop_count:1
-Warning: Failed to retrieve taxon:ene in loop_count:1
-Warning: Failed to retrieve taxon:chr in loop_count:1
-Warning: Failed to retrieve taxon:hpyr in loop_count:1
-Warning: Failed to retrieve taxon:lmoe in loop_count:1
-Warning: Failed to retrieve taxon:gm02408 in loop_count:1
-Warning: Failed to retrieve taxon:hhm in loop_count:1
-Warning: Failed to retrieve taxon:hpym in loop_count:1
-Warning: Failed to retrieve taxon:ctln in loop_count:1
-Warning: Failed to retrieve taxon:gm02410 in loop_count:1
-Warning: Failed to retrieve taxon:amal in loop_count:1
-Warning: Failed to retrieve taxon:lmob in loop_count:1
-Warning: Failed to retrieve taxon:cjei in loop_count:1
-Warning: Failed to retrieve taxon:sik in loop_count:1
-Warning: Failed to retrieve taxon:srb in loop_count:1
-Warning: Failed to retrieve taxon:axn in loop_count:1
-Warning: Failed to retrieve taxon:gm02954 in loop_count:1
-Warning: Failed to retrieve taxon:axo in loop_count:1
-Warning: Failed to retrieve taxon:lpm in loop_count:1
-Warning: Failed to retrieve taxon:hem in loop_count:1
-Warning: Failed to retrieve taxon:hpaz in loop_count:1
-Warning: Failed to retrieve taxon:sagr in loop_count:1
-Warning: Failed to retrieve taxon:dmg in loop_count:1
-Warning: Failed to retrieve taxon:nev in loop_count:1
-Warning: Failed to retrieve taxon:gm02988 in loop_count:1
-Warning: Failed to retrieve taxon:gm02989 in loop_count:1
-Warning: Failed to retrieve taxon:gm02990 in loop_count:1
-Warning: Failed to retrieve taxon:gm02835 in loop_count:1
-Warning: Failed to retrieve taxon:gm02950 in loop_count:1
-Warning: Failed to retrieve taxon:gm02997 in loop_count:1
-Warning: Failed to retrieve taxon:bcee in loop_count:1
-Warning: Failed to retrieve taxon:gm02986 in loop_count:1
-Warning: Failed to retrieve taxon:gm02994 in loop_count:1
-Warning: Failed to retrieve taxon:gm02995 in loop_count:1
-Warning: Failed to retrieve taxon:gm02996 in loop_count:1
-Warning: Failed to retrieve taxon:ppol in loop_count:1
-Warning: Failed to retrieve taxon:gm02958 in loop_count:1
-Warning: Failed to retrieve taxon:gm02978 in loop_count:1
-Warning: Failed to retrieve taxon:gm02979 in loop_count:1
-Warning: Failed to retrieve taxon:gm02980 in loop_count:1
-Warning: Failed to retrieve taxon:gm02981 in loop_count:1
-Warning: Failed to retrieve taxon:gm02993 in loop_count:1
-Warning: Failed to retrieve taxon:gm03003 in loop_count:1
-Warning: Failed to retrieve taxon:gm03004 in loop_count:1
-Warning: Failed to retrieve taxon:gm03005 in loop_count:1
-Warning: Failed to retrieve taxon:gm02952 in loop_count:1
-Warning: Failed to retrieve taxon:gm02953 in loop_count:1
-Warning: Failed to retrieve taxon:nvn in loop_count:1
-Warning: Failed to retrieve taxon:gm03001 in loop_count:1
-Warning: Failed to retrieve taxon:gm03002 in loop_count:1
-Warning: Failed to retrieve taxon:gm03155 in loop_count:1
-Warning: Failed to retrieve taxon:gm03139 in loop_count:1
-Warning: Failed to retrieve taxon:paec in loop_count:1
-Warning: Failed to retrieve taxon:paeo in loop_count:1
-Warning: Failed to retrieve taxon:spyo in loop_count:1
-Warning: Failed to retrieve taxon:gm03151 in loop_count:1
-Warning: Failed to retrieve taxon:gm03336 in loop_count:1
-Warning: Failed to retrieve taxon:gm03182 in loop_count:1
-Warning: Failed to retrieve taxon:hct in loop_count:1
-Warning: Failed to retrieve taxon:paei in loop_count:1
-Warning: Failed to retrieve taxon:paev in loop_count:1
-Warning: Failed to retrieve taxon:gm03365 in loop_count:1
-Warning: Failed to retrieve taxon:sio in loop_count:1
-Warning: Failed to retrieve taxon:siq in loop_count:1
-Warning: Failed to retrieve taxon:gm03361 in loop_count:1
-Warning: Failed to retrieve taxon:gm03425 in loop_count:1
-Warning: Failed to retrieve taxon:kpk in loop_count:1
-Warning: Failed to retrieve taxon:gm03413 in loop_count:1
-Warning: Failed to retrieve taxon:yel in loop_count:1
-Warning: Failed to retrieve taxon:gba in loop_count:1
-Warning: Failed to retrieve taxon:gm03667 in loop_count:1
-Warning: Failed to retrieve taxon:gm03600 in loop_count:1
-Warning: Failed to retrieve taxon:nid in loop_count:1
-Warning: Failed to retrieve taxon:mthe in loop_count:1
-Warning: Failed to retrieve taxon:gm03592 in loop_count:1
-Warning: Failed to retrieve taxon:gm03687 in loop_count:1
-Warning: Failed to retrieve taxon:gm03688 in loop_count:1
-Warning: Failed to retrieve taxon:gm03689 in loop_count:1
-Warning: Failed to retrieve taxon:gm03554 in loop_count:1
-Warning: Failed to retrieve taxon:alu in loop_count:1
-Warning: Failed to retrieve taxon:agw in loop_count:1
-Warning: Failed to retrieve taxon:arg in loop_count:1
-Warning: Failed to retrieve taxon:gm03624 in loop_count:1
-Warning: Failed to retrieve taxon:gm03679 in loop_count:1
-Warning: Failed to retrieve taxon:gm03680 in loop_count:1
-Warning: Failed to retrieve taxon:gm03681 in loop_count:1
-Warning: Failed to retrieve taxon:gm03682 in loop_count:1
-Warning: Failed to retrieve taxon:gm03683 in loop_count:1
-Warning: Failed to retrieve taxon:gm03684 in loop_count:1
-Warning: Failed to retrieve taxon:gm03685 in loop_count:1
-Warning: Failed to retrieve taxon:gm03686 in loop_count:1
-Warning: Failed to retrieve taxon:gm03674 in loop_count:1
-Warning: Failed to retrieve taxon:gm03675 in loop_count:1
-Warning: Failed to retrieve taxon:gm03676 in loop_count:1
-Warning: Failed to retrieve taxon:gm03677 in loop_count:1
-Warning: Failed to retrieve taxon:gm03678 in loop_count:1
-Warning: Failed to retrieve taxon:msz in loop_count:1
-Warning: Failed to retrieve taxon:bchi in loop_count:1
-Warning: Failed to retrieve taxon:bbgw in loop_count:1
-Warning: Failed to retrieve taxon:bgw in loop_count:1
-Warning: Failed to retrieve taxon:gm04044 in loop_count:1
-Warning: Failed to retrieve taxon:hcc in loop_count:1
-Warning: Failed to retrieve taxon:hcd in loop_count:1
-Warning: Failed to retrieve taxon:srg in loop_count:1
-Warning: Failed to retrieve taxon:tmg in loop_count:1
-Warning: Failed to retrieve taxon:gm03996 in loop_count:1
-Warning: Failed to retrieve taxon:gm04001 in loop_count:1
-Warning: Failed to retrieve taxon:plb in loop_count:1
-Warning: Failed to retrieve taxon:plc in loop_count:1
-Warning: Failed to retrieve taxon:pli in loop_count:1
-Warning: Failed to retrieve taxon:gm04124 in loop_count:1
-Warning: Failed to retrieve taxon:gm04125 in loop_count:1
-Warning: Failed to retrieve taxon:gm06281 in loop_count:1
-Warning: Failed to retrieve taxon:gm06283 in loop_count:1
-Warning: Failed to retrieve taxon:gm04174 in loop_count:1
-Warning: Failed to retrieve taxon:gm04275 in loop_count:1
-Warning: Failed to retrieve taxon:gm04705 in loop_count:1
-Warning: Failed to retrieve taxon:gm04817 in loop_count:1
-Warning: Failed to retrieve taxon:gm04818 in loop_count:1
-Warning: Failed to retrieve taxon:gm04824 in loop_count:1
-Warning: Failed to retrieve taxon:gm04529 in loop_count:1
-Warning: Failed to retrieve taxon:gm04861 in loop_count:1
-Warning: Failed to retrieve taxon:gm04864 in loop_count:1
-Warning: Failed to retrieve taxon:gm04248 in loop_count:1
-Warning: Failed to retrieve taxon:gm04841 in loop_count:1
-Warning: Failed to retrieve taxon:gm04842 in loop_count:1
-Warning: Failed to retrieve taxon:gm04844 in loop_count:1
-Warning: Failed to retrieve taxon:gm04845 in loop_count:1
-Warning: Failed to retrieve taxon:gm04870 in loop_count:1
-Warning: Failed to retrieve taxon:gm04783 in loop_count:1
-Warning: Failed to retrieve taxon:gm04877 in loop_count:1
-Warning: Failed to retrieve taxon:gm04788 in loop_count:1
-Warning: Failed to retrieve taxon:gm04819 in loop_count:1
-Warning: Failed to retrieve taxon:gm04820 in loop_count:1
-Warning: Failed to retrieve taxon:senb in loop_count:1
-Warning: Failed to retrieve taxon:gm04858 in loop_count:1
-Warning: Failed to retrieve taxon:gm04594 in loop_count:1
-Warning: Failed to retrieve taxon:gm04596 in loop_count:1
-Warning: Failed to retrieve taxon:gm04597 in loop_count:1
-Warning: Failed to retrieve taxon:gm04686 in loop_count:1
-Warning: Failed to retrieve taxon:gm04825 in loop_count:1
-Warning: Failed to retrieve taxon:gm04826 in loop_count:1
-Warning: Failed to retrieve taxon:gm04829 in loop_count:1
-Warning: Failed to retrieve taxon:gm04830 in loop_count:1
-Warning: Failed to retrieve taxon:gm04834 in loop_count:1
-Warning: Failed to retrieve taxon:gm04853 in loop_count:1
-Warning: Failed to retrieve taxon:gm04854 in loop_count:1
-Warning: Failed to retrieve taxon:gm04862 in loop_count:1
-Warning: Failed to retrieve taxon:gm04863 in loop_count:1
-Warning: Failed to retrieve taxon:gm04804 in loop_count:1
-Warning: Failed to retrieve taxon:gm04805 in loop_count:1
-Warning: Failed to retrieve taxon:gm04813 in loop_count:1
-Warning: Failed to retrieve taxon:gm04814 in loop_count:1
-Warning: Failed to retrieve taxon:gm04273 in loop_count:1
-Warning: Failed to retrieve taxon:mib in loop_count:1
-Warning: Failed to retrieve taxon:wba in loop_count:1
-Warning: Failed to retrieve taxon:gm04653 in loop_count:1
-Warning: Failed to retrieve taxon:gm04821 in loop_count:1
-Warning: Failed to retrieve taxon:gm04822 in loop_count:1
-Warning: Failed to retrieve taxon:gm04823 in loop_count:1
-Warning: Failed to retrieve taxon:gm04835 in loop_count:1
-Warning: Failed to retrieve taxon:gm04836 in loop_count:1
-Warning: Failed to retrieve taxon:gm04847 in loop_count:1
-Warning: Failed to retrieve taxon:gm04848 in loop_count:1
-Warning: Failed to retrieve taxon:gm04598 in loop_count:1
-Warning: Failed to retrieve taxon:gm04610 in loop_count:1
-Warning: Failed to retrieve taxon:gm04803 in loop_count:1
-Warning: Failed to retrieve taxon:gm04810 in loop_count:1
-Warning: Failed to retrieve taxon:gm04811 in loop_count:1
-Warning: Failed to retrieve taxon:pcv in loop_count:1
-Warning: Failed to retrieve taxon:mgb in loop_count:1
-Warning: Failed to retrieve taxon:rbu in loop_count:1
-Warning: Failed to retrieve taxon:gm04833 in loop_count:1
-Warning: Failed to retrieve taxon:gm04839 in loop_count:1
-Warning: Failed to retrieve taxon:gm04840 in loop_count:1
-Warning: Failed to retrieve taxon:gm04850 in loop_count:1
-Warning: Failed to retrieve taxon:gm04851 in loop_count:1
-Warning: Failed to retrieve taxon:gm04855 in loop_count:1
-Warning: Failed to retrieve taxon:gm04865 in loop_count:1
-Warning: Failed to retrieve taxon:gm04866 in loop_count:1
-Warning: Failed to retrieve taxon:gm04786 in loop_count:1
-Warning: Failed to retrieve taxon:gm04787 in loop_count:1
-Warning: Failed to retrieve taxon:gm04807 in loop_count:1
-Warning: Failed to retrieve taxon:gm04808 in loop_count:1
-Warning: Failed to retrieve taxon:gm04809 in loop_count:1
-Warning: Failed to retrieve taxon:gm04815 in loop_count:1
-Warning: Failed to retrieve taxon:gm04816 in loop_count:1
-Warning: Failed to retrieve taxon:gm04837 in loop_count:1
-Warning: Failed to retrieve taxon:gm04838 in loop_count:1
-Warning: Failed to retrieve taxon:gm04843 in loop_count:1
-Warning: Failed to retrieve taxon:gm04856 in loop_count:1
-Warning: Failed to retrieve taxon:gm04857 in loop_count:1
-Warning: Failed to retrieve taxon:gm04812 in loop_count:1
-Warning: Failed to retrieve taxon:gm06263 in loop_count:1
-Warning: Failed to retrieve taxon:gm06264 in loop_count:1
-Warning: Failed to retrieve taxon:gm06286 in loop_count:1
-Warning: Failed to retrieve taxon:gm06287 in loop_count:1
-Warning: Failed to retrieve taxon:gm06288 in loop_count:1
-Warning: Failed to retrieve taxon:gm06292 in loop_count:1
-Warning: Failed to retrieve taxon:gm06293 in loop_count:1
-Warning: Failed to retrieve taxon:gm06315 in loop_count:1
-Warning: Failed to retrieve taxon:cgw in loop_count:1
-Warning: Failed to retrieve taxon:pwo in loop_count:1
-Warning: Failed to retrieve taxon:gm04661 in loop_count:1
-Warning: Failed to retrieve taxon:gm04859 in loop_count:1
-Warning: Failed to retrieve taxon:gm04860 in loop_count:1
-Warning: Failed to retrieve taxon:gm04874 in loop_count:1
-Warning: Failed to retrieve taxon:gm04798 in loop_count:1
-Warning: Failed to retrieve taxon:gm04799 in loop_count:1
-Warning: Failed to retrieve taxon:gm04802 in loop_count:1
-Warning: Failed to retrieve taxon:gm05041 in loop_count:1
-Warning: Failed to retrieve taxon:gm04827 in loop_count:1
-Warning: Failed to retrieve taxon:gm04828 in loop_count:1
-Warning: Failed to retrieve taxon:gm04831 in loop_count:1
-Warning: Failed to retrieve taxon:gm04832 in loop_count:1
-Warning: Failed to retrieve taxon:gm04849 in loop_count:1
-Warning: Failed to retrieve taxon:gm04587 in loop_count:1
-Warning: Failed to retrieve taxon:gm04871 in loop_count:1
-Warning: Failed to retrieve taxon:gm04872 in loop_count:1
-Warning: Failed to retrieve taxon:gm04875 in loop_count:1
-Warning: Failed to retrieve taxon:gm04876 in loop_count:1
-Warning: Failed to retrieve taxon:cum in loop_count:1
-Warning: Failed to retrieve taxon:gm06267 in loop_count:1
-Warning: Failed to retrieve taxon:gm06365 in loop_count:1
-Warning: Failed to retrieve taxon:gm06366 in loop_count:1
-Warning: Failed to retrieve taxon:gm06368 in loop_count:1
-Warning: Failed to retrieve taxon:gm06369 in loop_count:1
-Warning: Failed to retrieve taxon:gm06376 in loop_count:1
-Warning: Failed to retrieve taxon:gm06377 in loop_count:1
-Warning: Failed to retrieve taxon:gm06403 in loop_count:1
-Warning: Failed to retrieve taxon:gm04846 in loop_count:1
-Warning: Failed to retrieve taxon:gm04852 in loop_count:1
-Warning: Failed to retrieve taxon:gm04867 in loop_count:1
-Warning: Failed to retrieve taxon:gm04868 in loop_count:1
-Warning: Failed to retrieve taxon:gm04869 in loop_count:1
-Warning: Failed to retrieve taxon:gm04873 in loop_count:1
-Warning: Failed to retrieve taxon:gm04789 in loop_count:1
-Warning: Failed to retrieve taxon:gm04790 in loop_count:1
-Warning: Failed to retrieve taxon:gm04791 in loop_count:1
-Warning: Failed to retrieve taxon:gm06297 in loop_count:1
-Warning: Failed to retrieve taxon:gm06299 in loop_count:1
-Warning: Failed to retrieve taxon:gm04792 in loop_count:1
-Warning: Failed to retrieve taxon:gm04793 in loop_count:1
-Warning: Failed to retrieve taxon:gm04794 in loop_count:1
-Warning: Failed to retrieve taxon:gm04795 in loop_count:1
-Warning: Failed to retrieve taxon:gm04796 in loop_count:1
-Warning: Failed to retrieve taxon:gm04797 in loop_count:1
-Warning: Failed to retrieve taxon:gm05497 in loop_count:1
-Warning: Failed to retrieve taxon:pspg in loop_count:1
-Warning: Failed to retrieve taxon:gm06477 in loop_count:1
-Warning: Failed to retrieve taxon:gm04800 in loop_count:1
-Warning: Failed to retrieve taxon:gm04801 in loop_count:1
-Warning: Failed to retrieve taxon:gm04806 in loop_count:1
-Warning: Failed to retrieve taxon:gm06296 in loop_count:1
-Warning: Failed to retrieve taxon:prf in loop_count:1
-Warning: Failed to retrieve taxon:gm06341 in loop_count:1
-Warning: Failed to retrieve taxon:gm06342 in loop_count:1
-Warning: Failed to retrieve taxon:gm06304 in loop_count:1
-Warning: Failed to retrieve taxon:gm06323 in loop_count:1
-Warning: Failed to retrieve taxon:gm06325 in loop_count:1
-Warning: Failed to retrieve taxon:anm in loop_count:1
-Warning: Failed to retrieve taxon:gm06260 in loop_count:1
-Warning: Failed to retrieve taxon:gm06261 in loop_count:1
-Warning: Failed to retrieve taxon:gm06262 in loop_count:1
-Warning: Failed to retrieve taxon:gm06269 in loop_count:1
-Warning: Failed to retrieve taxon:gm06336 in loop_count:1
-Warning: Failed to retrieve taxon:gm06373 in loop_count:1
-Warning: Failed to retrieve taxon:gm06276 in loop_count:1
-Warning: Failed to retrieve taxon:gm06319 in loop_count:1
-Warning: Failed to retrieve taxon:gm06338 in loop_count:1
-Warning: Failed to retrieve taxon:gm06280 in loop_count:1
-Warning: Failed to retrieve taxon:gm06363 in loop_count:1
-Warning: Failed to retrieve taxon:gm06364 in loop_count:1
-Warning: Failed to retrieve taxon:gm06440 in loop_count:1
-Warning: Failed to retrieve taxon:gm06441 in loop_count:1
-Warning: Failed to retrieve taxon:gm06347 in loop_count:1
-Warning: Failed to retrieve taxon:gao in loop_count:1
-Warning: Failed to retrieve taxon:thx in loop_count:1
-Warning: Failed to retrieve taxon:cop in loop_count:1
-Warning: Failed to retrieve taxon:abd in loop_count:1
-Warning: Failed to retrieve taxon:mtg in loop_count:1
-Warning: Failed to retrieve taxon:mti in loop_count:1
-# Success: output/tsv/mbgd_gene-uniprot.tsv is updated
-> 2024-10-18T22:08:10 mbgd_gene-uniprot
+# Error: output/tsv/mbgd_gene-uniprot.tsv new file size per old 0 / 4017692184 = 0.0 < 0.5
+# Error: Failed to create output/tsv/mbgd_gene-uniprot.tsv or created file was empty
+# Failure: output/tsv/mbgd_gene-uniprot.tsv is not updated
