diff --git a/docs/help.md b/docs/help.md index 9b59eeae..64738079 100644 --- a/docs/help.md +++ b/docs/help.md @@ -1,5 +1,5 @@ # TogoID ver. 1.1 -Datasets last updated: 2024-05-29 +Datasets last updated: 2024-06-06 ## About - [TogoID](https://togoid.dbcls.jp/) is an ID conversion service implementing unique features with an intuitive web interface and an API for programmatic access. TogoID supports datasets from various biological categories such as gene, protein, chemical compound, pathway, disease, etc. TogoID users can perform exploratory multistep conversions to find a path among IDs. To guide the interpretation of biological meanings in the conversions, we crafted an [ontology](https://togoid.dbcls.jp/ontology) that defines the semantics of the dataset relations. @@ -22,7 +22,7 @@ Shuya Ikeda, Hiromasa Ono, Tazro Ohta, Hirokazu Chiba, Yuki Naito, Yuki Moriya, - [API Documentation (Swagger)](https://togoid.dbcls.jp/apidoc/) -## Statistics (as of 2024-05-29) +## Statistics (as of 2024-06-06) - Number of target datasets - 103 (from 72 databases) - For details on the target DBs and ID examples, please refer to the "DATASETS" tab. diff --git a/docs/help_ja.md b/docs/help_ja.md index 20af1a39..01b17d2f 100644 --- a/docs/help_ja.md +++ b/docs/help_ja.md @@ -1,5 +1,5 @@ # TogoID ver. 1.1 -Datasets last updated: 2024-05-29 +Datasets last updated: 2024-06-06 ## About - [TogoID](https://togoid.dbcls.jp/) は、直感的なインターフェースにより生命科学系データベース(DB)間のつながりを探索的に確認しながらID変換を行うことができるウェブアプリケーションです。同一の実体を指すID間の変換だけでなく、関連する別のカテゴリーのIDへの変換も可能です。また、直接リンクされていないDBのID間でも、他のDBを経由した変換を探索することができます。 @@ -28,7 +28,7 @@ Datasets last updated: 2024-05-29 - [API Documentation (Swagger)](https://togoid.dbcls.jp/apidoc/) -## 統計 (2024-05-29) +## 統計 (2024-06-06) - 対象データセット数 - 103 (72のデータベースに由来) - 対象DBの詳細やID例については、"DATASETS" タブ からご覧いただけます。 diff --git a/docs/news.md b/docs/news.md index db4e2bb3..30f2e282 100644 --- a/docs/news.md +++ b/docs/news.md @@ -1,3 +1,6 @@ +# 2024-06-06 +- Weekly update has been completed. + # 2024-05-29 - Weekly update has been completed. diff --git a/log/error.log b/log/error.log index 04907f40..ffb72bcd 100644 --- a/log/error.log +++ b/log/error.log @@ -3,5 +3,17 @@ Error: Remote file is empty # Error: output/tsv/chembl_target-ensembl_gene.tsv new file size per old 0 / 61845 = 0.0 < 0.5 # Error: Failed to create output/tsv/chembl_target-ensembl_gene.tsv or created file was empty # Error: output/tsv/glytoucan-doid.tsv new file size per old 1596 / 4376 = 0.3647166361974406 < 0.5 +# Error: output/tsv/mondo-doid.tsv new file size per old 0 / 155460 = 0.0 < 0.5 +# Error: Failed to create output/tsv/mondo-doid.tsv or created file was empty +# Error: output/tsv/mondo-hp_phenotype.tsv new file size per old 0 / 9184 = 0.0 < 0.5 +# Error: Failed to create output/tsv/mondo-hp_phenotype.tsv or created file was empty +# Error: output/tsv/mondo-meddra.tsv new file size per old 0 / 25262 = 0.0 < 0.5 +# Error: Failed to create output/tsv/mondo-meddra.tsv or created file was empty +# Error: output/tsv/mondo-mesh.tsv new file size per old 0 / 133836 = 0.0 < 0.5 +# Error: Failed to create output/tsv/mondo-mesh.tsv or created file was empty +# Error: output/tsv/mondo-omim_phenotype.tsv new file size per old 0 / 145395 = 0.0 < 0.5 +# Error: Failed to create output/tsv/mondo-omim_phenotype.tsv or created file was empty +# Error: output/tsv/mondo-orphanet_phenotype.tsv new file size per old 0 / 146923 = 0.0 < 0.5 +# Error: Failed to create output/tsv/mondo-orphanet_phenotype.tsv or created file was empty # Error: output/tsv/wikipathways-chebi.tsv new file size per old 69817 / 148433 = 0.47036036460894814 < 0.5 # Error: output/tsv/wikipathways-uniprot.tsv new file size per old 57944 / 470542 = 0.12314309880945803 < 0.5 diff --git a/log/pair_count.tsv b/log/pair_count.tsv index 1c686be7..8316c08d 100644 --- a/log/pair_count.tsv +++ b/log/pair_count.tsv @@ -1,13 +1,13 @@ affy_probeset-ncbigene.tsv 19063 -assembly_insdc-bioproject.tsv 2257414 -assembly_insdc-biosample.tsv 2201866 -assembly_insdc-insdc_master.tsv 2126832 +assembly_insdc-bioproject.tsv 2269215 +assembly_insdc-biosample.tsv 2212826 +assembly_insdc-insdc_master.tsv 2137497 bioproject-biosample.tsv 2546485 -bioproject-geo_series.tsv 208710 -bioproject-pubmed.tsv 270271 +bioproject-geo_series.tsv 209067 +bioproject-pubmed.tsv 270670 bioproject_umbrella-bioproject.tsv 104586 -biosample-bioproject.tsv 18715693 -biosample-geo_sample.tsv 9074826 +biosample-bioproject.tsv 18755430 +biosample-geo_sample.tsv 9081138 cellosaurus-ncit_disease.tsv 71772 cellosaurus-orphanet_phenotype.tsv 39956 chebi-inchi_key.tsv 175447 @@ -77,18 +77,18 @@ insdc-bioproject.tsv 59409158 insdc-biosample.tsv 193975949 insdc_master-bioproject.tsv 1533582 insdc_master-biosample.tsv 1533178 -interpro-go.tsv 30340 -interpro-pdb.tsv 1554325 -interpro-pfam.tsv 20197 +interpro-go.tsv 30300 +interpro-pdb.tsv 1591525 +interpro-pfam.tsv 20725 interpro-prosite.tsv 1283 -interpro-pubmed.tsv 110966 -interpro-reactome_pathway.tsv 464216 -interpro-smart.tsv 1275 -interpro-uniprot.tsv 769495433 +interpro-pubmed.tsv 112259 +interpro-reactome_pathway.tsv 469324 +interpro-smart.tsv 1274 +interpro-uniprot.tsv 756717820 jga_study-jga_dataset.tsv 199 jga_study-nbdc_human_db.tsv 305 jga_study-pubmed.tsv 130 -lipidmaps-chebi.tsv 12914 +lipidmaps-chebi.tsv 12915 lipidmaps-inchi_key.tsv 48021 lipidmaps-swisslipids.tsv 12348 mbgd_gene-uniprot.tsv 137319849 @@ -101,12 +101,12 @@ medgen-omim_phenotype.tsv 11043 medgen-orphanet_phenotype.tsv 9063 mgi_gene-ensembl_gene.tsv 56432 mgi_gene-hgnc.tsv 24587 -mgi_gene-mgi_allele.tsv 108940 +mgi_gene-mgi_allele.tsv 109003 mgi_gene-ncbigene.tsv 55039 mgi_gene-uniprot.tsv 79233 -mgi_genotype-doid.tsv 7806 -mgi_genotype-mgi_allele.tsv 123869 -mgi_genotype-mp.tsv 398348 +mgi_genotype-doid.tsv 7810 +mgi_genotype-mgi_allele.tsv 123933 +mgi_genotype-mp.tsv 398536 mondo-doid.tsv 10712 mondo-hp_phenotype.tsv 574 mondo-meddra.tsv 1486 @@ -114,22 +114,22 @@ mondo-mesh.tsv 8352 mondo-omim_phenotype.tsv 9693 mondo-orphanet_phenotype.tsv 10380 nando-mondo.tsv 2390 -ncbigene-ensembl_gene.tsv 10550874 -ncbigene-ensembl_protein.tsv 12333211 -ncbigene-ensembl_transcript.tsv 12902456 +ncbigene-ensembl_gene.tsv 10810327 +ncbigene-ensembl_protein.tsv 12612609 +ncbigene-ensembl_transcript.tsv 13223731 ncbigene-flybase_gene.tsv 25078 -ncbigene-go.tsv 95956265 +ncbigene-go.tsv 96036753 ncbigene-hgnc.tsv 43777 ncbigene-mgi_gene.tsv 71686 ncbigene-mirbase.tsv 17541 -ncbigene-omim_gene.tsv 18514 -ncbigene-refseq_genomic.tsv 211743 -ncbigene-refseq_protein.tsv 64268565 -ncbigene-refseq_rna.tsv 62980257 +ncbigene-omim_gene.tsv 18520 +ncbigene-refseq_genomic.tsv 211742 +ncbigene-refseq_protein.tsv 64337032 +ncbigene-refseq_rna.tsv 63029318 ncbigene-rgd.tsv 47293 ncbigene-sgd.tsv 6464 ncbigene-tair.tsv 32835 -ncbigene-taxonomy.tsv 52874459 +ncbigene-taxonomy.tsv 52932438 ncbigene-vgnc.tsv 112122 ncbigene-wormbase_gene.tsv 19848 ncbigene-xenbase_gene.tsv 46792 @@ -152,13 +152,13 @@ pdb-interpro.tsv 726658 pdb-pdb_ccd.tsv 530587 pdb-pfam.tsv 339565 pdb-uniprot.tsv 341431 -prosite-prosite_prorule.tsv 1450 +prosite-prosite_prorule.tsv 1452 pubchem_compound-atc.tsv 4965 pubchem_compound-chebi.tsv 174843 pubchem_compound-chembl_compound.tsv 2372556 pubchem_compound-drugbank.tsv 10789 pubchem_compound-glytoucan.tsv 69203 -pubchem_compound-inchi_key.tsv 118049971 +pubchem_compound-inchi_key.tsv 118052227 pubchem_pathway-ncbigene.tsv 33861 pubchem_pathway-pathbank.tsv 69387 pubchem_pathway-pubchem_compound.tsv 1253395 @@ -186,32 +186,32 @@ refseq_rna-refseq_protein.tsv 54154462 refseq_rna-taxonomy.tsv 62348147 rhea-chebi.tsv 206037 rhea-ec.tsv 7598 -rhea-go.tsv 4414 +rhea-go.tsv 4429 rhea-pubmed.tsv 138072 rhea-reactome_reaction.tsv 1480 -rhea-uniprot.tsv 41622619 -sra_accession-bioproject.tsv 500356 -sra_accession-biosample.tsv 29863488 +rhea-uniprot.tsv 40452196 +sra_accession-bioproject.tsv 500713 +sra_accession-biosample.tsv 29894648 sra_accession-sra_analysis.tsv 329141 -sra_accession-sra_experiment.tsv 32984291 -sra_accession-sra_project.tsv 581607 -sra_accession-sra_run.tsv 37637535 -sra_accession-sra_sample.tsv 32172339 -sra_experiment-bioproject.tsv 28809975 -sra_experiment-biosample.tsv 29153854 -sra_experiment-sra_project.tsv 29154115 -sra_experiment-sra_sample.tsv 29153947 -sra_project-bioproject.tsv 503746 -sra_run-bioproject.tsv 30657856 -sra_run-biosample.tsv 30950442 -sra_run-sra_experiment.tsv 31040243 -sra_run-sra_project.tsv 31014770 -sra_run-sra_sample.tsv 30950540 -sra_sample-biosample.tsv 29881118 +sra_accession-sra_experiment.tsv 33069706 +sra_accession-sra_project.tsv 582908 +sra_accession-sra_run.tsv 37725549 +sra_accession-sra_sample.tsv 32244776 +sra_experiment-bioproject.tsv 28847508 +sra_experiment-biosample.tsv 29191261 +sra_experiment-sra_project.tsv 29191648 +sra_experiment-sra_sample.tsv 29191480 +sra_project-bioproject.tsv 504103 +sra_run-bioproject.tsv 30695410 +sra_run-biosample.tsv 30987870 +sra_run-sra_experiment.tsv 31077797 +sra_run-sra_project.tsv 31052324 +sra_run-sra_sample.tsv 30988094 +sra_sample-biosample.tsv 29912817 swisslipids-chebi.tsv 4276 swisslipids-hmdb.tsv 26026 swisslipids-inchi_key.tsv 593209 -taxonomy-pubmed.tsv 49795 +taxonomy-pubmed.tsv 49849 togovar-clinvar.tsv 401823 togovar-dbsnp.tsv 66877211 togovar-ensembl_gene.tsv 72473309 @@ -225,29 +225,29 @@ uberon-ncit_tissue.tsv 2578 uniprot-chembl_target.tsv 10144 uniprot-dbsnp.tsv 65716 uniprot-ec.tsv 39722925 -uniprot-ensembl_gene.tsv 9485822 -uniprot-ensembl_protein.tsv 9698736 -uniprot-ensembl_transcript.tsv 9698736 -uniprot-go.tsv 476606489 -uniprot-hgnc.tsv 81675 -uniprot-insdc.tsv 266643040 +uniprot-ensembl_gene.tsv 9494738 +uniprot-ensembl_protein.tsv 9709163 +uniprot-ensembl_transcript.tsv 9709163 +uniprot-go.tsv 606663709 +uniprot-hgnc.tsv 81713 +uniprot-insdc.tsv 260791472 uniprot-intact.tsv 230595 -uniprot-ncbigene.tsv 13529658 -uniprot-oma_group.tsv 7771800 +uniprot-ncbigene.tsv 12810580 +uniprot-oma_group.tsv 7668829 uniprot-omim_gene.tsv 16188 uniprot-omim_phenotype.tsv 7077 -uniprot-orphanet_phenotype.tsv 8177 -uniprot-pdb.tsv 370031 -uniprot-reactome_pathway.tsv 260444 -uniprot_reference_proteome-assembly_insdc.tsv 475892 -uniprot_reference_proteome-assembly_refseq.tsv 194 -uniprot_reference_proteome-taxonomy.tsv 544084 -uniprot-refseq_protein.tsv 47937966 -uniprot-uniprot_mnemonic.tsv 248805733 +uniprot-orphanet_phenotype.tsv 8178 +uniprot-pdb.tsv 377848 +uniprot-reactome_pathway.tsv 282077 +uniprot_reference_proteome-assembly_insdc.tsv 571530 +uniprot_reference_proteome-assembly_refseq.tsv 193 +uniprot_reference_proteome-taxonomy.tsv 639722 +uniprot-refseq_protein.tsv 45084699 +uniprot-uniprot_mnemonic.tsv 245482527 wikipathways-chebi.tsv 11471 wikipathways-doid.tsv 1060 wikipathways-hmdb.tsv 4116 wikipathways-lipidmaps.tsv 1418 wikipathways-ncbigene.tsv 30222 wikipathways-uniprot.tsv 33518 -total 4791824296 +total 4897225406 diff --git a/log/pair_count_history.tsv b/log/pair_count_history.tsv index 033f75ab..873b46db 100644 --- a/log/pair_count_history.tsv +++ b/log/pair_count_history.tsv @@ -40,3 +40,4 @@ Date affy_probeset-ncbigene assembly_insdc-bioproject assembly_insdc-biosample a 2024-05-11 19063 2248166 2192685 2118114 2546485 207850 269450 104586 18584288 9037022 71772 39956 175447 34347 3101919 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 8272 1711989 115826 3340026 4019 4849 5671 55589 12969337 15910019 47792 14749031 5546630 12969340 229689 55211171 241612 40165483 141 5046 290 1270 50841 35219 1995 40970 43667 21167 1325 23383 1912 43615 16942 33774 28381 18954 20365 13701 217899 522 104230 275237 8726 220065 134006 111723 59409158 193975949 1533582 1533178 30340 1554325 20197 1283 110966 464216 1275 769495433 199 305 130 12913 48009 12348 137319849 6318 16674 16849 21567 7229 11043 9063 56432 24586 108175 55039 79233 7802 123478 396585 10712 574 1486 8352 9693 10380 2390 10537078 12317233 12885501 25078 94765962 43777 71686 17541 18503 211774 63831454 62516302 47294 6464 32835 52489491 112122 19850 46792 27142 27199 2460780 2804840 4800754 18299774 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 1450 4965 174843 2372556 10789 69203 118026500 33861 69387 1253395 2877 623594 1267 267095 13144 40621 336 393545 864463 200045 3318 14374 188 667632 158595251 267499623 227319 60856144 189109 5911087 52967344 60886133 206037 7598 4414 138072 1480 41622619 496059 29646742 329129 32817932 578755 37463398 32018289 28544873 28887862 28889013 28888845 496078 30382495 30674167 30764882 30739409 30675166 29661022 4276 26026 593209 49795 401823 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10144 65716 39722925 9485822 9698736 9698736 476606489 81675 266643040 230595 13529658 7771800 16188 7077 8177 370031 260444 47937966 248805733 475892 194 544084 11471 1059 4091 1418 30164 33518 4781569453 2024-05-18 19063 2252861 2197359 2122585 2546485 208280 269775 104586 18623884 9054512 71772 39956 175447 34347 3101919 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 8272 1711989 115826 3340026 4019 4849 5671 54855 12969337 15910019 47792 14749031 5546630 12969340 224377 55211171 241612 40165483 141 5046 290 1270 50841 35219 1995 40970 43667 21167 1325 23383 1912 43615 16942 33774 28381 18954 20365 13701 217899 522 104230 275237 8726 220065 134006 111723 59409158 193975949 1533582 1533178 30340 1554325 20197 1283 110966 464216 1275 769495433 199 305 130 12913 48009 12348 137319849 6318 16674 16849 21567 7229 11043 9063 56432 24587 108898 55039 79233 7803 123520 396692 10712 574 1486 8352 9693 10380 2390 10537076 12317227 12885496 25078 95258680 43777 71686 17541 18509 211772 64134006 62863887 47294 6464 32835 52761191 112122 19850 46792 27142 27199 2460780 2804840 4800754 18299774 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 1450 4965 174843 2372556 10789 69203 118042692 33861 69387 1253395 2877 623594 1267 267095 13144 40621 336 393545 864463 200045 3318 14374 188 667632 158597481 267451107 227363 62318158 189290 5974072 54154462 62348147 206037 7598 4414 138072 1480 41622619 496420 29678859 329141 32892257 580141 37542076 32084513 28579615 28922471 28923755 28923587 496439 30418679 30710218 30801066 30775593 30711350 29693139 4276 26026 593209 49793 401823 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10144 65716 39722925 9485822 9698736 9698736 476606489 81675 266643040 230595 13529658 7771800 16188 7077 8177 370031 260444 47937966 248805733 475892 194 544084 11471 1060 4116 1418 30222 33518 4787800055 2024-05-26 19063 2257414 2201866 2126832 2546485 208710 270271 104586 18715693 9074826 71772 39956 175447 34347 3101919 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 8272 1711989 115826 3340026 4019 4849 5671 54855 12969337 15910019 47792 14749031 5546630 12969340 224377 55211171 241612 40165483 141 5046 290 1270 50841 35219 1995 40970 43667 21167 1325 23383 1912 43615 16942 33774 28381 18954 20365 13701 217899 522 104230 275237 8726 220065 134006 111723 59409158 193975949 1533582 1533178 30340 1554325 20197 1283 110966 464216 1275 769495433 199 305 130 12914 48021 12348 137319849 6318 16674 16849 21567 7229 11043 9063 56432 24587 108940 55039 79233 7806 123869 398348 10712 574 1486 8352 9693 10380 2390 10550874 12333211 12902456 25078 95956265 43777 71686 17541 18514 211743 64268565 62980257 47293 6464 32835 52874459 112122 19848 46792 27142 27199 2460780 2804840 4800754 18299774 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 1450 4965 174843 2372556 10789 69203 118049971 33861 69387 1253395 2877 623594 1267 267095 13144 40621 336 393545 864463 200045 3318 14374 188 667632 158597481 267451107 227363 62318158 189290 5974072 54154462 62348147 206037 7598 4414 138072 1480 41622619 500356 29863488 329141 32984291 581607 37637535 32172339 28809975 29153854 29154115 29153947 503746 30657856 30950442 31040243 31014770 30950540 29881118 4276 26026 593209 49795 401823 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10144 65716 39722925 9485822 9698736 9698736 476606489 81675 266643040 230595 13529658 7771800 16188 7077 8177 370031 260444 47937966 248805733 475892 194 544084 11471 1060 4116 1418 30222 33518 4791824296 +2024-06-04 19063 2269215 2212826 2137497 2546485 209067 270670 104586 18755430 9081138 71772 39956 175447 34347 3101919 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 8272 1711989 115826 3340026 4019 4849 5671 54855 12969337 15910019 47792 14749031 5546630 12969340 224377 55211171 241612 40165483 141 5046 290 1270 50841 35219 1995 40970 43667 21167 1325 23383 1912 43615 16942 33774 28381 18954 20365 13701 217899 522 104230 275237 8726 220065 134006 111723 59409158 193975949 1533582 1533178 30300 1591525 20725 1283 112259 469324 1274 756717820 199 305 130 12915 48021 12348 137319849 6318 16674 16849 21567 7229 11043 9063 56432 24587 109003 55039 79233 7810 123933 398536 10712 574 1486 8352 9693 10380 2390 10810327 12612609 13223731 25078 96036753 43777 71686 17541 18520 211742 64337032 63029318 47293 6464 32835 52932438 112122 19848 46792 27142 27199 2460780 2804840 4800754 18299774 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 1452 4965 174843 2372556 10789 69203 118052227 33861 69387 1253395 2877 623594 1267 267095 13144 40621 336 393545 864463 200045 3318 14374 188 667632 158597481 267451107 227363 62318158 189290 5974072 54154462 62348147 206037 7598 4429 138072 1480 40452196 500713 29894648 329141 33069706 582908 37725549 32244776 28847508 29191261 29191648 29191480 504103 30695410 30987870 31077797 31052324 30988094 29912817 4276 26026 593209 49849 401823 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10144 65716 39722925 9494738 9709163 9709163 606663709 81713 260791472 230595 12810580 7668829 16188 7077 8178 377848 282077 45084699 245482527 571530 193 639722 11471 1060 4116 1418 30222 33518 4897225406 diff --git a/log/update.log b/log/update.log index 97b8f219..bbab1c90 100644 --- a/log/update.log +++ b/log/update.log @@ -1,16 +1,16 @@ -*** Started: 2024-05-25T11:31:47 *** +*** Started: 2024-05-31T17:00:15 *** ## Prepare input files for BioProject # Checking lock file input/bioproject/download.lock for download -# Local file time: 2024-05-23 18:10:21 +0900 (input/bioproject/bioproject.xml) -# Remote file time: 2024-05-24 09:12:25 +0000 (https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml) +# Local file time: 2024-05-24 18:12:25 +0900 (input/bioproject/bioproject.xml) +# Remote file time: 2024-05-30 09:11:10 +0000 (https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/bioproject https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml python bin/bioproject_xml2tsv.py input/bioproject/bioproject.xml > input/bioproject/bioproject.tsv # Overwriting timestamp of the input/bioproject/download.lock ## Prepare input files for BioSample # Checking lock file input/biosample/download.lock for download -# Local file time: 2024-05-23 21:15:37 +0900 (input/biosample/biosample_set.xml.gz) -# Remote file time: 2024-05-24 12:24:04 +0000 (https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz) +# Local file time: 2024-05-24 21:24:04 +0900 (input/biosample/biosample_set.xml.gz) +# Remote file time: 2024-05-30 12:25:40 +0000 (https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/biosample https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz gzip -dc input/biosample/biosample_set.xml.gz > input/biosample/biosample_set.xml python bin/biosample_xml2tsv.py input/biosample/biosample_set.xml > input/biosample/biosample_set.tsv @@ -24,8 +24,9 @@ python bin/biosample_xml2tsv.py input/biosample/biosample_set.xml > input/biosam # Preserving timestamp of the input/cellosaurus/download.lock ## Prepare input files for Ensembl # Checking lock file input/ensembl/download.lock for download -# File input/ensembl/taxonomy.txt is created 0.7728038254199422 days ago (will be updated when >5 days) -# Preserving timestamp of the input/ensembl/download.lock +# File input/ensembl/taxonomy.txt is created 7.006099898895903 days ago (will be updated when >5 days) +sparql_csv2tsv.sh input/ensembl/taxonomy.rq https://rdfportal.org/ebi/sparql > input/ensembl/taxonomy.txt +# Overwriting timestamp of the input/ensembl/download.lock ## Prepare input files for HMDB # Checking lock file input/hmdb/download.lock for download # Local file time: 2021-11-18 04:54:48 +0900 (input/hmdb/hmdb_metabolites.zip) @@ -66,71 +67,65 @@ bin/sparql_csv2tsv.sh bin/sparql/hp_category.rq https://rdfportal.org/bioportal/ ## Prepare input files for InterPro # Checking lock file input/interpro/download.lock for download # Local file time: 2024-03-27 20:34:03 +0900 (input/interpro/interpro2go) -# Remote file time: 2024-03-27 11:34:03 +0000 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro2go) -# Local file size: 3106303 (input/interpro/interpro2go) -# Remote file size: 3106303 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro2go) +# Remote file time: 2024-05-29 16:47:11 +0000 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro2go) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/interpro https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro2go # Local file time: 2024-03-27 20:49:36 +0900 (input/interpro/protein2ipr.dat.gz) -# Remote file time: 2024-03-27 11:49:36 +0000 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz) -# Local file size: 20410469934 (input/interpro/protein2ipr.dat.gz) -# Remote file size: 20410469934 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz) +# Remote file time: 2024-05-29 17:01:07 +0000 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/interpro https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz +gzip -dc input/interpro/protein2ipr.dat.gz > input/interpro/protein2ipr.dat # Local file time: 2024-03-27 20:34:03 +0900 (input/interpro/interpro.xml.gz) -# Remote file time: 2024-03-27 11:34:03 +0000 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro.xml.gz) -# Local file size: 36914196 (input/interpro/interpro.xml.gz) -# Remote file size: 36914196 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro.xml.gz) -# Preserving timestamp of the input/interpro/download.lock +# Remote file time: 2024-05-29 16:47:11 +0000 (https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro.xml.