+> 2024-10-25T21:05:34 mbgd_gene-uniprot
Rule for TSV (output/tsv/mbgd_gene-uniprot.tsv)
------------------------------
Investigating output/tsv/mbgd_gene-uniprot.tsv
class: Rake::FileTask
-task needed: false
+task needed: true
timestamp: 2024-10-18 22:08:10 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for mbgd_organism-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mbgd_organism-taxonomy.tsv is newer than config/mbgd_organism-taxonomy/config.yaml
# File output/tsv/mbgd_organism-taxonomy.tsv has no timestamp file
-# File output/tsv/mbgd_organism-taxonomy.tsv is created 11.88505551029 days ago (will be updated when >5 days)
+# File output/tsv/mbgd_organism-taxonomy.tsv is created 6.956523374853727 days ago (will be updated when >5 days)
## Update config/mbgd_organism-taxonomy/config.yaml => output/tsv/mbgd_organism-taxonomy.tsv
-< 2024-10-18T22:08:10 mbgd_organism-taxonomy
+< 2024-10-25T21:05:34 mbgd_organism-taxonomy
togoid-config config/mbgd_organism-taxonomy update
-# Success: output/tsv/mbgd_organism-taxonomy.tsv is updated
-> 2024-10-18T22:08:10 mbgd_organism-taxonomy
+# Error: output/tsv/mbgd_organism-taxonomy.tsv new file size per old 0 / 81445 = 0.0 < 0.5
+# Error: Failed to create output/tsv/mbgd_organism-taxonomy.tsv or created file was empty
+# Failure: output/tsv/mbgd_organism-taxonomy.tsv is not updated
+> 2024-10-25T21:05:37 mbgd_organism-taxonomy
Rule for TSV (output/tsv/mbgd_organism-taxonomy.tsv)
------------------------------
Investigating output/tsv/mbgd_organism-taxonomy.tsv
class: Rake::FileTask
-task needed: false
+task needed: true
timestamp: 2024-10-18 22:08:10 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for medgen-hp_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/medgen-hp_phenotype.tsv is newer than config/medgen-hp_phenotype/config.yaml
# File output/tsv/medgen-hp_phenotype.tsv has no timestamp file
-# File output/tsv/medgen-hp_phenotype.tsv is created 11.885053671972441 days ago (will be updated when >5 days)
+# File output/tsv/medgen-hp_phenotype.tsv is created 6.956549762915092 days ago (will be updated when >5 days)
## Update config/medgen-hp_phenotype/config.yaml => output/tsv/medgen-hp_phenotype.tsv
-< 2024-10-18T22:08:10 medgen-hp_phenotype
+< 2024-10-25T21:05:37 medgen-hp_phenotype
togoid-config config/medgen-hp_phenotype update
# Success: output/tsv/medgen-hp_phenotype.tsv is updated
-> 2024-10-18T22:08:11 medgen-hp_phenotype
+> 2024-10-25T21:05:37 medgen-hp_phenotype
Rule for TSV (output/tsv/medgen-hp_phenotype.tsv)
------------------------------
Investigating output/tsv/medgen-hp_phenotype.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:08:11 +0900
+timestamp: 2024-10-25 21:05:37 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for medgen-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/medgen-mesh.tsv is newer than config/medgen-mesh/config.yaml
# File output/tsv/medgen-mesh.tsv has no timestamp file
-# File output/tsv/medgen-mesh.tsv is created 11.885055427260047 days ago (will be updated when >5 days)
+# File output/tsv/medgen-mesh.tsv is created 6.95655014525022 days ago (will be updated when >5 days)
## Update config/medgen-mesh/config.yaml => output/tsv/medgen-mesh.tsv
-< 2024-10-18T22:08:11 medgen-mesh
+< 2024-10-25T21:05:37 medgen-mesh
togoid-config config/medgen-mesh update
# Success: output/tsv/medgen-mesh.tsv is updated
-> 2024-10-18T22:08:11 medgen-mesh
+> 2024-10-25T21:05:37 medgen-mesh
Rule for TSV (output/tsv/medgen-mesh.tsv)
------------------------------
Investigating output/tsv/medgen-mesh.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:08:11 +0900
+timestamp: 2024-10-25 21:05:37 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for medgen-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/medgen-mondo.tsv is newer than config/medgen-mondo/config.yaml
# File output/tsv/medgen-mondo.tsv has no timestamp file
-# File output/tsv/medgen-mondo.tsv is created 11.885054833116747 days ago (will be updated when >5 days)
+# File output/tsv/medgen-mondo.tsv is created 6.956550151528402 days ago (will be updated when >5 days)
## Update config/medgen-mondo/config.yaml => output/tsv/medgen-mondo.tsv
-< 2024-10-18T22:08:11 medgen-mondo
+< 2024-10-25T21:05:37 medgen-mondo
togoid-config config/medgen-mondo update
# Success: output/tsv/medgen-mondo.tsv is updated
-> 2024-10-18T22:08:12 medgen-mondo
+> 2024-10-25T21:05:38 medgen-mondo
Rule for TSV (output/tsv/medgen-mondo.tsv)
------------------------------
Investigating output/tsv/medgen-mondo.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:08:12 +0900
+timestamp: 2024-10-25 21:05:38 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for medgen-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/medgen-ncbigene.tsv is newer than config/medgen-ncbigene/config.yaml
# File output/tsv/medgen-ncbigene.tsv has no timestamp file
-# File output/tsv/medgen-ncbigene.tsv is created 11.88505515654751 days ago (will be updated when >5 days)
+# File output/tsv/medgen-ncbigene.tsv is created 6.956551422335765 days ago (will be updated when >5 days)
## Update config/medgen-ncbigene/config.yaml => output/tsv/medgen-ncbigene.tsv
-< 2024-10-18T22:08:12 medgen-ncbigene
+< 2024-10-25T21:05:38 medgen-ncbigene
togoid-config config/medgen-ncbigene update
# Success: output/tsv/medgen-ncbigene.tsv is updated
-> 2024-10-18T22:08:12 medgen-ncbigene
+> 2024-10-25T21:05:38 medgen-ncbigene
Rule for TSV (output/tsv/medgen-ncbigene.tsv)
------------------------------
Investigating output/tsv/medgen-ncbigene.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:08:12 +0900
+timestamp: 2024-10-25 21:05:38 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for medgen-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/medgen-omim_phenotype.tsv is newer than config/medgen-omim_phenotype/config.yaml
# File output/tsv/medgen-omim_phenotype.tsv has no timestamp file
-# File output/tsv/medgen-omim_phenotype.tsv is created 11.885055395104017 days ago (will be updated when >5 days)
+# File output/tsv/medgen-omim_phenotype.tsv is created 6.956550987613843 days ago (will be updated when >5 days)
## Update config/medgen-omim_phenotype/config.yaml => output/tsv/medgen-omim_phenotype.tsv
-< 2024-10-18T22:08:12 medgen-omim_phenotype
+< 2024-10-25T21:05:38 medgen-omim_phenotype
togoid-config config/medgen-omim_phenotype update
# Success: output/tsv/medgen-omim_phenotype.tsv is updated
-> 2024-10-18T22:08:12 medgen-omim_phenotype
+> 2024-10-25T21:05:39 medgen-omim_phenotype
Rule for TSV (output/tsv/medgen-omim_phenotype.tsv)
------------------------------
Investigating output/tsv/medgen-omim_phenotype.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:08:12 +0900
+timestamp: 2024-10-25 21:05:39 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for medgen-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/medgen-orphanet_phenotype.tsv is newer than config/medgen-orphanet_phenotype/config.yaml
# File output/tsv/medgen-orphanet_phenotype.tsv has no timestamp file
-# File output/tsv/medgen-orphanet_phenotype.tsv is created 11.885055628632234 days ago (will be updated when >5 days)
+# File output/tsv/medgen-orphanet_phenotype.tsv is created 6.956551090453808 days ago (will be updated when >5 days)
## Update config/medgen-orphanet_phenotype/config.yaml => output/tsv/medgen-orphanet_phenotype.tsv
-< 2024-10-18T22:08:12 medgen-orphanet_phenotype
+< 2024-10-25T21:05:39 medgen-orphanet_phenotype
togoid-config config/medgen-orphanet_phenotype update
# Success: output/tsv/medgen-orphanet_phenotype.tsv is updated
-> 2024-10-18T22:08:13 medgen-orphanet_phenotype
+> 2024-10-25T21:05:39 medgen-orphanet_phenotype
Rule for TSV (output/tsv/medgen-orphanet_phenotype.tsv)
------------------------------
Investigating output/tsv/medgen-orphanet_phenotype.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:08:13 +0900
+timestamp: 2024-10-25 21:05:39 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for mgi_gene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mgi_gene-ensembl_gene.tsv is newer than config/mgi_gene-ensembl_gene/config.yaml
# File output/tsv/mgi_gene-ensembl_gene.tsv is older than input/mgi_gene/download.lock
## Update config/mgi_gene-ensembl_gene/config.yaml => output/tsv/mgi_gene-ensembl_gene.tsv
-< 2024-10-18T22:08:13 mgi_gene-ensembl_gene
+< 2024-10-25T21:05:39 mgi_gene-ensembl_gene
togoid-config config/mgi_gene-ensembl_gene update
# Success: output/tsv/mgi_gene-ensembl_gene.tsv is updated
-> 2024-10-18T22:08:13 mgi_gene-ensembl_gene
+> 2024-10-25T21:05:40 mgi_gene-ensembl_gene
Rule for TSV (output/tsv/mgi_gene-ensembl_gene.tsv)
------------------------------
Investigating output/tsv/mgi_gene-ensembl_gene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:08:13 +0900
+timestamp: 2024-10-25 21:05:40 +0900
pre-requisites:
--output/tsv/ ()
---prepare:mgi_gene (2024-10-18 22:08:13 +0900)
-latest-prerequisite time: 2024-10-18 22:08:13 +0900
+--prepare:mgi_gene (2024-10-25 21:05:40 +0900)
+latest-prerequisite time: 2024-10-25 21:05:40 +0900
................................
### Update TSV for mgi_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mgi_gene-hgnc.tsv is newer than config/mgi_gene-hgnc/config.yaml
# File output/tsv/mgi_gene-hgnc.tsv is older than input/mgi_gene/download.lock
## Update config/mgi_gene-hgnc/config.yaml => output/tsv/mgi_gene-hgnc.tsv
-< 2024-10-18T22:08:13 mgi_gene-hgnc
+< 2024-10-25T21:05:40 mgi_gene-hgnc
togoid-config config/mgi_gene-hgnc update
# Success: output/tsv/mgi_gene-hgnc.tsv is updated
-> 2024-10-18T22:08:14 mgi_gene-hgnc
+> 2024-10-25T21:05:40 mgi_gene-hgnc
Rule for TSV (output/tsv/mgi_gene-hgnc.tsv)
------------------------------
Investigating output/tsv/mgi_gene-hgnc.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:08:14 +0900
+timestamp: 2024-10-25 21:05:40 +0900
pre-requisites:
--output/tsv/ ()
---prepare:mgi_gene (2024-10-18 22:08:14 +0900)
-latest-prerequisite time: 2024-10-18 22:08:14 +0900
+--prepare:mgi_gene (2024-10-25 21:05:40 +0900)
+latest-prerequisite time: 2024-10-25 21:05:40 +0900
................................
### Update TSV for mgi_gene-mgi_allele if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mgi_gene-mgi_allele.tsv is newer than config/mgi_gene-mgi_allele/config.yaml
# File output/tsv/mgi_gene-mgi_allele.tsv is older than input/mgi_gene/download.lock
## Update config/mgi_gene-mgi_allele/config.yaml => output/tsv/mgi_gene-mgi_allele.tsv
-< 2024-10-18T22:08:14 mgi_gene-mgi_allele
+< 2024-10-25T21:05:40 mgi_gene-mgi_allele
togoid-config config/mgi_gene-mgi_allele update
# Success: output/tsv/mgi_gene-mgi_allele.tsv is updated
-> 2024-10-18T22:08:15 mgi_gene-mgi_allele
+> 2024-10-25T21:05:42 mgi_gene-mgi_allele
Rule for TSV (output/tsv/mgi_gene-mgi_allele.tsv)
------------------------------
Investigating output/tsv/mgi_gene-mgi_allele.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:08:15 +0900
+timestamp: 2024-10-25 21:05:42 +0900
pre-requisites:
--output/tsv/ ()
---prepare:mgi_gene (2024-10-18 22:08:15 +0900)
-latest-prerequisite time: 2024-10-18 22:08:15 +0900
+--prepare:mgi_gene (2024-10-25 21:05:42 +0900)
+latest-prerequisite time: 2024-10-25 21:05:42 +0900
................................
### Update TSV for mgi_gene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mgi_gene-ncbigene.tsv is newer than config/mgi_gene-ncbigene/config.yaml
# File output/tsv/mgi_gene-ncbigene.tsv is older than input/mgi_gene/download.lock
## Update config/mgi_gene-ncbigene/config.yaml => output/tsv/mgi_gene-ncbigene.tsv
-< 2024-10-18T22:08:15 mgi_gene-ncbigene
+< 2024-10-25T21:05:42 mgi_gene-ncbigene
togoid-config config/mgi_gene-ncbigene update
# Success: output/tsv/mgi_gene-ncbigene.tsv is updated
-> 2024-10-18T22:08:16 mgi_gene-ncbigene
+> 2024-10-25T21:05:42 mgi_gene-ncbigene
Rule for TSV (output/tsv/mgi_gene-ncbigene.tsv)
------------------------------
Investigating output/tsv/mgi_gene-ncbigene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:08:16 +0900
+timestamp: 2024-10-25 21:05:42 +0900
pre-requisites:
--output/tsv/ ()
---prepare:mgi_gene (2024-10-18 22:08:16 +0900)
-latest-prerequisite time: 2024-10-18 22:08:16 +0900
+--prepare:mgi_gene (2024-10-25 21:05:42 +0900)
+latest-prerequisite time: 2024-10-25 21:05:42 +0900
................................
### Update TSV for mgi_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mgi_gene-uniprot.tsv is newer than config/mgi_gene-uniprot/config.yaml
# File output/tsv/mgi_gene-uniprot.tsv is older than input/mgi_gene/download.lock
## Update config/mgi_gene-uniprot/config.yaml => output/tsv/mgi_gene-uniprot.tsv
-< 2024-10-18T22:08:16 mgi_gene-uniprot
+< 2024-10-25T21:05:42 mgi_gene-uniprot
togoid-config config/mgi_gene-uniprot update
# Success: output/tsv/mgi_gene-uniprot.tsv is updated
-> 2024-10-18T22:08:16 mgi_gene-uniprot
+> 2024-10-25T21:05:43 mgi_gene-uniprot
Rule for TSV (output/tsv/mgi_gene-uniprot.tsv)
------------------------------
Investigating output/tsv/mgi_gene-uniprot.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:08:16 +0900
+timestamp: 2024-10-25 21:05:43 +0900
pre-requisites:
--output/tsv/ ()
---prepare:mgi_gene (2024-10-18 22:08:16 +0900)
-latest-prerequisite time: 2024-10-18 22:08:16 +0900
+--prepare:mgi_gene (2024-10-25 21:05:43 +0900)
+latest-prerequisite time: 2024-10-25 21:05:43 +0900
................................
### Update TSV for mgi_genotype-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mgi_genotype-doid.tsv is newer than config/mgi_genotype-doid/config.yaml
# File output/tsv/mgi_genotype-doid.tsv is older than input/mgi_genotype/download.lock
## Update config/mgi_genotype-doid/config.yaml => output/tsv/mgi_genotype-doid.tsv
-< 2024-10-18T22:08:16 mgi_genotype-doid
+< 2024-10-25T21:05:43 mgi_genotype-doid
togoid-config config/mgi_genotype-doid update
# Success: output/tsv/mgi_genotype-doid.tsv is updated
-> 2024-10-18T22:08:19 mgi_genotype-doid
+> 2024-10-25T21:05:44 mgi_genotype-doid
Rule for TSV (output/tsv/mgi_genotype-doid.tsv)
------------------------------
Investigating output/tsv/mgi_genotype-doid.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:08:19 +0900
+timestamp: 2024-10-25 21:05:44 +0900
pre-requisites:
--output/tsv/ ()
---prepare:mgi_genotype (2024-10-18 22:08:19 +0900)
-latest-prerequisite time: 2024-10-18 22:08:19 +0900
+--prepare:mgi_genotype (2024-10-25 21:05:44 +0900)
+latest-prerequisite time: 2024-10-25 21:05:44 +0900
................................
### Update TSV for mgi_genotype-mgi_allele if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mgi_genotype-mgi_allele.tsv is newer than config/mgi_genotype-mgi_allele/config.yaml
# File output/tsv/mgi_genotype-mgi_allele.tsv is older than input/mgi_genotype/download.lock
## Update config/mgi_genotype-mgi_allele/config.yaml => output/tsv/mgi_genotype-mgi_allele.tsv
-< 2024-10-18T22:08:19 mgi_genotype-mgi_allele
+< 2024-10-25T21:05:44 mgi_genotype-mgi_allele
togoid-config config/mgi_genotype-mgi_allele update
# Success: output/tsv/mgi_genotype-mgi_allele.tsv is updated
-> 2024-10-18T22:08:20 mgi_genotype-mgi_allele
+> 2024-10-25T21:05:46 mgi_genotype-mgi_allele
Rule for TSV (output/tsv/mgi_genotype-mgi_allele.tsv)
------------------------------
Investigating output/tsv/mgi_genotype-mgi_allele.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:08:20 +0900
+timestamp: 2024-10-25 21:05:46 +0900
pre-requisites:
--output/tsv/ ()
---prepare:mgi_genotype (2024-10-18 22:08:20 +0900)
-latest-prerequisite time: 2024-10-18 22:08:20 +0900
+--prepare:mgi_genotype (2024-10-25 21:05:46 +0900)
+latest-prerequisite time: 2024-10-25 21:05:46 +0900
................................
### Update TSV for mgi_genotype-mp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mgi_genotype-mp.tsv is newer than config/mgi_genotype-mp/config.yaml
# File output/tsv/mgi_genotype-mp.tsv is older than input/mgi_genotype/download.lock
## Update config/mgi_genotype-mp/config.yaml => output/tsv/mgi_genotype-mp.tsv
-< 2024-10-18T22:08:20 mgi_genotype-mp
+< 2024-10-25T21:05:46 mgi_genotype-mp
togoid-config config/mgi_genotype-mp update
# Success: output/tsv/mgi_genotype-mp.tsv is updated
-> 2024-10-18T22:08:23 mgi_genotype-mp
+> 2024-10-25T21:05:48 mgi_genotype-mp
Rule for TSV (output/tsv/mgi_genotype-mp.tsv)
------------------------------
Investigating output/tsv/mgi_genotype-mp.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:08:23 +0900
+timestamp: 2024-10-25 21:05:48 +0900
pre-requisites:
--output/tsv/ ()
---prepare:mgi_genotype (2024-10-18 22:08:23 +0900)
-latest-prerequisite time: 2024-10-18 22:08:23 +0900
+--prepare:mgi_genotype (2024-10-25 21:05:48 +0900)
+latest-prerequisite time: 2024-10-25 21:05:48 +0900
................................