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/interpro https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro.xml.gz +gzip -dc input/interpro/interpro.xml.gz | python bin/interpro_xml2tsv.py > input/interpro/interpro.tsv +# Overwriting timestamp of the input/interpro/download.lock ## Prepare input files for MGI_GENE # Checking lock file input/mgi_gene/download.lock for download # Local file time: 2024-05-20 21:08:58 +0900 (input/mgi_gene/MRK_List2.rpt) -# Remote file time: 2024-05-20 12:08:58 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt) -# Local file size: 83371055 (input/mgi_gene/MRK_List2.rpt) -# Remote file size: 83371055 (https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt) +# Remote file time: 2024-05-27 12:02:56 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt # Local file time: 2024-05-20 21:05:22 +0900 (input/mgi_gene/MGI_Gene_Model_Coord.rpt) -# Remote file time: 2024-05-20 12:05:22 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt) -# Local file size: 9302154 (input/mgi_gene/MGI_Gene_Model_Coord.rpt) -# Remote file size: 9302154 (https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt) +# Remote file time: 2024-05-27 12:02:33 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt # Local file time: 2024-05-20 21:09:10 +0900 (input/mgi_gene/MRK_SwissProt_TrEMBL.rpt) -# Remote file time: 2024-05-20 12:09:10 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt) -# Local file size: 2104047 (input/mgi_gene/MRK_SwissProt_TrEMBL.rpt) -# Remote file size: 2104047 (https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt) +# Remote file time: 2024-05-27 12:02:57 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt # Local file time: 2024-05-20 21:03:57 +0900 (input/mgi_gene/HGNC_AllianceHomology.rpt) -# Remote file time: 2024-05-20 12:03:57 +0000 (https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt) -# Local file size: 11343519 (input/mgi_gene/HGNC_AllianceHomology.rpt) -# Remote file size: 11343519 (https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt) +# Remote file time: 2024-05-27 12:02:24 +0000 (https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt # Local file time: 2024-05-20 21:07:37 +0900 (input/mgi_gene/MGI_PhenotypicAllele.rpt) -# Remote file time: 2024-05-20 12:07:37 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt) -# Local file size: 24899785 (input/mgi_gene/MGI_PhenotypicAllele.rpt) -# Remote file size: 24899785 (https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt) -# Preserving timestamp of the input/mgi_gene/download.lock +# Remote file time: 2024-05-27 12:02:47 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt +# Overwriting timestamp of the input/mgi_gene/download.lock ## Prepare input files for MGI_GENOTYPE # Checking lock file input/mgi_genotype/download.lock for download # Local file time: 2024-05-20 21:04:53 +0900 (input/mgi_genotype/MGI_DiseaseGeneModel.rpt) -# Remote file time: 2024-05-20 12:04:53 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt) -# Local file size: 13679764 (input/mgi_genotype/MGI_DiseaseGeneModel.rpt) -# Remote file size: 13679764 (https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt) -# Preserving timestamp of the input/mgi_genotype/download.lock +# Remote file time: 2024-05-27 12:02:31 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_genotype https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt +ruby bin/query_mousemine.rb > input/mgi_genotype/mousemine_genotype.tsv +# Overwriting timestamp of the input/mgi_genotype/download.lock ## Prepare input files for NCBI Gene # Checking lock file input/ncbigene/download.lock for download # Local file time: 2024-05-24 14:41:19 +0900 (input/ncbigene/gene2refseq.gz) -# Remote file time: 2024-05-24 05:41:19 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz) -# Local file size: 1728876436 (input/ncbigene/gene2refseq.gz) -# Remote file size: 1728876436 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz) +# Remote file time: 2024-05-31 02:01:42 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz +gzip -dc input/ncbigene/gene2refseq.gz > input/ncbigene/gene2refseq # Local file time: 2024-05-24 14:36:18 +0900 (input/ncbigene/gene2ensembl.gz) -# Remote file time: 2024-05-24 05:36:18 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz) -# Local file size: 226807059 (input/ncbigene/gene2ensembl.gz) -# Remote file size: 226807059 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz) +# Remote file time: 2024-05-31 01:57:20 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz +gzip -dc input/ncbigene/gene2ensembl.gz > input/ncbigene/gene2ensembl # Local file time: 2024-05-24 14:38:16 +0900 (input/ncbigene/gene2go.gz) -# Remote file time: 2024-05-24 05:38:16 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz) -# Local file size: 1077383926 (input/ncbigene/gene2go.gz) -# Remote file size: 1077383926 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz) +# Remote file time: 2024-05-31 01:58:59 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz +gzip -dc input/ncbigene/gene2go.gz > input/ncbigene/gene2go # Local file time: 2024-05-24 14:48:53 +0900 (input/ncbigene/Homo_sapiens.gene_info.gz) -# Remote file time: 2024-05-24 05:48:53 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz) -# Local file size: 5125136 (input/ncbigene/Homo_sapiens.gene_info.gz) -# Remote file size: 5125136 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz) +# Remote file time: 2024-05-31 02:08:51 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz +gzip -dc input/ncbigene/Homo_sapiens.gene_info.gz > input/ncbigene/Homo_sapiens.gene_info # Local file time: 2024-05-24 14:43:12 +0900 (input/ncbigene/gene_info.gz) -# Remote file time: 2024-05-24 05:43:12 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz) -# Local file size: 1143139225 (input/ncbigene/gene_info.gz) -# Remote file size: 1143139225 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz) -# Preserving timestamp of the input/ncbigene/download.lock +# Remote file time: 2024-05-31 02:03:26 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz +gzip -dc input/ncbigene/gene_info.gz > input/ncbigene/gene_info +# Overwriting timestamp of the input/ncbigene/download.lock ## Prepare input files for OMA protein # Checking lock file input/oma_protein/download.lock for download # Local file time: 2023-07-03 21:50:08 +0900 (input/oma_protein/oma-entrez.txt.gz) @@ -149,10 +144,9 @@ bin/sparql_csv2tsv.sh bin/sparql/hp_category.rq https://rdfportal.org/bioportal/ ## Prepare input files for PROSITE # Checking lock file input/prosite/download.lock for download # Local file time: 2024-03-28 00:00:00 +0900 (input/prosite/prosite.dat) -# Remote file time: 2024-03-27 15:00:00 +0000 (https://ftp.expasy.org/databases/prosite/prosite.dat) -# Local file size: 44180519 (input/prosite/prosite.dat) -# Remote file size: 44180519 (https://ftp.expasy.org/databases/prosite/prosite.dat) -# Preserving timestamp of the input/prosite/download.lock +# Remote file time: 2024-05-29 14:00:00 +0000 (https://ftp.expasy.org/databases/prosite/prosite.dat) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/prosite https://ftp.expasy.org/databases/prosite/prosite.dat +# Overwriting timestamp of the input/prosite/download.lock ## Prepare input files for Reactome # Checking lock file input/reactome/download.lock for download # Local file time: 2024-03-15 08:34:17 +0900 (input/reactome/UniProt2ReactomeReactions.txt) @@ -207,10 +201,9 @@ bin/sparql_csv2tsv.sh bin/sparql/hp_category.rq https://rdfportal.org/bioportal/ ## Prepare input files for RefSeq Protein # Checking lock file input/refseq_protein/download.lock for download # Local file time: 2024-05-23 18:25:29 +0900 (input/refseq_protein/gene_refseq_uniprotkb_collab.gz) -# Remote file time: 2024-05-23 09:25:29 +0000 (https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz) -# Local file size: 1063785511 (input/refseq_protein/gene_refseq_uniprotkb_collab.gz) -# Remote file size: 1063785511 (https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz) -# Preserving timestamp of the input/refseq_protein/download.lock +# Remote file time: 2024-05-30 09:25:48 +0000 (https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/refseq_protein https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz +# Overwriting timestamp of the input/refseq_protein/download.lock ## Prepare input files for RefSeq RNA # Checking lock file input/refseq_rna/download.lock for download # Local file time: 2024-05-10 07:20:23 +0900 (input/refseq_rna/RELEASE_NUMBER) @@ -221,25 +214,22 @@ bin/sparql_csv2tsv.sh bin/sparql/hp_category.rq https://rdfportal.org/bioportal/ ## Prepare input files for Rhea # Checking lock file input/rhea/download.lock for download # Local file time: 2024-03-28 00:00:00 +0900 (input/rhea/rhea2uniprot_sprot.tsv) -# Remote file time: 2024-03-27 15:00:00 +0000 (https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_sprot.tsv) -# Local file size: 7968709 (input/rhea/rhea2uniprot_sprot.tsv) -# Remote file size: 7968709 (https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_sprot.tsv) +# Remote file time: 2024-05-29 14:00:00 +0000 (https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_sprot.tsv) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/rhea https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_sprot.tsv # Local file time: 2024-03-28 00:00:00 +0900 (input/rhea/rhea2uniprot_trembl.tsv.gz) -# Remote file time: 2024-03-27 15:00:00 +0000 (https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_trembl.tsv.gz) -# Local file size: 182478221 (input/rhea/rhea2uniprot_trembl.tsv.gz) -# Remote file size: 182478221 (https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_trembl.tsv.gz) +# Remote file time: 2024-05-29 14:00:00 +0000 (https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_trembl.tsv.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/rhea https://ftp.expasy.org/databases/rhea/tsv/rhea2uniprot_trembl.tsv.gz +gzip -dc input/rhea/rhea2uniprot_trembl.tsv.gz > input/rhea/rhea2uniprot_trembl.tsv # Local file time: 2024-03-28 00:00:00 +0900 (input/rhea/rhea2go.tsv) -# Remote file time: 2024-03-27 15:00:00 +0000 (https://ftp.expasy.org/databases/rhea/tsv/rhea2go.tsv) -# Local file size: 115029 (input/rhea/rhea2go.tsv) -# Remote file size: 115029 (https://ftp.expasy.org/databases/rhea/tsv/rhea2go.tsv) -# Preserving timestamp of the input/rhea/download.lock +# Remote file time: 2024-05-29 14:00:00 +0000 (https://ftp.expasy.org/databases/rhea/tsv/rhea2go.tsv) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/rhea https://ftp.expasy.org/databases/rhea/tsv/rhea2go.tsv +# Overwriting timestamp of the input/rhea/download.lock ## Prepare input files for SRA # Checking lock file input/sra/download.lock for download # Local file time: 2024-05-24 18:13:05 +0900 (input/sra/SRA_Accessions.tab) -# Remote file time: 2024-05-24 09:13:05 +0000 (https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab) -# Local file size: 23910579132 (input/sra/SRA_Accessions.tab) -# Remote file size: 23910579132 (https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab) -# Preserving timestamp of the input/sra/download.lock +# Remote file time: 2024-05-31 08:56:35 +0000 (https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/sra https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab +# Overwriting timestamp of the input/sra/download.lock ## Prepare input files for SwissLipids # Checking lock file input/swisslipids/download.lock for download wget --quiet --no-check-certificate -O input/swisslipids/lipids.tsv.gz 'https://www.swisslipids.org/api/file.php?cas=download_files&file=lipids.tsv' @@ -250,225 +240,224 @@ gzip -dc input/swisslipids/lipids2uniprot.tsv.gz > input/swisslipids/lipids2unip ## Prepare input files for UniProt # Checking lock file input/uniprot/download.lock for download # Local file time: 2024-03-27 23:42:02 +0900 (input/uniprot/idmapping.dat.gz) -# Remote file time: 2024-03-27 14:42:02 +0000 (https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping.dat.gz) -# Local file size: 23428176288 (input/uniprot/idmapping.dat.gz) -# Remote file size: 23428176288 (https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping.dat.gz) +# Remote file time: 2024-05-29 19:00:09 +0000 (https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping.dat.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/uniprot https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping.dat.gz # Local file time: 2024-03-27 23:42:02 +0900 (input/uniprot/idmapping_selected.tab.gz) -# Remote file time: 2024-03-27 14:42:02 +0000 (https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping_selected.tab.gz) -# Local file size: 11917781578 (input/uniprot/idmapping_selected.tab.gz) -# Remote file size: 11917781578 (https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping_selected.tab.gz) +# Remote file time: 2024-05-29 19:00:09 +0000 (https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping_selected.tab.gz) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/uniprot https://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping_selected.tab.gz +gzip -dc input/uniprot/idmapping_selected.tab.gz | cut -f 1,7 | grep 'GO:' > input/uniprot/idmapping_selected.go wget --quiet --no-check-certificate -O input/uniprot/uniprot_reference_proteome.tab.gz 'https://rest.uniprot.org/proteomes/stream?compressed=true&fields=upid%2Corganism_id%2Cgenome_assembly%2Corganism&format=tsv&query=%28%2A%29' -# Preserving timestamp of the input/uniprot/download.lock +# Overwriting timestamp of the input/uniprot/download.lock ## Prepare input files for Taxonomy # Checking lock file input/taxonomy/download.lock for download -# Local file time: 2024-05-18 02:28:22 +0900 (input/taxonomy/taxdump.tar.gz) -# Remote file time: 2024-05-25 04:28:29 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz) +# Local file time: 2024-05-25 13:28:29 +0900 (input/taxonomy/taxdump.tar.gz) +# Remote file time: 2024-06-02 18:28:24 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/taxonomy https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz mkdir -p input/taxonomy/taxdump && tar xzf input/taxonomy/taxdump.tar.gz -C input/taxonomy/taxdump/ # Overwriting timestamp of the input/taxonomy/download.lock ### Update TSV for affy_probeset-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/affy_probeset-ncbigene.tsv is newer than config/affy_probeset-ncbigene/config.yaml # File output/tsv/affy_probeset-ncbigene.tsv has no timestamp file -# File output/tsv/affy_probeset-ncbigene.tsv is created 7.459191961548542 days ago (will be updated when >5 days) +# File output/tsv/affy_probeset-ncbigene.tsv is created 8.584225691900313 days ago (will be updated when >5 days) ## Update config/affy_probeset-ncbigene/config.yaml => output/tsv/affy_probeset-ncbigene.tsv -< 2024-05-25T13:48:36 affy_probeset-ncbigene +< 2024-06-03T03:49:55 affy_probeset-ncbigene togoid-config config/affy_probeset-ncbigene update # Success: output/tsv/affy_probeset-ncbigene.tsv is updated -> 2024-05-25T13:48:38 affy_probeset-ncbigene +> 2024-06-03T03:49:57 affy_probeset-ncbigene Rule for TSV (output/tsv/affy_probeset-ncbigene.tsv) ------------------------------ Investigating output/tsv/affy_probeset-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 13:48:38 +0900 +timestamp: 2024-06-03 03:49:57 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for assembly_insdc-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-bioproject.tsv is newer than config/assembly_insdc-bioproject/config.yaml # File output/tsv/assembly_insdc-bioproject.tsv has no timestamp file -# File output/tsv/assembly_insdc-bioproject.tsv is created 7.459194421248137 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-bioproject.tsv is created 8.584215536087152 days ago (will be updated when >5 days) ## Update config/assembly_insdc-bioproject/config.yaml => output/tsv/assembly_insdc-bioproject.tsv -< 2024-05-25T13:48:38 assembly_insdc-bioproject +< 2024-06-03T03:49:57 assembly_insdc-bioproject togoid-config config/assembly_insdc-bioproject update # Success: output/tsv/assembly_insdc-bioproject.tsv is updated -> 2024-05-25T13:48:41 assembly_insdc-bioproject +> 2024-06-03T03:49:59 assembly_insdc-bioproject Rule for TSV (output/tsv/assembly_insdc-bioproject.tsv) ------------------------------ Investigating output/tsv/assembly_insdc-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 13:48:41 +0900 +timestamp: 2024-06-03 03:49:59 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for assembly_insdc-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-biosample.tsv is newer than config/assembly_insdc-biosample/config.yaml # File output/tsv/assembly_insdc-biosample.tsv has no timestamp file -# File output/tsv/assembly_insdc-biosample.tsv is created 7.459193663920243 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-biosample.tsv is created 8.584217934955776 days ago (will be updated when >5 days) ## Update config/assembly_insdc-biosample/config.yaml => output/tsv/assembly_insdc-biosample.tsv -< 2024-05-25T13:48:41 assembly_insdc-biosample +< 2024-06-03T03:49:59 assembly_insdc-biosample togoid-config config/assembly_insdc-biosample update # Success: output/tsv/assembly_insdc-biosample.tsv is updated -> 2024-05-25T13:48:43 assembly_insdc-biosample +> 2024-06-03T03:50:02 assembly_insdc-biosample Rule for TSV (output/tsv/assembly_insdc-biosample.tsv) ------------------------------ Investigating output/tsv/assembly_insdc-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 13:48:43 +0900 +timestamp: 2024-06-03 03:50:02 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for assembly_insdc-insdc_master if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-insdc_master.tsv is newer than config/assembly_insdc-insdc_master/config.yaml # File output/tsv/assembly_insdc-insdc_master.tsv has no timestamp file -# File output/tsv/assembly_insdc-insdc_master.tsv is created 7.459191442857199 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-insdc_master.tsv is created 8.584217339174131 days ago (will be updated when >5 days) ## Update config/assembly_insdc-insdc_master/config.yaml => output/tsv/assembly_insdc-insdc_master.tsv -< 2024-05-25T13:48:43 assembly_insdc-insdc_master +< 2024-06-03T03:50:02 assembly_insdc-insdc_master togoid-config config/assembly_insdc-insdc_master update # Success: output/tsv/assembly_insdc-insdc_master.tsv is updated -> 2024-05-25T13:48:46 assembly_insdc-insdc_master +> 2024-06-03T03:50:04 assembly_insdc-insdc_master Rule for TSV (output/tsv/assembly_insdc-insdc_master.tsv) ------------------------------ Investigating output/tsv/assembly_insdc-insdc_master.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 13:48:46 +0900 +timestamp: 2024-06-03 03:50:04 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for bioproject-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-biosample.tsv is newer than config/bioproject-biosample/config.yaml # File output/tsv/bioproject-biosample.tsv is older than input/bioproject/download.lock ## Update config/bioproject-biosample/config.yaml => output/tsv/bioproject-biosample.tsv -< 2024-05-25T13:48:46 bioproject-biosample +< 2024-06-03T03:50:04 bioproject-biosample togoid-config config/bioproject-biosample update # Success: output/tsv/bioproject-biosample.tsv is updated -> 2024-05-25T13:48:48 bioproject-biosample +> 2024-06-03T03:50:07 bioproject-biosample Rule for TSV (output/tsv/bioproject-biosample.tsv) ------------------------------ Investigating output/tsv/bioproject-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 13:48:48 +0900 +timestamp: 2024-06-03 03:50:07 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-05-25 13:48:48 +0900) -latest-prerequisite time: 2024-05-25 13:48:48 +0900 +--prepare:bioproject (2024-06-03 03:50:07 +0900) +latest-prerequisite time: 2024-06-03 03:50:07 +0900 ................................ ### Update TSV for bioproject-geo_series if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-geo_series.tsv is newer than config/bioproject-geo_series/config.yaml # File output/tsv/bioproject-geo_series.tsv is older than input/bioproject/download.lock ## Update config/bioproject-geo_series/config.yaml => output/tsv/bioproject-geo_series.tsv -< 2024-05-25T13:48:48 bioproject-geo_series +< 2024-06-03T03:50:07 bioproject-geo_series togoid-config config/bioproject-geo_series update # Success: output/tsv/bioproject-geo_series.tsv is updated -> 2024-05-25T13:48:50 bioproject-geo_series +> 2024-06-03T03:50:11 bioproject-geo_series Rule for TSV (output/tsv/bioproject-geo_series.tsv) ------------------------------ Investigating output/tsv/bioproject-geo_series.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 13:48:50 +0900 +timestamp: 2024-06-03 03:50:11 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-05-25 13:48:50 +0900) -latest-prerequisite time: 2024-05-25 13:48:50 +0900 +--prepare:bioproject (2024-06-03 03:50:11 +0900) +latest-prerequisite time: 2024-06-03 03:50:11 +0900 ................................ ### Update TSV for bioproject-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-pubmed.tsv is newer than config/bioproject-pubmed/config.yaml # File output/tsv/bioproject-pubmed.tsv is older than input/bioproject/download.lock ## Update config/bioproject-pubmed/config.yaml => output/tsv/bioproject-pubmed.tsv -< 2024-05-25T13:48:50 bioproject-pubmed +< 2024-06-03T03:50:11 bioproject-pubmed togoid-config config/bioproject-pubmed update # Success: output/tsv/bioproject-pubmed.tsv is updated -> 2024-05-25T13:48:52 bioproject-pubmed +> 2024-06-03T03:50:13 bioproject-pubmed Rule for TSV (output/tsv/bioproject-pubmed.tsv) ------------------------------ Investigating output/tsv/bioproject-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 13:48:52 +0900 +timestamp: 2024-06-03 03:50:13 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-05-25 13:48:52 +0900) -latest-prerequisite time: 2024-05-25 13:48:52 +0900 +--prepare:bioproject (2024-06-03 03:50:13 +0900) +latest-prerequisite time: 2024-06-03 03:50:13 +0900 ................................ ### Update TSV for bioproject_umbrella-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject_umbrella-bioproject.tsv is newer than config/bioproject_umbrella-bioproject/config.yaml # File output/tsv/bioproject_umbrella-bioproject.tsv has no timestamp file -# File output/tsv/bioproject_umbrella-bioproject.tsv is created 7.459213957247627 days ago (will be updated when >5 days) +# File output/tsv/bioproject_umbrella-bioproject.tsv is created 8.584265973984085 days ago (will be updated when >5 days) ## Update config/bioproject_umbrella-bioproject/config.yaml => output/tsv/bioproject_umbrella-bioproject.tsv -< 2024-05-25T13:48:52 bioproject_umbrella-bioproject +< 2024-06-03T03:50:13 bioproject_umbrella-bioproject togoid-config config/bioproject_umbrella-bioproject update # Success: output/tsv/bioproject_umbrella-bioproject.tsv is updated -> 2024-05-25T13:48:52 bioproject_umbrella-bioproject +> 2024-06-03T03:50:13 bioproject_umbrella-bioproject Rule for TSV (output/tsv/bioproject_umbrella-bioproject.tsv) ------------------------------ Investigating output/tsv/bioproject_umbrella-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 13:48:52 +0900 +timestamp: 2024-06-03 03:50:13 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-05-25 13:48:52 +0900) -latest-prerequisite time: 2024-05-25 13:48:52 +0900 +--prepare:bioproject (2024-06-03 03:50:13 +0900) +latest-prerequisite time: 2024-06-03 03:50:13 +0900 ................................ ### Update TSV for biosample-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/biosample-bioproject.tsv is newer than config/biosample-bioproject/config.yaml # File output/tsv/biosample-bioproject.tsv is older than input/biosample/download.lock ## Update config/biosample-bioproject/config.yaml => output/tsv/biosample-bioproject.tsv -< 2024-05-25T13:48:52 biosample-bioproject +< 2024-06-03T03:50:13 biosample-bioproject togoid-config config/biosample-bioproject update # Success: output/tsv/biosample-bioproject.tsv is updated -> 2024-05-25T13:49:48 biosample-bioproject +> 2024-06-03T03:50:56 biosample-bioproject Rule for TSV (output/tsv/biosample-bioproject.tsv) ------------------------------ Investigating output/tsv/biosample-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 13:49:48 +0900 +timestamp: 2024-06-03 03:50:56 +0900 pre-requisites: --output/tsv/ () ---prepare:biosample (2024-05-25 13:49:48 +0900) -latest-prerequisite time: 2024-05-25 13:49:48 +0900 +--prepare:biosample (2024-06-03 03:50:56 +0900) +latest-prerequisite time: 2024-06-03 03:50:56 +0900 ................................ ### Update TSV for biosample-geo_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/biosample-geo_sample.tsv is newer than config/biosample-geo_sample/config.yaml # File output/tsv/biosample-geo_sample.tsv is older than input/biosample/download.lock ## Update config/biosample-geo_sample/config.yaml => output/tsv/biosample-geo_sample.tsv -< 2024-05-25T13:49:48 biosample-geo_sample +< 2024-06-03T03:50:56 biosample-geo_sample togoid-config config/biosample-geo_sample update # Success: output/tsv/biosample-geo_sample.tsv is updated -> 2024-05-25T13:50:47 biosample-geo_sample +> 2024-06-03T03:51:54 biosample-geo_sample Rule for TSV (output/tsv/biosample-geo_sample.tsv) ------------------------------ Investigating output/tsv/biosample-geo_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 13:50:47 +0900 +timestamp: 2024-06-03 03:51:54 +0900 pre-requisites: --output/tsv/ () ---prepare:biosample (2024-05-25 13:50:47 +0900) -latest-prerequisite time: 2024-05-25 13:50:47 +0900 +--prepare:biosample (2024-06-03 03:51:54 +0900) +latest-prerequisite time: 2024-06-03 03:51:54 +0900 ................................ ### Update TSV for cellosaurus-ncit_disease if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -483,8 +472,8 @@ task needed: true timestamp: 2024-05-03 19:54:03 +0900 pre-requisites: --output/tsv/ () ---prepare:cellosaurus (2024-05-25 13:50:47 +0900) -latest-prerequisite time: 2024-05-25 13:50:47 +0900 +--prepare:cellosaurus (2024-06-03 03:51:54 +0900) +latest-prerequisite time: 2024-06-03 03:51:54 +0900 ................................ ### Update TSV for cellosaurus-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -499,250 +488,250 @@ task needed: true timestamp: 2024-05-03 19:54:07 +0900 pre-requisites: --output/tsv/ () ---prepare:cellosaurus (2024-05-25 13:50:47 +0900) -latest-prerequisite time: 2024-05-25 13:50:47 +0900 +--prepare:cellosaurus (2024-06-03 03:51:54 +0900) +latest-prerequisite time: 2024-06-03 03:51:54 +0900 ................................ ### Update TSV for chebi-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chebi-inchi_key.tsv is newer than config/chebi-inchi_key/config.yaml # File output/tsv/chebi-inchi_key.tsv has no timestamp file -# File output/tsv/chebi-inchi_key.tsv is created 7.459350083331574 days ago (will be updated when >5 days) +# File output/tsv/chebi-inchi_key.tsv is created 8.584096928002952 days ago (will be updated when >5 days) ## Update config/chebi-inchi_key/config.yaml => output/tsv/chebi-inchi_key.tsv -< 2024-05-25T13:50:47 chebi-inchi_key +< 2024-06-03T03:51:54 chebi-inchi_key togoid-config config/chebi-inchi_key update # Success: output/tsv/chebi-inchi_key.tsv is updated -> 2024-05-25T13:50:48 chebi-inchi_key +> 2024-06-03T03:51:55 chebi-inchi_key Rule for TSV (output/tsv/chebi-inchi_key.tsv) ------------------------------ Investigating output/tsv/chebi-inchi_key.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 13:50:48 +0900 +timestamp: 2024-06-03 03:51:55 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_compound-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-chebi.tsv is newer than config/chembl_compound-chebi/config.yaml # File output/tsv/chembl_compound-chebi.tsv has no timestamp file -# File output/tsv/chembl_compound-chebi.tsv is created 7.459354482169271 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-chebi.tsv is created 8.584101175060706 days ago (will be updated when >5 days) ## Update config/chembl_compound-chebi/config.yaml => output/tsv/chembl_compound-chebi.tsv -< 2024-05-25T13:50:48 chembl_compound-chebi +< 2024-06-03T03:51:55 chembl_compound-chebi togoid-config config/chembl_compound-chebi update # Success: output/tsv/chembl_compound-chebi.tsv is updated -> 2024-05-25T13:50:48 chembl_compound-chebi +> 2024-06-03T03:51:55 chembl_compound-chebi Rule for TSV (output/tsv/chembl_compound-chebi.tsv) ------------------------------ Investigating output/tsv/chembl_compound-chebi.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 13:50:48 +0900 +timestamp: 2024-06-03 03:51:55 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_compound-chembl_target if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-chembl_target.tsv is newer than config/chembl_compound-chembl_target/config.yaml # File output/tsv/chembl_compound-chembl_target.tsv has no timestamp file -# File output/tsv/chembl_compound-chembl_target.tsv is created 7.448421822313785 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-chembl_target.tsv is created 8.573106075483924 days ago (will be updated when >5 days) ## Update config/chembl_compound-chembl_target/config.yaml => output/tsv/chembl_compound-chembl_target.tsv -< 2024-05-25T13:50:48 chembl_compound-chembl_target +< 2024-06-03T03:51:55 chembl_compound-chembl_target togoid-config config/chembl_compound-chembl_target update # Success: output/tsv/chembl_compound-chembl_target.tsv is updated -> 2024-05-25T14:06:39 chembl_compound-chembl_target +> 2024-06-03T04:07:39 chembl_compound-chembl_target Rule for TSV (output/tsv/chembl_compound-chembl_target.tsv) ------------------------------ Investigating output/tsv/chembl_compound-chembl_target.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:06:39 +0900 +timestamp: 2024-06-03 04:07:39 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_compound-drugbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-drugbank.tsv is newer than config/chembl_compound-drugbank/config.yaml # File output/tsv/chembl_compound-drugbank.tsv has no timestamp file -# File output/tsv/chembl_compound-drugbank.tsv is created 7.4594198767391315 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-drugbank.tsv is created 8.5840228691978 days ago (will be updated when >5 days) ## Update config/chembl_compound-drugbank/config.yaml => output/tsv/chembl_compound-drugbank.tsv -< 2024-05-25T14:06:39 chembl_compound-drugbank +< 2024-06-03T04:07:39 chembl_compound-drugbank togoid-config config/chembl_compound-drugbank update # Success: output/tsv/chembl_compound-drugbank.tsv is updated -> 2024-05-25T14:06:39 chembl_compound-drugbank +> 2024-06-03T04:07:40 chembl_compound-drugbank Rule for TSV (output/tsv/chembl_compound-drugbank.tsv) ------------------------------ Investigating output/tsv/chembl_compound-drugbank.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:06:39 +0900 +timestamp: 2024-06-03 04:07:39 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_compound-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-hmdb.tsv is newer than config/chembl_compound-hmdb/config.yaml # File output/tsv/chembl_compound-hmdb.tsv has no timestamp file -# File output/tsv/chembl_compound-hmdb.tsv is created 7.459420455194444 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-hmdb.tsv is created 8.584022819488276 days ago (will be updated when >5 days) ## Update config/chembl_compound-hmdb/config.yaml => output/tsv/chembl_compound-hmdb.tsv -< 2024-05-25T14:06:39 chembl_compound-hmdb +< 2024-06-03T04:07:40 chembl_compound-hmdb togoid-config config/chembl_compound-hmdb update # Success: output/tsv/chembl_compound-hmdb.tsv is updated -> 2024-05-25T14:06:40 chembl_compound-hmdb +> 2024-06-03T04:07:40 chembl_compound-hmdb Rule for TSV (output/tsv/chembl_compound-hmdb.tsv) ------------------------------ Investigating output/tsv/chembl_compound-hmdb.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:06:40 +0900 +timestamp: 2024-06-03 04:07:40 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_compound-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-inchi_key.tsv is newer than config/chembl_compound-inchi_key/config.yaml # File output/tsv/chembl_compound-inchi_key.tsv has no timestamp file -# File output/tsv/chembl_compound-inchi_key.tsv is created 7.459377944948912 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-inchi_key.tsv is created 8.583982118883032 days ago (will be updated when >5 days) ## Update config/chembl_compound-inchi_key/config.yaml => output/tsv/chembl_compound-inchi_key.tsv -< 2024-05-25T14:06:40 chembl_compound-inchi_key +< 2024-06-03T04:07:40 chembl_compound-inchi_key togoid-config config/chembl_compound-inchi_key update # Success: output/tsv/chembl_compound-inchi_key.tsv is updated -> 2024-05-25T14:06:44 chembl_compound-inchi_key +> 2024-06-03T04:07:45 chembl_compound-inchi_key Rule for TSV (output/tsv/chembl_compound-inchi_key.tsv) ------------------------------ Investigating output/tsv/chembl_compound-inchi_key.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:06:44 +0900 +timestamp: 2024-06-03 04:07:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_compound-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-mesh.tsv is newer than config/chembl_compound-mesh/config.yaml # File output/tsv/chembl_compound-mesh.tsv has no timestamp file -# File output/tsv/chembl_compound-mesh.tsv is created 7.459419011618658 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-mesh.tsv is created 8.584037175930915 days ago (will be updated when >5 days) ## Update config/chembl_compound-mesh/config.yaml => output/tsv/chembl_compound-mesh.tsv -< 2024-05-25T14:06:44 chembl_compound-mesh +< 2024-06-03T04:07:45 chembl_compound-mesh togoid-config config/chembl_compound-mesh update # Success: output/tsv/chembl_compound-mesh.tsv is updated -> 2024-05-25T14:06:44 chembl_compound-mesh +> 2024-06-03T04:07:46 chembl_compound-mesh Rule for TSV (output/tsv/chembl_compound-mesh.tsv) ------------------------------ Investigating output/tsv/chembl_compound-mesh.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:06:44 +0900 +timestamp: 2024-06-03 04:07:46 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_compound-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pdb_ccd.tsv is newer than config/chembl_compound-pdb_ccd/config.yaml # File output/tsv/chembl_compound-pdb_ccd.tsv has no timestamp file -# File output/tsv/chembl_compound-pdb_ccd.tsv is created 7.459419432913496 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pdb_ccd.tsv is created 8.584044323024687 days ago (will be updated when >5 days) ## Update config/chembl_compound-pdb_ccd/config.yaml => output/tsv/chembl_compound-pdb_ccd.tsv -< 2024-05-25T14:06:44 chembl_compound-pdb_ccd +< 2024-06-03T04:07:46 chembl_compound-pdb_ccd togoid-config config/chembl_compound-pdb_ccd update # Success: output/tsv/chembl_compound-pdb_ccd.tsv is updated -> 2024-05-25T14:06:45 chembl_compound-pdb_ccd +> 2024-06-03T04:07:47 chembl_compound-pdb_ccd Rule for TSV (output/tsv/chembl_compound-pdb_ccd.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pdb_ccd.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:06:45 +0900 +timestamp: 2024-06-03 04:07:47 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_compound-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubchem_compound.tsv is newer than config/chembl_compound-pubchem_compound/config.yaml # File output/tsv/chembl_compound-pubchem_compound.tsv has no timestamp file -# File output/tsv/chembl_compound-pubchem_compound.tsv is created 7.459379266247963 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubchem_compound.tsv is created 8.584004487807778 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubchem_compound/config.yaml => output/tsv/chembl_compound-pubchem_compound.tsv -< 2024-05-25T14:06:45 chembl_compound-pubchem_compound +< 2024-06-03T04:07:47 chembl_compound-pubchem_compound togoid-config config/chembl_compound-pubchem_compound update # Success: output/tsv/chembl_compound-pubchem_compound.tsv is updated -> 2024-05-25T14:06:49 chembl_compound-pubchem_compound +> 2024-06-03T04:07:51 chembl_compound-pubchem_compound Rule for TSV (output/tsv/chembl_compound-pubchem_compound.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pubchem_compound.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:06:49 +0900 +timestamp: 2024-06-03 04:07:51 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_compound-pubchem_substance if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubchem_substance.tsv is newer than config/chembl_compound-pubchem_substance/config.yaml # File output/tsv/chembl_compound-pubchem_substance.tsv has no timestamp file -# File output/tsv/chembl_compound-pubchem_substance.tsv is created 7.459411293486193 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubchem_substance.tsv is created 8.584035215027882 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubchem_substance/config.yaml => output/tsv/chembl_compound-pubchem_substance.tsv -< 2024-05-25T14:06:49 chembl_compound-pubchem_substance +< 2024-06-03T04:07:51 chembl_compound-pubchem_substance togoid-config config/chembl_compound-pubchem_substance update # Success: output/tsv/chembl_compound-pubchem_substance.tsv is updated -> 2024-05-25T14:06:50 chembl_compound-pubchem_substance +> 2024-06-03T04:07:52 chembl_compound-pubchem_substance Rule for TSV (output/tsv/chembl_compound-pubchem_substance.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pubchem_substance.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:06:50 +0900 +timestamp: 2024-06-03 04:07:52 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_compound-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubmed.tsv is newer than config/chembl_compound-pubmed/config.yaml # File output/tsv/chembl_compound-pubmed.tsv has no timestamp file -# File output/tsv/chembl_compound-pubmed.tsv is created 7.459389952885092 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubmed.tsv is created 8.584016728736817 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubmed/config.yaml => output/tsv/chembl_compound-pubmed.tsv -< 2024-05-25T14:06:50 chembl_compound-pubmed +< 2024-06-03T04:07:52 chembl_compound-pubmed togoid-config config/chembl_compound-pubmed update # Success: output/tsv/chembl_compound-pubmed.tsv is updated -> 2024-05-25T14:06:53 chembl_compound-pubmed +> 2024-06-03T04:07:54 chembl_compound-pubmed Rule for TSV (output/tsv/chembl_compound-pubmed.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pubmed.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:06:53 +0900 +timestamp: 2024-06-03 04:07:54 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_target-ensembl_gene if check_tsv_filesize false or check_config_timestamp true or check_tsv_timestamp true # File output/tsv/chembl_target-ensembl_gene.tsv is older than config/chembl_target-ensembl_gene/config.yaml ## Update config/chembl_target-ensembl_gene/config.yaml => output/tsv/chembl_target-ensembl_gene.tsv -< 2024-05-25T14:06:53 chembl_target-ensembl_gene +< 2024-06-03T04:07:54 chembl_target-ensembl_gene togoid-config config/chembl_target-ensembl_gene update # Error: output/tsv/chembl_target-ensembl_gene.tsv new file size per old 0 / 61845 = 0.0 < 0.5 # Error: Failed to create output/tsv/chembl_target-ensembl_gene.tsv or created file was empty # Failure: output/tsv/chembl_target-ensembl_gene.tsv is not updated -> 2024-05-25T14:06:53 chembl_target-ensembl_gene +> 2024-06-03T04:07:55 chembl_target-ensembl_gene Rule for TSV (output/tsv/chembl_target-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/chembl_target-ensembl_gene.tsv @@ -751,155 +740,155 @@ task needed: true timestamp: 2023-08-25 17:59:01 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_target-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-go.tsv is newer than config/chembl_target-go/config.yaml # File output/tsv/chembl_target-go.tsv has no timestamp file -# File output/tsv/chembl_target-go.tsv is created 7.459415766502604 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-go.tsv is created 8.58404349711485 days ago (will be updated when >5 days) ## Update config/chembl_target-go/config.yaml => output/tsv/chembl_target-go.tsv -< 2024-05-25T14:06:53 chembl_target-go +< 2024-06-03T04:07:55 chembl_target-go togoid-config config/chembl_target-go update # Success: output/tsv/chembl_target-go.tsv is updated -> 2024-05-25T14:06:53 chembl_target-go +> 2024-06-03T04:07:55 chembl_target-go Rule for TSV (output/tsv/chembl_target-go.tsv) ------------------------------ Investigating output/tsv/chembl_target-go.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:06:53 +0900 +timestamp: 2024-06-03 04:07:55 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_target-interpro if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-interpro.tsv is newer than config/chembl_target-interpro/config.yaml # File output/tsv/chembl_target-interpro.tsv has no timestamp file -# File output/tsv/chembl_target-interpro.tsv is created 7.459415683274271 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-interpro.tsv is created 8.584043235172778 days ago (will be updated when >5 days) ## Update config/chembl_target-interpro/config.yaml => output/tsv/chembl_target-interpro.tsv -< 2024-05-25T14:06:54 chembl_target-interpro +< 2024-06-03T04:07:55 chembl_target-interpro togoid-config config/chembl_target-interpro update # Success: output/tsv/chembl_target-interpro.tsv is updated -> 2024-05-25T14:06:54 chembl_target-interpro +> 2024-06-03T04:07:56 chembl_target-interpro Rule for TSV (output/tsv/chembl_target-interpro.tsv) ------------------------------ Investigating output/tsv/chembl_target-interpro.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:06:54 +0900 +timestamp: 2024-06-03 04:07:56 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_target-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-pdb.tsv is newer than config/chembl_target-pdb/config.yaml # File output/tsv/chembl_target-pdb.tsv has no timestamp file -# File output/tsv/chembl_target-pdb.tsv is created 7.459404144082627 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-pdb.tsv is created 8.584042598614085 days ago (will be updated when >5 days) ## Update config/chembl_target-pdb/config.yaml => output/tsv/chembl_target-pdb.tsv -< 2024-05-25T14:06:54 chembl_target-pdb +< 2024-06-03T04:07:56 chembl_target-pdb togoid-config config/chembl_target-pdb update # Success: output/tsv/chembl_target-pdb.tsv is updated -> 2024-05-25T14:06:54 chembl_target-pdb +> 2024-06-03T04:07:56 chembl_target-pdb Rule for TSV (output/tsv/chembl_target-pdb.tsv) ------------------------------ Investigating output/tsv/chembl_target-pdb.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:06:54 +0900 +timestamp: 2024-06-03 04:07:56 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_target-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-pfam.tsv is newer than config/chembl_target-pfam/config.yaml # File output/tsv/chembl_target-pfam.tsv has no timestamp file -# File output/tsv/chembl_target-pfam.tsv is created 7.459404612962686 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-pfam.tsv is created 8.584043671175879 days ago (will be updated when >5 days) ## Update config/chembl_target-pfam/config.yaml => output/tsv/chembl_target-pfam.tsv -< 2024-05-25T14:06:54 chembl_target-pfam +< 2024-06-03T04:07:56 chembl_target-pfam togoid-config config/chembl_target-pfam update # Success: output/tsv/chembl_target-pfam.tsv is updated -> 2024-05-25T14:06:55 chembl_target-pfam +> 2024-06-03T04:07:57 chembl_target-pfam Rule for TSV (output/tsv/chembl_target-pfam.tsv) ------------------------------ Investigating output/tsv/chembl_target-pfam.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:06:55 +0900 +timestamp: 2024-06-03 04:07:57 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_target-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-reactome_pathway.tsv is newer than config/chembl_target-reactome_pathway/config.yaml # File output/tsv/chembl_target-reactome_pathway.tsv has no timestamp file -# File output/tsv/chembl_target-reactome_pathway.tsv is created 7.4594044343962045 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-reactome_pathway.tsv is created 8.584043061820255 days ago (will be updated when >5 days) ## Update config/chembl_target-reactome_pathway/config.yaml => output/tsv/chembl_target-reactome_pathway.tsv -< 2024-05-25T14:06:55 chembl_target-reactome_pathway +< 2024-06-03T04:07:57 chembl_target-reactome_pathway togoid-config config/chembl_target-reactome_pathway update # Success: output/tsv/chembl_target-reactome_pathway.tsv is updated -> 2024-05-25T14:06:55 chembl_target-reactome_pathway +> 2024-06-03T04:07:57 chembl_target-reactome_pathway Rule for TSV (output/tsv/chembl_target-reactome_pathway.tsv) ------------------------------ Investigating output/tsv/chembl_target-reactome_pathway.