### Update TSV for mondo-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mondo-doid.tsv is newer than config/mondo-doid/config.yaml
# File output/tsv/mondo-doid.tsv has no timestamp file
-# File output/tsv/mondo-doid.tsv is created 146.29141763384416 days ago (will be updated when >5 days)
+# File output/tsv/mondo-doid.tsv is created 153.24795811472725 days ago (will be updated when >5 days)
## Update config/mondo-doid/config.yaml => output/tsv/mondo-doid.tsv
-< 2024-10-18T22:08:23 mondo-doid
+< 2024-10-25T21:05:48 mondo-doid
togoid-config config/mondo-doid update
# Error: output/tsv/mondo-doid.tsv new file size per old 0 / 155460 = 0.0 < 0.5
# Error: Failed to create output/tsv/mondo-doid.tsv or created file was empty
# Failure: output/tsv/mondo-doid.tsv is not updated
-> 2024-10-18T22:08:23 mondo-doid
+> 2024-10-25T21:05:49 mondo-doid
Rule for TSV (output/tsv/mondo-doid.tsv)
------------------------------
Investigating output/tsv/mondo-doid.tsv
@@ -3179,21 +2896,21 @@ task needed: true
timestamp: 2024-05-25 15:08:45 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for mondo-hp_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mondo-hp_phenotype.tsv is newer than config/mondo-hp_phenotype/config.yaml
# File output/tsv/mondo-hp_phenotype.tsv has no timestamp file
-# File output/tsv/mondo-hp_phenotype.tsv is created 146.2914164621836 days ago (will be updated when >5 days)
+# File output/tsv/mondo-hp_phenotype.tsv is created 153.24795809588434 days ago (will be updated when >5 days)
## Update config/mondo-hp_phenotype/config.yaml => output/tsv/mondo-hp_phenotype.tsv
-< 2024-10-18T22:08:23 mondo-hp_phenotype
+< 2024-10-25T21:05:49 mondo-hp_phenotype
togoid-config config/mondo-hp_phenotype update
# Error: output/tsv/mondo-hp_phenotype.tsv new file size per old 0 / 9184 = 0.0 < 0.5
# Error: Failed to create output/tsv/mondo-hp_phenotype.tsv or created file was empty
# Failure: output/tsv/mondo-hp_phenotype.tsv is not updated
-> 2024-10-18T22:08:24 mondo-hp_phenotype
+> 2024-10-25T21:05:49 mondo-hp_phenotype
Rule for TSV (output/tsv/mondo-hp_phenotype.tsv)
------------------------------
Investigating output/tsv/mondo-hp_phenotype.tsv
@@ -3202,21 +2919,21 @@ task needed: true
timestamp: 2024-05-25 15:08:45 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for mondo-meddra if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mondo-meddra.tsv is newer than config/mondo-meddra/config.yaml
# File output/tsv/mondo-meddra.tsv has no timestamp file
-# File output/tsv/mondo-meddra.tsv is created 146.2914212964225 days ago (will be updated when >5 days)
+# File output/tsv/mondo-meddra.tsv is created 153.2479628379967 days ago (will be updated when >5 days)
## Update config/mondo-meddra/config.yaml => output/tsv/mondo-meddra.tsv
-< 2024-10-18T22:08:24 mondo-meddra
+< 2024-10-25T21:05:49 mondo-meddra
togoid-config config/mondo-meddra update
# Error: output/tsv/mondo-meddra.tsv new file size per old 0 / 25262 = 0.0 < 0.5
# Error: Failed to create output/tsv/mondo-meddra.tsv or created file was empty
# Failure: output/tsv/mondo-meddra.tsv is not updated
-> 2024-10-18T22:08:25 mondo-meddra
+> 2024-10-25T21:05:50 mondo-meddra
Rule for TSV (output/tsv/mondo-meddra.tsv)
------------------------------
Investigating output/tsv/mondo-meddra.tsv
@@ -3225,21 +2942,21 @@ task needed: true
timestamp: 2024-05-25 15:08:45 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for mondo-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mondo-mesh.tsv is newer than config/mondo-mesh/config.yaml
# File output/tsv/mondo-mesh.tsv has no timestamp file
-# File output/tsv/mondo-mesh.tsv is created 146.29142441259552 days ago (will be updated when >5 days)
+# File output/tsv/mondo-mesh.tsv is created 153.24796162093168 days ago (will be updated when >5 days)
## Update config/mondo-mesh/config.yaml => output/tsv/mondo-mesh.tsv
-< 2024-10-18T22:08:25 mondo-mesh
+< 2024-10-25T21:05:50 mondo-mesh
togoid-config config/mondo-mesh update
# Error: output/tsv/mondo-mesh.tsv new file size per old 0 / 133836 = 0.0 < 0.5
# Error: Failed to create output/tsv/mondo-mesh.tsv or created file was empty
# Failure: output/tsv/mondo-mesh.tsv is not updated
-> 2024-10-18T22:08:25 mondo-mesh
+> 2024-10-25T21:05:50 mondo-mesh
Rule for TSV (output/tsv/mondo-mesh.tsv)
------------------------------
Investigating output/tsv/mondo-mesh.tsv
@@ -3248,21 +2965,21 @@ task needed: true
timestamp: 2024-05-25 15:08:46 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for mondo-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mondo-omim_phenotype.tsv is newer than config/mondo-omim_phenotype/config.yaml
# File output/tsv/mondo-omim_phenotype.tsv has no timestamp file
-# File output/tsv/mondo-omim_phenotype.tsv is created 146.29142497825674 days ago (will be updated when >5 days)
+# File output/tsv/mondo-omim_phenotype.tsv is created 153.24796200352935 days ago (will be updated when >5 days)
## Update config/mondo-omim_phenotype/config.yaml => output/tsv/mondo-omim_phenotype.tsv
-< 2024-10-18T22:08:25 mondo-omim_phenotype
+< 2024-10-25T21:05:50 mondo-omim_phenotype
togoid-config config/mondo-omim_phenotype update
# Error: output/tsv/mondo-omim_phenotype.tsv new file size per old 0 / 145395 = 0.0 < 0.5
# Error: Failed to create output/tsv/mondo-omim_phenotype.tsv or created file was empty
# Failure: output/tsv/mondo-omim_phenotype.tsv is not updated
-> 2024-10-18T22:08:26 mondo-omim_phenotype
+> 2024-10-25T21:05:51 mondo-omim_phenotype
Rule for TSV (output/tsv/mondo-omim_phenotype.tsv)
------------------------------
Investigating output/tsv/mondo-omim_phenotype.tsv
@@ -3271,21 +2988,21 @@ task needed: true
timestamp: 2024-05-25 15:08:46 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for mondo-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/mondo-orphanet_phenotype.tsv is newer than config/mondo-orphanet_phenotype/config.yaml
# File output/tsv/mondo-orphanet_phenotype.tsv has no timestamp file
-# File output/tsv/mondo-orphanet_phenotype.tsv is created 146.29142845961232 days ago (will be updated when >5 days)
+# File output/tsv/mondo-orphanet_phenotype.tsv is created 153.2479617505052 days ago (will be updated when >5 days)
## Update config/mondo-orphanet_phenotype/config.yaml => output/tsv/mondo-orphanet_phenotype.tsv
-< 2024-10-18T22:08:26 mondo-orphanet_phenotype
+< 2024-10-25T21:05:51 mondo-orphanet_phenotype
togoid-config config/mondo-orphanet_phenotype update
# Error: output/tsv/mondo-orphanet_phenotype.tsv new file size per old 0 / 146923 = 0.0 < 0.5
# Error: Failed to create output/tsv/mondo-orphanet_phenotype.tsv or created file was empty
# Failure: output/tsv/mondo-orphanet_phenotype.tsv is not updated
-> 2024-10-18T22:08:27 mondo-orphanet_phenotype
+> 2024-10-25T21:05:51 mondo-orphanet_phenotype
Rule for TSV (output/tsv/mondo-orphanet_phenotype.tsv)
------------------------------
Investigating output/tsv/mondo-orphanet_phenotype.tsv
@@ -3294,450 +3011,450 @@ task needed: true
timestamp: 2024-05-25 15:08:47 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for nando-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/nando-mondo.tsv is newer than config/nando-mondo/config.yaml
# File output/tsv/nando-mondo.tsv has no timestamp file
-# File output/tsv/nando-mondo.tsv is created 11.885036994568715 days ago (will be updated when >5 days)
+# File output/tsv/nando-mondo.tsv is created 6.956528100332627 days ago (will be updated when >5 days)
## Update config/nando-mondo/config.yaml => output/tsv/nando-mondo.tsv
-< 2024-10-18T22:08:27 nando-mondo
+< 2024-10-25T21:05:51 nando-mondo
togoid-config config/nando-mondo update
# Success: output/tsv/nando-mondo.tsv is updated
-> 2024-10-18T22:08:27 nando-mondo
+> 2024-10-25T21:05:51 nando-mondo
Rule for TSV (output/tsv/nando-mondo.tsv)
------------------------------
Investigating output/tsv/nando-mondo.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:08:27 +0900
+timestamp: 2024-10-25 21:05:51 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for ncbigene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-ensembl_gene.tsv is newer than config/ncbigene-ensembl_gene/config.yaml
# File output/tsv/ncbigene-ensembl_gene.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-ensembl_gene/config.yaml => output/tsv/ncbigene-ensembl_gene.tsv
-< 2024-10-18T22:08:27 ncbigene-ensembl_gene
+< 2024-10-25T21:05:51 ncbigene-ensembl_gene
togoid-config config/ncbigene-ensembl_gene update
# Success: output/tsv/ncbigene-ensembl_gene.tsv is updated
-> 2024-10-18T22:09:08 ncbigene-ensembl_gene
+> 2024-10-25T21:06:26 ncbigene-ensembl_gene
Rule for TSV (output/tsv/ncbigene-ensembl_gene.tsv)
------------------------------
Investigating output/tsv/ncbigene-ensembl_gene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:09:08 +0900
+timestamp: 2024-10-25 21:06:26 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:09:08 +0900)
-latest-prerequisite time: 2024-10-18 22:09:08 +0900
+--prepare:ncbigene (2024-10-25 21:06:26 +0900)
+latest-prerequisite time: 2024-10-25 21:06:26 +0900
................................
### Update TSV for ncbigene-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-ensembl_protein.tsv is newer than config/ncbigene-ensembl_protein/config.yaml
# File output/tsv/ncbigene-ensembl_protein.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-ensembl_protein/config.yaml => output/tsv/ncbigene-ensembl_protein.tsv
-< 2024-10-18T22:09:08 ncbigene-ensembl_protein
+< 2024-10-25T21:06:26 ncbigene-ensembl_protein
togoid-config config/ncbigene-ensembl_protein update
# Success: output/tsv/ncbigene-ensembl_protein.tsv is updated
-> 2024-10-18T22:10:18 ncbigene-ensembl_protein
+> 2024-10-25T21:07:37 ncbigene-ensembl_protein
Rule for TSV (output/tsv/ncbigene-ensembl_protein.tsv)
------------------------------
Investigating output/tsv/ncbigene-ensembl_protein.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:10:18 +0900
+timestamp: 2024-10-25 21:07:37 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:10:18 +0900)
-latest-prerequisite time: 2024-10-18 22:10:18 +0900
+--prepare:ncbigene (2024-10-25 21:07:37 +0900)
+latest-prerequisite time: 2024-10-25 21:07:37 +0900
................................
### Update TSV for ncbigene-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-ensembl_transcript.tsv is newer than config/ncbigene-ensembl_transcript/config.yaml
# File output/tsv/ncbigene-ensembl_transcript.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-ensembl_transcript/config.yaml => output/tsv/ncbigene-ensembl_transcript.tsv
-< 2024-10-18T22:10:18 ncbigene-ensembl_transcript
+< 2024-10-25T21:07:37 ncbigene-ensembl_transcript
togoid-config config/ncbigene-ensembl_transcript update
# Success: output/tsv/ncbigene-ensembl_transcript.tsv is updated
-> 2024-10-18T22:11:32 ncbigene-ensembl_transcript
+> 2024-10-25T21:08:43 ncbigene-ensembl_transcript
Rule for TSV (output/tsv/ncbigene-ensembl_transcript.tsv)
------------------------------
Investigating output/tsv/ncbigene-ensembl_transcript.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:11:32 +0900
+timestamp: 2024-10-25 21:08:43 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:11:32 +0900)
-latest-prerequisite time: 2024-10-18 22:11:32 +0900
+--prepare:ncbigene (2024-10-25 21:08:43 +0900)
+latest-prerequisite time: 2024-10-25 21:08:43 +0900
................................
### Update TSV for ncbigene-flybase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-flybase_gene.tsv is newer than config/ncbigene-flybase_gene/config.yaml
# File output/tsv/ncbigene-flybase_gene.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-flybase_gene/config.yaml => output/tsv/ncbigene-flybase_gene.tsv
-< 2024-10-18T22:11:32 ncbigene-flybase_gene
+< 2024-10-25T21:08:43 ncbigene-flybase_gene
togoid-config config/ncbigene-flybase_gene update
# Success: output/tsv/ncbigene-flybase_gene.tsv is updated
-> 2024-10-18T22:13:04 ncbigene-flybase_gene
+> 2024-10-25T21:10:13 ncbigene-flybase_gene
Rule for TSV (output/tsv/ncbigene-flybase_gene.tsv)
------------------------------
Investigating output/tsv/ncbigene-flybase_gene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:13:04 +0900
+timestamp: 2024-10-25 21:10:13 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:13:04 +0900)
-latest-prerequisite time: 2024-10-18 22:13:04 +0900
+--prepare:ncbigene (2024-10-25 21:10:13 +0900)
+latest-prerequisite time: 2024-10-25 21:10:13 +0900
................................
### Update TSV for ncbigene-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-go.tsv is newer than config/ncbigene-go/config.yaml
# File output/tsv/ncbigene-go.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-go/config.yaml => output/tsv/ncbigene-go.tsv
-< 2024-10-18T22:13:04 ncbigene-go
+< 2024-10-25T21:10:13 ncbigene-go
togoid-config config/ncbigene-go update
# Success: output/tsv/ncbigene-go.tsv is updated
-> 2024-10-18T22:19:20 ncbigene-go
+> 2024-10-25T21:16:38 ncbigene-go
Rule for TSV (output/tsv/ncbigene-go.tsv)
------------------------------
Investigating output/tsv/ncbigene-go.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:19:20 +0900
+timestamp: 2024-10-25 21:16:38 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:19:20 +0900)
-latest-prerequisite time: 2024-10-18 22:19:20 +0900
+--prepare:ncbigene (2024-10-25 21:16:38 +0900)
+latest-prerequisite time: 2024-10-25 21:16:38 +0900
................................
### Update TSV for ncbigene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-hgnc.tsv is newer than config/ncbigene-hgnc/config.yaml
# File output/tsv/ncbigene-hgnc.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-hgnc/config.yaml => output/tsv/ncbigene-hgnc.tsv
-< 2024-10-18T22:19:20 ncbigene-hgnc
+< 2024-10-25T21:16:38 ncbigene-hgnc
togoid-config config/ncbigene-hgnc update
# Success: output/tsv/ncbigene-hgnc.tsv is updated
-> 2024-10-18T22:19:21 ncbigene-hgnc
+> 2024-10-25T21:16:39 ncbigene-hgnc
Rule for TSV (output/tsv/ncbigene-hgnc.tsv)
------------------------------
Investigating output/tsv/ncbigene-hgnc.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:19:21 +0900
+timestamp: 2024-10-25 21:16:39 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:19:21 +0900)
-latest-prerequisite time: 2024-10-18 22:19:21 +0900
+--prepare:ncbigene (2024-10-25 21:16:39 +0900)
+latest-prerequisite time: 2024-10-25 21:16:39 +0900
................................
### Update TSV for ncbigene-mgi_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-mgi_gene.tsv is newer than config/ncbigene-mgi_gene/config.yaml
# File output/tsv/ncbigene-mgi_gene.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-mgi_gene/config.yaml => output/tsv/ncbigene-mgi_gene.tsv
-< 2024-10-18T22:19:21 ncbigene-mgi_gene
+< 2024-10-25T21:16:39 ncbigene-mgi_gene
togoid-config config/ncbigene-mgi_gene update
# Success: output/tsv/ncbigene-mgi_gene.tsv is updated
-> 2024-10-18T22:20:29 ncbigene-mgi_gene
+> 2024-10-25T21:17:47 ncbigene-mgi_gene
Rule for TSV (output/tsv/ncbigene-mgi_gene.tsv)
------------------------------
Investigating output/tsv/ncbigene-mgi_gene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:20:29 +0900
+timestamp: 2024-10-25 21:17:47 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:20:29 +0900)
-latest-prerequisite time: 2024-10-18 22:20:29 +0900
+--prepare:ncbigene (2024-10-25 21:17:47 +0900)
+latest-prerequisite time: 2024-10-25 21:17:47 +0900
................................
### Update TSV for ncbigene-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-mirbase.tsv is newer than config/ncbigene-mirbase/config.yaml
# File output/tsv/ncbigene-mirbase.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-mirbase/config.yaml => output/tsv/ncbigene-mirbase.tsv
-< 2024-10-18T22:20:29 ncbigene-mirbase
+< 2024-10-25T21:17:47 ncbigene-mirbase
togoid-config config/ncbigene-mirbase update
# Success: output/tsv/ncbigene-mirbase.tsv is updated
-> 2024-10-18T22:22:22 ncbigene-mirbase
+> 2024-10-25T21:19:38 ncbigene-mirbase
Rule for TSV (output/tsv/ncbigene-mirbase.tsv)
------------------------------
Investigating output/tsv/ncbigene-mirbase.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:22:22 +0900
+timestamp: 2024-10-25 21:19:38 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:22:22 +0900)
-latest-prerequisite time: 2024-10-18 22:22:22 +0900
+--prepare:ncbigene (2024-10-25 21:19:38 +0900)
+latest-prerequisite time: 2024-10-25 21:19:38 +0900
................................
### Update TSV for ncbigene-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-omim_gene.tsv is newer than config/ncbigene-omim_gene/config.yaml
# File output/tsv/ncbigene-omim_gene.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-omim_gene/config.yaml => output/tsv/ncbigene-omim_gene.tsv
-< 2024-10-18T22:22:22 ncbigene-omim_gene
+< 2024-10-25T21:19:38 ncbigene-omim_gene
togoid-config config/ncbigene-omim_gene update
# Success: output/tsv/ncbigene-omim_gene.tsv is updated
-> 2024-10-18T22:22:23 ncbigene-omim_gene
+> 2024-10-25T21:19:39 ncbigene-omim_gene
Rule for TSV (output/tsv/ncbigene-omim_gene.tsv)
------------------------------
Investigating output/tsv/ncbigene-omim_gene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:22:23 +0900
+timestamp: 2024-10-25 21:19:39 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:22:23 +0900)
-latest-prerequisite time: 2024-10-18 22:22:23 +0900
+--prepare:ncbigene (2024-10-25 21:19:39 +0900)
+latest-prerequisite time: 2024-10-25 21:19:39 +0900
................................
### Update TSV for ncbigene-refseq_genomic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-refseq_genomic.tsv is newer than config/ncbigene-refseq_genomic/config.yaml
# File output/tsv/ncbigene-refseq_genomic.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-refseq_genomic/config.yaml => output/tsv/ncbigene-refseq_genomic.tsv
-< 2024-10-18T22:22:23 ncbigene-refseq_genomic
+< 2024-10-25T21:19:39 ncbigene-refseq_genomic
togoid-config config/ncbigene-refseq_genomic update
# Success: output/tsv/ncbigene-refseq_genomic.tsv is updated
-> 2024-10-18T22:27:11 ncbigene-refseq_genomic
+> 2024-10-25T21:24:17 ncbigene-refseq_genomic
Rule for TSV (output/tsv/ncbigene-refseq_genomic.tsv)
------------------------------
Investigating output/tsv/ncbigene-refseq_genomic.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:27:11 +0900
+timestamp: 2024-10-25 21:24:17 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:27:11 +0900)
-latest-prerequisite time: 2024-10-18 22:27:11 +0900
+--prepare:ncbigene (2024-10-25 21:24:17 +0900)
+latest-prerequisite time: 2024-10-25 21:24:17 +0900
................................
### Update TSV for ncbigene-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-refseq_protein.tsv is newer than config/ncbigene-refseq_protein/config.yaml
# File output/tsv/ncbigene-refseq_protein.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-refseq_protein/config.yaml => output/tsv/ncbigene-refseq_protein.tsv
-< 2024-10-18T22:27:11 ncbigene-refseq_protein
+< 2024-10-25T21:24:17 ncbigene-refseq_protein
togoid-config config/ncbigene-refseq_protein update
# Success: output/tsv/ncbigene-refseq_protein.tsv is updated
-> 2024-10-18T22:32:02 ncbigene-refseq_protein
+> 2024-10-25T21:29:21 ncbigene-refseq_protein
Rule for TSV (output/tsv/ncbigene-refseq_protein.tsv)
------------------------------
Investigating output/tsv/ncbigene-refseq_protein.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:32:01 +0900
+timestamp: 2024-10-25 21:29:21 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:32:02 +0900)
-latest-prerequisite time: 2024-10-18 22:32:02 +0900
+--prepare:ncbigene (2024-10-25 21:29:21 +0900)
+latest-prerequisite time: 2024-10-25 21:29:21 +0900
................................
### Update TSV for ncbigene-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-refseq_rna.tsv is newer than config/ncbigene-refseq_rna/config.yaml
# File output/tsv/ncbigene-refseq_rna.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-refseq_rna/config.yaml => output/tsv/ncbigene-refseq_rna.tsv
-< 2024-10-18T22:32:02 ncbigene-refseq_rna
+< 2024-10-25T21:29:21 ncbigene-refseq_rna
togoid-config config/ncbigene-refseq_rna update
# Success: output/tsv/ncbigene-refseq_rna.tsv is updated
-> 2024-10-18T22:36:20 ncbigene-refseq_rna
+> 2024-10-25T21:33:20 ncbigene-refseq_rna
Rule for TSV (output/tsv/ncbigene-refseq_rna.tsv)
------------------------------
Investigating output/tsv/ncbigene-refseq_rna.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:36:20 +0900
+timestamp: 2024-10-25 21:33:20 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:36:20 +0900)
-latest-prerequisite time: 2024-10-18 22:36:20 +0900
+--prepare:ncbigene (2024-10-25 21:33:20 +0900)
+latest-prerequisite time: 2024-10-25 21:33:20 +0900
................................
### Update TSV for ncbigene-rgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-rgd.tsv is newer than config/ncbigene-rgd/config.yaml
# File output/tsv/ncbigene-rgd.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-rgd/config.yaml => output/tsv/ncbigene-rgd.tsv
-< 2024-10-18T22:36:20 ncbigene-rgd
+< 2024-10-25T21:33:20 ncbigene-rgd
togoid-config config/ncbigene-rgd update
# Success: output/tsv/ncbigene-rgd.tsv is updated
-> 2024-10-18T22:37:27 ncbigene-rgd
+> 2024-10-25T21:34:27 ncbigene-rgd
Rule for TSV (output/tsv/ncbigene-rgd.tsv)
------------------------------
Investigating output/tsv/ncbigene-rgd.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:37:27 +0900
+timestamp: 2024-10-25 21:34:27 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:37:27 +0900)
-latest-prerequisite time: 2024-10-18 22:37:27 +0900
+--prepare:ncbigene (2024-10-25 21:34:27 +0900)
+latest-prerequisite time: 2024-10-25 21:34:27 +0900
................................
### Update TSV for ncbigene-sgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-sgd.tsv is newer than config/ncbigene-sgd/config.yaml
# File output/tsv/ncbigene-sgd.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-sgd/config.yaml => output/tsv/ncbigene-sgd.tsv
-< 2024-10-18T22:37:27 ncbigene-sgd
+< 2024-10-25T21:34:27 ncbigene-sgd
togoid-config config/ncbigene-sgd update
# Success: output/tsv/ncbigene-sgd.tsv is updated
-> 2024-10-18T22:38:44 ncbigene-sgd
+> 2024-10-25T21:35:46 ncbigene-sgd
Rule for TSV (output/tsv/ncbigene-sgd.tsv)
------------------------------
Investigating output/tsv/ncbigene-sgd.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:38:44 +0900
+timestamp: 2024-10-25 21:35:46 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:38:44 +0900)
-latest-prerequisite time: 2024-10-18 22:38:44 +0900
+--prepare:ncbigene (2024-10-25 21:35:46 +0900)
+latest-prerequisite time: 2024-10-25 21:35:46 +0900
................................
### Update TSV for ncbigene-tair if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-tair.tsv is newer than config/ncbigene-tair/config.yaml
# File output/tsv/ncbigene-tair.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-tair/config.yaml => output/tsv/ncbigene-tair.tsv
-< 2024-10-18T22:38:44 ncbigene-tair
+< 2024-10-25T21:35:46 ncbigene-tair
togoid-config config/ncbigene-tair update
# Success: output/tsv/ncbigene-tair.tsv is updated
-> 2024-10-18T22:40:02 ncbigene-tair
+> 2024-10-25T21:37:03 ncbigene-tair
Rule for TSV (output/tsv/ncbigene-tair.tsv)
------------------------------
Investigating output/tsv/ncbigene-tair.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:40:02 +0900
+timestamp: 2024-10-25 21:37:03 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:40:02 +0900)
-latest-prerequisite time: 2024-10-18 22:40:02 +0900
+--prepare:ncbigene (2024-10-25 21:37:03 +0900)
+latest-prerequisite time: 2024-10-25 21:37:03 +0900
................................
### Update TSV for ncbigene-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-taxonomy.tsv is newer than config/ncbigene-taxonomy/config.yaml
# File output/tsv/ncbigene-taxonomy.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-taxonomy/config.yaml => output/tsv/ncbigene-taxonomy.tsv
-< 2024-10-18T22:40:02 ncbigene-taxonomy
+< 2024-10-25T21:37:03 ncbigene-taxonomy
togoid-config config/ncbigene-taxonomy update
# Success: output/tsv/ncbigene-taxonomy.tsv is updated
-> 2024-10-18T22:40:50 ncbigene-taxonomy
+> 2024-10-25T21:37:53 ncbigene-taxonomy
Rule for TSV (output/tsv/ncbigene-taxonomy.tsv)
------------------------------
Investigating output/tsv/ncbigene-taxonomy.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:40:50 +0900
+timestamp: 2024-10-25 21:37:53 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:40:50 +0900)
-latest-prerequisite time: 2024-10-18 22:40:50 +0900
+--prepare:ncbigene (2024-10-25 21:37:53 +0900)
+latest-prerequisite time: 2024-10-25 21:37:53 +0900
................................
### Update TSV for ncbigene-vgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-vgnc.tsv is newer than config/ncbigene-vgnc/config.yaml
# File output/tsv/ncbigene-vgnc.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-vgnc/config.yaml => output/tsv/ncbigene-vgnc.tsv
-< 2024-10-18T22:40:50 ncbigene-vgnc
+< 2024-10-25T21:37:53 ncbigene-vgnc
togoid-config config/ncbigene-vgnc update
# Success: output/tsv/ncbigene-vgnc.tsv is updated
-> 2024-10-18T22:42:11 ncbigene-vgnc
+> 2024-10-25T21:39:11 ncbigene-vgnc
Rule for TSV (output/tsv/ncbigene-vgnc.tsv)
------------------------------
Investigating output/tsv/ncbigene-vgnc.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:42:11 +0900
+timestamp: 2024-10-25 21:39:11 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:42:11 +0900)
-latest-prerequisite time: 2024-10-18 22:42:11 +0900
+--prepare:ncbigene (2024-10-25 21:39:11 +0900)
+latest-prerequisite time: 2024-10-25 21:39:11 +0900
................................
### Update TSV for ncbigene-wormbase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-wormbase_gene.tsv is newer than config/ncbigene-wormbase_gene/config.yaml
# File output/tsv/ncbigene-wormbase_gene.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-wormbase_gene/config.yaml => output/tsv/ncbigene-wormbase_gene.tsv
-< 2024-10-18T22:42:11 ncbigene-wormbase_gene
+< 2024-10-25T21:39:11 ncbigene-wormbase_gene
togoid-config config/ncbigene-wormbase_gene update
# Success: output/tsv/ncbigene-wormbase_gene.tsv is updated
-> 2024-10-18T22:43:28 ncbigene-wormbase_gene
+> 2024-10-25T21:40:29 ncbigene-wormbase_gene
Rule for TSV (output/tsv/ncbigene-wormbase_gene.tsv)
------------------------------
Investigating output/tsv/ncbigene-wormbase_gene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:43:28 +0900
+timestamp: 2024-10-25 21:40:29 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:43:28 +0900)
-latest-prerequisite time: 2024-10-18 22:43:28 +0900
+--prepare:ncbigene (2024-10-25 21:40:29 +0900)
+latest-prerequisite time: 2024-10-25 21:40:29 +0900
................................
### Update TSV for ncbigene-xenbase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-xenbase_gene.tsv is newer than config/ncbigene-xenbase_gene/config.yaml
# File output/tsv/ncbigene-xenbase_gene.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-xenbase_gene/config.yaml => output/tsv/ncbigene-xenbase_gene.tsv
-< 2024-10-18T22:43:28 ncbigene-xenbase_gene
+< 2024-10-25T21:40:29 ncbigene-xenbase_gene
togoid-config config/ncbigene-xenbase_gene update
# Success: output/tsv/ncbigene-xenbase_gene.tsv is updated
-> 2024-10-18T22:44:45 ncbigene-xenbase_gene
+> 2024-10-25T21:41:48 ncbigene-xenbase_gene
Rule for TSV (output/tsv/ncbigene-xenbase_gene.tsv)
------------------------------
Investigating output/tsv/ncbigene-xenbase_gene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:44:45 +0900
+timestamp: 2024-10-25 21:41:48 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:44:45 +0900)
-latest-prerequisite time: 2024-10-18 22:44:45 +0900
+--prepare:ncbigene (2024-10-25 21:41:48 +0900)
+latest-prerequisite time: 2024-10-25 21:41:48 +0900
................................
### Update TSV for ncbigene-zfin_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncbigene-zfin_gene.tsv is newer than config/ncbigene-zfin_gene/config.yaml
# File output/tsv/ncbigene-zfin_gene.tsv is older than input/ncbigene/download.lock
## Update config/ncbigene-zfin_gene/config.yaml => output/tsv/ncbigene-zfin_gene.tsv
-< 2024-10-18T22:44:45 ncbigene-zfin_gene
+< 2024-10-25T21:41:48 ncbigene-zfin_gene
togoid-config config/ncbigene-zfin_gene update
# Success: output/tsv/ncbigene-zfin_gene.tsv is updated
-> 2024-10-18T22:46:02 ncbigene-zfin_gene
+> 2024-10-25T21:43:06 ncbigene-zfin_gene
Rule for TSV (output/tsv/ncbigene-zfin_gene.tsv)
------------------------------
Investigating output/tsv/ncbigene-zfin_gene.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:46:02 +0900
+timestamp: 2024-10-25 21:43:06 +0900
pre-requisites:
--output/tsv/ ()
---prepare:ncbigene (2024-10-18 22:46:02 +0900)
-latest-prerequisite time: 2024-10-18 22:46:02 +0900
+--prepare:ncbigene (2024-10-25 21:43:06 +0900)
+latest-prerequisite time: 2024-10-25 21:43:06 +0900
................................
### Update TSV for ncit_disease-ncit_tissue if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/ncit_disease-ncit_tissue.tsv is newer than config/ncit_disease-ncit_tissue/config.yaml
# File output/tsv/ncit_disease-ncit_tissue.tsv has no timestamp file
-# File output/tsv/ncit_disease-ncit_tissue.tsv is created 11.884911534781585 days ago (will be updated when >5 days)
+# File output/tsv/ncit_disease-ncit_tissue.tsv is created 6.956265494754619 days ago (will be updated when >5 days)
## Update config/ncit_disease-ncit_tissue/config.yaml => output/tsv/ncit_disease-ncit_tissue.tsv
-< 2024-10-18T22:46:02 ncit_disease-ncit_tissue
+< 2024-10-25T21:43:06 ncit_disease-ncit_tissue
togoid-config config/ncit_disease-ncit_tissue update
# Success: output/tsv/ncit_disease-ncit_tissue.tsv is updated
-> 2024-10-18T22:46:05 ncit_disease-ncit_tissue
+> 2024-10-25T21:43:10 ncit_disease-ncit_tissue
Rule for TSV (output/tsv/ncit_disease-ncit_tissue.tsv)
------------------------------
Investigating output/tsv/ncit_disease-ncit_tissue.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:46:05 +0900
+timestamp: 2024-10-25 21:43:10 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for oma_protein-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -3752,8 +3469,8 @@ task needed: true
timestamp: 2024-09-27 22:31:53 +0900
pre-requisites:
--output/tsv/ ()
---prepare:oma_protein (2024-10-18 22:46:05 +0900)
-latest-prerequisite time: 2024-10-18 22:46:05 +0900
+--prepare:oma_protein (2024-10-25 21:43:10 +0900)
+latest-prerequisite time: 2024-10-25 21:43:10 +0900
................................
### Update TSV for oma_protein-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -3768,8 +3485,8 @@ task needed: true
timestamp: 2024-09-27 22:39:06 +0900
pre-requisites:
--output/tsv/ ()
---prepare:oma_protein (2024-10-18 22:46:05 +0900)
-latest-prerequisite time: 2024-10-18 22:46:05 +0900
+--prepare:oma_protein (2024-10-25 21:43:10 +0900)
+latest-prerequisite time: 2024-10-25 21:43:10 +0900
................................
### Update TSV for oma_protein-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -3784,8 +3501,8 @@ task needed: true
timestamp: 2024-09-27 22:39:32 +0900
pre-requisites:
--output/tsv/ ()
---prepare:oma_protein (2024-10-18 22:46:05 +0900)
-latest-prerequisite time: 2024-10-18 22:46:05 +0900
+--prepare:oma_protein (2024-10-25 21:43:10 +0900)
+latest-prerequisite time: 2024-10-25 21:43:10 +0900
................................
### Update TSV for oma_protein-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -3800,301 +3517,301 @@ task needed: true
timestamp: 2024-09-27 22:39:39 +0900
pre-requisites:
--output/tsv/ ()
---prepare:oma_protein (2024-10-18 22:46:05 +0900)
-latest-prerequisite time: 2024-10-18 22:46:05 +0900
+--prepare:oma_protein (2024-10-25 21:43:10 +0900)
+latest-prerequisite time: 2024-10-25 21:43:10 +0900
................................
### Update TSV for orphanet_gene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/orphanet_gene-ensembl_gene.tsv is newer than config/orphanet_gene-ensembl_gene/config.yaml
# File output/tsv/orphanet_gene-ensembl_gene.tsv has no timestamp file
-# File output/tsv/orphanet_gene-ensembl_gene.tsv is created 11.884937369648611 days ago (will be updated when >5 days)
+# File output/tsv/orphanet_gene-ensembl_gene.tsv is created 6.956305446545198 days ago (will be updated when >5 days)
## Update config/orphanet_gene-ensembl_gene/config.yaml => output/tsv/orphanet_gene-ensembl_gene.tsv
-< 2024-10-18T22:46:05 orphanet_gene-ensembl_gene
+< 2024-10-25T21:43:10 orphanet_gene-ensembl_gene
togoid-config config/orphanet_gene-ensembl_gene update
# Success: output/tsv/orphanet_gene-ensembl_gene.tsv is updated
-> 2024-10-18T22:46:05 orphanet_gene-ensembl_gene
+> 2024-10-25T21:43:10 orphanet_gene-ensembl_gene
Rule for TSV (output/tsv/orphanet_gene-ensembl_gene.tsv)
------------------------------
Investigating output/tsv/orphanet_gene-ensembl_gene.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:46:05 +0900
+timestamp: 2024-10-25 21:43:10 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for orphanet_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/orphanet_gene-hgnc.tsv is newer than config/orphanet_gene-hgnc/config.yaml
# File output/tsv/orphanet_gene-hgnc.tsv has no timestamp file
-# File output/tsv/orphanet_gene-hgnc.tsv is created 11.884936961684156 days ago (will be updated when >5 days)
+# File output/tsv/orphanet_gene-hgnc.tsv is created 6.956307165751412 days ago (will be updated when >5 days)
## Update config/orphanet_gene-hgnc/config.yaml => output/tsv/orphanet_gene-hgnc.tsv
-< 2024-10-18T22:46:05 orphanet_gene-hgnc
+< 2024-10-25T21:43:10 orphanet_gene-hgnc
togoid-config config/orphanet_gene-hgnc update
# Success: output/tsv/orphanet_gene-hgnc.tsv is updated
-> 2024-10-18T22:46:05 orphanet_gene-hgnc
+> 2024-10-25T21:43:11 orphanet_gene-hgnc
Rule for TSV (output/tsv/orphanet_gene-hgnc.tsv)
------------------------------
Investigating output/tsv/orphanet_gene-hgnc.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:46:05 +0900
+timestamp: 2024-10-25 21:43:11 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for orphanet_gene-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/orphanet_gene-omim_gene.tsv is newer than config/orphanet_gene-omim_gene/config.yaml
# File output/tsv/orphanet_gene-omim_gene.tsv has no timestamp file
-# File output/tsv/orphanet_gene-omim_gene.tsv is created 11.884936753937454 days ago (will be updated when >5 days)
+# File output/tsv/orphanet_gene-omim_gene.tsv is created 6.95630702432051 days ago (will be updated when >5 days)
## Update config/orphanet_gene-omim_gene/config.yaml => output/tsv/orphanet_gene-omim_gene.tsv
-< 2024-10-18T22:46:05 orphanet_gene-omim_gene
+< 2024-10-25T21:43:11 orphanet_gene-omim_gene
togoid-config config/orphanet_gene-omim_gene update
# Success: output/tsv/orphanet_gene-omim_gene.tsv is updated
-> 2024-10-18T22:46:06 orphanet_gene-omim_gene
+> 2024-10-25T21:43:11 orphanet_gene-omim_gene
Rule for TSV (output/tsv/orphanet_gene-omim_gene.tsv)
------------------------------
Investigating output/tsv/orphanet_gene-omim_gene.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:46:06 +0900
+timestamp: 2024-10-25 21:43:11 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for orphanet_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/orphanet_gene-uniprot.tsv is newer than config/orphanet_gene-uniprot/config.yaml
# File output/tsv/orphanet_gene-uniprot.tsv has no timestamp file
-# File output/tsv/orphanet_gene-uniprot.tsv is created 11.884936863664212 days ago (will be updated when >5 days)
+# File output/tsv/orphanet_gene-uniprot.tsv is created 6.95630655123147 days ago (will be updated when >5 days)
## Update config/orphanet_gene-uniprot/config.yaml => output/tsv/orphanet_gene-uniprot.tsv
-< 2024-10-18T22:46:06 orphanet_gene-uniprot
+< 2024-10-25T21:43:11 orphanet_gene-uniprot
togoid-config config/orphanet_gene-uniprot update
# Success: output/tsv/orphanet_gene-uniprot.tsv is updated
-> 2024-10-18T22:46:06 orphanet_gene-uniprot
+> 2024-10-25T21:43:11 orphanet_gene-uniprot
Rule for TSV (output/tsv/orphanet_gene-uniprot.tsv)
------------------------------
Investigating output/tsv/orphanet_gene-uniprot.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:46:06 +0900
+timestamp: 2024-10-25 21:43:11 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for orphanet_phenotype-meddra if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/orphanet_phenotype-meddra.tsv is newer than config/orphanet_phenotype-meddra/config.yaml
# File output/tsv/orphanet_phenotype-meddra.tsv has no timestamp file
-# File output/tsv/orphanet_phenotype-meddra.tsv is created 11.88493642700669 days ago (will be updated when >5 days)
+# File output/tsv/orphanet_phenotype-meddra.tsv is created 6.956306739309861 days ago (will be updated when >5 days)
## Update config/orphanet_phenotype-meddra/config.yaml => output/tsv/orphanet_phenotype-meddra.tsv
-< 2024-10-18T22:46:06 orphanet_phenotype-meddra
+< 2024-10-25T21:43:11 orphanet_phenotype-meddra
togoid-config config/orphanet_phenotype-meddra update
# Success: output/tsv/orphanet_phenotype-meddra.tsv is updated
-> 2024-10-18T22:46:07 orphanet_phenotype-meddra
+> 2024-10-25T21:43:12 orphanet_phenotype-meddra
Rule for TSV (output/tsv/orphanet_phenotype-meddra.tsv)
------------------------------
Investigating output/tsv/orphanet_phenotype-meddra.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:46:07 +0900
+timestamp: 2024-10-25 21:43:12 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for orphanet_phenotype-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/orphanet_phenotype-mesh.tsv is newer than config/orphanet_phenotype-mesh/config.yaml
# File output/tsv/orphanet_phenotype-mesh.tsv has no timestamp file
-# File output/tsv/orphanet_phenotype-mesh.tsv is created 11.884935703171516 days ago (will be updated when >5 days)
+# File output/tsv/orphanet_phenotype-mesh.tsv is created 6.95630703841934 days ago (will be updated when >5 days)
## Update config/orphanet_phenotype-mesh/config.yaml => output/tsv/orphanet_phenotype-mesh.tsv
-< 2024-10-18T22:46:07 orphanet_phenotype-mesh
+< 2024-10-25T21:43:12 orphanet_phenotype-mesh
togoid-config config/orphanet_phenotype-mesh update
# Success: output/tsv/orphanet_phenotype-mesh.tsv is updated
-> 2024-10-18T22:46:07 orphanet_phenotype-mesh
+> 2024-10-25T21:43:12 orphanet_phenotype-mesh
Rule for TSV (output/tsv/orphanet_phenotype-mesh.tsv)
------------------------------
Investigating output/tsv/orphanet_phenotype-mesh.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:46:07 +0900
+timestamp: 2024-10-25 21:43:12 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for orphanet_phenotype-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/orphanet_phenotype-omim_phenotype.tsv is newer than config/orphanet_phenotype-omim_phenotype/config.yaml
# File output/tsv/orphanet_phenotype-omim_phenotype.tsv has no timestamp file
-# File output/tsv/orphanet_phenotype-omim_phenotype.tsv is created 11.884935700465011 days ago (will be updated when >5 days)
+# File output/tsv/orphanet_phenotype-omim_phenotype.tsv is created 6.956306710530023 days ago (will be updated when >5 days)
## Update config/orphanet_phenotype-omim_phenotype/config.yaml => output/tsv/orphanet_phenotype-omim_phenotype.tsv
-< 2024-10-18T22:46:07 orphanet_phenotype-omim_phenotype
+< 2024-10-25T21:43:12 orphanet_phenotype-omim_phenotype
togoid-config config/orphanet_phenotype-omim_phenotype update
# Success: output/tsv/orphanet_phenotype-omim_phenotype.tsv is updated
-> 2024-10-18T22:46:07 orphanet_phenotype-omim_phenotype
+> 2024-10-25T21:43:13 orphanet_phenotype-omim_phenotype
Rule for TSV (output/tsv/orphanet_phenotype-omim_phenotype.tsv)
------------------------------
Investigating output/tsv/orphanet_phenotype-omim_phenotype.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:46:07 +0900
+timestamp: 2024-10-25 21:43:13 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for orphanet_phenotype-orphanet_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/orphanet_phenotype-orphanet_gene.tsv is newer than config/orphanet_phenotype-orphanet_gene/config.yaml
# File output/tsv/orphanet_phenotype-orphanet_gene.tsv has no timestamp file
-# File output/tsv/orphanet_phenotype-orphanet_gene.tsv is created 11.884935090051156 days ago (will be updated when >5 days)
+# File output/tsv/orphanet_phenotype-orphanet_gene.tsv is created 6.956307123603843 days ago (will be updated when >5 days)
## Update config/orphanet_phenotype-orphanet_gene/config.yaml => output/tsv/orphanet_phenotype-orphanet_gene.tsv
-< 2024-10-18T22:46:07 orphanet_phenotype-orphanet_gene
+< 2024-10-25T21:43:13 orphanet_phenotype-orphanet_gene
togoid-config config/orphanet_phenotype-orphanet_gene update
# Success: output/tsv/orphanet_phenotype-orphanet_gene.tsv is updated
-> 2024-10-18T22:46:08 orphanet_phenotype-orphanet_gene
+> 2024-10-25T21:43:13 orphanet_phenotype-orphanet_gene
Rule for TSV (output/tsv/orphanet_phenotype-orphanet_gene.tsv)
------------------------------
Investigating output/tsv/orphanet_phenotype-orphanet_gene.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:46:08 +0900
+timestamp: 2024-10-25 21:43:13 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pdb-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pdb-go.tsv is newer than config/pdb-go/config.yaml
# File output/tsv/pdb-go.tsv has no timestamp file
-# File output/tsv/pdb-go.tsv is created 11.884891291464584 days ago (will be updated when >5 days)
+# File output/tsv/pdb-go.tsv is created 6.956265048412719 days ago (will be updated when >5 days)
## Update config/pdb-go/config.yaml => output/tsv/pdb-go.tsv
-< 2024-10-18T22:46:08 pdb-go
+< 2024-10-25T21:43:13 pdb-go
togoid-config config/pdb-go update
# Success: output/tsv/pdb-go.tsv is updated
-> 2024-10-18T22:46:12 pdb-go
+> 2024-10-25T21:43:17 pdb-go
Rule for TSV (output/tsv/pdb-go.tsv)
------------------------------
Investigating output/tsv/pdb-go.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:46:12 +0900
+timestamp: 2024-10-25 21:43:17 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pdb-interpro if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pdb-interpro.tsv is newer than config/pdb-interpro/config.yaml
# File output/tsv/pdb-interpro.tsv has no timestamp file
-# File output/tsv/pdb-interpro.tsv is created 11.884920488302349 days ago (will be updated when >5 days)
+# File output/tsv/pdb-interpro.tsv is created 6.956292228518635 days ago (will be updated when >5 days)
## Update config/pdb-interpro/config.yaml => output/tsv/pdb-interpro.tsv
-< 2024-10-18T22:46:12 pdb-interpro
+< 2024-10-25T21:43:17 pdb-interpro
togoid-config config/pdb-interpro update
# Success: output/tsv/pdb-interpro.tsv is updated
-> 2024-10-18T22:46:13 pdb-interpro
+> 2024-10-25T21:43:18 pdb-interpro
Rule for TSV (output/tsv/pdb-interpro.tsv)
------------------------------
Investigating output/tsv/pdb-interpro.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:46:13 +0900
+timestamp: 2024-10-25 21:43:18 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pdb-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pdb-pdb_ccd.tsv is newer than config/pdb-pdb_ccd/config.yaml
# File output/tsv/pdb-pdb_ccd.tsv has no timestamp file
-# File output/tsv/pdb-pdb_ccd.tsv is created 11.884925517405694 days ago (will be updated when >5 days)
+# File output/tsv/pdb-pdb_ccd.tsv is created 6.956295103098032 days ago (will be updated when >5 days)
## Update config/pdb-pdb_ccd/config.yaml => output/tsv/pdb-pdb_ccd.tsv
-< 2024-10-18T22:46:13 pdb-pdb_ccd
+< 2024-10-25T21:43:18 pdb-pdb_ccd
togoid-config config/pdb-pdb_ccd update
# Success: output/tsv/pdb-pdb_ccd.tsv is updated
-> 2024-10-18T22:46:15 pdb-pdb_ccd
+> 2024-10-25T21:43:20 pdb-pdb_ccd
Rule for TSV (output/tsv/pdb-pdb_ccd.tsv)
------------------------------
Investigating output/tsv/pdb-pdb_ccd.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:46:15 +0900
+timestamp: 2024-10-25 21:43:20 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pdb-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pdb-pfam.tsv is newer than config/pdb-pfam/config.yaml
# File output/tsv/pdb-pfam.tsv has no timestamp file
-# File output/tsv/pdb-pfam.tsv is created 11.884928179428496 days ago (will be updated when >5 days)
+# File output/tsv/pdb-pfam.tsv is created 6.956297996516795 days ago (will be updated when >5 days)
## Update config/pdb-pfam/config.yaml => output/tsv/pdb-pfam.tsv
-< 2024-10-18T22:46:15 pdb-pfam
+< 2024-10-25T21:43:20 pdb-pfam
togoid-config config/pdb-pfam update
# Success: output/tsv/pdb-pfam.tsv is updated
-> 2024-10-18T22:46:15 pdb-pfam
+> 2024-10-25T21:43:21 pdb-pfam
Rule for TSV (output/tsv/pdb-pfam.tsv)
------------------------------
Investigating output/tsv/pdb-pfam.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:46:15 +0900
+timestamp: 2024-10-25 21:43:21 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pdb-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pdb-uniprot.tsv is newer than config/pdb-uniprot/config.yaml
# File output/tsv/pdb-uniprot.tsv has no timestamp file
-# File output/tsv/pdb-uniprot.tsv is created 11.88492815651287 days ago (will be updated when >5 days)
+# File output/tsv/pdb-uniprot.tsv is created 6.9562981897866205 days ago (will be updated when >5 days)
## Update config/pdb-uniprot/config.yaml => output/tsv/pdb-uniprot.tsv
-< 2024-10-18T22:46:15 pdb-uniprot
+< 2024-10-25T21:43:21 pdb-uniprot
togoid-config config/pdb-uniprot update
# Success: output/tsv/pdb-uniprot.tsv is updated
-> 2024-10-18T22:46:16 pdb-uniprot
+> 2024-10-25T21:43:21 pdb-uniprot
Rule for TSV (output/tsv/pdb-uniprot.tsv)
------------------------------
Investigating output/tsv/pdb-uniprot.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:46:16 +0900
+timestamp: 2024-10-25 21:43:21 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pmc-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pmc-pubmed.tsv is newer than config/pmc-pubmed/config.yaml
# File output/tsv/pmc-pubmed.tsv is older than input/pmc/download.lock
## Update config/pmc-pubmed/config.yaml => output/tsv/pmc-pubmed.tsv
-< 2024-10-18T22:46:16 pmc-pubmed
+< 2024-10-25T21:43:21 pmc-pubmed
togoid-config config/pmc-pubmed update
# Success: output/tsv/pmc-pubmed.tsv is updated
-> 2024-10-18T22:51:57 pmc-pubmed
+> 2024-10-25T21:49:26 pmc-pubmed
Rule for TSV (output/tsv/pmc-pubmed.tsv)
------------------------------
Investigating output/tsv/pmc-pubmed.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 22:51:57 +0900
+timestamp: 2024-10-25 21:49:25 +0900
pre-requisites:
--output/tsv/ ()
---prepare:pmc (2024-10-18 22:51:57 +0900)
-latest-prerequisite time: 2024-10-18 22:51:57 +0900
+--prepare:pmc (2024-10-25 21:49:26 +0900)
+latest-prerequisite time: 2024-10-25 21:49:26 +0900
................................