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:06:55 +0900 +timestamp: 2024-06-03 04:07:57 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for chembl_target-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-uniprot.tsv is newer than config/chembl_target-uniprot/config.yaml # File output/tsv/chembl_target-uniprot.tsv has no timestamp file -# File output/tsv/chembl_target-uniprot.tsv is created 7.459314079126563 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-uniprot.tsv is created 8.583948672220428 days ago (will be updated when >5 days) ## Update config/chembl_target-uniprot/config.yaml => output/tsv/chembl_target-uniprot.tsv -< 2024-05-25T14:06:55 chembl_target-uniprot +< 2024-06-03T04:07:57 chembl_target-uniprot togoid-config config/chembl_target-uniprot update # Success: output/tsv/chembl_target-uniprot.tsv is updated -> 2024-05-25T14:07:04 chembl_target-uniprot +> 2024-06-03T04:08:05 chembl_target-uniprot Rule for TSV (output/tsv/chembl_target-uniprot.tsv) ------------------------------ Investigating output/tsv/chembl_target-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:07:04 +0900 +timestamp: 2024-06-03 04:08:05 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for clinvar-medgen if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-medgen.tsv is newer than config/clinvar-medgen/config.yaml # File output/tsv/clinvar-medgen.tsv has no timestamp file -# File output/tsv/clinvar-medgen.tsv is created 7.45940058086596 days ago (will be updated when >5 days) +# File output/tsv/clinvar-medgen.tsv is created 8.584028545135753 days ago (will be updated when >5 days) ## Update config/clinvar-medgen/config.yaml => output/tsv/clinvar-medgen.tsv -< 2024-05-25T14:07:04 clinvar-medgen +< 2024-06-03T04:08:05 clinvar-medgen togoid-config config/clinvar-medgen update # Success: output/tsv/clinvar-medgen.tsv is updated -> 2024-05-25T14:07:05 clinvar-medgen +> 2024-06-03T04:08:06 clinvar-medgen Rule for TSV (output/tsv/clinvar-medgen.tsv) ------------------------------ Investigating output/tsv/clinvar-medgen.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:07:05 +0900 +timestamp: 2024-06-03 04:08:06 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for cog-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -914,8 +903,8 @@ task needed: true timestamp: 2023-07-28 17:55:29 +0900 pre-requisites: --output/tsv/ () ---prepare:cog (2024-05-25 14:07:05 +0900) -latest-prerequisite time: 2024-05-25 14:07:05 +0900 +--prepare:cog (2024-06-03 04:08:06 +0900) +latest-prerequisite time: 2024-06-03 04:08:06 +0900 ................................ ### Update TSV for cog-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -930,163 +919,163 @@ task needed: true timestamp: 2023-07-28 17:55:40 +0900 pre-requisites: --output/tsv/ () ---prepare:cog (2024-05-25 14:07:05 +0900) -latest-prerequisite time: 2024-05-25 14:07:05 +0900 +--prepare:cog (2024-06-03 04:08:06 +0900) +latest-prerequisite time: 2024-06-03 04:08:06 +0900 ................................ ### Update TSV for doid-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-mesh.tsv is newer than config/doid-mesh/config.yaml # File output/tsv/doid-mesh.tsv has no timestamp file -# File output/tsv/doid-mesh.tsv is created 7.459410151928333 days ago (will be updated when >5 days) +# File output/tsv/doid-mesh.tsv is created 8.584037026705648 days ago (will be updated when >5 days) ## Update config/doid-mesh/config.yaml => output/tsv/doid-mesh.tsv -< 2024-05-25T14:07:05 doid-mesh +< 2024-06-03T04:08:06 doid-mesh togoid-config config/doid-mesh update # Success: output/tsv/doid-mesh.tsv is updated -> 2024-05-25T14:07:06 doid-mesh +> 2024-06-03T04:08:07 doid-mesh Rule for TSV (output/tsv/doid-mesh.tsv) ------------------------------ Investigating output/tsv/doid-mesh.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:07:06 +0900 +timestamp: 2024-06-03 04:08:07 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for doid-ncit_disease if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-ncit_disease.tsv is newer than config/doid-ncit_disease/config.yaml # File output/tsv/doid-ncit_disease.tsv has no timestamp file -# File output/tsv/doid-ncit_disease.tsv is created 7.459410243277859 days ago (will be updated when >5 days) +# File output/tsv/doid-ncit_disease.tsv is created 8.584045398323749 days ago (will be updated when >5 days) ## Update config/doid-ncit_disease/config.yaml => output/tsv/doid-ncit_disease.tsv -< 2024-05-25T14:07:06 doid-ncit_disease +< 2024-06-03T04:08:07 doid-ncit_disease togoid-config config/doid-ncit_disease update # Success: output/tsv/doid-ncit_disease.tsv is updated -> 2024-05-25T14:07:06 doid-ncit_disease +> 2024-06-03T04:08:08 doid-ncit_disease Rule for TSV (output/tsv/doid-ncit_disease.tsv) ------------------------------ Investigating output/tsv/doid-ncit_disease.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:07:06 +0900 +timestamp: 2024-06-03 04:08:08 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for doid-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-omim_phenotype.tsv is newer than config/doid-omim_phenotype/config.yaml # File output/tsv/doid-omim_phenotype.tsv has no timestamp file -# File output/tsv/doid-omim_phenotype.tsv is created 7.4594097534216095 days ago (will be updated when >5 days) +# File output/tsv/doid-omim_phenotype.tsv is created 8.584046635041354 days ago (will be updated when >5 days) ## Update config/doid-omim_phenotype/config.yaml => output/tsv/doid-omim_phenotype.tsv -< 2024-05-25T14:07:06 doid-omim_phenotype +< 2024-06-03T04:08:08 doid-omim_phenotype togoid-config config/doid-omim_phenotype update # Success: output/tsv/doid-omim_phenotype.tsv is updated -> 2024-05-25T14:07:06 doid-omim_phenotype +> 2024-06-03T04:08:09 doid-omim_phenotype Rule for TSV (output/tsv/doid-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/doid-omim_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:07:06 +0900 +timestamp: 2024-06-03 04:08:09 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for ensembl_gene-affy_probeset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-affy_probeset.tsv is newer than config/ensembl_gene-affy_probeset/config.yaml # File output/tsv/ensembl_gene-affy_probeset.tsv has no timestamp file -# File output/tsv/ensembl_gene-affy_probeset.tsv is created 7.458889874687407 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-affy_probeset.tsv is created 8.583463848193807 days ago (will be updated when >5 days) ## Update config/ensembl_gene-affy_probeset/config.yaml => output/tsv/ensembl_gene-affy_probeset.tsv -< 2024-05-25T14:07:06 ensembl_gene-affy_probeset +< 2024-06-03T04:08:09 ensembl_gene-affy_probeset togoid-config config/ensembl_gene-affy_probeset update # Success: output/tsv/ensembl_gene-affy_probeset.tsv is updated -> 2024-05-25T14:07:57 ensembl_gene-affy_probeset +> 2024-06-03T04:09:03 ensembl_gene-affy_probeset Rule for TSV (output/tsv/ensembl_gene-affy_probeset.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-affy_probeset.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 14:07:57 +0900 +timestamp: 2024-06-03 04:09:03 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-05-25 14:07:57 +0900) -latest-prerequisite time: 2024-05-25 14:07:57 +0900 +--prepare:ensembl (2024-06-03 04:09:03 +0900) +latest-prerequisite time: 2024-06-03 04:09:03 +0900 ................................ ### Update TSV for ensembl_gene-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ensembl_protein.tsv is newer than config/ensembl_gene-ensembl_protein/config.yaml # File output/tsv/ensembl_gene-ensembl_protein.tsv has no timestamp file -# File output/tsv/ensembl_gene-ensembl_protein.tsv is created 7.458140775650961 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ensembl_protein.tsv is created 8.582798505578923 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ensembl_protein/config.yaml => output/tsv/ensembl_gene-ensembl_protein.tsv -< 2024-05-25T14:07:57 ensembl_gene-ensembl_protein +< 2024-06-03T04:09:03 ensembl_gene-ensembl_protein togoid-config config/ensembl_gene-ensembl_protein update # Success: output/tsv/ensembl_gene-ensembl_protein.tsv is updated -> 2024-05-25T14:09:50 ensembl_gene-ensembl_protein +> 2024-06-03T04:11:03 ensembl_gene-ensembl_protein Rule for TSV (output/tsv/ensembl_gene-ensembl_protein.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-ensembl_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 14:09:50 +0900 +timestamp: 2024-06-03 04:11:03 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-05-25 14:09:50 +0900) -latest-prerequisite time: 2024-05-25 14:09:50 +0900 +--prepare:ensembl (2024-06-03 04:11:03 +0900) +latest-prerequisite time: 2024-06-03 04:11:03 +0900 ................................ ### Update TSV for ensembl_gene-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ensembl_transcript.tsv is newer than config/ensembl_gene-ensembl_transcript/config.yaml # File output/tsv/ensembl_gene-ensembl_transcript.tsv has no timestamp file -# File output/tsv/ensembl_gene-ensembl_transcript.tsv is created 7.457952893208218 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ensembl_transcript.tsv is created 8.582706589070556 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ensembl_transcript/config.yaml => output/tsv/ensembl_gene-ensembl_transcript.tsv -< 2024-05-25T14:09:50 ensembl_gene-ensembl_transcript +< 2024-06-03T04:11:03 ensembl_gene-ensembl_transcript togoid-config config/ensembl_gene-ensembl_transcript update # Success: output/tsv/ensembl_gene-ensembl_transcript.tsv is updated -> 2024-05-25T14:11:57 ensembl_gene-ensembl_transcript +> 2024-06-03T04:13:10 ensembl_gene-ensembl_transcript Rule for TSV (output/tsv/ensembl_gene-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 14:11:57 +0900 +timestamp: 2024-06-03 04:13:10 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-05-25 14:11:57 +0900) -latest-prerequisite time: 2024-05-25 14:11:57 +0900 +--prepare:ensembl (2024-06-03 04:13:10 +0900) +latest-prerequisite time: 2024-06-03 04:13:10 +0900 ................................ ### Update TSV for ensembl_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-hgnc.tsv is newer than config/ensembl_gene-hgnc/config.yaml # File output/tsv/ensembl_gene-hgnc.tsv has no timestamp file -# File output/tsv/ensembl_gene-hgnc.tsv is created 7.459426884128508 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-hgnc.tsv is created 8.584166180027397 days ago (will be updated when >5 days) ## Update config/ensembl_gene-hgnc/config.yaml => output/tsv/ensembl_gene-hgnc.tsv -< 2024-05-25T14:11:57 ensembl_gene-hgnc +< 2024-06-03T04:13:10 ensembl_gene-hgnc togoid-config config/ensembl_gene-hgnc update # Success: output/tsv/ensembl_gene-hgnc.tsv is updated -> 2024-05-25T14:11:58 ensembl_gene-hgnc +> 2024-06-03T04:13:11 ensembl_gene-hgnc Rule for TSV (output/tsv/ensembl_gene-hgnc.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 14:11:58 +0900 +timestamp: 2024-06-03 04:13:11 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-05-25 14:11:58 +0900) -latest-prerequisite time: 2024-05-25 14:11:58 +0900 +--prepare:ensembl (2024-06-03 04:13:11 +0900) +latest-prerequisite time: 2024-06-03 04:13:11 +0900 ................................ ### Update TSV for ensembl_gene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ncbigene.tsv is newer than config/ensembl_gene-ncbigene/config.yaml # File output/tsv/ensembl_gene-ncbigene.tsv has no timestamp file -# File output/tsv/ensembl_gene-ncbigene.tsv is created 7.458068325652998 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ncbigene.tsv is created 8.582836165407997 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ncbigene/config.yaml => output/tsv/ensembl_gene-ncbigene.tsv -< 2024-05-25T14:11:58 ensembl_gene-ncbigene +< 2024-06-03T04:13:11 ensembl_gene-ncbigene togoid-config config/ensembl_gene-ncbigene update Warning: Failed to retrieve taxon:8840 in loop_count:1 Warning: Failed to retrieve taxon:9771 in loop_count:1 @@ -1152,25 +1141,25 @@ Warning: Failed to retrieve taxon:99837 in loop_count:1 Warning: Failed to retrieve taxon:37032 in loop_count:1 Warning: Failed to retrieve taxon:181631 in loop_count:1 # Success: output/tsv/ensembl_gene-ncbigene.tsv is updated -> 2024-05-25T14:13:53 ensembl_gene-ncbigene +> 2024-06-03T04:15:03 ensembl_gene-ncbigene Rule for TSV (output/tsv/ensembl_gene-ncbigene.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 14:13:53 +0900 +timestamp: 2024-06-03 04:15:03 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-05-25 14:13:53 +0900) -latest-prerequisite time: 2024-05-25 14:13:53 +0900 +--prepare:ensembl (2024-06-03 04:15:03 +0900) +latest-prerequisite time: 2024-06-03 04:15:03 +0900 ................................ ### Update TSV for ensembl_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-uniprot.tsv is newer than config/ensembl_gene-uniprot/config.yaml # File output/tsv/ensembl_gene-uniprot.tsv has no timestamp file -# File output/tsv/ensembl_gene-uniprot.tsv is created 7.458483666449839 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-uniprot.tsv is created 8.583055961983993 days ago (will be updated when >5 days) ## Update config/ensembl_gene-uniprot/config.yaml => output/tsv/ensembl_gene-uniprot.tsv -< 2024-05-25T14:13:53 ensembl_gene-uniprot +< 2024-06-03T04:15:03 ensembl_gene-uniprot togoid-config config/ensembl_gene-uniprot update Warning: Failed to retrieve taxon:9771 in loop_count:1 Warning: Failed to retrieve taxon:8823 in loop_count:1 @@ -1229,109 +1218,109 @@ Warning: Failed to retrieve taxon:37032 in loop_count:1 Warning: Failed to retrieve taxon:181631 in loop_count:1 Warning: Failed to retrieve taxon:9999 in loop_count:1 # Success: output/tsv/ensembl_gene-uniprot.tsv is updated -> 2024-05-25T14:15:27 ensembl_gene-uniprot +> 2024-06-03T04:16:24 ensembl_gene-uniprot Rule for TSV (output/tsv/ensembl_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 14:15:27 +0900 +timestamp: 2024-06-03 04:16:24 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-05-25 14:15:27 +0900) -latest-prerequisite time: 2024-05-25 14:15:27 +0900 +--prepare:ensembl (2024-06-03 04:16:24 +0900) +latest-prerequisite time: 2024-06-03 04:16:24 +0900 ................................ ### Update TSV for ensembl_protein-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_protein-ensembl_transcript.tsv is newer than config/ensembl_protein-ensembl_transcript/config.yaml # File output/tsv/ensembl_protein-ensembl_transcript.tsv has no timestamp file -# File output/tsv/ensembl_protein-ensembl_transcript.tsv is created 7.458294103584896 days ago (will be updated when >5 days) +# File output/tsv/ensembl_protein-ensembl_transcript.tsv is created 8.582662948805602 days ago (will be updated when >5 days) ## Update config/ensembl_protein-ensembl_transcript/config.yaml => output/tsv/ensembl_protein-ensembl_transcript.tsv -< 2024-05-25T14:15:27 ensembl_protein-ensembl_transcript +< 2024-06-03T04:16:24 ensembl_protein-ensembl_transcript togoid-config config/ensembl_protein-ensembl_transcript update # Success: output/tsv/ensembl_protein-ensembl_transcript.tsv is updated -> 2024-05-25T14:17:22 ensembl_protein-ensembl_transcript +> 2024-06-03T04:18:17 ensembl_protein-ensembl_transcript Rule for TSV (output/tsv/ensembl_protein-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/ensembl_protein-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 14:17:22 +0900 +timestamp: 2024-06-03 04:18:17 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-05-25 14:17:22 +0900) -latest-prerequisite time: 2024-05-25 14:17:22 +0900 +--prepare:ensembl (2024-06-03 04:18:17 +0900) +latest-prerequisite time: 2024-06-03 04:18:17 +0900 ................................ ### Update TSV for ensembl_transcript-affy_probeset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-affy_probeset.tsv is newer than config/ensembl_transcript-affy_probeset/config.yaml # File output/tsv/ensembl_transcript-affy_probeset.tsv has no timestamp file -# File output/tsv/ensembl_transcript-affy_probeset.tsv is created 7.45914571727368 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-affy_probeset.tsv is created 8.583428072951065 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-affy_probeset/config.yaml => output/tsv/ensembl_transcript-affy_probeset.tsv -< 2024-05-25T14:17:22 ensembl_transcript-affy_probeset +< 2024-06-03T04:18:17 ensembl_transcript-affy_probeset togoid-config config/ensembl_transcript-affy_probeset update # Success: output/tsv/ensembl_transcript-affy_probeset.tsv is updated -> 2024-05-25T14:18:09 ensembl_transcript-affy_probeset +> 2024-06-03T04:19:13 ensembl_transcript-affy_probeset Rule for TSV (output/tsv/ensembl_transcript-affy_probeset.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-affy_probeset.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 14:18:09 +0900 +timestamp: 2024-06-03 04:19:13 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-05-25 14:18:09 +0900) -latest-prerequisite time: 2024-05-25 14:18:09 +0900 +--prepare:ensembl (2024-06-03 04:19:13 +0900) +latest-prerequisite time: 2024-06-03 04:19:13 +0900 ................................ ### Update TSV for ensembl_transcript-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-go.tsv is newer than config/ensembl_transcript-go/config.yaml # File output/tsv/ensembl_transcript-go.tsv has no timestamp file -# File output/tsv/ensembl_transcript-go.tsv is created 7.4568874447185065 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-go.tsv is created 8.581342555528101 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-go/config.yaml => output/tsv/ensembl_transcript-go.tsv -< 2024-05-25T14:18:09 ensembl_transcript-go +< 2024-06-03T04:19:13 ensembl_transcript-go togoid-config config/ensembl_transcript-go update # Success: output/tsv/ensembl_transcript-go.tsv is updated -> 2024-05-25T14:22:05 ensembl_transcript-go +> 2024-06-03T04:23:23 ensembl_transcript-go Rule for TSV (output/tsv/ensembl_transcript-go.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 14:22:05 +0900 +timestamp: 2024-06-03 04:23:23 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-05-25 14:22:05 +0900) -latest-prerequisite time: 2024-05-25 14:22:05 +0900 +--prepare:ensembl (2024-06-03 04:23:23 +0900) +latest-prerequisite time: 2024-06-03 04:23:23 +0900 ................................ ### Update TSV for ensembl_transcript-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-hgnc.tsv is newer than config/ensembl_transcript-hgnc/config.yaml # File output/tsv/ensembl_transcript-hgnc.tsv has no timestamp file -# File output/tsv/ensembl_transcript-hgnc.tsv is created 7.459606818227349 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-hgnc.tsv is created 8.58421936750301 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-hgnc/config.yaml => output/tsv/ensembl_transcript-hgnc.tsv -< 2024-05-25T14:22:05 ensembl_transcript-hgnc +< 2024-06-03T04:23:23 ensembl_transcript-hgnc togoid-config config/ensembl_transcript-hgnc update # Success: output/tsv/ensembl_transcript-hgnc.tsv is updated -> 2024-05-25T14:22:06 ensembl_transcript-hgnc +> 2024-06-03T04:23:23 ensembl_transcript-hgnc Rule for TSV (output/tsv/ensembl_transcript-hgnc.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 14:22:06 +0900 +timestamp: 2024-06-03 04:23:23 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-05-25 14:22:06 +0900) -latest-prerequisite time: 2024-05-25 14:22:06 +0900 +--prepare:ensembl (2024-06-03 04:23:23 +0900) +latest-prerequisite time: 2024-06-03 04:23:23 +0900 ................................ ### Update TSV for ensembl_transcript-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-refseq_rna.tsv is newer than config/ensembl_transcript-refseq_rna/config.yaml # File output/tsv/ensembl_transcript-refseq_rna.tsv has no timestamp file -# File output/tsv/ensembl_transcript-refseq_rna.tsv is created 7.457306206206898 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-refseq_rna.tsv is created 8.581869226391262 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-refseq_rna/config.yaml => output/tsv/ensembl_transcript-refseq_rna.tsv -< 2024-05-25T14:22:06 ensembl_transcript-refseq_rna +< 2024-06-03T04:23:23 ensembl_transcript-refseq_rna togoid-config config/ensembl_transcript-refseq_rna update Warning: Failed to retrieve taxon:8840 in loop_count:1 Warning: Failed to retrieve taxon:9771 in loop_count:1 @@ -1402,71 +1391,71 @@ Warning: Failed to retrieve taxon:99837 in loop_count:1 Warning: Failed to retrieve taxon:181631 in loop_count:1 Warning: Failed to retrieve taxon:99883 in loop_count:1 # Success: output/tsv/ensembl_transcript-refseq_rna.tsv is updated -> 2024-05-25T14:25:30 ensembl_transcript-refseq_rna +> 2024-06-03T04:26:52 ensembl_transcript-refseq_rna Rule for TSV (output/tsv/ensembl_transcript-refseq_rna.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-refseq_rna.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 14:25:30 +0900 +timestamp: 2024-06-03 04:26:52 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-05-25 14:25:30 +0900) -latest-prerequisite time: 2024-05-25 14:25:30 +0900 +--prepare:ensembl (2024-06-03 04:26:52 +0900) +latest-prerequisite time: 2024-06-03 04:26:52 +0900 ................................ ### Update TSV for gea-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/gea-bioproject.tsv is newer than config/gea-bioproject/config.yaml # File output/tsv/gea-bioproject.tsv has no timestamp file -# File output/tsv/gea-bioproject.tsv is created 7.459663485205024 days ago (will be updated when >5 days) +# File output/tsv/gea-bioproject.tsv is created 8.584276257881978 days ago (will be updated when >5 days) ## Update config/gea-bioproject/config.yaml => output/tsv/gea-bioproject.tsv -< 2024-05-25T14:25:30 gea-bioproject +< 2024-06-03T04:26:52 gea-bioproject togoid-config config/gea-bioproject update # Success: output/tsv/gea-bioproject.tsv is updated -> 2024-05-25T14:25:30 gea-bioproject +> 2024-06-03T04:26:52 gea-bioproject Rule for TSV (output/tsv/gea-bioproject.tsv) ------------------------------ Investigating output/tsv/gea-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:30 +0900 +timestamp: 2024-06-03 04:26:52 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for gea-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/gea-biosample.tsv is newer than config/gea-biosample/config.yaml # File output/tsv/gea-biosample.tsv has no timestamp file -# File output/tsv/gea-biosample.tsv is created 7.459662201392372 days ago (will be updated when >5 days) +# File output/tsv/gea-biosample.tsv is created 8.584275748178818 days ago (will be updated when >5 days) ## Update config/gea-biosample/config.yaml => output/tsv/gea-biosample.tsv -< 2024-05-25T14:25:30 gea-biosample +< 2024-06-03T04:26:52 gea-biosample togoid-config config/gea-biosample update # Success: output/tsv/gea-biosample.tsv is updated -> 2024-05-25T14:25:31 gea-biosample +> 2024-06-03T04:26:53 gea-biosample Rule for TSV (output/tsv/gea-biosample.tsv) ------------------------------ Investigating output/tsv/gea-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:31 +0900 +timestamp: 2024-06-03 04:26:53 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for glytoucan-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-doid.tsv is newer than config/glytoucan-doid/config.yaml # File output/tsv/glytoucan-doid.tsv has no timestamp file -# File output/tsv/glytoucan-doid.tsv is created 63.73837948673589 days ago (will be updated when >5 days) +# File output/tsv/glytoucan-doid.tsv is created 72.32266071060089 days ago (will be updated when >5 days) ## Update config/glytoucan-doid/config.yaml => output/tsv/glytoucan-doid.tsv -< 2024-05-25T14:25:31 glytoucan-doid +< 2024-06-03T04:26:53 glytoucan-doid togoid-config config/glytoucan-doid update # Error: output/tsv/glytoucan-doid.tsv new file size per old 1596 / 4376 = 0.3647166361974406 < 0.5 # Failure: output/tsv/glytoucan-doid.tsv is not updated -> 2024-05-25T14:25:37 glytoucan-doid +> 2024-06-03T04:26:59 glytoucan-doid Rule for TSV (output/tsv/glytoucan-doid.tsv) ------------------------------ Investigating output/tsv/glytoucan-doid.tsv @@ -1475,344 +1464,344 @@ task needed: true timestamp: 2024-03-22 20:42:15 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for glytoucan-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-ncbigene.tsv is newer than config/glytoucan-ncbigene/config.yaml # File output/tsv/glytoucan-ncbigene.tsv has no timestamp file -# File output/tsv/glytoucan-ncbigene.tsv is created 7.4596628067219095 days ago (will be updated when >5 days) +# File output/tsv/glytoucan-ncbigene.tsv is created 8.584266860725359 days ago (will be updated when >5 days) ## Update config/glytoucan-ncbigene/config.yaml => output/tsv/glytoucan-ncbigene.tsv -< 2024-05-25T14:25:37 glytoucan-ncbigene +< 2024-06-03T04:26:59 glytoucan-ncbigene togoid-config config/glytoucan-ncbigene update # Success: output/tsv/glytoucan-ncbigene.tsv is updated -> 2024-05-25T14:25:38 glytoucan-ncbigene +> 2024-06-03T04:27:00 glytoucan-ncbigene Rule for TSV (output/tsv/glytoucan-ncbigene.tsv) ------------------------------ Investigating output/tsv/glytoucan-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:38 +0900 +timestamp: 2024-06-03 04:27:00 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for glytoucan-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-uniprot.tsv is newer than config/glytoucan-uniprot/config.yaml # File output/tsv/glytoucan-uniprot.tsv has no timestamp file -# File output/tsv/glytoucan-uniprot.tsv is created 7.459655938240614 days ago (will be updated when >5 days) +# File output/tsv/glytoucan-uniprot.tsv is created 8.58426047289949 days ago (will be updated when >5 days) ## Update config/glytoucan-uniprot/config.yaml => output/tsv/glytoucan-uniprot.tsv -< 2024-05-25T14:25:38 glytoucan-uniprot +< 2024-06-03T04:27:00 glytoucan-uniprot togoid-config config/glytoucan-uniprot update # Success: output/tsv/glytoucan-uniprot.tsv is updated -> 2024-05-25T14:25:40 glytoucan-uniprot +> 2024-06-03T04:27:01 glytoucan-uniprot Rule for TSV (output/tsv/glytoucan-uniprot.tsv) ------------------------------ Investigating output/tsv/glytoucan-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:40 +0900 +timestamp: 2024-06-03 04:27:01 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hgnc-ccds if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ccds.tsv is newer than config/hgnc-ccds/config.yaml # File output/tsv/hgnc-ccds.tsv has no timestamp file -# File output/tsv/hgnc-ccds.tsv is created 7.4596670945924535 days ago (will be updated when >5 days) +# File output/tsv/hgnc-ccds.tsv is created 8.584271796511123 days ago (will be updated when >5 days) ## Update config/hgnc-ccds/config.yaml => output/tsv/hgnc-ccds.tsv -< 2024-05-25T14:25:40 hgnc-ccds +< 2024-06-03T04:27:01 hgnc-ccds togoid-config config/hgnc-ccds update # Success: output/tsv/hgnc-ccds.tsv is updated -> 2024-05-25T14:25:40 hgnc-ccds +> 2024-06-03T04:27:02 hgnc-ccds Rule for TSV (output/tsv/hgnc-ccds.tsv) ------------------------------ Investigating output/tsv/hgnc-ccds.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:40 +0900 +timestamp: 2024-06-03 04:27:02 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hgnc-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ec.tsv is newer than config/hgnc-ec/config.yaml # File output/tsv/hgnc-ec.tsv has no timestamp file -# File output/tsv/hgnc-ec.tsv is created 7.459668837192464 days ago (will be updated when >5 days) +# File output/tsv/hgnc-ec.tsv is created 8.58427233975971 days ago (will be updated when >5 days) ## Update config/hgnc-ec/config.yaml => output/tsv/hgnc-ec.tsv -< 2024-05-25T14:25:40 hgnc-ec +< 2024-06-03T04:27:02 hgnc-ec togoid-config config/hgnc-ec update # Success: output/tsv/hgnc-ec.tsv is updated -> 2024-05-25T14:25:40 hgnc-ec +> 2024-06-03T04:27:02 hgnc-ec Rule for TSV (output/tsv/hgnc-ec.tsv) ------------------------------ Investigating output/tsv/hgnc-ec.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:40 +0900 +timestamp: 2024-06-03 04:27:02 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hgnc-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ensembl_gene.tsv is newer than config/hgnc-ensembl_gene/config.yaml # File output/tsv/hgnc-ensembl_gene.tsv has no timestamp file -# File output/tsv/hgnc-ensembl_gene.tsv is created 7.459667390319398 days ago (will be updated when >5 days) +# File output/tsv/hgnc-ensembl_gene.tsv is created 8.584271799274086 days ago (will be updated when >5 days) ## Update config/hgnc-ensembl_gene/config.yaml => output/tsv/hgnc-ensembl_gene.tsv -< 2024-05-25T14:25:40 hgnc-ensembl_gene +< 2024-06-03T04:27:02 hgnc-ensembl_gene togoid-config config/hgnc-ensembl_gene update # Success: output/tsv/hgnc-ensembl_gene.tsv is updated -> 2024-05-25T14:25:41 hgnc-ensembl_gene +> 2024-06-03T04:27:03 hgnc-ensembl_gene Rule for TSV (output/tsv/hgnc-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/hgnc-ensembl_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:41 +0900 +timestamp: 2024-06-03 04:27:03 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hgnc-hgnc_symbol if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-hgnc_symbol.tsv is newer than config/hgnc-hgnc_symbol/config.yaml # File output/tsv/hgnc-hgnc_symbol.tsv has no timestamp file -# File output/tsv/hgnc-hgnc_symbol.tsv is created 7.4596681487289125 days ago (will be updated when >5 days) +# File output/tsv/hgnc-hgnc_symbol.tsv is created 8.58427214953632 days ago (will be updated when >5 days) ## Update config/hgnc-hgnc_symbol/config.yaml => output/tsv/hgnc-hgnc_symbol.tsv -< 2024-05-25T14:25:41 hgnc-hgnc_symbol +< 2024-06-03T04:27:03 hgnc-hgnc_symbol togoid-config config/hgnc-hgnc_symbol update # Success: output/tsv/hgnc-hgnc_symbol.tsv is updated -> 2024-05-25T14:25:41 hgnc-hgnc_symbol +> 2024-06-03T04:27:03 hgnc-hgnc_symbol Rule for TSV (output/tsv/hgnc-hgnc_symbol.tsv) ------------------------------ Investigating output/tsv/hgnc-hgnc_symbol.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:41 +0900 +timestamp: 2024-06-03 04:27:03 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hgnc-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-insdc.tsv is newer than config/hgnc-insdc/config.yaml # File output/tsv/hgnc-insdc.tsv has no timestamp file -# File output/tsv/hgnc-insdc.tsv is created 7.459668277698206 days ago (will be updated when >5 days) +# File output/tsv/hgnc-insdc.tsv is created 8.584272897556922 days ago (will be updated when >5 days) ## Update config/hgnc-insdc/config.yaml => output/tsv/hgnc-insdc.tsv -< 2024-05-25T14:25:41 hgnc-insdc +< 2024-06-03T04:27:03 hgnc-insdc togoid-config config/hgnc-insdc update # Success: output/tsv/hgnc-insdc.tsv is updated -> 2024-05-25T14:25:42 hgnc-insdc +> 2024-06-03T04:27:03 hgnc-insdc Rule for TSV (output/tsv/hgnc-insdc.tsv) ------------------------------ Investigating output/tsv/hgnc-insdc.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:42 +0900 +timestamp: 2024-06-03 04:27:03 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hgnc-lrg if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-lrg.tsv is newer than config/hgnc-lrg/config.yaml # File output/tsv/hgnc-lrg.tsv has no timestamp file -# File output/tsv/hgnc-lrg.tsv is created 7.4596689576309725 days ago (will be updated when >5 days) +# File output/tsv/hgnc-lrg.tsv is created 8.584271918630394 days ago (will be updated when >5 days) ## Update config/hgnc-lrg/config.yaml => output/tsv/hgnc-lrg.tsv -< 2024-05-25T14:25:42 hgnc-lrg +< 2024-06-03T04:27:03 hgnc-lrg togoid-config config/hgnc-lrg update # Success: output/tsv/hgnc-lrg.tsv is updated -> 2024-05-25T14:25:42 hgnc-lrg +> 2024-06-03T04:27:04 hgnc-lrg Rule for TSV (output/tsv/hgnc-lrg.tsv) ------------------------------ Investigating output/tsv/hgnc-lrg.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:42 +0900 +timestamp: 2024-06-03 04:27:04 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hgnc-mgi_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-mgi_gene.tsv is newer than config/hgnc-mgi_gene/config.yaml # File output/tsv/hgnc-mgi_gene.tsv has no timestamp file -# File output/tsv/hgnc-mgi_gene.tsv is created 7.459669057014607 days ago (will be updated when >5 days) +# File output/tsv/hgnc-mgi_gene.tsv is created 8.584270898312282 days ago (will be updated when >5 days) ## Update config/hgnc-mgi_gene/config.yaml => output/tsv/hgnc-mgi_gene.tsv -< 2024-05-25T14:25:42 hgnc-mgi_gene +< 2024-06-03T04:27:04 hgnc-mgi_gene togoid-config config/hgnc-mgi_gene update # Success: output/tsv/hgnc-mgi_gene.tsv is updated -> 2024-05-25T14:25:43 hgnc-mgi_gene +> 2024-06-03T04:27:05 hgnc-mgi_gene Rule for TSV (output/tsv/hgnc-mgi_gene.tsv) ------------------------------ Investigating output/tsv/hgnc-mgi_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:43 +0900 +timestamp: 2024-06-03 04:27:05 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hgnc-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-mirbase.tsv is newer than config/hgnc-mirbase/config.yaml # File output/tsv/hgnc-mirbase.tsv has no timestamp file -# File output/tsv/hgnc-mirbase.tsv is created 7.4596701390883915 days ago (will be updated when >5 days) +# File output/tsv/hgnc-mirbase.tsv is created 8.584280435302396 days ago (will be updated when >5 days) ## Update config/hgnc-mirbase/config.yaml => output/tsv/hgnc-mirbase.tsv -< 2024-05-25T14:25:43 hgnc-mirbase +< 2024-06-03T04:27:05 hgnc-mirbase togoid-config config/hgnc-mirbase update # Success: output/tsv/hgnc-mirbase.tsv is updated -> 2024-05-25T14:25:43 hgnc-mirbase +> 2024-06-03T04:27:05 hgnc-mirbase Rule for TSV (output/tsv/hgnc-mirbase.tsv) ------------------------------ Investigating output/tsv/hgnc-mirbase.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:43 +0900 +timestamp: 2024-06-03 04:27:05 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hgnc-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ncbigene.tsv is newer than config/hgnc-ncbigene/config.yaml # File output/tsv/hgnc-ncbigene.tsv has no timestamp file -# File output/tsv/hgnc-ncbigene.tsv is created 7.459664993833437 days ago (will be updated when >5 days) +# File output/tsv/hgnc-ncbigene.tsv is created 8.584279153066227 days ago (will be updated when >5 days) ## Update config/hgnc-ncbigene/config.yaml => output/tsv/hgnc-ncbigene.tsv -< 2024-05-25T14:25:43 hgnc-ncbigene +< 2024-06-03T04:27:05 hgnc-ncbigene togoid-config config/hgnc-ncbigene update # Success: output/tsv/hgnc-ncbigene.tsv is updated -> 2024-05-25T14:25:44 hgnc-ncbigene +> 2024-06-03T04:27:06 hgnc-ncbigene Rule for TSV (output/tsv/hgnc-ncbigene.tsv) ------------------------------ Investigating output/tsv/hgnc-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:44 +0900 +timestamp: 2024-06-03 04:27:06 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hgnc-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-omim_gene.tsv is newer than config/hgnc-omim_gene/config.yaml # File output/tsv/hgnc-omim_gene.tsv has no timestamp file -# File output/tsv/hgnc-omim_gene.tsv is created 7.45966519866985 days ago (will be updated when >5 days) +# File output/tsv/hgnc-omim_gene.tsv is created 8.584279574998403 days ago (will be updated when >5 days) ## Update config/hgnc-omim_gene/config.yaml => output/tsv/hgnc-omim_gene.tsv -< 2024-05-25T14:25:44 hgnc-omim_gene +< 2024-06-03T04:27:06 hgnc-omim_gene togoid-config config/hgnc-omim_gene update # Success: output/tsv/hgnc-omim_gene.tsv is updated -> 2024-05-25T14:25:44 hgnc-omim_gene +> 2024-06-03T04:27:06 hgnc-omim_gene Rule for TSV (output/tsv/hgnc-omim_gene.tsv) ------------------------------ Investigating output/tsv/hgnc-omim_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:44 +0900 +timestamp: 2024-06-03 04:27:06 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hgnc-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-pubmed.tsv is newer than config/hgnc-pubmed/config.yaml # File output/tsv/hgnc-pubmed.tsv has no timestamp file -# File output/tsv/hgnc-pubmed.tsv is created 7.459665518104282 days ago (will be updated when >5 days) +# File output/tsv/hgnc-pubmed.tsv is created 8.584274338829653 days ago (will be updated when >5 days) ## Update config/hgnc-pubmed/config.yaml => output/tsv/hgnc-pubmed.tsv -< 2024-05-25T14:25:44 hgnc-pubmed +< 2024-06-03T04:27:06 hgnc-pubmed togoid-config config/hgnc-pubmed update # Success: output/tsv/hgnc-pubmed.tsv is updated -> 2024-05-25T14:25:45 hgnc-pubmed +> 2024-06-03T04:27:07 hgnc-pubmed Rule for TSV (output/tsv/hgnc-pubmed.tsv) ------------------------------ Investigating output/tsv/hgnc-pubmed.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:45 +0900 +timestamp: 2024-06-03 04:27:07 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hgnc-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-refseq_rna.tsv is newer than config/hgnc-refseq_rna/config.yaml # File output/tsv/hgnc-refseq_rna.tsv has no timestamp file -# File output/tsv/hgnc-refseq_rna.tsv is created 7.459669726823681 days ago (will be updated when >5 days) +# File output/tsv/hgnc-refseq_rna.tsv is created 8.58427379429934 days ago (will be updated when >5 days) ## Update config/hgnc-refseq_rna/config.yaml => output/tsv/hgnc-refseq_rna.tsv -< 2024-05-25T14:25:45 hgnc-refseq_rna +< 2024-06-03T04:27:07 hgnc-refseq_rna togoid-config config/hgnc-refseq_rna update # Success: output/tsv/hgnc-refseq_rna.tsv is updated -> 2024-05-25T14:25:45 hgnc-refseq_rna +> 2024-06-03T04:27:07 hgnc-refseq_rna Rule for TSV (output/tsv/hgnc-refseq_rna.tsv) ------------------------------ Investigating output/tsv/hgnc-refseq_rna.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:45 +0900 +timestamp: 2024-06-03 04:27:07 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hgnc-rgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-rgd.tsv is newer than config/hgnc-rgd/config.yaml # File output/tsv/hgnc-rgd.tsv has no timestamp file -# File output/tsv/hgnc-rgd.tsv is created 7.45967058333309 days ago (will be updated when >5 days) +# File output/tsv/hgnc-rgd.tsv is created 8.58427258132831 days ago (will be updated when >5 days) ## Update config/hgnc-rgd/config.yaml => output/tsv/hgnc-rgd.tsv -< 2024-05-25T14:25:46 hgnc-rgd +< 2024-06-03T04:27:07 hgnc-rgd togoid-config config/hgnc-rgd update # Success: output/tsv/hgnc-rgd.tsv is updated -> 2024-05-25T14:25:46 hgnc-rgd +> 2024-06-03T04:27:08 hgnc-rgd Rule for TSV (output/tsv/hgnc-rgd.tsv) ------------------------------ Investigating output/tsv/hgnc-rgd.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:46 +0900 +timestamp: 2024-06-03 04:27:08 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hgnc-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-uniprot.tsv is newer than config/hgnc-uniprot/config.yaml # File output/tsv/hgnc-uniprot.tsv has no timestamp file -# File output/tsv/hgnc-uniprot.tsv is created 7.459671783649734 days ago (will be updated when >5 days) +# File output/tsv/hgnc-uniprot.tsv is created 8.584271865260348 days ago (will be updated when >5 days) ## Update config/hgnc-uniprot/config.yaml => output/tsv/hgnc-uniprot.tsv -< 2024-05-25T14:25:46 hgnc-uniprot +< 2024-06-03T04:27:08 hgnc-uniprot togoid-config config/hgnc-uniprot update # Success: output/tsv/hgnc-uniprot.tsv is updated -> 2024-05-25T14:25:46 hgnc-uniprot +> 2024-06-03T04:27:08 hgnc-uniprot Rule for TSV (output/tsv/hgnc-uniprot.tsv) ------------------------------ Investigating output/tsv/hgnc-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:46 +0900 +timestamp: 2024-06-03 04:27:08 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hmdb-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1827,8 +1816,8 @@ task needed: true timestamp: 2023-07-03 13:03:28 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-05-25 14:25:46 +0900) -latest-prerequisite time: 2024-05-25 14:25:46 +0900 +--prepare:hmdb (2024-06-03 04:27:08 +0900) +latest-prerequisite time: 2024-06-03 04:27:08 +0900 ................................ ### Update TSV for hmdb-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1843,8 +1832,8 @@ task needed: true timestamp: 2023-07-03 13:03:51 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-05-25 14:25:46 +0900) -latest-prerequisite time: 2024-05-25 14:25:46 +0900 +--prepare:hmdb (2024-06-03 04:27:08 +0900) +latest-prerequisite time: 2024-06-03 04:27:08 +0900 ................................ ### Update TSV for hmdb-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1859,8 +1848,8 @@ task needed: true timestamp: 2024-01-20 02:10:47 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-05-25 14:25:47 +0900) -latest-prerequisite time: 2024-05-25 14:25:47 +0900 +--prepare:hmdb (2024-06-03 04:27:08 +0900) +latest-prerequisite time: 2024-06-03 04:27:08 +0900 ................................ ### Update TSV for hmdb-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1875,8 +1864,8 @@ task needed: true timestamp: 2023-07-03 13:06:27 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-05-25 14:25:47 +0900) -latest-prerequisite time: 2024-05-25 14:25:47 +0900 +--prepare:hmdb (2024-06-03 04:27:08 +0900) +latest-prerequisite time: 2024-06-03 04:27:08 +0900 ................................ ### Update TSV for homologene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1891,29 +1880,29 @@ task needed: true timestamp: 2023-06-02 19:58:16 +0900 pre-requisites: --output/tsv/ () ---prepare:homologene (2024-05-25 14:25:47 +0900) -latest-prerequisite time: 2024-05-25 14:25:47 +0900 +--prepare:homologene (2024-06-03 04:27:08 +0900) +latest-prerequisite time: 2024-06-03 04:27:08 +0900 ................................ ### Update TSV for hp_inheritance-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hp_inheritance-omim_phenotype.tsv is newer than config/hp_inheritance-omim_phenotype/config.yaml # File output/tsv/hp_inheritance-omim_phenotype.tsv has no timestamp file -# File output/tsv/hp_inheritance-omim_phenotype.tsv is created 7.459658292746794 days ago (will be updated when >5 days) +# File output/tsv/hp_inheritance-omim_phenotype.tsv is created 8.584264863848045 days ago (will be updated when >5 days) ## Update config/hp_inheritance-omim_phenotype/config.yaml => output/tsv/hp_inheritance-omim_phenotype.tsv -< 2024-05-25T14:25:47 hp_inheritance-omim_phenotype +< 2024-06-03T04:27:08 hp_inheritance-omim_phenotype togoid-config config/hp_inheritance-omim_phenotype update # Success: output/tsv/hp_inheritance-omim_phenotype.tsv is updated -> 2024-05-25T14:25:47 hp_inheritance-omim_phenotype +> 2024-06-03T04:27:10 hp_inheritance-omim_phenotype Rule for TSV (output/tsv/hp_inheritance-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/hp_inheritance-omim_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:25:47 +0900 +timestamp: 2024-06-03 04:27:10 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for hp_phenotype-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1928,8 +1917,8 @@ task needed: true timestamp: 2024-05-03 20:30:31 +0900 pre-requisites: --output/tsv/ () ---prepare:hp_phenotype (2024-05-25 14:25:47 +0900) -latest-prerequisite time: 2024-05-25 14:25:47 +0900 +--prepare:hp_phenotype (2024-06-03 04:27:10 +0900) +latest-prerequisite time: 2024-06-03 04:27:10 +0900 ................................ ### Update TSV for hp_phenotype-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1944,354 +1933,386 @@ task needed: true timestamp: 2024-05-03 20:30:31 +0900 pre-requisites: --output/tsv/ () ---prepare:hp_phenotype (2024-05-25 14:25:47 +0900) -latest-prerequisite time: 2024-05-25 14:25:47 +0900 +--prepare:hp_phenotype (2024-06-03 04:27:10 +0900) +latest-prerequisite time: 2024-06-03 04:27:10 +0900 ................................ ### Update TSV for insdc-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc-bioproject.tsv is newer than config/insdc-bioproject/config.yaml # File output/tsv/insdc-bioproject.tsv has no timestamp file -# File output/tsv/insdc-bioproject.tsv is created 7.45940212422316 days ago (will be updated when >5 days) +# File output/tsv/insdc-bioproject.tsv is created 8.584019173173843 days ago (will be updated when >5 days) ## Update config/insdc-bioproject/config.yaml => output/tsv/insdc-bioproject.tsv -< 2024-05-25T14:25:48 insdc-bioproject +< 2024-06-03T04:27:10 insdc-bioproject togoid-config config/insdc-bioproject update # Success: output/tsv/insdc-bioproject.tsv is updated -> 2024-05-25T14:26:10 insdc-bioproject +> 2024-06-03T04:27:33 insdc-bioproject Rule for TSV (output/tsv/insdc-bioproject.tsv) ------------------------------ Investigating output/tsv/insdc-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:26:10 +0900 +timestamp: 2024-06-03 04:27:33 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for insdc-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc-biosample.tsv is newer than config/insdc-biosample/config.yaml # File output/tsv/insdc-biosample.tsv has no timestamp file -# File output/tsv/insdc-biosample.tsv is created 7.458770181306516 days ago (will be updated when >5 days) +# File output/tsv/insdc-biosample.tsv is created 8.583388771370336 days ago (will be updated when >5 days) ## Update config/insdc-biosample/config.yaml => output/tsv/insdc-biosample.tsv -< 2024-05-25T14:26:10 insdc-biosample +< 2024-06-03T04:27:33 insdc-biosample togoid-config config/insdc-biosample update # Success: output/tsv/insdc-biosample.tsv is updated -> 2024-05-25T14:27:28 insdc-biosample +> 2024-06-03T04:28:53 insdc-biosample Rule for TSV (output/tsv/insdc-biosample.tsv) ------------------------------ Investigating output/tsv/insdc-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:27:28 +0900 +timestamp: 2024-06-03 04:28:53 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for insdc_master-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc_master-bioproject.tsv is newer than config/insdc_master-bioproject/config.yaml # File output/tsv/insdc_master-bioproject.tsv has no timestamp file -# File output/tsv/insdc_master-bioproject.tsv is created 7.459654102967522 days ago (will be updated when >5 days) +# File output/tsv/insdc_master-bioproject.tsv is created 8.58429924190933 days ago (will be updated when >5 days) ## Update config/insdc_master-bioproject/config.yaml => output/tsv/insdc_master-bioproject.tsv -< 2024-05-25T14:27:28 insdc_master-bioproject +< 2024-06-03T04:28:53 insdc_master-bioproject togoid-config config/insdc_master-bioproject update # Success: output/tsv/insdc_master-bioproject.tsv is updated -> 2024-05-25T14:27:30 insdc_master-bioproject +> 2024-06-03T04:28:55 insdc_master-bioproject Rule for TSV (output/tsv/insdc_master-bioproject.tsv) ------------------------------ Investigating output/tsv/insdc_master-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:27:30 +0900 +timestamp: 2024-06-03 04:28:55 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for insdc_master-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc_master-biosample.tsv is newer than config/insdc_master-biosample/config.yaml # File output/tsv/insdc_master-biosample.tsv has no timestamp file -# File output/tsv/insdc_master-biosample.tsv is created 7.4596550857648145 days ago (will be updated when >5 days) +# File output/tsv/insdc_master-biosample.tsv is created 8.584298973290474 days ago (will be updated when >5 days) ## Update config/insdc_master-biosample/config.yaml => output/tsv/insdc_master-biosample.tsv -< 2024-05-25T14:27:30 insdc_master-biosample +< 2024-06-03T04:28:55 insdc_master-biosample togoid-config config/insdc_master-biosample update # Success: output/tsv/insdc_master-biosample.tsv is updated -> 2024-05-25T14:27:31 insdc_master-biosample +> 2024-06-03T04:28:56 insdc_master-biosample Rule for TSV (output/tsv/insdc_master-biosample.tsv) ------------------------------ Investigating output/tsv/insdc_master-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:27:31 +0900 +timestamp: 2024-06-03 04:28:56 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ -### Update TSV for interpro-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-go.tsv is newer than config/interpro-go/config.yaml -# File output/tsv/interpro-go.