### Update TSV for prosite-prosite_prorule if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -4109,511 +3826,511 @@ task needed: true
timestamp: 2024-10-07 01:37:39 +0900
pre-requisites:
--output/tsv/ ()
---prepare:prosite (2024-10-18 22:51:57 +0900)
-latest-prerequisite time: 2024-10-18 22:51:57 +0900
+--prepare:prosite (2024-10-25 21:49:26 +0900)
+latest-prerequisite time: 2024-10-25 21:49:26 +0900
................................
### Update TSV for pubchem_compound-atc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pubchem_compound-atc.tsv is newer than config/pubchem_compound-atc/config.yaml
# File output/tsv/pubchem_compound-atc.tsv has no timestamp file
-# File output/tsv/pubchem_compound-atc.tsv is created 11.884925941633774 days ago (will be updated when >5 days)
+# File output/tsv/pubchem_compound-atc.tsv is created 6.956574693374664 days ago (will be updated when >5 days)
## Update config/pubchem_compound-atc/config.yaml => output/tsv/pubchem_compound-atc.tsv
-< 2024-10-18T22:51:57 pubchem_compound-atc
+< 2024-10-25T21:49:26 pubchem_compound-atc
togoid-config config/pubchem_compound-atc update
# Success: output/tsv/pubchem_compound-atc.tsv is updated
-> 2024-10-18T22:51:57 pubchem_compound-atc
+> 2024-10-25T21:49:26 pubchem_compound-atc
Rule for TSV (output/tsv/pubchem_compound-atc.tsv)
------------------------------
Investigating output/tsv/pubchem_compound-atc.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:51:57 +0900
+timestamp: 2024-10-25 21:49:26 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pubchem_compound-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pubchem_compound-chebi.tsv is newer than config/pubchem_compound-chebi/config.yaml
# File output/tsv/pubchem_compound-chebi.tsv has no timestamp file
-# File output/tsv/pubchem_compound-chebi.tsv is created 11.884923362686862 days ago (will be updated when >5 days)
+# File output/tsv/pubchem_compound-chebi.tsv is created 6.9565703544529285 days ago (will be updated when >5 days)
## Update config/pubchem_compound-chebi/config.yaml => output/tsv/pubchem_compound-chebi.tsv
-< 2024-10-18T22:51:57 pubchem_compound-chebi
+< 2024-10-25T21:49:26 pubchem_compound-chebi
togoid-config config/pubchem_compound-chebi update
# Success: output/tsv/pubchem_compound-chebi.tsv is updated
-> 2024-10-18T22:51:58 pubchem_compound-chebi
+> 2024-10-25T21:49:27 pubchem_compound-chebi
Rule for TSV (output/tsv/pubchem_compound-chebi.tsv)
------------------------------
Investigating output/tsv/pubchem_compound-chebi.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:51:58 +0900
+timestamp: 2024-10-25 21:49:27 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pubchem_compound-chembl_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pubchem_compound-chembl_compound.tsv is newer than config/pubchem_compound-chembl_compound/config.yaml
# File output/tsv/pubchem_compound-chembl_compound.tsv has no timestamp file
-# File output/tsv/pubchem_compound-chembl_compound.tsv is created 11.884871914566979 days ago (will be updated when >5 days)
+# File output/tsv/pubchem_compound-chembl_compound.tsv is created 6.956520880576389 days ago (will be updated when >5 days)
## Update config/pubchem_compound-chembl_compound/config.yaml => output/tsv/pubchem_compound-chembl_compound.tsv
-< 2024-10-18T22:51:58 pubchem_compound-chembl_compound
+< 2024-10-25T21:49:27 pubchem_compound-chembl_compound
togoid-config config/pubchem_compound-chembl_compound update
# Success: output/tsv/pubchem_compound-chembl_compound.tsv is updated
-> 2024-10-18T22:52:03 pubchem_compound-chembl_compound
+> 2024-10-25T21:49:32 pubchem_compound-chembl_compound
Rule for TSV (output/tsv/pubchem_compound-chembl_compound.tsv)
------------------------------
Investigating output/tsv/pubchem_compound-chembl_compound.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:52:03 +0900
+timestamp: 2024-10-25 21:49:32 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pubchem_compound-drugbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pubchem_compound-drugbank.tsv is newer than config/pubchem_compound-drugbank/config.yaml
# File output/tsv/pubchem_compound-drugbank.tsv has no timestamp file
-# File output/tsv/pubchem_compound-drugbank.tsv is created 11.884924684049793 days ago (will be updated when >5 days)
+# File output/tsv/pubchem_compound-drugbank.tsv is created 6.956572712007558 days ago (will be updated when >5 days)
## Update config/pubchem_compound-drugbank/config.yaml => output/tsv/pubchem_compound-drugbank.tsv
-< 2024-10-18T22:52:03 pubchem_compound-drugbank
+< 2024-10-25T21:49:32 pubchem_compound-drugbank
togoid-config config/pubchem_compound-drugbank update
# Success: output/tsv/pubchem_compound-drugbank.tsv is updated
-> 2024-10-18T22:52:04 pubchem_compound-drugbank
+> 2024-10-25T21:49:32 pubchem_compound-drugbank
Rule for TSV (output/tsv/pubchem_compound-drugbank.tsv)
------------------------------
Investigating output/tsv/pubchem_compound-drugbank.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:52:04 +0900
+timestamp: 2024-10-25 21:49:32 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pubchem_compound-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pubchem_compound-glytoucan.tsv is newer than config/pubchem_compound-glytoucan/config.yaml
# File output/tsv/pubchem_compound-glytoucan.tsv has no timestamp file
-# File output/tsv/pubchem_compound-glytoucan.tsv is created 11.884923393072153 days ago (will be updated when >5 days)
+# File output/tsv/pubchem_compound-glytoucan.tsv is created 6.956572107286863 days ago (will be updated when >5 days)
## Update config/pubchem_compound-glytoucan/config.yaml => output/tsv/pubchem_compound-glytoucan.tsv
-< 2024-10-18T22:52:04 pubchem_compound-glytoucan
+< 2024-10-25T21:49:32 pubchem_compound-glytoucan
togoid-config config/pubchem_compound-glytoucan update
# Success: output/tsv/pubchem_compound-glytoucan.tsv is updated
-> 2024-10-18T22:52:04 pubchem_compound-glytoucan
+> 2024-10-25T21:49:33 pubchem_compound-glytoucan
Rule for TSV (output/tsv/pubchem_compound-glytoucan.tsv)
------------------------------
Investigating output/tsv/pubchem_compound-glytoucan.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 22:52:04 +0900
+timestamp: 2024-10-25 21:49:33 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pubchem_compound-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pubchem_compound-inchi_key.tsv is newer than config/pubchem_compound-inchi_key/config.yaml
# File output/tsv/pubchem_compound-inchi_key.tsv has no timestamp file
-# File output/tsv/pubchem_compound-inchi_key.tsv is created 11.878520600119908 days ago (will be updated when >5 days)
+# File output/tsv/pubchem_compound-inchi_key.tsv is created 6.950430655277788 days ago (will be updated when >5 days)
## Update config/pubchem_compound-inchi_key/config.yaml => output/tsv/pubchem_compound-inchi_key.tsv
-< 2024-10-18T22:52:04 pubchem_compound-inchi_key
+< 2024-10-25T21:49:33 pubchem_compound-inchi_key
togoid-config config/pubchem_compound-inchi_key update
# Success: output/tsv/pubchem_compound-inchi_key.tsv is updated
-> 2024-10-18T23:00:55 pubchem_compound-inchi_key
+> 2024-10-25T21:57:12 pubchem_compound-inchi_key
Rule for TSV (output/tsv/pubchem_compound-inchi_key.tsv)
------------------------------
Investigating output/tsv/pubchem_compound-inchi_key.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 23:00:55 +0900
+timestamp: 2024-10-25 21:57:12 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pubchem_pathway-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pubchem_pathway-ncbigene.tsv is newer than config/pubchem_pathway-ncbigene/config.yaml
# File output/tsv/pubchem_pathway-ncbigene.tsv has no timestamp file
-# File output/tsv/pubchem_pathway-ncbigene.tsv is created 11.884663512202362 days ago (will be updated when >5 days)
+# File output/tsv/pubchem_pathway-ncbigene.tsv is created 6.955736543250174 days ago (will be updated when >5 days)
## Update config/pubchem_pathway-ncbigene/config.yaml => output/tsv/pubchem_pathway-ncbigene.tsv
-< 2024-10-18T23:00:55 pubchem_pathway-ncbigene
+< 2024-10-25T21:57:12 pubchem_pathway-ncbigene
togoid-config config/pubchem_pathway-ncbigene update
# Success: output/tsv/pubchem_pathway-ncbigene.tsv is updated
-> 2024-10-18T23:00:56 pubchem_pathway-ncbigene
+> 2024-10-25T21:57:12 pubchem_pathway-ncbigene
Rule for TSV (output/tsv/pubchem_pathway-ncbigene.tsv)
------------------------------
Investigating output/tsv/pubchem_pathway-ncbigene.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 23:00:56 +0900
+timestamp: 2024-10-25 21:57:12 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pubchem_pathway-pathbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pubchem_pathway-pathbank.tsv is newer than config/pubchem_pathway-pathbank/config.yaml
# File output/tsv/pubchem_pathway-pathbank.tsv has no timestamp file
-# File output/tsv/pubchem_pathway-pathbank.tsv is created 11.884662789894676 days ago (will be updated when >5 days)
+# File output/tsv/pubchem_pathway-pathbank.tsv is created 6.95573585900838 days ago (will be updated when >5 days)
## Update config/pubchem_pathway-pathbank/config.yaml => output/tsv/pubchem_pathway-pathbank.tsv
-< 2024-10-18T23:00:56 pubchem_pathway-pathbank
+< 2024-10-25T21:57:12 pubchem_pathway-pathbank
togoid-config config/pubchem_pathway-pathbank update
# Success: output/tsv/pubchem_pathway-pathbank.tsv is updated
-> 2024-10-18T23:00:56 pubchem_pathway-pathbank
+> 2024-10-25T21:57:12 pubchem_pathway-pathbank
Rule for TSV (output/tsv/pubchem_pathway-pathbank.tsv)
------------------------------
Investigating output/tsv/pubchem_pathway-pathbank.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 23:00:56 +0900
+timestamp: 2024-10-25 21:57:12 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pubchem_pathway-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pubchem_pathway-pubchem_compound.tsv is newer than config/pubchem_pathway-pubchem_compound/config.yaml
# File output/tsv/pubchem_pathway-pubchem_compound.tsv has no timestamp file
-# File output/tsv/pubchem_pathway-pubchem_compound.tsv is created 11.884635191833635 days ago (will be updated when >5 days)
+# File output/tsv/pubchem_pathway-pubchem_compound.tsv is created 6.955701728655521 days ago (will be updated when >5 days)
## Update config/pubchem_pathway-pubchem_compound/config.yaml => output/tsv/pubchem_pathway-pubchem_compound.tsv
-< 2024-10-18T23:00:56 pubchem_pathway-pubchem_compound
+< 2024-10-25T21:57:12 pubchem_pathway-pubchem_compound
togoid-config config/pubchem_pathway-pubchem_compound update
# Success: output/tsv/pubchem_pathway-pubchem_compound.tsv is updated
-> 2024-10-18T23:01:00 pubchem_pathway-pubchem_compound
+> 2024-10-25T21:57:15 pubchem_pathway-pubchem_compound
Rule for TSV (output/tsv/pubchem_pathway-pubchem_compound.tsv)
------------------------------
Investigating output/tsv/pubchem_pathway-pubchem_compound.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 23:01:00 +0900
+timestamp: 2024-10-25 21:57:15 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pubchem_pathway-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pubchem_pathway-reactome_pathway.tsv is newer than config/pubchem_pathway-reactome_pathway/config.yaml
# File output/tsv/pubchem_pathway-reactome_pathway.tsv has no timestamp file
-# File output/tsv/pubchem_pathway-reactome_pathway.tsv is created 11.884670181302477 days ago (will be updated when >5 days)
+# File output/tsv/pubchem_pathway-reactome_pathway.tsv is created 6.955726544749294 days ago (will be updated when >5 days)
## Update config/pubchem_pathway-reactome_pathway/config.yaml => output/tsv/pubchem_pathway-reactome_pathway.tsv
-< 2024-10-18T23:01:00 pubchem_pathway-reactome_pathway
+< 2024-10-25T21:57:15 pubchem_pathway-reactome_pathway
togoid-config config/pubchem_pathway-reactome_pathway update
# Success: output/tsv/pubchem_pathway-reactome_pathway.tsv is updated
-> 2024-10-18T23:01:00 pubchem_pathway-reactome_pathway
+> 2024-10-25T21:57:15 pubchem_pathway-reactome_pathway
Rule for TSV (output/tsv/pubchem_pathway-reactome_pathway.tsv)
------------------------------
Investigating output/tsv/pubchem_pathway-reactome_pathway.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 23:01:00 +0900
+timestamp: 2024-10-25 21:57:15 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pubchem_pathway-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pubchem_pathway-uniprot.tsv is newer than config/pubchem_pathway-uniprot/config.yaml
# File output/tsv/pubchem_pathway-uniprot.tsv has no timestamp file
-# File output/tsv/pubchem_pathway-uniprot.tsv is created 11.88465815309317 days ago (will be updated when >5 days)
+# File output/tsv/pubchem_pathway-uniprot.tsv is created 6.955713540341586 days ago (will be updated when >5 days)
## Update config/pubchem_pathway-uniprot/config.yaml => output/tsv/pubchem_pathway-uniprot.tsv
-< 2024-10-18T23:01:00 pubchem_pathway-uniprot
+< 2024-10-25T21:57:15 pubchem_pathway-uniprot
togoid-config config/pubchem_pathway-uniprot update
# Success: output/tsv/pubchem_pathway-uniprot.tsv is updated
-> 2024-10-18T23:01:02 pubchem_pathway-uniprot
+> 2024-10-25T21:57:17 pubchem_pathway-uniprot
Rule for TSV (output/tsv/pubchem_pathway-uniprot.tsv)
------------------------------
Investigating output/tsv/pubchem_pathway-uniprot.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 23:01:02 +0900
+timestamp: 2024-10-25 21:57:17 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for pubchem_pathway-wikipathways if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/pubchem_pathway-wikipathways.tsv is newer than config/pubchem_pathway-wikipathways/config.yaml
# File output/tsv/pubchem_pathway-wikipathways.tsv has no timestamp file
-# File output/tsv/pubchem_pathway-wikipathways.tsv is created 11.884671338633392 days ago (will be updated when >5 days)
+# File output/tsv/pubchem_pathway-wikipathways.tsv is created 6.95572617731757 days ago (will be updated when >5 days)
## Update config/pubchem_pathway-wikipathways/config.yaml => output/tsv/pubchem_pathway-wikipathways.tsv
-< 2024-10-18T23:01:02 pubchem_pathway-wikipathways
+< 2024-10-25T21:57:17 pubchem_pathway-wikipathways
togoid-config config/pubchem_pathway-wikipathways update
# Success: output/tsv/pubchem_pathway-wikipathways.tsv is updated
-> 2024-10-18T23:01:02 pubchem_pathway-wikipathways
+> 2024-10-25T21:57:17 pubchem_pathway-wikipathways
Rule for TSV (output/tsv/pubchem_pathway-wikipathways.tsv)
------------------------------
Investigating output/tsv/pubchem_pathway-wikipathways.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-18 23:01:02 +0900
+timestamp: 2024-10-25 21:57:17 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for reactome_pathway-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/reactome_pathway-chebi.tsv is newer than config/reactome_pathway-chebi/config.yaml
# File output/tsv/reactome_pathway-chebi.tsv has no timestamp file
-# File output/tsv/reactome_pathway-chebi.tsv is created 11.884666387764584 days ago (will be updated when >5 days)
+# File output/tsv/reactome_pathway-chebi.tsv is created 6.955723918509364 days ago (will be updated when >5 days)
## Update config/reactome_pathway-chebi/config.yaml => output/tsv/reactome_pathway-chebi.tsv
-< 2024-10-18T23:01:02 reactome_pathway-chebi
+< 2024-10-25T21:57:17 reactome_pathway-chebi
togoid-config config/reactome_pathway-chebi update
# Success: output/tsv/reactome_pathway-chebi.tsv is updated
-> 2024-10-18T23:01:03 reactome_pathway-chebi
+> 2024-10-25T21:57:18 reactome_pathway-chebi
Rule for TSV (output/tsv/reactome_pathway-chebi.tsv)
------------------------------
Investigating output/tsv/reactome_pathway-chebi.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:01:03 +0900
+timestamp: 2024-10-25 21:57:18 +0900
pre-requisites:
--output/tsv/ ()
---prepare:reactome (2024-10-18 23:01:03 +0900)
-latest-prerequisite time: 2024-10-18 23:01:03 +0900
+--prepare:reactome (2024-10-25 21:57:18 +0900)
+latest-prerequisite time: 2024-10-25 21:57:18 +0900
................................
### Update TSV for reactome_pathway-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/reactome_pathway-go.tsv is newer than config/reactome_pathway-go/config.yaml
# File output/tsv/reactome_pathway-go.tsv has no timestamp file
-# File output/tsv/reactome_pathway-go.tsv is created 11.884668033814433 days ago (will be updated when >5 days)
+# File output/tsv/reactome_pathway-go.tsv is created 6.955724733018738 days ago (will be updated when >5 days)
## Update config/reactome_pathway-go/config.yaml => output/tsv/reactome_pathway-go.tsv
-< 2024-10-18T23:01:03 reactome_pathway-go
+< 2024-10-25T21:57:18 reactome_pathway-go
togoid-config config/reactome_pathway-go update
# Success: output/tsv/reactome_pathway-go.tsv is updated
-> 2024-10-18T23:01:03 reactome_pathway-go
+> 2024-10-25T21:57:18 reactome_pathway-go
Rule for TSV (output/tsv/reactome_pathway-go.tsv)
------------------------------
Investigating output/tsv/reactome_pathway-go.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:01:03 +0900
+timestamp: 2024-10-25 21:57:18 +0900
pre-requisites:
--output/tsv/ ()
---prepare:reactome (2024-10-18 23:01:03 +0900)
-latest-prerequisite time: 2024-10-18 23:01:03 +0900
+--prepare:reactome (2024-10-25 21:57:18 +0900)
+latest-prerequisite time: 2024-10-25 21:57:18 +0900
................................