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-go.tsv +# File output/tsv/interpro-go.tsv is older than input/interpro/download.lock +## Update config/interpro-go/config.yaml => output/tsv/interpro-go.tsv +< 2024-06-03T04:28:56 interpro-go +togoid-config config/interpro-go update +# Success: output/tsv/interpro-go.tsv is updated +> 2024-06-03T04:28:57 interpro-go Rule for TSV (output/tsv/interpro-go.tsv) ------------------------------ Investigating output/tsv/interpro-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-04-06 19:00:21 +0900 +timestamp: 2024-06-03 04:28:57 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-05-25 14:27:31 +0900) -latest-prerequisite time: 2024-05-25 14:27:31 +0900 +--prepare:interpro (2024-06-03 04:28:57 +0900) +latest-prerequisite time: 2024-06-03 04:28:57 +0900 ................................ -### Update TSV for interpro-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-pdb.tsv is newer than config/interpro-pdb/config.yaml -# File output/tsv/interpro-pdb.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-pdb.tsv +# File output/tsv/interpro-pdb.tsv is older than input/interpro/download.lock +## Update config/interpro-pdb/config.yaml => output/tsv/interpro-pdb.tsv +< 2024-06-03T04:28:57 interpro-pdb +togoid-config config/interpro-pdb update +# Success: output/tsv/interpro-pdb.tsv is updated +> 2024-06-03T04:29:01 interpro-pdb Rule for TSV (output/tsv/interpro-pdb.tsv) ------------------------------ Investigating output/tsv/interpro-pdb.tsv class: Rake::FileTask task needed: true -timestamp: 2024-04-06 19:00:24 +0900 +timestamp: 2024-06-03 04:29:01 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-05-25 14:27:31 +0900) -latest-prerequisite time: 2024-05-25 14:27:31 +0900 +--prepare:interpro (2024-06-03 04:29:01 +0900) +latest-prerequisite time: 2024-06-03 04:29:01 +0900 ................................ -### Update TSV for interpro-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-pfam.tsv is newer than config/interpro-pfam/config.yaml -# File output/tsv/interpro-pfam.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-pfam.tsv +# File output/tsv/interpro-pfam.tsv is older than input/interpro/download.lock +## Update config/interpro-pfam/config.yaml => output/tsv/interpro-pfam.tsv +< 2024-06-03T04:29:01 interpro-pfam +togoid-config config/interpro-pfam update +# Success: output/tsv/interpro-pfam.tsv is updated +> 2024-06-03T04:29:02 interpro-pfam Rule for TSV (output/tsv/interpro-pfam.tsv) ------------------------------ Investigating output/tsv/interpro-pfam.tsv class: Rake::FileTask task needed: true -timestamp: 2024-04-06 19:00:26 +0900 +timestamp: 2024-06-03 04:29:02 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-05-25 14:27:31 +0900) -latest-prerequisite time: 2024-05-25 14:27:31 +0900 +--prepare:interpro (2024-06-03 04:29:02 +0900) +latest-prerequisite time: 2024-06-03 04:29:02 +0900 ................................ -### Update TSV for interpro-prosite if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-prosite if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-prosite.tsv is newer than config/interpro-prosite/config.yaml -# File output/tsv/interpro-prosite.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-prosite.tsv +# File output/tsv/interpro-prosite.tsv is older than input/interpro/download.lock +## Update config/interpro-prosite/config.yaml => output/tsv/interpro-prosite.tsv +< 2024-06-03T04:29:02 interpro-prosite +togoid-config config/interpro-prosite update +# Success: output/tsv/interpro-prosite.tsv is updated +> 2024-06-03T04:29:04 interpro-prosite Rule for TSV (output/tsv/interpro-prosite.tsv) ------------------------------ Investigating output/tsv/interpro-prosite.tsv class: Rake::FileTask task needed: true -timestamp: 2024-04-06 19:00:27 +0900 +timestamp: 2024-06-03 04:29:04 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-05-25 14:27:31 +0900) -latest-prerequisite time: 2024-05-25 14:27:31 +0900 +--prepare:interpro (2024-06-03 04:29:04 +0900) +latest-prerequisite time: 2024-06-03 04:29:04 +0900 ................................ -### Update TSV for interpro-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-pubmed.tsv is newer than config/interpro-pubmed/config.yaml -# File output/tsv/interpro-pubmed.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-pubmed.tsv +# File output/tsv/interpro-pubmed.tsv is older than input/interpro/download.lock +## Update config/interpro-pubmed/config.yaml => output/tsv/interpro-pubmed.tsv +< 2024-06-03T04:29:04 interpro-pubmed +togoid-config config/interpro-pubmed update +# Success: output/tsv/interpro-pubmed.tsv is updated +> 2024-06-03T04:29:05 interpro-pubmed Rule for TSV (output/tsv/interpro-pubmed.tsv) ------------------------------ Investigating output/tsv/interpro-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-04-06 19:00:29 +0900 +timestamp: 2024-06-03 04:29:05 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-05-25 14:27:31 +0900) -latest-prerequisite time: 2024-05-25 14:27:31 +0900 +--prepare:interpro (2024-06-03 04:29:05 +0900) +latest-prerequisite time: 2024-06-03 04:29:05 +0900 ................................ -### Update TSV for interpro-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-reactome_pathway.tsv is newer than config/interpro-reactome_pathway/config.yaml -# File output/tsv/interpro-reactome_pathway.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-reactome_pathway.tsv +# File output/tsv/interpro-reactome_pathway.tsv is older than input/interpro/download.lock +## Update config/interpro-reactome_pathway/config.yaml => output/tsv/interpro-reactome_pathway.tsv +< 2024-06-03T04:29:05 interpro-reactome_pathway +togoid-config config/interpro-reactome_pathway update +# Success: output/tsv/interpro-reactome_pathway.tsv is updated +> 2024-06-03T04:29:07 interpro-reactome_pathway Rule for TSV (output/tsv/interpro-reactome_pathway.tsv) ------------------------------ Investigating output/tsv/interpro-reactome_pathway.tsv class: Rake::FileTask task needed: true -timestamp: 2024-04-06 19:00:30 +0900 +timestamp: 2024-06-03 04:29:07 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-05-25 14:27:31 +0900) -latest-prerequisite time: 2024-05-25 14:27:31 +0900 +--prepare:interpro (2024-06-03 04:29:07 +0900) +latest-prerequisite time: 2024-06-03 04:29:07 +0900 ................................ -### Update TSV for interpro-smart if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-smart if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-smart.tsv is newer than config/interpro-smart/config.yaml -# File output/tsv/interpro-smart.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-smart.tsv +# File output/tsv/interpro-smart.tsv is older than input/interpro/download.lock +## Update config/interpro-smart/config.yaml => output/tsv/interpro-smart.tsv +< 2024-06-03T04:29:07 interpro-smart +togoid-config config/interpro-smart update +# Success: output/tsv/interpro-smart.tsv is updated +> 2024-06-03T04:29:09 interpro-smart Rule for TSV (output/tsv/interpro-smart.tsv) ------------------------------ Investigating output/tsv/interpro-smart.tsv class: Rake::FileTask task needed: true -timestamp: 2024-04-06 19:00:32 +0900 +timestamp: 2024-06-03 04:29:09 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-05-25 14:27:32 +0900) -latest-prerequisite time: 2024-05-25 14:27:32 +0900 +--prepare:interpro (2024-06-03 04:29:09 +0900) +latest-prerequisite time: 2024-06-03 04:29:09 +0900 ................................ -### Update TSV for interpro-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for interpro-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/interpro-uniprot.tsv is newer than config/interpro-uniprot/config.yaml -# File output/tsv/interpro-uniprot.tsv is newer than input/interpro/download.lock -# => Preserving output/tsv/interpro-uniprot.tsv +# File output/tsv/interpro-uniprot.tsv is older than input/interpro/download.lock +## Update config/interpro-uniprot/config.yaml => output/tsv/interpro-uniprot.tsv +< 2024-06-03T04:29:09 interpro-uniprot +togoid-config config/interpro-uniprot update +# Success: output/tsv/interpro-uniprot.tsv is updated +> 2024-06-03T08:23:00 interpro-uniprot Rule for TSV (output/tsv/interpro-uniprot.tsv) ------------------------------ Investigating output/tsv/interpro-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-04-06 22:49:47 +0900 +timestamp: 2024-06-03 08:23:00 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-05-25 14:27:32 +0900) -latest-prerequisite time: 2024-05-25 14:27:32 +0900 +--prepare:interpro (2024-06-03 08:23:00 +0900) +latest-prerequisite time: 2024-06-03 08:23:00 +0900 ................................ ### Update TSV for jga_study-jga_dataset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-jga_dataset.tsv is newer than config/jga_study-jga_dataset/config.yaml # File output/tsv/jga_study-jga_dataset.tsv has no timestamp file -# File output/tsv/jga_study-jga_dataset.tsv is created 7.459667647487755 days ago (will be updated when >5 days) +# File output/tsv/jga_study-jga_dataset.tsv is created 8.746855876842327 days ago (will be updated when >5 days) ## Update config/jga_study-jga_dataset/config.yaml => output/tsv/jga_study-jga_dataset.tsv -< 2024-05-25T14:27:32 jga_study-jga_dataset +< 2024-06-03T08:23:00 jga_study-jga_dataset togoid-config config/jga_study-jga_dataset update # Success: output/tsv/jga_study-jga_dataset.tsv is updated -> 2024-05-25T14:27:32 jga_study-jga_dataset +> 2024-06-03T08:23:03 jga_study-jga_dataset Rule for TSV (output/tsv/jga_study-jga_dataset.tsv) ------------------------------ Investigating output/tsv/jga_study-jga_dataset.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:27:32 +0900 +timestamp: 2024-06-03 08:23:03 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for jga_study-nbdc_human_db if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-nbdc_human_db.tsv is newer than config/jga_study-nbdc_human_db/config.yaml # File output/tsv/jga_study-nbdc_human_db.tsv has no timestamp file -# File output/tsv/jga_study-nbdc_human_db.tsv is created 7.4596672044434955 days ago (will be updated when >5 days) +# File output/tsv/jga_study-nbdc_human_db.tsv is created 8.74688751252471 days ago (will be updated when >5 days) ## Update config/jga_study-nbdc_human_db/config.yaml => output/tsv/jga_study-nbdc_human_db.tsv -< 2024-05-25T14:27:32 jga_study-nbdc_human_db +< 2024-06-03T08:23:03 jga_study-nbdc_human_db togoid-config config/jga_study-nbdc_human_db update # Success: output/tsv/jga_study-nbdc_human_db.tsv is updated -> 2024-05-25T14:27:32 jga_study-nbdc_human_db +> 2024-06-03T08:23:04 jga_study-nbdc_human_db Rule for TSV (output/tsv/jga_study-nbdc_human_db.tsv) ------------------------------ Investigating output/tsv/jga_study-nbdc_human_db.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:27:32 +0900 +timestamp: 2024-06-03 08:23:04 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for jga_study-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-pubmed.tsv is newer than config/jga_study-pubmed/config.yaml # File output/tsv/jga_study-pubmed.tsv has no timestamp file -# File output/tsv/jga_study-pubmed.tsv is created 7.459666986554966 days ago (will be updated when >5 days) +# File output/tsv/jga_study-pubmed.tsv is created 8.74688717290045 days ago (will be updated when >5 days) ## Update config/jga_study-pubmed/config.yaml => output/tsv/jga_study-pubmed.tsv -< 2024-05-25T14:27:32 jga_study-pubmed +< 2024-06-03T08:23:04 jga_study-pubmed togoid-config config/jga_study-pubmed update # Success: output/tsv/jga_study-pubmed.tsv is updated -> 2024-05-25T14:27:33 jga_study-pubmed +> 2024-06-03T08:23:04 jga_study-pubmed Rule for TSV (output/tsv/jga_study-pubmed.tsv) ------------------------------ Investigating output/tsv/jga_study-pubmed.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:27:33 +0900 +timestamp: 2024-06-03 08:23:04 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for lipidmaps-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-chebi.tsv is newer than config/lipidmaps-chebi/config.yaml # File output/tsv/lipidmaps-chebi.tsv has no timestamp file -# File output/tsv/lipidmaps-chebi.tsv is created 7.459619443846215 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-chebi.tsv is created 8.74685009342765 days ago (will be updated when >5 days) ## Update config/lipidmaps-chebi/config.yaml => output/tsv/lipidmaps-chebi.tsv -< 2024-05-25T14:27:33 lipidmaps-chebi +< 2024-06-03T08:23:04 lipidmaps-chebi togoid-config config/lipidmaps-chebi update # Success: output/tsv/lipidmaps-chebi.tsv is updated -> 2024-05-25T14:27:37 lipidmaps-chebi +> 2024-06-03T08:23:09 lipidmaps-chebi Rule for TSV (output/tsv/lipidmaps-chebi.tsv) ------------------------------ Investigating output/tsv/lipidmaps-chebi.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:27:36 +0900 +timestamp: 2024-06-03 08:23:09 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for lipidmaps-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-inchi_key.tsv is newer than config/lipidmaps-inchi_key/config.yaml # File output/tsv/lipidmaps-inchi_key.tsv has no timestamp file -# File output/tsv/lipidmaps-inchi_key.tsv is created 7.459618226088461 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-inchi_key.tsv is created 8.746859275801157 days ago (will be updated when >5 days) ## Update config/lipidmaps-inchi_key/config.yaml => output/tsv/lipidmaps-inchi_key.tsv -< 2024-05-25T14:27:37 lipidmaps-inchi_key +< 2024-06-03T08:23:09 lipidmaps-inchi_key togoid-config config/lipidmaps-inchi_key update # Success: output/tsv/lipidmaps-inchi_key.tsv is updated -> 2024-05-25T14:27:40 lipidmaps-inchi_key +> 2024-06-03T08:23:13 lipidmaps-inchi_key Rule for TSV (output/tsv/lipidmaps-inchi_key.tsv) ------------------------------ Investigating output/tsv/lipidmaps-inchi_key.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:27:40 +0900 +timestamp: 2024-06-03 08:23:13 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for lipidmaps-swisslipids if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-swisslipids.tsv is newer than config/lipidmaps-swisslipids/config.yaml # File output/tsv/lipidmaps-swisslipids.tsv has no timestamp file -# File output/tsv/lipidmaps-swisslipids.tsv is created 7.459626282647107 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-swisslipids.tsv is created 8.746868870522002 days ago (will be updated when >5 days) ## Update config/lipidmaps-swisslipids/config.yaml => output/tsv/lipidmaps-swisslipids.tsv -< 2024-05-25T14:27:40 lipidmaps-swisslipids +< 2024-06-03T08:23:13 lipidmaps-swisslipids togoid-config config/lipidmaps-swisslipids update # Success: output/tsv/lipidmaps-swisslipids.tsv is updated -> 2024-05-25T14:27:43 lipidmaps-swisslipids +> 2024-06-03T08:23:16 lipidmaps-swisslipids Rule for TSV (output/tsv/lipidmaps-swisslipids.tsv) ------------------------------ Investigating output/tsv/lipidmaps-swisslipids.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 14:27:43 +0900 +timestamp: 2024-06-03 08:23:16 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for mbgd_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mbgd_gene-uniprot.tsv is newer than config/mbgd_gene-uniprot/config.yaml # File output/tsv/mbgd_gene-uniprot.tsv has no timestamp file -# File output/tsv/mbgd_gene-uniprot.tsv is created 7.426526038566192 days ago (will be updated when >5 days) +# File output/tsv/mbgd_gene-uniprot.tsv is created 8.718577945821874 days ago (will be updated when >5 days) ## Update config/mbgd_gene-uniprot/config.yaml => output/tsv/mbgd_gene-uniprot.tsv -< 2024-05-25T14:27:43 mbgd_gene-uniprot +< 2024-06-03T08:23:16 mbgd_gene-uniprot togoid-config config/mbgd_gene-uniprot update Warning: Failed to retrieve taxon:cdg in loop_count:1 Warning: Failed to retrieve taxon:coe in loop_count:1 @@ -2577,892 +2598,904 @@ Warning: Failed to retrieve taxon:abd in loop_count:1 Warning: Failed to retrieve taxon:mtg in loop_count:1 Warning: Failed to retrieve taxon:mti in loop_count:1 # Success: output/tsv/mbgd_gene-uniprot.tsv is updated -> 2024-05-25T15:08:31 mbgd_gene-uniprot +> 2024-06-03T09:04:36 mbgd_gene-uniprot Rule for TSV (output/tsv/mbgd_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/mbgd_gene-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:08:31 +0900 +timestamp: 2024-06-03 09:04:36 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for mbgd_organism-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mbgd_organism-taxonomy.tsv is newer than config/mbgd_organism-taxonomy/config.yaml # File output/tsv/mbgd_organism-taxonomy.tsv has no timestamp file -# File output/tsv/mbgd_organism-taxonomy.tsv is created 7.454844009510602 days ago (will be updated when >5 days) +# File output/tsv/mbgd_organism-taxonomy.tsv is created 8.747281372266064 days ago (will be updated when >5 days) ## Update config/mbgd_organism-taxonomy/config.yaml => output/tsv/mbgd_organism-taxonomy.tsv -< 2024-05-25T15:08:31 mbgd_organism-taxonomy +< 2024-06-03T09:04:36 mbgd_organism-taxonomy togoid-config config/mbgd_organism-taxonomy update # Success: output/tsv/mbgd_organism-taxonomy.tsv is updated -> 2024-05-25T15:08:31 mbgd_organism-taxonomy +> 2024-06-03T09:04:38 mbgd_organism-taxonomy Rule for TSV (output/tsv/mbgd_organism-taxonomy.tsv) ------------------------------ Investigating output/tsv/mbgd_organism-taxonomy.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:08:31 +0900 +timestamp: 2024-06-03 09:04:38 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for medgen-hp_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-hp_phenotype.tsv is newer than config/medgen-hp_phenotype/config.yaml # File output/tsv/medgen-hp_phenotype.tsv has no timestamp file -# File output/tsv/medgen-hp_phenotype.tsv is created 7.454843963091133 days ago (will be updated when >5 days) +# File output/tsv/medgen-hp_phenotype.tsv is created 8.747294554456563 days ago (will be updated when >5 days) ## Update config/medgen-hp_phenotype/config.yaml => output/tsv/medgen-hp_phenotype.tsv -< 2024-05-25T15:08:31 medgen-hp_phenotype +< 2024-06-03T09:04:38 medgen-hp_phenotype togoid-config config/medgen-hp_phenotype update # Success: output/tsv/medgen-hp_phenotype.tsv is updated -> 2024-05-25T15:08:32 medgen-hp_phenotype +> 2024-06-03T09:04:39 medgen-hp_phenotype Rule for TSV (output/tsv/medgen-hp_phenotype.tsv) ------------------------------ Investigating output/tsv/medgen-hp_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:08:32 +0900 +timestamp: 2024-06-03 09:04:39 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for medgen-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-mesh.tsv is newer than config/medgen-mesh/config.yaml # File output/tsv/medgen-mesh.tsv has no timestamp file -# File output/tsv/medgen-mesh.tsv is created 7.454845035776146 days ago (will be updated when >5 days) +# File output/tsv/medgen-mesh.tsv is created 8.747301399017223 days ago (will be updated when >5 days) ## Update config/medgen-mesh/config.yaml => output/tsv/medgen-mesh.tsv -< 2024-05-25T15:08:32 medgen-mesh +< 2024-06-03T09:04:39 medgen-mesh togoid-config config/medgen-mesh update # Success: output/tsv/medgen-mesh.tsv is updated -> 2024-05-25T15:08:32 medgen-mesh +> 2024-06-03T09:04:40 medgen-mesh Rule for TSV (output/tsv/medgen-mesh.tsv) ------------------------------ Investigating output/tsv/medgen-mesh.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:08:32 +0900 +timestamp: 2024-06-03 09:04:40 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for medgen-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-mondo.tsv is newer than config/medgen-mondo/config.yaml # File output/tsv/medgen-mondo.tsv has no timestamp file -# File output/tsv/medgen-mondo.tsv is created 7.4548462906705675 days ago (will be updated when >5 days) +# File output/tsv/medgen-mondo.tsv is created 8.747301774328356 days ago (will be updated when >5 days) ## Update config/medgen-mondo/config.yaml => output/tsv/medgen-mondo.tsv -< 2024-05-25T15:08:32 medgen-mondo +< 2024-06-03T09:04:40 medgen-mondo togoid-config config/medgen-mondo update # Success: output/tsv/medgen-mondo.tsv is updated -> 2024-05-25T15:08:33 medgen-mondo +> 2024-06-03T09:04:40 medgen-mondo Rule for TSV (output/tsv/medgen-mondo.tsv) ------------------------------ Investigating output/tsv/medgen-mondo.