### Update TSV for reactome_pathway-iuphar_ligand if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/reactome_pathway-iuphar_ligand.tsv is newer than config/reactome_pathway-iuphar_ligand/config.yaml
# File output/tsv/reactome_pathway-iuphar_ligand.tsv has no timestamp file
-# File output/tsv/reactome_pathway-iuphar_ligand.tsv is created 11.884668655426447 days ago (will be updated when >5 days)
+# File output/tsv/reactome_pathway-iuphar_ligand.tsv is created 6.955726068155856 days ago (will be updated when >5 days)
## Update config/reactome_pathway-iuphar_ligand/config.yaml => output/tsv/reactome_pathway-iuphar_ligand.tsv
-< 2024-10-18T23:01:03 reactome_pathway-iuphar_ligand
+< 2024-10-25T21:57:18 reactome_pathway-iuphar_ligand
togoid-config config/reactome_pathway-iuphar_ligand update
# Success: output/tsv/reactome_pathway-iuphar_ligand.tsv is updated
-> 2024-10-18T23:01:04 reactome_pathway-iuphar_ligand
+> 2024-10-25T21:57:19 reactome_pathway-iuphar_ligand
Rule for TSV (output/tsv/reactome_pathway-iuphar_ligand.tsv)
------------------------------
Investigating output/tsv/reactome_pathway-iuphar_ligand.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:01:04 +0900
+timestamp: 2024-10-25 21:57:19 +0900
pre-requisites:
--output/tsv/ ()
---prepare:reactome (2024-10-18 23:01:04 +0900)
-latest-prerequisite time: 2024-10-18 23:01:04 +0900
+--prepare:reactome (2024-10-25 21:57:19 +0900)
+latest-prerequisite time: 2024-10-25 21:57:19 +0900
................................
### Update TSV for reactome_pathway-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/reactome_pathway-mirbase.tsv is newer than config/reactome_pathway-mirbase/config.yaml
# File output/tsv/reactome_pathway-mirbase.tsv has no timestamp file
-# File output/tsv/reactome_pathway-mirbase.tsv is created 11.884669767610486 days ago (will be updated when >5 days)
+# File output/tsv/reactome_pathway-mirbase.tsv is created 6.955727337851864 days ago (will be updated when >5 days)
## Update config/reactome_pathway-mirbase/config.yaml => output/tsv/reactome_pathway-mirbase.tsv
-< 2024-10-18T23:01:04 reactome_pathway-mirbase
+< 2024-10-25T21:57:19 reactome_pathway-mirbase
togoid-config config/reactome_pathway-mirbase update
# Success: output/tsv/reactome_pathway-mirbase.tsv is updated
-> 2024-10-18T23:01:04 reactome_pathway-mirbase
+> 2024-10-25T21:57:19 reactome_pathway-mirbase
Rule for TSV (output/tsv/reactome_pathway-mirbase.tsv)
------------------------------
Investigating output/tsv/reactome_pathway-mirbase.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:01:04 +0900
+timestamp: 2024-10-25 21:57:19 +0900
pre-requisites:
--output/tsv/ ()
---prepare:reactome (2024-10-18 23:01:04 +0900)
-latest-prerequisite time: 2024-10-18 23:01:04 +0900
+--prepare:reactome (2024-10-25 21:57:19 +0900)
+latest-prerequisite time: 2024-10-25 21:57:19 +0900
................................
### Update TSV for reactome_pathway-reactome_reaction if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/reactome_pathway-reactome_reaction.tsv is newer than config/reactome_pathway-reactome_reaction/config.yaml
# File output/tsv/reactome_pathway-reactome_reaction.tsv has no timestamp file
-# File output/tsv/reactome_pathway-reactome_reaction.tsv is created 11.884658393161343 days ago (will be updated when >5 days)
+# File output/tsv/reactome_pathway-reactome_reaction.tsv is created 6.9557167564654865 days ago (will be updated when >5 days)
## Update config/reactome_pathway-reactome_reaction/config.yaml => output/tsv/reactome_pathway-reactome_reaction.tsv
-< 2024-10-18T23:01:04 reactome_pathway-reactome_reaction
+< 2024-10-25T21:57:19 reactome_pathway-reactome_reaction
togoid-config config/reactome_pathway-reactome_reaction update
# Success: output/tsv/reactome_pathway-reactome_reaction.tsv is updated
-> 2024-10-18T23:01:05 reactome_pathway-reactome_reaction
+> 2024-10-25T21:57:20 reactome_pathway-reactome_reaction
Rule for TSV (output/tsv/reactome_pathway-reactome_reaction.tsv)
------------------------------
Investigating output/tsv/reactome_pathway-reactome_reaction.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:01:05 +0900
+timestamp: 2024-10-25 21:57:20 +0900
pre-requisites:
--output/tsv/ ()
---prepare:reactome (2024-10-18 23:01:05 +0900)
-latest-prerequisite time: 2024-10-18 23:01:05 +0900
+--prepare:reactome (2024-10-25 21:57:20 +0900)
+latest-prerequisite time: 2024-10-25 21:57:20 +0900
................................
### Update TSV for reactome_pathway-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/reactome_pathway-uniprot.tsv is newer than config/reactome_pathway-uniprot/config.yaml
# File output/tsv/reactome_pathway-uniprot.tsv has no timestamp file
-# File output/tsv/reactome_pathway-uniprot.tsv is created 11.88464371445374 days ago (will be updated when >5 days)
+# File output/tsv/reactome_pathway-uniprot.tsv is created 6.95571297759801 days ago (will be updated when >5 days)
## Update config/reactome_pathway-uniprot/config.yaml => output/tsv/reactome_pathway-uniprot.tsv
-< 2024-10-18T23:01:05 reactome_pathway-uniprot
+< 2024-10-25T21:57:20 reactome_pathway-uniprot
togoid-config config/reactome_pathway-uniprot update
# Success: output/tsv/reactome_pathway-uniprot.tsv is updated
-> 2024-10-18T23:01:06 reactome_pathway-uniprot
+> 2024-10-25T21:57:21 reactome_pathway-uniprot
Rule for TSV (output/tsv/reactome_pathway-uniprot.tsv)
------------------------------
Investigating output/tsv/reactome_pathway-uniprot.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:01:06 +0900
+timestamp: 2024-10-25 21:57:21 +0900
pre-requisites:
--output/tsv/ ()
---prepare:reactome (2024-10-18 23:01:06 +0900)
-latest-prerequisite time: 2024-10-18 23:01:06 +0900
+--prepare:reactome (2024-10-25 21:57:21 +0900)
+latest-prerequisite time: 2024-10-25 21:57:21 +0900
................................
### Update TSV for reactome_reaction-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/reactome_reaction-chebi.tsv is newer than config/reactome_reaction-chebi/config.yaml
# File output/tsv/reactome_reaction-chebi.tsv has no timestamp file
-# File output/tsv/reactome_reaction-chebi.tsv is created 11.88464749595816 days ago (will be updated when >5 days)
+# File output/tsv/reactome_reaction-chebi.tsv is created 6.9557214592492365 days ago (will be updated when >5 days)
## Update config/reactome_reaction-chebi/config.yaml => output/tsv/reactome_reaction-chebi.tsv
-< 2024-10-18T23:01:06 reactome_reaction-chebi
+< 2024-10-25T21:57:21 reactome_reaction-chebi
togoid-config config/reactome_reaction-chebi update
# Success: output/tsv/reactome_reaction-chebi.tsv is updated
-> 2024-10-18T23:01:07 reactome_reaction-chebi
+> 2024-10-25T21:57:22 reactome_reaction-chebi
Rule for TSV (output/tsv/reactome_reaction-chebi.tsv)
------------------------------
Investigating output/tsv/reactome_reaction-chebi.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:01:07 +0900
+timestamp: 2024-10-25 21:57:22 +0900
pre-requisites:
--output/tsv/ ()
---prepare:reactome (2024-10-18 23:01:07 +0900)
-latest-prerequisite time: 2024-10-18 23:01:07 +0900
+--prepare:reactome (2024-10-25 21:57:22 +0900)
+latest-prerequisite time: 2024-10-25 21:57:22 +0900
................................
### Update TSV for reactome_reaction-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/reactome_reaction-go.tsv is newer than config/reactome_reaction-go/config.yaml
# File output/tsv/reactome_reaction-go.tsv has no timestamp file
-# File output/tsv/reactome_reaction-go.tsv is created 11.884648729271678 days ago (will be updated when >5 days)
+# File output/tsv/reactome_reaction-go.tsv is created 6.9557236107592475 days ago (will be updated when >5 days)
## Update config/reactome_reaction-go/config.yaml => output/tsv/reactome_reaction-go.tsv
-< 2024-10-18T23:01:07 reactome_reaction-go
+< 2024-10-25T21:57:22 reactome_reaction-go
togoid-config config/reactome_reaction-go update
# Success: output/tsv/reactome_reaction-go.tsv is updated
-> 2024-10-18T23:01:07 reactome_reaction-go
+> 2024-10-25T21:57:22 reactome_reaction-go
Rule for TSV (output/tsv/reactome_reaction-go.tsv)
------------------------------
Investigating output/tsv/reactome_reaction-go.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:01:07 +0900
+timestamp: 2024-10-25 21:57:22 +0900
pre-requisites:
--output/tsv/ ()
---prepare:reactome (2024-10-18 23:01:07 +0900)
-latest-prerequisite time: 2024-10-18 23:01:07 +0900
+--prepare:reactome (2024-10-25 21:57:22 +0900)
+latest-prerequisite time: 2024-10-25 21:57:22 +0900
................................
### Update TSV for reactome_reaction-iuphar_ligand if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/reactome_reaction-iuphar_ligand.tsv is newer than config/reactome_reaction-iuphar_ligand/config.yaml
# File output/tsv/reactome_reaction-iuphar_ligand.tsv has no timestamp file
-# File output/tsv/reactome_reaction-iuphar_ligand.tsv is created 11.884650422750301 days ago (will be updated when >5 days)
+# File output/tsv/reactome_reaction-iuphar_ligand.tsv is created 6.955724884479167 days ago (will be updated when >5 days)
## Update config/reactome_reaction-iuphar_ligand/config.yaml => output/tsv/reactome_reaction-iuphar_ligand.tsv
-< 2024-10-18T23:01:07 reactome_reaction-iuphar_ligand
+< 2024-10-25T21:57:22 reactome_reaction-iuphar_ligand
togoid-config config/reactome_reaction-iuphar_ligand update
# Success: output/tsv/reactome_reaction-iuphar_ligand.tsv is updated
-> 2024-10-18T23:01:07 reactome_reaction-iuphar_ligand
+> 2024-10-25T21:57:22 reactome_reaction-iuphar_ligand
Rule for TSV (output/tsv/reactome_reaction-iuphar_ligand.tsv)
------------------------------
Investigating output/tsv/reactome_reaction-iuphar_ligand.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:01:07 +0900
+timestamp: 2024-10-25 21:57:22 +0900
pre-requisites:
--output/tsv/ ()
---prepare:reactome (2024-10-18 23:01:07 +0900)
-latest-prerequisite time: 2024-10-18 23:01:07 +0900
+--prepare:reactome (2024-10-25 21:57:22 +0900)
+latest-prerequisite time: 2024-10-25 21:57:22 +0900
................................
### Update TSV for reactome_reaction-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/reactome_reaction-mirbase.tsv is newer than config/reactome_reaction-mirbase/config.yaml
# File output/tsv/reactome_reaction-mirbase.tsv has no timestamp file
-# File output/tsv/reactome_reaction-mirbase.tsv is created 11.884651320938774 days ago (will be updated when >5 days)
+# File output/tsv/reactome_reaction-mirbase.tsv is created 6.955726174145347 days ago (will be updated when >5 days)
## Update config/reactome_reaction-mirbase/config.yaml => output/tsv/reactome_reaction-mirbase.tsv
-< 2024-10-18T23:01:07 reactome_reaction-mirbase
+< 2024-10-25T21:57:22 reactome_reaction-mirbase
togoid-config config/reactome_reaction-mirbase update
# Success: output/tsv/reactome_reaction-mirbase.tsv is updated
-> 2024-10-18T23:01:08 reactome_reaction-mirbase
+> 2024-10-25T21:57:23 reactome_reaction-mirbase
Rule for TSV (output/tsv/reactome_reaction-mirbase.tsv)
------------------------------
Investigating output/tsv/reactome_reaction-mirbase.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:01:08 +0900
+timestamp: 2024-10-25 21:57:23 +0900
pre-requisites:
--output/tsv/ ()
---prepare:reactome (2024-10-18 23:01:08 +0900)
-latest-prerequisite time: 2024-10-18 23:01:08 +0900
+--prepare:reactome (2024-10-25 21:57:23 +0900)
+latest-prerequisite time: 2024-10-25 21:57:23 +0900
................................
### Update TSV for reactome_reaction-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/reactome_reaction-uniprot.tsv is newer than config/reactome_reaction-uniprot/config.yaml
# File output/tsv/reactome_reaction-uniprot.tsv has no timestamp file
-# File output/tsv/reactome_reaction-uniprot.tsv is created 11.884632159445207 days ago (will be updated when >5 days)
+# File output/tsv/reactome_reaction-uniprot.tsv is created 6.955716640643471 days ago (will be updated when >5 days)
## Update config/reactome_reaction-uniprot/config.yaml => output/tsv/reactome_reaction-uniprot.tsv
-< 2024-10-18T23:01:08 reactome_reaction-uniprot
+< 2024-10-25T21:57:23 reactome_reaction-uniprot
togoid-config config/reactome_reaction-uniprot update
# Success: output/tsv/reactome_reaction-uniprot.tsv is updated
-> 2024-10-18T23:01:09 reactome_reaction-uniprot
+> 2024-10-25T21:57:23 reactome_reaction-uniprot
Rule for TSV (output/tsv/reactome_reaction-uniprot.tsv)
------------------------------
Investigating output/tsv/reactome_reaction-uniprot.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:01:09 +0900
+timestamp: 2024-10-25 21:57:23 +0900
pre-requisites:
--output/tsv/ ()
---prepare:reactome (2024-10-18 23:01:09 +0900)
-latest-prerequisite time: 2024-10-18 23:01:09 +0900
+--prepare:reactome (2024-10-25 21:57:23 +0900)
+latest-prerequisite time: 2024-10-25 21:57:23 +0900
................................
### Update TSV for refseq_protein-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/refseq_protein-uniprot.tsv is newer than config/refseq_protein-uniprot/config.yaml
# File output/tsv/refseq_protein-uniprot.tsv is older than input/refseq_protein/download.lock
## Update config/refseq_protein-uniprot/config.yaml => output/tsv/refseq_protein-uniprot.tsv
-< 2024-10-18T23:01:09 refseq_protein-uniprot
+< 2024-10-25T21:57:23 refseq_protein-uniprot
togoid-config config/refseq_protein-uniprot update
# Success: output/tsv/refseq_protein-uniprot.tsv is updated
-> 2024-10-18T23:07:25 refseq_protein-uniprot
+> 2024-10-25T22:03:33 refseq_protein-uniprot
Rule for TSV (output/tsv/refseq_protein-uniprot.tsv)
------------------------------
Investigating output/tsv/refseq_protein-uniprot.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:07:25 +0900
+timestamp: 2024-10-25 22:03:33 +0900
pre-requisites:
--output/tsv/ ()
---prepare:refseq_protein (2024-10-18 23:07:25 +0900)
-latest-prerequisite time: 2024-10-18 23:07:25 +0900
+--prepare:refseq_protein (2024-10-25 22:03:33 +0900)
+latest-prerequisite time: 2024-10-25 22:03:33 +0900
................................
### Update TSV for refseq_rna-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -4628,8 +4345,8 @@ task needed: true
timestamp: 2024-09-21 06:40:08 +0900
pre-requisites:
--output/tsv/ ()
---prepare:refseq_rna (2024-10-18 23:07:25 +0900)
-latest-prerequisite time: 2024-10-18 23:07:25 +0900
+--prepare:refseq_rna (2024-10-25 22:03:33 +0900)
+latest-prerequisite time: 2024-10-25 22:03:33 +0900
................................
### Update TSV for refseq_rna-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -4644,8 +4361,8 @@ task needed: true
timestamp: 2024-09-21 06:41:55 +0900
pre-requisites:
--output/tsv/ ()
---prepare:refseq_rna (2024-10-18 23:07:25 +0900)
-latest-prerequisite time: 2024-10-18 23:07:25 +0900
+--prepare:refseq_rna (2024-10-25 22:03:33 +0900)
+latest-prerequisite time: 2024-10-25 22:03:33 +0900
................................
### Update TSV for refseq_rna-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -4660,8 +4377,8 @@ task needed: true
timestamp: 2024-09-21 06:46:43 +0900
pre-requisites:
--output/tsv/ ()
---prepare:refseq_rna (2024-10-18 23:07:25 +0900)
-latest-prerequisite time: 2024-10-18 23:07:25 +0900
+--prepare:refseq_rna (2024-10-25 22:03:33 +0900)
+latest-prerequisite time: 2024-10-25 22:03:33 +0900
................................
### Update TSV for refseq_rna-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -4676,8 +4393,8 @@ task needed: true
timestamp: 2024-09-21 06:48:33 +0900
pre-requisites:
--output/tsv/ ()
---prepare:refseq_rna (2024-10-18 23:07:25 +0900)
-latest-prerequisite time: 2024-10-18 23:07:25 +0900
+--prepare:refseq_rna (2024-10-25 22:03:33 +0900)
+latest-prerequisite time: 2024-10-25 22:03:33 +0900
................................
### Update TSV for refseq_rna-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -4692,8 +4409,8 @@ task needed: true
timestamp: 2024-09-21 06:50:34 +0900
pre-requisites:
--output/tsv/ ()
---prepare:refseq_rna (2024-10-18 23:07:25 +0900)
-latest-prerequisite time: 2024-10-18 23:07:25 +0900
+--prepare:refseq_rna (2024-10-25 22:03:33 +0900)
+latest-prerequisite time: 2024-10-25 22:03:33 +0900
................................
### Update TSV for refseq_rna-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -4708,8 +4425,8 @@ task needed: true
timestamp: 2024-09-21 06:55:14 +0900
pre-requisites:
--output/tsv/ ()
---prepare:refseq_rna (2024-10-18 23:07:25 +0900)
-latest-prerequisite time: 2024-10-18 23:07:25 +0900
+--prepare:refseq_rna (2024-10-25 22:03:33 +0900)
+latest-prerequisite time: 2024-10-25 22:03:33 +0900
................................
### Update TSV for refseq_rna-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -4724,8 +4441,8 @@ task needed: true
timestamp: 2024-09-21 06:58:58 +0900
pre-requisites:
--output/tsv/ ()
---prepare:refseq_rna (2024-10-18 23:07:25 +0900)
-latest-prerequisite time: 2024-10-18 23:07:25 +0900
+--prepare:refseq_rna (2024-10-25 22:03:33 +0900)
+latest-prerequisite time: 2024-10-25 22:03:33 +0900
................................
### Update TSV for rhea-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -4740,8 +4457,8 @@ task needed: true
timestamp: 2024-10-07 01:54:59 +0900
pre-requisites:
--output/tsv/ ()
---prepare:rhea (2024-10-18 23:07:25 +0900)
-latest-prerequisite time: 2024-10-18 23:07:25 +0900
+--prepare:rhea (2024-10-25 22:03:33 +0900)
+latest-prerequisite time: 2024-10-25 22:03:33 +0900
................................
### Update TSV for rhea-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -4756,8 +4473,8 @@ task needed: true
timestamp: 2024-10-07 01:55:00 +0900
pre-requisites:
--output/tsv/ ()
---prepare:rhea (2024-10-18 23:07:25 +0900)
-latest-prerequisite time: 2024-10-18 23:07:25 +0900
+--prepare:rhea (2024-10-25 22:03:33 +0900)
+latest-prerequisite time: 2024-10-25 22:03:33 +0900
................................
### Update TSV for rhea-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -4772,8 +4489,8 @@ task needed: true
timestamp: 2024-10-07 01:55:00 +0900
pre-requisites:
--output/tsv/ ()
---prepare:rhea (2024-10-18 23:07:25 +0900)
-latest-prerequisite time: 2024-10-18 23:07:25 +0900
+--prepare:rhea (2024-10-25 22:03:33 +0900)
+latest-prerequisite time: 2024-10-25 22:03:33 +0900
................................
### Update TSV for rhea-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -4788,8 +4505,8 @@ task needed: true
timestamp: 2024-10-07 01:55:02 +0900
pre-requisites:
--output/tsv/ ()
---prepare:rhea (2024-10-18 23:07:25 +0900)
-latest-prerequisite time: 2024-10-18 23:07:25 +0900
+--prepare:rhea (2024-10-25 22:03:33 +0900)
+latest-prerequisite time: 2024-10-25 22:03:33 +0900
................................
### Update TSV for rhea-reactome_reaction if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -4804,8 +4521,8 @@ task needed: true
timestamp: 2024-10-07 01:55:03 +0900
pre-requisites:
--output/tsv/ ()
---prepare:rhea (2024-10-18 23:07:25 +0900)
-latest-prerequisite time: 2024-10-18 23:07:25 +0900
+--prepare:rhea (2024-10-25 22:03:33 +0900)
+latest-prerequisite time: 2024-10-25 22:03:33 +0900
................................
### Update TSV for rhea-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -4820,656 +4537,656 @@ task needed: true
timestamp: 2024-10-07 01:55:41 +0900
pre-requisites:
--output/tsv/ ()
---prepare:rhea (2024-10-18 23:07:25 +0900)
-latest-prerequisite time: 2024-10-18 23:07:25 +0900
+--prepare:rhea (2024-10-25 22:03:33 +0900)
+latest-prerequisite time: 2024-10-25 22:03:33 +0900
................................
### Update TSV for sra_accession-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_accession-bioproject.tsv is newer than config/sra_accession-bioproject/config.yaml
# File output/tsv/sra_accession-bioproject.tsv has no timestamp file
-# File output/tsv/sra_accession-bioproject.tsv is created 6.395081311850694 days ago (will be updated when >5 days)
+# File output/tsv/sra_accession-bioproject.tsv is created 6.954395777528878 days ago (will be updated when >5 days)
## Update config/sra_accession-bioproject/config.yaml => output/tsv/sra_accession-bioproject.tsv
-< 2024-10-18T23:07:25 sra_accession-bioproject
+< 2024-10-25T22:03:33 sra_accession-bioproject
togoid-config config/sra_accession-bioproject update
# Success: output/tsv/sra_accession-bioproject.tsv is updated
-> 2024-10-18T23:09:14 sra_accession-bioproject
+> 2024-10-25T22:05:22 sra_accession-bioproject
Rule for TSV (output/tsv/sra_accession-bioproject.tsv)
------------------------------
Investigating output/tsv/sra_accession-bioproject.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:09:14 +0900
+timestamp: 2024-10-25 22:05:22 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-18 23:09:14 +0900)
-latest-prerequisite time: 2024-10-18 23:09:14 +0900
+--prepare:sra (2024-10-25 22:05:22 +0900)
+latest-prerequisite time: 2024-10-25 22:05:22 +0900
................................
### Update TSV for sra_accession-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_accession-biosample.tsv is newer than config/sra_accession-biosample/config.yaml
# File output/tsv/sra_accession-biosample.tsv has no timestamp file
-# File output/tsv/sra_accession-biosample.tsv is created 6.390563437871806 days ago (will be updated when >5 days)
+# File output/tsv/sra_accession-biosample.tsv is created 6.94996633518206 days ago (will be updated when >5 days)
## Update config/sra_accession-biosample/config.yaml => output/tsv/sra_accession-biosample.tsv
-< 2024-10-18T23:09:14 sra_accession-biosample
+< 2024-10-25T22:05:23 sra_accession-biosample
togoid-config config/sra_accession-biosample update
# Success: output/tsv/sra_accession-biosample.tsv is updated
-> 2024-10-18T23:17:25 sra_accession-biosample
+> 2024-10-25T22:13:38 sra_accession-biosample
Rule for TSV (output/tsv/sra_accession-biosample.tsv)
------------------------------
Investigating output/tsv/sra_accession-biosample.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:17:25 +0900
+timestamp: 2024-10-25 22:13:38 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-18 23:17:25 +0900)
-latest-prerequisite time: 2024-10-18 23:17:25 +0900
+--prepare:sra (2024-10-25 22:13:38 +0900)
+latest-prerequisite time: 2024-10-25 22:13:38 +0900
................................
### Update TSV for sra_accession-sra_analysis if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_accession-sra_analysis.tsv is newer than config/sra_accession-sra_analysis/config.yaml
# File output/tsv/sra_accession-sra_analysis.tsv has no timestamp file
-# File output/tsv/sra_accession-sra_analysis.tsv is created 6.395309173791979 days ago (will be updated when >5 days)
+# File output/tsv/sra_accession-sra_analysis.tsv is created 6.954920081424803 days ago (will be updated when >5 days)
## Update config/sra_accession-sra_analysis/config.yaml => output/tsv/sra_accession-sra_analysis.tsv
-< 2024-10-18T23:17:25 sra_accession-sra_analysis
+< 2024-10-25T22:13:38 sra_accession-sra_analysis
togoid-config config/sra_accession-sra_analysis update
# Success: output/tsv/sra_accession-sra_analysis.tsv is updated
-> 2024-10-18T23:18:33 sra_accession-sra_analysis
+> 2024-10-25T22:14:49 sra_accession-sra_analysis
Rule for TSV (output/tsv/sra_accession-sra_analysis.tsv)
------------------------------
Investigating output/tsv/sra_accession-sra_analysis.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:18:33 +0900
+timestamp: 2024-10-25 22:14:49 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-18 23:18:33 +0900)
-latest-prerequisite time: 2024-10-18 23:18:33 +0900
+--prepare:sra (2024-10-25 22:14:49 +0900)
+latest-prerequisite time: 2024-10-25 22:14:49 +0900
................................
### Update TSV for sra_accession-sra_experiment if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_accession-sra_experiment.tsv is newer than config/sra_accession-sra_experiment/config.yaml
# File output/tsv/sra_accession-sra_experiment.tsv has no timestamp file
-# File output/tsv/sra_accession-sra_experiment.tsv is created 6.39121187335368 days ago (will be updated when >5 days)
+# File output/tsv/sra_accession-sra_experiment.tsv is created 6.9508856201723725 days ago (will be updated when >5 days)
## Update config/sra_accession-sra_experiment/config.yaml => output/tsv/sra_accession-sra_experiment.tsv
-< 2024-10-18T23:18:33 sra_accession-sra_experiment
+< 2024-10-25T22:14:49 sra_accession-sra_experiment
togoid-config config/sra_accession-sra_experiment update
# Success: output/tsv/sra_accession-sra_experiment.tsv is updated
-> 2024-10-18T23:25:33 sra_accession-sra_experiment
+> 2024-10-25T22:21:42 sra_accession-sra_experiment
Rule for TSV (output/tsv/sra_accession-sra_experiment.tsv)
------------------------------
Investigating output/tsv/sra_accession-sra_experiment.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:25:33 +0900
+timestamp: 2024-10-25 22:21:42 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-18 23:25:33 +0900)
-latest-prerequisite time: 2024-10-18 23:25:33 +0900
+--prepare:sra (2024-10-25 22:21:42 +0900)
+latest-prerequisite time: 2024-10-25 22:21:42 +0900
................................
### Update TSV for sra_accession-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_accession-sra_project.tsv is newer than config/sra_accession-sra_project/config.yaml
# File output/tsv/sra_accession-sra_project.tsv has no timestamp file
-# File output/tsv/sra_accession-sra_project.tsv is created 6.395242266038379 days ago (will be updated when >5 days)
+# File output/tsv/sra_accession-sra_project.tsv is created 6.954881449087951 days ago (will be updated when >5 days)
## Update config/sra_accession-sra_project/config.yaml => output/tsv/sra_accession-sra_project.tsv
-< 2024-10-18T23:25:33 sra_accession-sra_project
+< 2024-10-25T22:21:42 sra_accession-sra_project
togoid-config config/sra_accession-sra_project update
# Success: output/tsv/sra_accession-sra_project.tsv is updated
-> 2024-10-18T23:26:40 sra_accession-sra_project
+> 2024-10-25T22:22:50 sra_accession-sra_project
Rule for TSV (output/tsv/sra_accession-sra_project.tsv)
------------------------------
Investigating output/tsv/sra_accession-sra_project.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:26:40 +0900
+timestamp: 2024-10-25 22:22:50 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-18 23:26:40 +0900)
-latest-prerequisite time: 2024-10-18 23:26:40 +0900
+--prepare:sra (2024-10-25 22:22:50 +0900)
+latest-prerequisite time: 2024-10-25 22:22:50 +0900
................................
### Update TSV for sra_accession-sra_run if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_accession-sra_run.tsv is newer than config/sra_accession-sra_run/config.yaml
# File output/tsv/sra_accession-sra_run.tsv has no timestamp file
-# File output/tsv/sra_accession-sra_run.tsv is created 6.390451837286609 days ago (will be updated when >5 days)
+# File output/tsv/sra_accession-sra_run.tsv is created 6.950260640138623 days ago (will be updated when >5 days)
## Update config/sra_accession-sra_run/config.yaml => output/tsv/sra_accession-sra_run.tsv
-< 2024-10-18T23:26:40 sra_accession-sra_run
+< 2024-10-25T22:22:50 sra_accession-sra_run
togoid-config config/sra_accession-sra_run update
# Success: output/tsv/sra_accession-sra_run.tsv is updated
-> 2024-10-18T23:34:28 sra_accession-sra_run
+> 2024-10-25T22:30:38 sra_accession-sra_run
Rule for TSV (output/tsv/sra_accession-sra_run.tsv)
------------------------------
Investigating output/tsv/sra_accession-sra_run.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:34:28 +0900
+timestamp: 2024-10-25 22:30:37 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-18 23:34:28 +0900)
-latest-prerequisite time: 2024-10-18 23:34:28 +0900
+--prepare:sra (2024-10-25 22:30:38 +0900)
+latest-prerequisite time: 2024-10-25 22:30:38 +0900
................................
### Update TSV for sra_accession-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_accession-sra_sample.tsv is newer than config/sra_accession-sra_sample/config.yaml
# File output/tsv/sra_accession-sra_sample.tsv has no timestamp file
-# File output/tsv/sra_accession-sra_sample.tsv is created 6.391061663625787 days ago (will be updated when >5 days)
+# File output/tsv/sra_accession-sra_sample.tsv is created 6.951043041716586 days ago (will be updated when >5 days)
## Update config/sra_accession-sra_sample/config.yaml => output/tsv/sra_accession-sra_sample.tsv
-< 2024-10-18T23:34:28 sra_accession-sra_sample
+< 2024-10-25T22:30:38 sra_accession-sra_sample
togoid-config config/sra_accession-sra_sample update
# Success: output/tsv/sra_accession-sra_sample.tsv is updated
-> 2024-10-18T23:41:07 sra_accession-sra_sample
+> 2024-10-25T22:37:10 sra_accession-sra_sample
Rule for TSV (output/tsv/sra_accession-sra_sample.tsv)
------------------------------
Investigating output/tsv/sra_accession-sra_sample.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:41:07 +0900
+timestamp: 2024-10-25 22:37:10 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-18 23:41:07 +0900)
-latest-prerequisite time: 2024-10-18 23:41:07 +0900
+--prepare:sra (2024-10-25 22:37:10 +0900)
+latest-prerequisite time: 2024-10-25 22:37:10 +0900
................................
### Update TSV for sra_experiment-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_experiment-bioproject.tsv is newer than config/sra_experiment-bioproject/config.yaml
# File output/tsv/sra_experiment-bioproject.tsv has no timestamp file
-# File output/tsv/sra_experiment-bioproject.tsv is created 6.3930719803841205 days ago (will be updated when >5 days)
+# File output/tsv/sra_experiment-bioproject.tsv is created 6.953100027371887 days ago (will be updated when >5 days)
## Update config/sra_experiment-bioproject/config.yaml => output/tsv/sra_experiment-bioproject.tsv
-< 2024-10-18T23:41:07 sra_experiment-bioproject
+< 2024-10-25T22:37:10 sra_experiment-bioproject
togoid-config config/sra_experiment-bioproject update
# Success: output/tsv/sra_experiment-bioproject.tsv is updated
-> 2024-10-18T23:44:42 sra_experiment-bioproject
+> 2024-10-25T22:40:46 sra_experiment-bioproject
Rule for TSV (output/tsv/sra_experiment-bioproject.tsv)
------------------------------
Investigating output/tsv/sra_experiment-bioproject.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:44:42 +0900
+timestamp: 2024-10-25 22:40:46 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-18 23:44:42 +0900)
-latest-prerequisite time: 2024-10-18 23:44:42 +0900
+--prepare:sra (2024-10-25 22:40:46 +0900)
+latest-prerequisite time: 2024-10-25 22:40:46 +0900
................................
### Update TSV for sra_experiment-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_experiment-biosample.tsv is newer than config/sra_experiment-biosample/config.yaml
# File output/tsv/sra_experiment-biosample.tsv has no timestamp file
-# File output/tsv/sra_experiment-biosample.tsv is created 6.392879099532222 days ago (will be updated when >5 days)
+# File output/tsv/sra_experiment-biosample.tsv is created 6.953174789301655 days ago (will be updated when >5 days)
## Update config/sra_experiment-biosample/config.yaml => output/tsv/sra_experiment-biosample.tsv
-< 2024-10-18T23:44:42 sra_experiment-biosample
+< 2024-10-25T22:40:46 sra_experiment-biosample
togoid-config config/sra_experiment-biosample update
# Success: output/tsv/sra_experiment-biosample.tsv is updated
-> 2024-10-18T23:48:11 sra_experiment-biosample
+> 2024-10-25T22:44:20 sra_experiment-biosample
Rule for TSV (output/tsv/sra_experiment-biosample.tsv)
------------------------------
Investigating output/tsv/sra_experiment-biosample.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:48:11 +0900
+timestamp: 2024-10-25 22:44:20 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-18 23:48:11 +0900)
-latest-prerequisite time: 2024-10-18 23:48:11 +0900
+--prepare:sra (2024-10-25 22:44:20 +0900)
+latest-prerequisite time: 2024-10-25 22:44:20 +0900
................................
### Update TSV for sra_experiment-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_experiment-sra_project.tsv is newer than config/sra_experiment-sra_project/config.yaml
# File output/tsv/sra_experiment-sra_project.tsv has no timestamp file
-# File output/tsv/sra_experiment-sra_project.tsv is created 6.393139851159491 days ago (will be updated when >5 days)
+# File output/tsv/sra_experiment-sra_project.tsv is created 6.953566052154005 days ago (will be updated when >5 days)
## Update config/sra_experiment-sra_project/config.yaml => output/tsv/sra_experiment-sra_project.tsv
-< 2024-10-18T23:48:11 sra_experiment-sra_project
+< 2024-10-25T22:44:20 sra_experiment-sra_project
togoid-config config/sra_experiment-sra_project update
# Success: output/tsv/sra_experiment-sra_project.tsv is updated
-> 2024-10-18T23:51:12 sra_experiment-sra_project
+> 2024-10-25T22:47:19 sra_experiment-sra_project
Rule for TSV (output/tsv/sra_experiment-sra_project.tsv)
------------------------------
Investigating output/tsv/sra_experiment-sra_project.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:51:12 +0900
+timestamp: 2024-10-25 22:47:19 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-18 23:51:12 +0900)
-latest-prerequisite time: 2024-10-18 23:51:12 +0900
+--prepare:sra (2024-10-25 22:47:19 +0900)
+latest-prerequisite time: 2024-10-25 22:47:19 +0900
................................
### Update TSV for sra_experiment-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_experiment-sra_sample.tsv is newer than config/sra_experiment-sra_sample/config.yaml
# File output/tsv/sra_experiment-sra_sample.tsv has no timestamp file
-# File output/tsv/sra_experiment-sra_sample.tsv is created 6.393115514560244 days ago (will be updated when >5 days)
+# File output/tsv/sra_experiment-sra_sample.tsv is created 6.9536083071334955 days ago (will be updated when >5 days)
## Update config/sra_experiment-sra_sample/config.yaml => output/tsv/sra_experiment-sra_sample.tsv
-< 2024-10-18T23:51:12 sra_experiment-sra_sample
+< 2024-10-25T22:47:19 sra_experiment-sra_sample
togoid-config config/sra_experiment-sra_sample update
# Success: output/tsv/sra_experiment-sra_sample.tsv is updated
-> 2024-10-18T23:54:08 sra_experiment-sra_sample
+> 2024-10-25T22:50:14 sra_experiment-sra_sample
Rule for TSV (output/tsv/sra_experiment-sra_sample.tsv)
------------------------------
Investigating output/tsv/sra_experiment-sra_sample.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:54:07 +0900
+timestamp: 2024-10-25 22:50:14 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-18 23:54:08 +0900)
-latest-prerequisite time: 2024-10-18 23:54:08 +0900
+--prepare:sra (2024-10-25 22:50:14 +0900)
+latest-prerequisite time: 2024-10-25 22:50:14 +0900
................................
### Update TSV for sra_project-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_project-bioproject.tsv is newer than config/sra_project-bioproject/config.yaml
# File output/tsv/sra_project-bioproject.tsv has no timestamp file
-# File output/tsv/sra_project-bioproject.tsv is created 6.3943325808183795 days ago (will be updated when >5 days)
+# File output/tsv/sra_project-bioproject.tsv is created 6.9548290149679515 days ago (will be updated when >5 days)
## Update config/sra_project-bioproject/config.yaml => output/tsv/sra_project-bioproject.tsv
-< 2024-10-18T23:54:08 sra_project-bioproject
+< 2024-10-25T22:50:14 sra_project-bioproject
togoid-config config/sra_project-bioproject update
# Success: output/tsv/sra_project-bioproject.tsv is updated
-> 2024-10-18T23:55:17 sra_project-bioproject
+> 2024-10-25T22:51:24 sra_project-bioproject
Rule for TSV (output/tsv/sra_project-bioproject.tsv)
------------------------------
Investigating output/tsv/sra_project-bioproject.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:55:17 +0900
+timestamp: 2024-10-25 22:51:24 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-18 23:55:17 +0900)
-latest-prerequisite time: 2024-10-18 23:55:17 +0900
+--prepare:sra (2024-10-25 22:51:24 +0900)
+latest-prerequisite time: 2024-10-25 22:51:24 +0900
................................
### Update TSV for sra_run-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_run-bioproject.tsv is newer than config/sra_run-bioproject/config.yaml
# File output/tsv/sra_run-bioproject.tsv has no timestamp file
-# File output/tsv/sra_run-bioproject.tsv is created 6.3921408920518985 days ago (will be updated when >5 days)
+# File output/tsv/sra_run-bioproject.tsv is created 6.95283442264765 days ago (will be updated when >5 days)
## Update config/sra_run-bioproject/config.yaml => output/tsv/sra_run-bioproject.tsv
-< 2024-10-18T23:55:17 sra_run-bioproject
+< 2024-10-25T22:51:24 sra_run-bioproject
togoid-config config/sra_run-bioproject update
# Success: output/tsv/sra_run-bioproject.tsv is updated
-> 2024-10-18T23:59:19 sra_run-bioproject
+> 2024-10-25T22:55:30 sra_run-bioproject
Rule for TSV (output/tsv/sra_run-bioproject.tsv)
------------------------------
Investigating output/tsv/sra_run-bioproject.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-18 23:59:19 +0900
+timestamp: 2024-10-25 22:55:30 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-18 23:59:19 +0900)
-latest-prerequisite time: 2024-10-18 23:59:19 +0900
+--prepare:sra (2024-10-25 22:55:30 +0900)
+latest-prerequisite time: 2024-10-25 22:55:30 +0900
................................
### Update TSV for sra_run-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_run-biosample.tsv is newer than config/sra_run-biosample/config.yaml
# File output/tsv/sra_run-biosample.tsv has no timestamp file
-# File output/tsv/sra_run-biosample.tsv is created 6.392103013228727 days ago (will be updated when >5 days)
+# File output/tsv/sra_run-biosample.tsv is created 6.9529597287318055 days ago (will be updated when >5 days)
## Update config/sra_run-biosample/config.yaml => output/tsv/sra_run-biosample.tsv
-< 2024-10-18T23:59:19 sra_run-biosample
+< 2024-10-25T22:55:30 sra_run-biosample
togoid-config config/sra_run-biosample update
# Success: output/tsv/sra_run-biosample.tsv is updated
-> 2024-10-19T00:03:14 sra_run-biosample
+> 2024-10-25T22:59:28 sra_run-biosample
Rule for TSV (output/tsv/sra_run-biosample.tsv)
------------------------------
Investigating output/tsv/sra_run-biosample.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-19 00:03:14 +0900
+timestamp: 2024-10-25 22:59:28 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-19 00:03:14 +0900)
-latest-prerequisite time: 2024-10-19 00:03:14 +0900
+--prepare:sra (2024-10-25 22:59:28 +0900)
+latest-prerequisite time: 2024-10-25 22:59:28 +0900
................................
### Update TSV for sra_run-sra_experiment if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_run-sra_experiment.tsv is newer than config/sra_run-sra_experiment/config.yaml
# File output/tsv/sra_run-sra_experiment.tsv has no timestamp file
-# File output/tsv/sra_run-sra_experiment.tsv is created 6.392404133104132 days ago (will be updated when >5 days)
+# File output/tsv/sra_run-sra_experiment.tsv is created 6.953576324235475 days ago (will be updated when >5 days)
## Update config/sra_run-sra_experiment/config.yaml => output/tsv/sra_run-sra_experiment.tsv
-< 2024-10-19T00:03:14 sra_run-sra_experiment
+< 2024-10-25T22:59:28 sra_run-sra_experiment
togoid-config config/sra_run-sra_experiment update
# Success: output/tsv/sra_run-sra_experiment.tsv is updated
-> 2024-10-19T00:06:19 sra_run-sra_experiment
+> 2024-10-25T23:02:39 sra_run-sra_experiment
Rule for TSV (output/tsv/sra_run-sra_experiment.tsv)
------------------------------
Investigating output/tsv/sra_run-sra_experiment.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-19 00:06:19 +0900
+timestamp: 2024-10-25 23:02:39 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-19 00:06:19 +0900)
-latest-prerequisite time: 2024-10-19 00:06:19 +0900
+--prepare:sra (2024-10-25 23:02:39 +0900)
+latest-prerequisite time: 2024-10-25 23:02:39 +0900
................................
### Update TSV for sra_run-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_run-sra_project.tsv is newer than config/sra_run-sra_project/config.yaml
# File output/tsv/sra_run-sra_project.tsv has no timestamp file
-# File output/tsv/sra_run-sra_project.tsv is created 6.392185624166389 days ago (will be updated when >5 days)
+# File output/tsv/sra_run-sra_project.tsv is created 6.953512854829733 days ago (will be updated when >5 days)
## Update config/sra_run-sra_project/config.yaml => output/tsv/sra_run-sra_project.tsv
-< 2024-10-19T00:06:19 sra_run-sra_project
+< 2024-10-25T23:02:39 sra_run-sra_project
togoid-config config/sra_run-sra_project update
# Success: output/tsv/sra_run-sra_project.tsv is updated
-> 2024-10-19T00:09:36 sra_run-sra_project
+> 2024-10-25T23:05:58 sra_run-sra_project
Rule for TSV (output/tsv/sra_run-sra_project.tsv)
------------------------------
Investigating output/tsv/sra_run-sra_project.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-19 00:09:36 +0900
+timestamp: 2024-10-25 23:05:58 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-19 00:09:36 +0900)
-latest-prerequisite time: 2024-10-19 00:09:36 +0900
+--prepare:sra (2024-10-25 23:05:58 +0900)
+latest-prerequisite time: 2024-10-25 23:05:58 +0900
................................
### Update TSV for sra_run-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_run-sra_sample.tsv is newer than config/sra_run-sra_sample/config.yaml
# File output/tsv/sra_run-sra_sample.tsv has no timestamp file
-# File output/tsv/sra_run-sra_sample.tsv is created 6.392020768705312 days ago (will be updated when >5 days)
+# File output/tsv/sra_run-sra_sample.tsv is created 6.953614879389513 days ago (will be updated when >5 days)
## Update config/sra_run-sra_sample/config.yaml => output/tsv/sra_run-sra_sample.tsv
-< 2024-10-19T00:09:36 sra_run-sra_sample
+< 2024-10-25T23:05:58 sra_run-sra_sample
togoid-config config/sra_run-sra_sample update
# Success: output/tsv/sra_run-sra_sample.tsv is updated
-> 2024-10-19T00:12:46 sra_run-sra_sample
+> 2024-10-25T23:09:09 sra_run-sra_sample
Rule for TSV (output/tsv/sra_run-sra_sample.tsv)
------------------------------
Investigating output/tsv/sra_run-sra_sample.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-19 00:12:46 +0900
+timestamp: 2024-10-25 23:09:09 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-19 00:12:46 +0900)
-latest-prerequisite time: 2024-10-19 00:12:46 +0900
+--prepare:sra (2024-10-25 23:09:09 +0900)
+latest-prerequisite time: 2024-10-25 23:09:09 +0900
................................
### Update TSV for sra_sample-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/sra_sample-biosample.tsv is newer than config/sra_sample-biosample/config.yaml
# File output/tsv/sra_sample-biosample.tsv has no timestamp file
-# File output/tsv/sra_sample-biosample.tsv is created 6.3919281000433905 days ago (will be updated when >5 days)
+# File output/tsv/sra_sample-biosample.tsv is created 6.953646382877175 days ago (will be updated when >5 days)
## Update config/sra_sample-biosample/config.yaml => output/tsv/sra_sample-biosample.tsv
-< 2024-10-19T00:12:46 sra_sample-biosample
+< 2024-10-25T23:09:09 sra_sample-biosample
togoid-config config/sra_sample-biosample update
# Success: output/tsv/sra_sample-biosample.tsv is updated
-> 2024-10-19T00:15:54 sra_sample-biosample
+> 2024-10-25T23:12:18 sra_sample-biosample
Rule for TSV (output/tsv/sra_sample-biosample.tsv)
------------------------------
Investigating output/tsv/sra_sample-biosample.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-19 00:15:54 +0900
+timestamp: 2024-10-25 23:12:18 +0900
pre-requisites:
--output/tsv/ ()
---prepare:sra (2024-10-19 00:15:54 +0900)
-latest-prerequisite time: 2024-10-19 00:15:54 +0900
+--prepare:sra (2024-10-25 23:12:18 +0900)
+latest-prerequisite time: 2024-10-25 23:12:18 +0900
................................
### Update TSV for swisslipids-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/swisslipids-chebi.tsv is newer than config/swisslipids-chebi/config.yaml
# File output/tsv/swisslipids-chebi.tsv is older than input/swisslipids/download.lock
## Update config/swisslipids-chebi/config.yaml => output/tsv/swisslipids-chebi.tsv
-< 2024-10-19T00:15:54 swisslipids-chebi
+< 2024-10-25T23:12:18 swisslipids-chebi
togoid-config config/swisslipids-chebi update
# Success: output/tsv/swisslipids-chebi.tsv is updated
-> 2024-10-19T00:16:08 swisslipids-chebi
+> 2024-10-25T23:12:32 swisslipids-chebi
Rule for TSV (output/tsv/swisslipids-chebi.tsv)
------------------------------
Investigating output/tsv/swisslipids-chebi.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-19 00:16:08 +0900
+timestamp: 2024-10-25 23:12:32 +0900
pre-requisites:
--output/tsv/ ()
---prepare:swisslipids (2024-10-19 00:16:08 +0900)
-latest-prerequisite time: 2024-10-19 00:16:08 +0900
+--prepare:swisslipids (2024-10-25 23:12:32 +0900)
+latest-prerequisite time: 2024-10-25 23:12:32 +0900
................................
### Update TSV for swisslipids-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/swisslipids-hmdb.tsv is newer than config/swisslipids-hmdb/config.yaml
# File output/tsv/swisslipids-hmdb.tsv is older than input/swisslipids/download.lock
## Update config/swisslipids-hmdb/config.yaml => output/tsv/swisslipids-hmdb.tsv
-< 2024-10-19T00:16:08 swisslipids-hmdb
+< 2024-10-25T23:12:32 swisslipids-hmdb
togoid-config config/swisslipids-hmdb update
# Success: output/tsv/swisslipids-hmdb.tsv is updated
-> 2024-10-19T00:16:22 swisslipids-hmdb
+> 2024-10-25T23:12:46 swisslipids-hmdb
Rule for TSV (output/tsv/swisslipids-hmdb.tsv)
------------------------------
Investigating output/tsv/swisslipids-hmdb.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-19 00:16:22 +0900
+timestamp: 2024-10-25 23:12:46 +0900
pre-requisites:
--output/tsv/ ()
---prepare:swisslipids (2024-10-19 00:16:22 +0900)
-latest-prerequisite time: 2024-10-19 00:16:22 +0900
+--prepare:swisslipids (2024-10-25 23:12:46 +0900)
+latest-prerequisite time: 2024-10-25 23:12:46 +0900
................................
### Update TSV for swisslipids-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/swisslipids-inchi_key.tsv is newer than config/swisslipids-inchi_key/config.yaml
# File output/tsv/swisslipids-inchi_key.tsv is older than input/swisslipids/download.lock
## Update config/swisslipids-inchi_key/config.yaml => output/tsv/swisslipids-inchi_key.tsv
-< 2024-10-19T00:16:22 swisslipids-inchi_key
+< 2024-10-25T23:12:46 swisslipids-inchi_key
togoid-config config/swisslipids-inchi_key update
# Success: output/tsv/swisslipids-inchi_key.tsv is updated
-> 2024-10-19T00:16:34 swisslipids-inchi_key
+> 2024-10-25T23:12:58 swisslipids-inchi_key
Rule for TSV (output/tsv/swisslipids-inchi_key.tsv)
------------------------------
Investigating output/tsv/swisslipids-inchi_key.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-19 00:16:34 +0900
+timestamp: 2024-10-25 23:12:58 +0900
pre-requisites:
--output/tsv/ ()
---prepare:swisslipids (2024-10-19 00:16:34 +0900)
-latest-prerequisite time: 2024-10-19 00:16:34 +0900
+--prepare:swisslipids (2024-10-25 23:12:58 +0900)
+latest-prerequisite time: 2024-10-25 23:12:58 +0900
................................
### Update TSV for taxonomy-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/taxonomy-pubmed.tsv is newer than config/taxonomy-pubmed/config.yaml
# File output/tsv/taxonomy-pubmed.tsv is older than input/taxonomy/download.lock
## Update config/taxonomy-pubmed/config.yaml => output/tsv/taxonomy-pubmed.tsv
-< 2024-10-19T00:16:34 taxonomy-pubmed
+< 2024-10-25T23:12:58 taxonomy-pubmed
togoid-config config/taxonomy-pubmed update
awk: cmd. line:1: warning: escape sequence `\|' treated as plain `|'
# Success: output/tsv/taxonomy-pubmed.tsv is updated
-> 2024-10-19T00:16:35 taxonomy-pubmed
+> 2024-10-25T23:12:59 taxonomy-pubmed
Rule for TSV (output/tsv/taxonomy-pubmed.tsv)
------------------------------
Investigating output/tsv/taxonomy-pubmed.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-19 00:16:35 +0900
+timestamp: 2024-10-25 23:12:59 +0900
pre-requisites:
--output/tsv/ ()
---prepare:taxonomy (2024-10-19 00:16:35 +0900)
-latest-prerequisite time: 2024-10-19 00:16:35 +0900
+--prepare:taxonomy (2024-10-25 23:12:59 +0900)
+latest-prerequisite time: 2024-10-25 23:12:59 +0900
................................
### Update TSV for togovar-clinvar if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/togovar-clinvar.tsv is newer than config/togovar-clinvar/config.yaml
# File output/tsv/togovar-clinvar.tsv has no timestamp file
-# File output/tsv/togovar-clinvar.tsv is created 11.882487612230358 days ago (will be updated when >5 days)
+# File output/tsv/togovar-clinvar.tsv is created 6.955055471013969 days ago (will be updated when >5 days)
## Update config/togovar-clinvar/config.yaml => output/tsv/togovar-clinvar.tsv
-< 2024-10-19T00:16:35 togovar-clinvar
+< 2024-10-25T23:12:59 togovar-clinvar
togoid-config config/togovar-clinvar update
# Success: output/tsv/togovar-clinvar.tsv is updated
-> 2024-10-19T00:17:42 togovar-clinvar
+> 2024-10-25T23:13:58 togovar-clinvar
Rule for TSV (output/tsv/togovar-clinvar.tsv)
------------------------------
Investigating output/tsv/togovar-clinvar.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-19 00:17:42 +0900
+timestamp: 2024-10-25 23:13:58 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for togovar-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/togovar-dbsnp.tsv is newer than config/togovar-dbsnp/config.yaml
# File output/tsv/togovar-dbsnp.tsv has no timestamp file
-# File output/tsv/togovar-dbsnp.tsv is created 11.882837464437754 days ago (will be updated when >5 days)
+# File output/tsv/togovar-dbsnp.tsv is created 6.955348530745221 days ago (will be updated when >5 days)
## Update config/togovar-dbsnp/config.yaml => output/tsv/togovar-dbsnp.tsv
-< 2024-10-19T00:17:42 togovar-dbsnp
+< 2024-10-25T23:13:58 togovar-dbsnp
togoid-config config/togovar-dbsnp update
# Success: output/tsv/togovar-dbsnp.tsv is updated
-> 2024-10-19T00:18:16 togovar-dbsnp
+> 2024-10-25T23:14:35 togovar-dbsnp
Rule for TSV (output/tsv/togovar-dbsnp.tsv)
------------------------------
Investigating output/tsv/togovar-dbsnp.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-19 00:18:16 +0900
+timestamp: 2024-10-25 23:14:34 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for togovar-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/togovar-ensembl_gene.tsv is newer than config/togovar-ensembl_gene/config.yaml
# File output/tsv/togovar-ensembl_gene.tsv has no timestamp file
-# File output/tsv/togovar-ensembl_gene.tsv is created 11.882809153306955 days ago (will be updated when >5 days)
+# File output/tsv/togovar-ensembl_gene.tsv is created 6.955335645105359 days ago (will be updated when >5 days)
## Update config/togovar-ensembl_gene/config.yaml => output/tsv/togovar-ensembl_gene.tsv
-< 2024-10-19T00:18:16 togovar-ensembl_gene
+< 2024-10-25T23:14:35 togovar-ensembl_gene
togoid-config config/togovar-ensembl_gene update
# Success: output/tsv/togovar-ensembl_gene.tsv is updated
-> 2024-10-19T00:18:54 togovar-ensembl_gene
+> 2024-10-25T23:15:14 togovar-ensembl_gene
Rule for TSV (output/tsv/togovar-ensembl_gene.tsv)
------------------------------
Investigating output/tsv/togovar-ensembl_gene.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-19 00:18:54 +0900
+timestamp: 2024-10-25 23:15:14 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for togovar-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/togovar-ensembl_transcript.tsv is newer than config/togovar-ensembl_transcript/config.yaml
# File output/tsv/togovar-ensembl_transcript.tsv has no timestamp file
-# File output/tsv/togovar-ensembl_transcript.tsv is created 11.88156610611962 days ago (will be updated when >5 days)
+# File output/tsv/togovar-ensembl_transcript.tsv is created 6.9539677756058 days ago (will be updated when >5 days)
## Update config/togovar-ensembl_transcript/config.yaml => output/tsv/togovar-ensembl_transcript.tsv
-< 2024-10-19T00:18:54 togovar-ensembl_transcript
+< 2024-10-25T23:15:14 togovar-ensembl_transcript
togoid-config config/togovar-ensembl_transcript update
# Success: output/tsv/togovar-ensembl_transcript.tsv is updated
-> 2024-10-19T00:21:31 togovar-ensembl_transcript
+> 2024-10-25T23:17:49 togovar-ensembl_transcript
Rule for TSV (output/tsv/togovar-ensembl_transcript.tsv)
------------------------------
Investigating output/tsv/togovar-ensembl_transcript.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-19 00:21:31 +0900
+timestamp: 2024-10-25 23:17:49 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for togovar-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/togovar-hgnc.tsv is newer than config/togovar-hgnc/config.yaml
# File output/tsv/togovar-hgnc.tsv has no timestamp file
-# File output/tsv/togovar-hgnc.tsv is created 11.883117809181678 days ago (will be updated when >5 days)
+# File output/tsv/togovar-hgnc.tsv is created 6.955485134356031 days ago (will be updated when >5 days)
## Update config/togovar-hgnc/config.yaml => output/tsv/togovar-hgnc.tsv
-< 2024-10-19T00:21:31 togovar-hgnc
+< 2024-10-25T23:17:49 togovar-hgnc
togoid-config config/togovar-hgnc update
# Success: output/tsv/togovar-hgnc.tsv is updated
-> 2024-10-19T00:21:56 togovar-hgnc
+> 2024-10-25T23:18:13 togovar-hgnc
Rule for TSV (output/tsv/togovar-hgnc.tsv)
------------------------------
Investigating output/tsv/togovar-hgnc.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-19 00:21:56 +0900
+timestamp: 2024-10-25 23:18:13 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for togovar-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/togovar-ncbigene.tsv is newer than config/togovar-ncbigene/config.yaml
# File output/tsv/togovar-ncbigene.tsv has no timestamp file
-# File output/tsv/togovar-ncbigene.tsv is created 11.883138601933716 days ago (will be updated when >5 days)
+# File output/tsv/togovar-ncbigene.tsv is created 6.955484939587848 days ago (will be updated when >5 days)
## Update config/togovar-ncbigene/config.yaml => output/tsv/togovar-ncbigene.tsv
-< 2024-10-19T00:21:56 togovar-ncbigene
+< 2024-10-25T23:18:13 togovar-ncbigene
togoid-config config/togovar-ncbigene update
# Success: output/tsv/togovar-ncbigene.tsv is updated
-> 2024-10-19T00:22:19 togovar-ncbigene
+> 2024-10-25T23:18:36 togovar-ncbigene
Rule for TSV (output/tsv/togovar-ncbigene.tsv)
------------------------------
Investigating output/tsv/togovar-ncbigene.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-19 00:22:19 +0900
+timestamp: 2024-10-25 23:18:36 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for togovar-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/togovar-pubmed.tsv is newer than config/togovar-pubmed/config.yaml
# File output/tsv/togovar-pubmed.tsv has no timestamp file
-# File output/tsv/togovar-pubmed.tsv is created 11.883397424305718 days ago (will be updated when >5 days)
+# File output/tsv/togovar-pubmed.tsv is created 6.955743460025277 days ago (will be updated when >5 days)
## Update config/togovar-pubmed/config.yaml => output/tsv/togovar-pubmed.tsv
-< 2024-10-19T00:22:19 togovar-pubmed
+< 2024-10-25T23:18:36 togovar-pubmed
togoid-config config/togovar-pubmed update
# Success: output/tsv/togovar-pubmed.tsv is updated
-> 2024-10-19T00:22:19 togovar-pubmed
+> 2024-10-25T23:18:36 togovar-pubmed
Rule for TSV (output/tsv/togovar-pubmed.tsv)
------------------------------
Investigating output/tsv/togovar-pubmed.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-19 00:22:19 +0900
+timestamp: 2024-10-25 23:18:36 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for togovar-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/togovar-refseq_rna.tsv is newer than config/togovar-refseq_rna/config.yaml
# File output/tsv/togovar-refseq_rna.tsv has no timestamp file
-# File output/tsv/togovar-refseq_rna.tsv is created 11.882439278388137 days ago (will be updated when >5 days)
+# File output/tsv/togovar-refseq_rna.tsv is created 6.954663361456515 days ago (will be updated when >5 days)
## Update config/togovar-refseq_rna/config.yaml => output/tsv/togovar-refseq_rna.tsv
-< 2024-10-19T00:22:19 togovar-refseq_rna
+< 2024-10-25T23:18:36 togovar-refseq_rna
togoid-config config/togovar-refseq_rna update
# Success: output/tsv/togovar-refseq_rna.tsv is updated
-> 2024-10-19T00:23:54 togovar-refseq_rna
+> 2024-10-25T23:20:04 togovar-refseq_rna
Rule for TSV (output/tsv/togovar-refseq_rna.tsv)
------------------------------
Investigating output/tsv/togovar-refseq_rna.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-19 00:23:54 +0900
+timestamp: 2024-10-25 23:20:04 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for uberon-ncit_tissue if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/uberon-ncit_tissue.tsv is newer than config/uberon-ncit_tissue/config.yaml
# File output/tsv/uberon-ncit_tissue.tsv has no timestamp file
-# File output/tsv/uberon-ncit_tissue.tsv is created 11.883508161613877 days ago (will be updated when >5 days)
+# File output/tsv/uberon-ncit_tissue.tsv is created 6.955649191060208 days ago (will be updated when >5 days)
## Update config/uberon-ncit_tissue/config.yaml => output/tsv/uberon-ncit_tissue.tsv
-< 2024-10-19T00:23:54 uberon-ncit_tissue
+< 2024-10-25T23:20:04 uberon-ncit_tissue
togoid-config config/uberon-ncit_tissue update
# Success: output/tsv/uberon-ncit_tissue.tsv is updated
-> 2024-10-19T00:23:56 uberon-ncit_tissue
+> 2024-10-25T23:20:07 uberon-ncit_tissue
Rule for TSV (output/tsv/uberon-ncit_tissue.tsv)
------------------------------
Investigating output/tsv/uberon-ncit_tissue.tsv
class: Rake::FileTask
task needed: false
-timestamp: 2024-10-19 00:23:56 +0900
+timestamp: 2024-10-25 23:20:07 +0900
pre-requisites:
--output/tsv/ ()
---input/update.txt (2024-10-18 20:16:23 +0900)
-latest-prerequisite time: 2024-10-18 20:16:23 +0900
+--input/update.txt (2024-10-25 20:14:52 +0900)
+latest-prerequisite time: 2024-10-25 20:14:52 +0900
................................
### Update TSV for uniprot-chembl_target if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5484,8 +5201,8 @@ task needed: true
timestamp: 2024-10-07 03:49:45 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5500,8 +5217,8 @@ task needed: true
timestamp: 2024-10-07 03:50:14 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5516,8 +5233,8 @@ task needed: true
timestamp: 2024-10-07 04:41:06 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5532,8 +5249,8 @@ task needed: true
timestamp: 2024-10-07 05:28:14 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5548,8 +5265,8 @@ task needed: true
timestamp: 2024-10-07 06:14:28 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5564,8 +5281,8 @@ task needed: true
timestamp: 2024-10-07 07:01:01 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5580,8 +5297,8 @@ task needed: true
timestamp: 2024-10-07 07:19:03 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5596,8 +5313,8 @@ task needed: true
timestamp: 2024-10-07 07:57:17 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5612,8 +5329,8 @@ task needed: true
timestamp: 2024-10-07 08:43:29 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-intact if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5628,8 +5345,8 @@ task needed: true
timestamp: 2024-10-07 08:45:13 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5644,8 +5361,8 @@ task needed: true
timestamp: 2024-10-07 09:23:48 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-oma_group if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5660,8 +5377,8 @@ task needed: true
timestamp: 2024-10-07 10:02:59 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5676,8 +5393,8 @@ task needed: true
timestamp: 2024-10-07 10:03:07 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5692,8 +5409,8 @@ task needed: true
timestamp: 2024-10-07 10:03:10 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5708,8 +5425,8 @@ task needed: true
timestamp: 2024-10-07 10:49:35 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5724,8 +5441,8 @@ task needed: true
timestamp: 2024-10-07 11:28:15 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5740,8 +5457,8 @@ task needed: true
timestamp: 2024-10-07 12:14:19 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5756,8 +5473,8 @@ task needed: true
timestamp: 2024-10-07 12:53:40 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5772,8 +5489,8 @@ task needed: true
timestamp: 2024-10-07 13:26:44 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot-uniprot_mnemonic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false
@@ -5788,83 +5505,83 @@ task needed: true
timestamp: 2024-10-07 14:21:31 +0900
pre-requisites:
--output/tsv/ ()
---prepare:uniprot (2024-10-19 00:23:56 +0900)
-latest-prerequisite time: 2024-10-19 00:23:56 +0900
+--prepare:uniprot (2024-10-25 23:20:07 +0900)
+latest-prerequisite time: 2024-10-25 23:20:07 +0900
................................
### Update TSV for uniprot_reference_proteome-assembly_insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true
# File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is newer than config/uniprot_reference_proteome-assembly_insdc/config.yaml
# File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv has no timestamp file
-# File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is created 11.418331425665059 days ago (will be updated when >5 days)
+# File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is created 6.95567779268103 days ago (will be updated when >5 days)
## Update config/uniprot_reference_proteome-assembly_insdc/config.yaml => output/tsv/uniprot_reference_proteome-assembly_insdc.tsv
-< 2024-10-19T00:23:56 uniprot_reference_proteome-assembly_insdc
+< 2024-10-25T23:20:07 uniprot_reference_proteome-assembly_insdc
togoid-config config/uniprot_reference_proteome-assembly_insdc update
# Success: output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is updated
-> 2024-10-19T00:23:57 uniprot_reference_proteome-assembly_insdc
+> 2024-10-25T23:20:08 uniprot_reference_proteome-assembly_insdc
Rule for TSV (output/tsv/uniprot_reference_proteome-assembly_insdc.tsv)
------------------------------
Investigating output/tsv/uniprot_reference_proteome-assembly_insdc.tsv
class: Rake::FileTask
task needed: true
-timestamp: 2024-10-19 00:23:57 +0900
+timestamp: 2024-10-25 23:20:08 +0900
pre-requisites:
--output/tsv/ (