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:08:33 +0900 +timestamp: 2024-06-03 09:04:40 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for medgen-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-ncbigene.tsv is newer than config/medgen-ncbigene/config.yaml # File output/tsv/medgen-ncbigene.tsv has no timestamp file -# File output/tsv/medgen-ncbigene.tsv is created 7.454847169580302 days ago (will be updated when >5 days) +# File output/tsv/medgen-ncbigene.tsv is created 8.74730271581412 days ago (will be updated when >5 days) ## Update config/medgen-ncbigene/config.yaml => output/tsv/medgen-ncbigene.tsv -< 2024-05-25T15:08:33 medgen-ncbigene +< 2024-06-03T09:04:40 medgen-ncbigene togoid-config config/medgen-ncbigene update # Success: output/tsv/medgen-ncbigene.tsv is updated -> 2024-05-25T15:08:33 medgen-ncbigene +> 2024-06-03T09:04:41 medgen-ncbigene Rule for TSV (output/tsv/medgen-ncbigene.tsv) ------------------------------ Investigating output/tsv/medgen-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:08:33 +0900 +timestamp: 2024-06-03 09:04:41 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for medgen-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-omim_phenotype.tsv is newer than config/medgen-omim_phenotype/config.yaml # File output/tsv/medgen-omim_phenotype.tsv has no timestamp file -# File output/tsv/medgen-omim_phenotype.tsv is created 7.454847027652593 days ago (will be updated when >5 days) +# File output/tsv/medgen-omim_phenotype.tsv is created 8.747302310007639 days ago (will be updated when >5 days) ## Update config/medgen-omim_phenotype/config.yaml => output/tsv/medgen-omim_phenotype.tsv -< 2024-05-25T15:08:33 medgen-omim_phenotype +< 2024-06-03T09:04:41 medgen-omim_phenotype togoid-config config/medgen-omim_phenotype update # Success: output/tsv/medgen-omim_phenotype.tsv is updated -> 2024-05-25T15:08:34 medgen-omim_phenotype +> 2024-06-03T09:04:41 medgen-omim_phenotype Rule for TSV (output/tsv/medgen-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/medgen-omim_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:08:34 +0900 +timestamp: 2024-06-03 09:04:41 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for medgen-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-orphanet_phenotype.tsv is newer than config/medgen-orphanet_phenotype/config.yaml # File output/tsv/medgen-orphanet_phenotype.tsv has no timestamp file -# File output/tsv/medgen-orphanet_phenotype.tsv is created 7.454848032937177 days ago (will be updated when >5 days) +# File output/tsv/medgen-orphanet_phenotype.tsv is created 8.747303012747604 days ago (will be updated when >5 days) ## Update config/medgen-orphanet_phenotype/config.yaml => output/tsv/medgen-orphanet_phenotype.tsv -< 2024-05-25T15:08:34 medgen-orphanet_phenotype +< 2024-06-03T09:04:41 medgen-orphanet_phenotype togoid-config config/medgen-orphanet_phenotype update # Success: output/tsv/medgen-orphanet_phenotype.tsv is updated -> 2024-05-25T15:08:34 medgen-orphanet_phenotype +> 2024-06-03T09:04:42 medgen-orphanet_phenotype Rule for TSV (output/tsv/medgen-orphanet_phenotype.tsv) ------------------------------ Investigating output/tsv/medgen-orphanet_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:08:34 +0900 +timestamp: 2024-06-03 09:04:42 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for mgi_gene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-ensembl_gene.tsv is newer than config/mgi_gene-ensembl_gene/config.yaml # File output/tsv/mgi_gene-ensembl_gene.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-ensembl_gene/config.yaml => output/tsv/mgi_gene-ensembl_gene.tsv -< 2024-05-25T15:08:34 mgi_gene-ensembl_gene +< 2024-06-03T09:04:42 mgi_gene-ensembl_gene togoid-config config/mgi_gene-ensembl_gene update # Success: output/tsv/mgi_gene-ensembl_gene.tsv is updated -> 2024-05-25T15:08:35 mgi_gene-ensembl_gene +> 2024-06-03T09:04:42 mgi_gene-ensembl_gene Rule for TSV (output/tsv/mgi_gene-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/mgi_gene-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:08:35 +0900 +timestamp: 2024-06-03 09:04:42 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-05-25 15:08:35 +0900) -latest-prerequisite time: 2024-05-25 15:08:35 +0900 +--prepare:mgi_gene (2024-06-03 09:04:42 +0900) +latest-prerequisite time: 2024-06-03 09:04:42 +0900 ................................ ### Update TSV for mgi_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-hgnc.tsv is newer than config/mgi_gene-hgnc/config.yaml # File output/tsv/mgi_gene-hgnc.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-hgnc/config.yaml => output/tsv/mgi_gene-hgnc.tsv -< 2024-05-25T15:08:35 mgi_gene-hgnc +< 2024-06-03T09:04:42 mgi_gene-hgnc togoid-config config/mgi_gene-hgnc update # Success: output/tsv/mgi_gene-hgnc.tsv is updated -> 2024-05-25T15:08:35 mgi_gene-hgnc +> 2024-06-03T09:04:43 mgi_gene-hgnc Rule for TSV (output/tsv/mgi_gene-hgnc.tsv) ------------------------------ Investigating output/tsv/mgi_gene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:08:35 +0900 +timestamp: 2024-06-03 09:04:43 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-05-25 15:08:35 +0900) -latest-prerequisite time: 2024-05-25 15:08:35 +0900 +--prepare:mgi_gene (2024-06-03 09:04:43 +0900) +latest-prerequisite time: 2024-06-03 09:04:43 +0900 ................................ ### Update TSV for mgi_gene-mgi_allele if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-mgi_allele.tsv is newer than config/mgi_gene-mgi_allele/config.yaml # File output/tsv/mgi_gene-mgi_allele.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-mgi_allele/config.yaml => output/tsv/mgi_gene-mgi_allele.tsv -< 2024-05-25T15:08:35 mgi_gene-mgi_allele +< 2024-06-03T09:04:43 mgi_gene-mgi_allele togoid-config config/mgi_gene-mgi_allele update # Success: output/tsv/mgi_gene-mgi_allele.tsv is updated -> 2024-05-25T15:08:37 mgi_gene-mgi_allele +> 2024-06-03T09:04:44 mgi_gene-mgi_allele Rule for TSV (output/tsv/mgi_gene-mgi_allele.tsv) ------------------------------ Investigating output/tsv/mgi_gene-mgi_allele.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:08:37 +0900 +timestamp: 2024-06-03 09:04:44 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-05-25 15:08:37 +0900) -latest-prerequisite time: 2024-05-25 15:08:37 +0900 +--prepare:mgi_gene (2024-06-03 09:04:44 +0900) +latest-prerequisite time: 2024-06-03 09:04:44 +0900 ................................ ### Update TSV for mgi_gene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-ncbigene.tsv is newer than config/mgi_gene-ncbigene/config.yaml # File output/tsv/mgi_gene-ncbigene.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-ncbigene/config.yaml => output/tsv/mgi_gene-ncbigene.tsv -< 2024-05-25T15:08:37 mgi_gene-ncbigene +< 2024-06-03T09:04:44 mgi_gene-ncbigene togoid-config config/mgi_gene-ncbigene update # Success: output/tsv/mgi_gene-ncbigene.tsv is updated -> 2024-05-25T15:08:37 mgi_gene-ncbigene +> 2024-06-03T09:04:45 mgi_gene-ncbigene Rule for TSV (output/tsv/mgi_gene-ncbigene.tsv) ------------------------------ Investigating output/tsv/mgi_gene-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:08:37 +0900 +timestamp: 2024-06-03 09:04:45 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-05-25 15:08:37 +0900) -latest-prerequisite time: 2024-05-25 15:08:37 +0900 +--prepare:mgi_gene (2024-06-03 09:04:45 +0900) +latest-prerequisite time: 2024-06-03 09:04:45 +0900 ................................ ### Update TSV for mgi_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-uniprot.tsv is newer than config/mgi_gene-uniprot/config.yaml # File output/tsv/mgi_gene-uniprot.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-uniprot/config.yaml => output/tsv/mgi_gene-uniprot.tsv -< 2024-05-25T15:08:37 mgi_gene-uniprot +< 2024-06-03T09:04:45 mgi_gene-uniprot togoid-config config/mgi_gene-uniprot update # Success: output/tsv/mgi_gene-uniprot.tsv is updated -> 2024-05-25T15:08:38 mgi_gene-uniprot +> 2024-06-03T09:04:45 mgi_gene-uniprot Rule for TSV (output/tsv/mgi_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/mgi_gene-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:08:38 +0900 +timestamp: 2024-06-03 09:04:45 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-05-25 15:08:38 +0900) -latest-prerequisite time: 2024-05-25 15:08:38 +0900 +--prepare:mgi_gene (2024-06-03 09:04:45 +0900) +latest-prerequisite time: 2024-06-03 09:04:45 +0900 ................................ ### Update TSV for mgi_genotype-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-doid.tsv is newer than config/mgi_genotype-doid/config.yaml # File output/tsv/mgi_genotype-doid.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-doid/config.yaml => output/tsv/mgi_genotype-doid.tsv -< 2024-05-25T15:08:38 mgi_genotype-doid +< 2024-06-03T09:04:45 mgi_genotype-doid togoid-config config/mgi_genotype-doid update # Success: output/tsv/mgi_genotype-doid.tsv is updated -> 2024-05-25T15:08:40 mgi_genotype-doid +> 2024-06-03T09:04:47 mgi_genotype-doid Rule for TSV (output/tsv/mgi_genotype-doid.tsv) ------------------------------ Investigating output/tsv/mgi_genotype-doid.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:08:40 +0900 +timestamp: 2024-06-03 09:04:47 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_genotype (2024-05-25 15:08:40 +0900) -latest-prerequisite time: 2024-05-25 15:08:40 +0900 +--prepare:mgi_genotype (2024-06-03 09:04:47 +0900) +latest-prerequisite time: 2024-06-03 09:04:47 +0900 ................................ ### Update TSV for mgi_genotype-mgi_allele if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-mgi_allele.tsv is newer than config/mgi_genotype-mgi_allele/config.yaml # File output/tsv/mgi_genotype-mgi_allele.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-mgi_allele/config.yaml => output/tsv/mgi_genotype-mgi_allele.tsv -< 2024-05-25T15:08:40 mgi_genotype-mgi_allele +< 2024-06-03T09:04:47 mgi_genotype-mgi_allele togoid-config config/mgi_genotype-mgi_allele update # Success: output/tsv/mgi_genotype-mgi_allele.tsv is updated -> 2024-05-25T15:08:41 mgi_genotype-mgi_allele +> 2024-06-03T09:04:48 mgi_genotype-mgi_allele Rule for TSV (output/tsv/mgi_genotype-mgi_allele.tsv) ------------------------------ Investigating output/tsv/mgi_genotype-mgi_allele.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:08:41 +0900 +timestamp: 2024-06-03 09:04:48 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_genotype (2024-05-25 15:08:41 +0900) -latest-prerequisite time: 2024-05-25 15:08:41 +0900 +--prepare:mgi_genotype (2024-06-03 09:04:48 +0900) +latest-prerequisite time: 2024-06-03 09:04:48 +0900 ................................ ### Update TSV for mgi_genotype-mp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-mp.tsv is newer than config/mgi_genotype-mp/config.yaml # File output/tsv/mgi_genotype-mp.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-mp/config.yaml => output/tsv/mgi_genotype-mp.tsv -< 2024-05-25T15:08:41 mgi_genotype-mp +< 2024-06-03T09:04:48 mgi_genotype-mp togoid-config config/mgi_genotype-mp update # Success: output/tsv/mgi_genotype-mp.tsv is updated -> 2024-05-25T15:08:44 mgi_genotype-mp +> 2024-06-03T09:04:51 mgi_genotype-mp Rule for TSV (output/tsv/mgi_genotype-mp.tsv) ------------------------------ Investigating output/tsv/mgi_genotype-mp.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:08:44 +0900 +timestamp: 2024-06-03 09:04:51 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_genotype (2024-05-25 15:08:44 +0900) -latest-prerequisite time: 2024-05-25 15:08:44 +0900 +--prepare:mgi_genotype (2024-06-03 09:04:51 +0900) +latest-prerequisite time: 2024-06-03 09:04:51 +0900 ................................ ### Update TSV for mondo-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-doid.tsv is newer than config/mondo-doid/config.yaml # File output/tsv/mondo-doid.tsv has no timestamp file -# File output/tsv/mondo-doid.tsv is created 7.454836531702674 days ago (will be updated when >5 days) +# File output/tsv/mondo-doid.tsv is created 8.747294479695185 days ago (will be updated when >5 days) ## Update config/mondo-doid/config.yaml => output/tsv/mondo-doid.tsv -< 2024-05-25T15:08:44 mondo-doid +< 2024-06-03T09:04:51 mondo-doid togoid-config config/mondo-doid update -# Success: output/tsv/mondo-doid.tsv is updated -> 2024-05-25T15:08:45 mondo-doid +# Error: output/tsv/mondo-doid.tsv new file size per old 0 / 155460 = 0.0 < 0.5 +# Error: Failed to create output/tsv/mondo-doid.tsv or created file was empty +# Failure: output/tsv/mondo-doid.tsv is not updated +> 2024-06-03T09:04:51 mondo-doid Rule for TSV (output/tsv/mondo-doid.tsv) ------------------------------ Investigating output/tsv/mondo-doid.tsv class: Rake::FileTask -task needed: false +task needed: true timestamp: 2024-05-25 15:08:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for mondo-hp_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-hp_phenotype.tsv is newer than config/mondo-hp_phenotype/config.yaml # File output/tsv/mondo-hp_phenotype.tsv has no timestamp file -# File output/tsv/mondo-hp_phenotype.tsv is created 7.454837628117929 days ago (will be updated when >5 days) +# File output/tsv/mondo-hp_phenotype.tsv is created 8.74729443459258 days ago (will be updated when >5 days) ## Update config/mondo-hp_phenotype/config.yaml => output/tsv/mondo-hp_phenotype.tsv -< 2024-05-25T15:08:45 mondo-hp_phenotype +< 2024-06-03T09:04:51 mondo-hp_phenotype togoid-config config/mondo-hp_phenotype update -# Success: output/tsv/mondo-hp_phenotype.tsv is updated -> 2024-05-25T15:08:45 mondo-hp_phenotype +# Error: output/tsv/mondo-hp_phenotype.tsv new file size per old 0 / 9184 = 0.0 < 0.5 +# Error: Failed to create output/tsv/mondo-hp_phenotype.tsv or created file was empty +# Failure: output/tsv/mondo-hp_phenotype.tsv is not updated +> 2024-06-03T09:04:52 mondo-hp_phenotype Rule for TSV (output/tsv/mondo-hp_phenotype.tsv) ------------------------------ Investigating output/tsv/mondo-hp_phenotype.tsv class: Rake::FileTask -task needed: false +task needed: true timestamp: 2024-05-25 15:08:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for mondo-meddra if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-meddra.tsv is newer than config/mondo-meddra/config.yaml # File output/tsv/mondo-meddra.tsv has no timestamp file -# File output/tsv/mondo-meddra.tsv is created 7.454838717802245 days ago (will be updated when >5 days) +# File output/tsv/mondo-meddra.tsv is created 8.747294559238275 days ago (will be updated when >5 days) ## Update config/mondo-meddra/config.yaml => output/tsv/mondo-meddra.tsv -< 2024-05-25T15:08:45 mondo-meddra +< 2024-06-03T09:04:52 mondo-meddra togoid-config config/mondo-meddra update -# Success: output/tsv/mondo-meddra.tsv is updated -> 2024-05-25T15:08:45 mondo-meddra +# Error: output/tsv/mondo-meddra.tsv new file size per old 0 / 25262 = 0.0 < 0.5 +# Error: Failed to create output/tsv/mondo-meddra.tsv or created file was empty +# Failure: output/tsv/mondo-meddra.tsv is not updated +> 2024-06-03T09:04:52 mondo-meddra Rule for TSV (output/tsv/mondo-meddra.tsv) ------------------------------ Investigating output/tsv/mondo-meddra.tsv class: Rake::FileTask -task needed: false +task needed: true timestamp: 2024-05-25 15:08:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for mondo-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-mesh.tsv is newer than config/mondo-mesh/config.yaml # File output/tsv/mondo-mesh.tsv has no timestamp file -# File output/tsv/mondo-mesh.tsv is created 7.454838311591585 days ago (will be updated when >5 days) +# File output/tsv/mondo-mesh.tsv is created 8.747293744552431 days ago (will be updated when >5 days) ## Update config/mondo-mesh/config.yaml => output/tsv/mondo-mesh.tsv -< 2024-05-25T15:08:45 mondo-mesh +< 2024-06-03T09:04:52 mondo-mesh togoid-config config/mondo-mesh update -# Success: output/tsv/mondo-mesh.tsv is updated -> 2024-05-25T15:08:46 mondo-mesh +# Error: output/tsv/mondo-mesh.tsv new file size per old 0 / 133836 = 0.0 < 0.5 +# Error: Failed to create output/tsv/mondo-mesh.tsv or created file was empty +# Failure: output/tsv/mondo-mesh.tsv is not updated +> 2024-06-03T09:04:53 mondo-mesh Rule for TSV (output/tsv/mondo-mesh.tsv) ------------------------------ Investigating output/tsv/mondo-mesh.tsv class: Rake::FileTask -task needed: false +task needed: true timestamp: 2024-05-25 15:08:46 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for mondo-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-omim_phenotype.tsv is newer than config/mondo-omim_phenotype/config.yaml # File output/tsv/mondo-omim_phenotype.tsv has no timestamp file -# File output/tsv/mondo-omim_phenotype.tsv is created 7.454839317533888 days ago (will be updated when >5 days) +# File output/tsv/mondo-omim_phenotype.tsv is created 8.74729457205515 days ago (will be updated when >5 days) ## Update config/mondo-omim_phenotype/config.yaml => output/tsv/mondo-omim_phenotype.tsv -< 2024-05-25T15:08:46 mondo-omim_phenotype +< 2024-06-03T09:04:53 mondo-omim_phenotype togoid-config config/mondo-omim_phenotype update -# Success: output/tsv/mondo-omim_phenotype.tsv is updated -> 2024-05-25T15:08:46 mondo-omim_phenotype +# Error: output/tsv/mondo-omim_phenotype.tsv new file size per old 0 / 145395 = 0.0 < 0.5 +# Error: Failed to create output/tsv/mondo-omim_phenotype.tsv or created file was empty +# Failure: output/tsv/mondo-omim_phenotype.tsv is not updated +> 2024-06-03T09:04:53 mondo-omim_phenotype Rule for TSV (output/tsv/mondo-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/mondo-omim_phenotype.tsv class: Rake::FileTask -task needed: false +task needed: true timestamp: 2024-05-25 15:08:46 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for mondo-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-orphanet_phenotype.tsv is newer than config/mondo-orphanet_phenotype/config.yaml # File output/tsv/mondo-orphanet_phenotype.tsv has no timestamp file -# File output/tsv/mondo-orphanet_phenotype.tsv is created 7.4548396095489 days ago (will be updated when >5 days) +# File output/tsv/mondo-orphanet_phenotype.tsv is created 8.747294505549098 days ago (will be updated when >5 days) ## Update config/mondo-orphanet_phenotype/config.yaml => output/tsv/mondo-orphanet_phenotype.tsv -< 2024-05-25T15:08:46 mondo-orphanet_phenotype +< 2024-06-03T09:04:53 mondo-orphanet_phenotype togoid-config config/mondo-orphanet_phenotype update -# Success: output/tsv/mondo-orphanet_phenotype.tsv is updated -> 2024-05-25T15:08:47 mondo-orphanet_phenotype +# Error: output/tsv/mondo-orphanet_phenotype.tsv new file size per old 0 / 146923 = 0.0 < 0.5 +# Error: Failed to create output/tsv/mondo-orphanet_phenotype.tsv or created file was empty +# Failure: output/tsv/mondo-orphanet_phenotype.tsv is not updated +> 2024-06-03T09:04:54 mondo-orphanet_phenotype Rule for TSV (output/tsv/mondo-orphanet_phenotype.tsv) ------------------------------ Investigating output/tsv/mondo-orphanet_phenotype.tsv class: Rake::FileTask -task needed: false +task needed: true timestamp: 2024-05-25 15:08:47 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for nando-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/nando-mondo.tsv is newer than config/nando-mondo/config.yaml # File output/tsv/nando-mondo.tsv has no timestamp file -# File output/tsv/nando-mondo.tsv is created 7.454840304654607 days ago (will be updated when >5 days) +# File output/tsv/nando-mondo.tsv is created 8.747307246914144 days ago (will be updated when >5 days) ## Update config/nando-mondo/config.yaml => output/tsv/nando-mondo.tsv -< 2024-05-25T15:08:47 nando-mondo +< 2024-06-03T09:04:54 nando-mondo togoid-config config/nando-mondo update # Success: output/tsv/nando-mondo.tsv is updated -> 2024-05-25T15:08:47 nando-mondo +> 2024-06-03T09:04:55 nando-mondo Rule for TSV (output/tsv/nando-mondo.tsv) ------------------------------ Investigating output/tsv/nando-mondo.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:08:47 +0900 +timestamp: 2024-06-03 09:04:55 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for ncbigene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_gene.tsv is newer than config/ncbigene-ensembl_gene/config.yaml # File output/tsv/ncbigene-ensembl_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_gene/config.yaml => output/tsv/ncbigene-ensembl_gene.tsv -< 2024-05-25T15:08:47 ncbigene-ensembl_gene +< 2024-06-03T09:04:55 ncbigene-ensembl_gene togoid-config config/ncbigene-ensembl_gene update # Success: output/tsv/ncbigene-ensembl_gene.tsv is updated -> 2024-05-25T15:09:19 ncbigene-ensembl_gene +> 2024-06-03T09:05:30 ncbigene-ensembl_gene Rule for TSV (output/tsv/ncbigene-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:09:19 +0900 +timestamp: 2024-06-03 09:05:30 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:09:19 +0900) -latest-prerequisite time: 2024-05-25 15:09:19 +0900 +--prepare:ncbigene (2024-06-03 09:05:30 +0900) +latest-prerequisite time: 2024-06-03 09:05:30 +0900 ................................ ### Update TSV for ncbigene-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_protein.tsv is newer than config/ncbigene-ensembl_protein/config.yaml # File output/tsv/ncbigene-ensembl_protein.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_protein/config.yaml => output/tsv/ncbigene-ensembl_protein.tsv -< 2024-05-25T15:09:19 ncbigene-ensembl_protein +< 2024-06-03T09:05:30 ncbigene-ensembl_protein togoid-config config/ncbigene-ensembl_protein update # Success: output/tsv/ncbigene-ensembl_protein.tsv is updated -> 2024-05-25T15:10:22 ncbigene-ensembl_protein +> 2024-06-03T09:06:44 ncbigene-ensembl_protein Rule for TSV (output/tsv/ncbigene-ensembl_protein.tsv) ------------------------------ Investigating output/tsv/ncbigene-ensembl_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:10:22 +0900 +timestamp: 2024-06-03 09:06:44 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:10:22 +0900) -latest-prerequisite time: 2024-05-25 15:10:22 +0900 +--prepare:ncbigene (2024-06-03 09:06:44 +0900) +latest-prerequisite time: 2024-06-03 09:06:44 +0900 ................................ ### Update TSV for ncbigene-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_transcript.tsv is newer than config/ncbigene-ensembl_transcript/config.yaml # File output/tsv/ncbigene-ensembl_transcript.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_transcript/config.yaml => output/tsv/ncbigene-ensembl_transcript.tsv -< 2024-05-25T15:10:22 ncbigene-ensembl_transcript +< 2024-06-03T09:06:44 ncbigene-ensembl_transcript togoid-config config/ncbigene-ensembl_transcript update # Success: output/tsv/ncbigene-ensembl_transcript.tsv is updated -> 2024-05-25T15:11:26 ncbigene-ensembl_transcript +> 2024-06-03T09:07:47 ncbigene-ensembl_transcript Rule for TSV (output/tsv/ncbigene-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/ncbigene-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:11:26 +0900 +timestamp: 2024-06-03 09:07:47 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:11:26 +0900) -latest-prerequisite time: 2024-05-25 15:11:26 +0900 +--prepare:ncbigene (2024-06-03 09:07:47 +0900) +latest-prerequisite time: 2024-06-03 09:07:47 +0900 ................................ ### Update TSV for ncbigene-flybase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-flybase_gene.tsv is newer than config/ncbigene-flybase_gene/config.yaml # File output/tsv/ncbigene-flybase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-flybase_gene/config.yaml => output/tsv/ncbigene-flybase_gene.tsv -< 2024-05-25T15:11:27 ncbigene-flybase_gene +< 2024-06-03T09:07:47 ncbigene-flybase_gene togoid-config config/ncbigene-flybase_gene update # Success: output/tsv/ncbigene-flybase_gene.tsv is updated -> 2024-05-25T15:12:41 ncbigene-flybase_gene +> 2024-06-03T09:09:03 ncbigene-flybase_gene Rule for TSV (output/tsv/ncbigene-flybase_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-flybase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:12:41 +0900 +timestamp: 2024-06-03 09:09:03 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:12:41 +0900) -latest-prerequisite time: 2024-05-25 15:12:41 +0900 +--prepare:ncbigene (2024-06-03 09:09:03 +0900) +latest-prerequisite time: 2024-06-03 09:09:03 +0900 ................................ ### Update TSV for ncbigene-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-go.tsv is newer than config/ncbigene-go/config.yaml # File output/tsv/ncbigene-go.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-go/config.yaml => output/tsv/ncbigene-go.tsv -< 2024-05-25T15:12:41 ncbigene-go +< 2024-06-03T09:09:03 ncbigene-go togoid-config config/ncbigene-go update # Success: output/tsv/ncbigene-go.tsv is updated -> 2024-05-25T15:17:19 ncbigene-go +> 2024-06-03T09:14:26 ncbigene-go Rule for TSV (output/tsv/ncbigene-go.tsv) ------------------------------ Investigating output/tsv/ncbigene-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:17:19 +0900 +timestamp: 2024-06-03 09:14:26 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:17:19 +0900) -latest-prerequisite time: 2024-05-25 15:17:19 +0900 +--prepare:ncbigene (2024-06-03 09:14:26 +0900) +latest-prerequisite time: 2024-06-03 09:14:26 +0900 ................................ ### Update TSV for ncbigene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-hgnc.tsv is newer than config/ncbigene-hgnc/config.yaml # File output/tsv/ncbigene-hgnc.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-hgnc/config.yaml => output/tsv/ncbigene-hgnc.tsv -< 2024-05-25T15:17:19 ncbigene-hgnc +< 2024-06-03T09:14:26 ncbigene-hgnc togoid-config config/ncbigene-hgnc update # Success: output/tsv/ncbigene-hgnc.tsv is updated -> 2024-05-25T15:17:20 ncbigene-hgnc +> 2024-06-03T09:14:27 ncbigene-hgnc Rule for TSV (output/tsv/ncbigene-hgnc.tsv) ------------------------------ Investigating output/tsv/ncbigene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:17:20 +0900 +timestamp: 2024-06-03 09:14:27 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:17:20 +0900) -latest-prerequisite time: 2024-05-25 15:17:20 +0900 +--prepare:ncbigene (2024-06-03 09:14:27 +0900) +latest-prerequisite time: 2024-06-03 09:14:27 +0900 ................................ ### Update TSV for ncbigene-mgi_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-mgi_gene.tsv is newer than config/ncbigene-mgi_gene/config.yaml # File output/tsv/ncbigene-mgi_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-mgi_gene/config.yaml => output/tsv/ncbigene-mgi_gene.tsv -< 2024-05-25T15:17:20 ncbigene-mgi_gene +< 2024-06-03T09:14:27 ncbigene-mgi_gene togoid-config config/ncbigene-mgi_gene update # Success: output/tsv/ncbigene-mgi_gene.tsv is updated -> 2024-05-25T15:18:22 ncbigene-mgi_gene +> 2024-06-03T09:15:29 ncbigene-mgi_gene Rule for TSV (output/tsv/ncbigene-mgi_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-mgi_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:18:22 +0900 +timestamp: 2024-06-03 09:15:29 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:18:22 +0900) -latest-prerequisite time: 2024-05-25 15:18:22 +0900 +--prepare:ncbigene (2024-06-03 09:15:29 +0900) +latest-prerequisite time: 2024-06-03 09:15:29 +0900 ................................ ### Update TSV for ncbigene-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-mirbase.tsv is newer than config/ncbigene-mirbase/config.yaml # File output/tsv/ncbigene-mirbase.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-mirbase/config.yaml => output/tsv/ncbigene-mirbase.tsv -< 2024-05-25T15:18:22 ncbigene-mirbase +< 2024-06-03T09:15:29 ncbigene-mirbase togoid-config config/ncbigene-mirbase update # Success: output/tsv/ncbigene-mirbase.tsv is updated -> 2024-05-25T15:20:05 ncbigene-mirbase +> 2024-06-03T09:17:13 ncbigene-mirbase Rule for TSV (output/tsv/ncbigene-mirbase.tsv) ------------------------------ Investigating output/tsv/ncbigene-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:20:05 +0900 +timestamp: 2024-06-03 09:17:13 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:20:05 +0900) -latest-prerequisite time: 2024-05-25 15:20:05 +0900 +--prepare:ncbigene (2024-06-03 09:17:13 +0900) +latest-prerequisite time: 2024-06-03 09:17:13 +0900 ................................ ### Update TSV for ncbigene-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-omim_gene.tsv is newer than config/ncbigene-omim_gene/config.yaml # File output/tsv/ncbigene-omim_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-omim_gene/config.yaml => output/tsv/ncbigene-omim_gene.tsv -< 2024-05-25T15:20:05 ncbigene-omim_gene +< 2024-06-03T09:17:13 ncbigene-omim_gene togoid-config config/ncbigene-omim_gene update # Success: output/tsv/ncbigene-omim_gene.tsv is updated -> 2024-05-25T15:20:06 ncbigene-omim_gene +> 2024-06-03T09:17:14 ncbigene-omim_gene Rule for TSV (output/tsv/ncbigene-omim_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-omim_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:20:05 +0900 +timestamp: 2024-06-03 09:17:14 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:20:06 +0900) -latest-prerequisite time: 2024-05-25 15:20:06 +0900 +--prepare:ncbigene (2024-06-03 09:17:14 +0900) +latest-prerequisite time: 2024-06-03 09:17:14 +0900 ................................ ### Update TSV for ncbigene-refseq_genomic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_genomic.tsv is newer than config/ncbigene-refseq_genomic/config.yaml # File output/tsv/ncbigene-refseq_genomic.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_genomic/config.yaml => output/tsv/ncbigene-refseq_genomic.tsv -< 2024-05-25T15:20:06 ncbigene-refseq_genomic +< 2024-06-03T09:17:14 ncbigene-refseq_genomic togoid-config config/ncbigene-refseq_genomic update # Success: output/tsv/ncbigene-refseq_genomic.tsv is updated -> 2024-05-25T15:23:59 ncbigene-refseq_genomic +> 2024-06-03T09:21:28 ncbigene-refseq_genomic Rule for TSV (output/tsv/ncbigene-refseq_genomic.tsv) ------------------------------ Investigating output/tsv/ncbigene-refseq_genomic.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:23:59 +0900 +timestamp: 2024-06-03 09:21:28 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:23:59 +0900) -latest-prerequisite time: 2024-05-25 15:23:59 +0900 +--prepare:ncbigene (2024-06-03 09:21:28 +0900) +latest-prerequisite time: 2024-06-03 09:21:28 +0900 ................................ ### Update TSV for ncbigene-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_protein.tsv is newer than config/ncbigene-refseq_protein/config.yaml # File output/tsv/ncbigene-refseq_protein.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_protein/config.yaml => output/tsv/ncbigene-refseq_protein.tsv -< 2024-05-25T15:23:59 ncbigene-refseq_protein +< 2024-06-03T09:21:28 ncbigene-refseq_protein togoid-config config/ncbigene-refseq_protein update # Success: output/tsv/ncbigene-refseq_protein.tsv is updated -> 2024-05-25T15:28:16 ncbigene-refseq_protein +> 2024-06-03T09:26:29 ncbigene-refseq_protein Rule for TSV (output/tsv/ncbigene-refseq_protein.tsv) ------------------------------ Investigating output/tsv/ncbigene-refseq_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:28:16 +0900 +timestamp: 2024-06-03 09:26:29 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:28:16 +0900) -latest-prerequisite time: 2024-05-25 15:28:16 +0900 +--prepare:ncbigene (2024-06-03 09:26:29 +0900) +latest-prerequisite time: 2024-06-03 09:26:29 +0900 ................................ ### Update TSV for ncbigene-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_rna.tsv is newer than config/ncbigene-refseq_rna/config.yaml # File output/tsv/ncbigene-refseq_rna.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_rna/config.yaml => output/tsv/ncbigene-refseq_rna.tsv -< 2024-05-25T15:28:16 ncbigene-refseq_rna +< 2024-06-03T09:26:29 ncbigene-refseq_rna togoid-config config/ncbigene-refseq_rna update # Success: output/tsv/ncbigene-refseq_rna.tsv is updated -> 2024-05-25T15:32:01 ncbigene-refseq_rna +> 2024-06-03T09:30:18 ncbigene-refseq_rna Rule for TSV (output/tsv/ncbigene-refseq_rna.tsv) ------------------------------ Investigating output/tsv/ncbigene-refseq_rna.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:32:01 +0900 +timestamp: 2024-06-03 09:30:18 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:32:01 +0900) -latest-prerequisite time: 2024-05-25 15:32:01 +0900 +--prepare:ncbigene (2024-06-03 09:30:18 +0900) +latest-prerequisite time: 2024-06-03 09:30:18 +0900 ................................ ### Update TSV for ncbigene-rgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-rgd.tsv is newer than config/ncbigene-rgd/config.yaml # File output/tsv/ncbigene-rgd.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-rgd/config.yaml => output/tsv/ncbigene-rgd.tsv -< 2024-05-25T15:32:01 ncbigene-rgd +< 2024-06-03T09:30:18 ncbigene-rgd togoid-config config/ncbigene-rgd update # Success: output/tsv/ncbigene-rgd.tsv is updated -> 2024-05-25T15:33:03 ncbigene-rgd +> 2024-06-03T09:31:19 ncbigene-rgd Rule for TSV (output/tsv/ncbigene-rgd.tsv) ------------------------------ Investigating output/tsv/ncbigene-rgd.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:33:03 +0900 +timestamp: 2024-06-03 09:31:19 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:33:03 +0900) -latest-prerequisite time: 2024-05-25 15:33:03 +0900 +--prepare:ncbigene (2024-06-03 09:31:19 +0900) +latest-prerequisite time: 2024-06-03 09:31:19 +0900 ................................ ### Update TSV for ncbigene-sgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-sgd.tsv is newer than config/ncbigene-sgd/config.yaml # File output/tsv/ncbigene-sgd.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-sgd/config.yaml => output/tsv/ncbigene-sgd.tsv -< 2024-05-25T15:33:03 ncbigene-sgd +< 2024-06-03T09:31:19 ncbigene-sgd togoid-config config/ncbigene-sgd update # Success: output/tsv/ncbigene-sgd.tsv is updated -> 2024-05-25T15:34:14 ncbigene-sgd +> 2024-06-03T09:32:31 ncbigene-sgd Rule for TSV (output/tsv/ncbigene-sgd.tsv) ------------------------------ Investigating output/tsv/ncbigene-sgd.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:34:14 +0900 +timestamp: 2024-06-03 09:32:31 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:34:14 +0900) -latest-prerequisite time: 2024-05-25 15:34:14 +0900 +--prepare:ncbigene (2024-06-03 09:32:31 +0900) +latest-prerequisite time: 2024-06-03 09:32:31 +0900 ................................ ### Update TSV for ncbigene-tair if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-tair.tsv is newer than config/ncbigene-tair/config.yaml # File output/tsv/ncbigene-tair.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-tair/config.yaml => output/tsv/ncbigene-tair.tsv -< 2024-05-25T15:34:14 ncbigene-tair +< 2024-06-03T09:32:31 ncbigene-tair togoid-config config/ncbigene-tair update # Success: output/tsv/ncbigene-tair.tsv is updated -> 2024-05-25T15:35:25 ncbigene-tair +> 2024-06-03T09:33:42 ncbigene-tair Rule for TSV (output/tsv/ncbigene-tair.tsv) ------------------------------ Investigating output/tsv/ncbigene-tair.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:35:25 +0900 +timestamp: 2024-06-03 09:33:42 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:35:25 +0900) -latest-prerequisite time: 2024-05-25 15:35:25 +0900 +--prepare:ncbigene (2024-06-03 09:33:42 +0900) +latest-prerequisite time: 2024-06-03 09:33:42 +0900 ................................ ### Update TSV for ncbigene-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-taxonomy.tsv is newer than config/ncbigene-taxonomy/config.yaml # File output/tsv/ncbigene-taxonomy.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-taxonomy/config.yaml => output/tsv/ncbigene-taxonomy.tsv -< 2024-05-25T15:35:25 ncbigene-taxonomy +< 2024-06-03T09:33:42 ncbigene-taxonomy togoid-config config/ncbigene-taxonomy update # Success: output/tsv/ncbigene-taxonomy.tsv is updated -> 2024-05-25T15:36:08 ncbigene-taxonomy +> 2024-06-03T09:34:28 ncbigene-taxonomy Rule for TSV (output/tsv/ncbigene-taxonomy.tsv) ------------------------------ Investigating output/tsv/ncbigene-taxonomy.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:36:08 +0900 +timestamp: 2024-06-03 09:34:28 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:36:08 +0900) -latest-prerequisite time: 2024-05-25 15:36:08 +0900 +--prepare:ncbigene (2024-06-03 09:34:28 +0900) +latest-prerequisite time: 2024-06-03 09:34:28 +0900 ................................ ### Update TSV for ncbigene-vgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-vgnc.tsv is newer than config/ncbigene-vgnc/config.yaml # File output/tsv/ncbigene-vgnc.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-vgnc/config.yaml => output/tsv/ncbigene-vgnc.tsv -< 2024-05-25T15:36:08 ncbigene-vgnc +< 2024-06-03T09:34:29 ncbigene-vgnc togoid-config config/ncbigene-vgnc update # Success: output/tsv/ncbigene-vgnc.tsv is updated -> 2024-05-25T15:37:20 ncbigene-vgnc +> 2024-06-03T09:35:40 ncbigene-vgnc Rule for TSV (output/tsv/ncbigene-vgnc.tsv) ------------------------------ Investigating output/tsv/ncbigene-vgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:37:20 +0900 +timestamp: 2024-06-03 09:35:40 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:37:20 +0900) -latest-prerequisite time: 2024-05-25 15:37:20 +0900 +--prepare:ncbigene (2024-06-03 09:35:40 +0900) +latest-prerequisite time: 2024-06-03 09:35:40 +0900 ................................ ### Update TSV for ncbigene-wormbase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-wormbase_gene.tsv is newer than config/ncbigene-wormbase_gene/config.yaml # File output/tsv/ncbigene-wormbase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-wormbase_gene/config.yaml => output/tsv/ncbigene-wormbase_gene.tsv -< 2024-05-25T15:37:20 ncbigene-wormbase_gene +< 2024-06-03T09:35:40 ncbigene-wormbase_gene togoid-config config/ncbigene-wormbase_gene update # Success: output/tsv/ncbigene-wormbase_gene.tsv is updated -> 2024-05-25T15:38:31 ncbigene-wormbase_gene +> 2024-06-03T09:36:51 ncbigene-wormbase_gene Rule for TSV (output/tsv/ncbigene-wormbase_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-wormbase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:38:31 +0900 +timestamp: 2024-06-03 09:36:51 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:38:31 +0900) -latest-prerequisite time: 2024-05-25 15:38:31 +0900 +--prepare:ncbigene (2024-06-03 09:36:51 +0900) +latest-prerequisite time: 2024-06-03 09:36:51 +0900 ................................ ### Update TSV for ncbigene-xenbase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-xenbase_gene.tsv is newer than config/ncbigene-xenbase_gene/config.yaml # File output/tsv/ncbigene-xenbase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-xenbase_gene/config.yaml => output/tsv/ncbigene-xenbase_gene.tsv -< 2024-05-25T15:38:31 ncbigene-xenbase_gene +< 2024-06-03T09:36:51 ncbigene-xenbase_gene togoid-config config/ncbigene-xenbase_gene update # Success: output/tsv/ncbigene-xenbase_gene.tsv is updated -> 2024-05-25T15:39:42 ncbigene-xenbase_gene +> 2024-06-03T09:38:03 ncbigene-xenbase_gene Rule for TSV (output/tsv/ncbigene-xenbase_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-xenbase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:39:42 +0900 +timestamp: 2024-06-03 09:38:03 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:39:42 +0900) -latest-prerequisite time: 2024-05-25 15:39:42 +0900 +--prepare:ncbigene (2024-06-03 09:38:03 +0900) +latest-prerequisite time: 2024-06-03 09:38:03 +0900 ................................ ### Update TSV for ncbigene-zfin_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-zfin_gene.tsv is newer than config/ncbigene-zfin_gene/config.yaml # File output/tsv/ncbigene-zfin_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-zfin_gene/config.yaml => output/tsv/ncbigene-zfin_gene.tsv -< 2024-05-25T15:39:42 ncbigene-zfin_gene +< 2024-06-03T09:38:03 ncbigene-zfin_gene togoid-config config/ncbigene-zfin_gene update # Success: output/tsv/ncbigene-zfin_gene.tsv is updated -> 2024-05-25T15:40:53 ncbigene-zfin_gene +> 2024-06-03T09:39:15 ncbigene-zfin_gene Rule for TSV (output/tsv/ncbigene-zfin_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-zfin_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:40:53 +0900 +timestamp: 2024-06-03 09:39:15 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-05-25 15:40:53 +0900) -latest-prerequisite time: 2024-05-25 15:40:53 +0900 +--prepare:ncbigene (2024-06-03 09:39:15 +0900) +latest-prerequisite time: 2024-06-03 09:39:15 +0900 ................................ ### Update TSV for ncit_disease-ncit_tissue if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncit_disease-ncit_tissue.tsv is newer than config/ncit_disease-ncit_tissue/config.yaml # File output/tsv/ncit_disease-ncit_tissue.tsv has no timestamp file -# File output/tsv/ncit_disease-ncit_tissue.tsv is created 7.454161488571482 days ago (will be updated when >5 days) +# File output/tsv/ncit_disease-ncit_tissue.tsv is created 8.748825932044687 days ago (will be updated when >5 days) ## Update config/ncit_disease-ncit_tissue/config.yaml => output/tsv/ncit_disease-ncit_tissue.tsv -< 2024-05-25T15:40:53 ncit_disease-ncit_tissue +< 2024-06-03T09:39:15 ncit_disease-ncit_tissue togoid-config config/ncit_disease-ncit_tissue update # Success: output/tsv/ncit_disease-ncit_tissue.tsv is updated -> 2024-05-25T15:40:56 ncit_disease-ncit_tissue +> 2024-06-03T09:39:18 ncit_disease-ncit_tissue Rule for TSV (output/tsv/ncit_disease-ncit_tissue.tsv) ------------------------------ Investigating output/tsv/ncit_disease-ncit_tissue.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:40:56 +0900 +timestamp: 2024-06-03 09:39:18 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for oma_protein-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3477,8 +3510,8 @@ task needed: true timestamp: 2023-10-13 19:34:15 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-05-25 15:40:56 +0900) -latest-prerequisite time: 2024-05-25 15:40:56 +0900 +--prepare:oma_protein (2024-06-03 09:39:18 +0900) +latest-prerequisite time: 2024-06-03 09:39:18 +0900 ................................ ### Update TSV for oma_protein-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3493,8 +3526,8 @@ task needed: true timestamp: 2023-10-13 19:43:07 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-05-25 15:40:56 +0900) -latest-prerequisite time: 2024-05-25 15:40:56 +0900 +--prepare:oma_protein (2024-06-03 09:39:18 +0900) +latest-prerequisite time: 2024-06-03 09:39:18 +0900 ................................ ### Update TSV for oma_protein-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3509,8 +3542,8 @@ task needed: true timestamp: 2023-10-20 20:12:58 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-05-25 15:40:56 +0900) -latest-prerequisite time: 2024-05-25 15:40:56 +0900 +--prepare:oma_protein (2024-06-03 09:39:18 +0900) +latest-prerequisite time: 2024-06-03 09:39:18 +0900 ................................ ### Update TSV for oma_protein-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3525,800 +3558,804 @@ task needed: true timestamp: 2023-10-13 19:43:31 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-05-25 15:40:56 +0900) -latest-prerequisite time: 2024-05-25 15:40:56 +0900 +--prepare:oma_protein (2024-06-03 09:39:18 +0900) +latest-prerequisite time: 2024-06-03 09:39:18 +0900 ................................ ### Update TSV for orphanet_gene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-ensembl_gene.tsv is newer than config/orphanet_gene-ensembl_gene/config.yaml # File output/tsv/orphanet_gene-ensembl_gene.tsv has no timestamp file -# File output/tsv/orphanet_gene-ensembl_gene.tsv is created 7.454189726321401 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-ensembl_gene.tsv is created 8.748853534898588 days ago (will be updated when >5 days) ## Update config/orphanet_gene-ensembl_gene/config.yaml => output/tsv/orphanet_gene-ensembl_gene.tsv -< 2024-05-25T15:40:56 orphanet_gene-ensembl_gene +< 2024-06-03T09:39:18 orphanet_gene-ensembl_gene togoid-config config/orphanet_gene-ensembl_gene update # Success: output/tsv/orphanet_gene-ensembl_gene.tsv is updated -> 2024-05-25T15:40:57 orphanet_gene-ensembl_gene +> 2024-06-03T09:39:18 orphanet_gene-ensembl_gene Rule for TSV (output/tsv/orphanet_gene-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-ensembl_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:40:57 +0900 +timestamp: 2024-06-03 09:39:18 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for orphanet_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-hgnc.tsv is newer than config/orphanet_gene-hgnc/config.yaml # File output/tsv/orphanet_gene-hgnc.tsv has no timestamp file -# File output/tsv/orphanet_gene-hgnc.tsv is created 7.4541907017097 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-hgnc.tsv is created 8.748854550214398 days ago (will be updated when >5 days) ## Update config/orphanet_gene-hgnc/config.yaml => output/tsv/orphanet_gene-hgnc.tsv -< 2024-05-25T15:40:57 orphanet_gene-hgnc +< 2024-06-03T09:39:18 orphanet_gene-hgnc togoid-config config/orphanet_gene-hgnc update # Success: output/tsv/orphanet_gene-hgnc.tsv is updated -> 2024-05-25T15:40:57 orphanet_gene-hgnc +> 2024-06-03T09:39:19 orphanet_gene-hgnc Rule for TSV (output/tsv/orphanet_gene-hgnc.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-hgnc.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:40:57 +0900 +timestamp: 2024-06-03 09:39:19 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for orphanet_gene-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-omim_gene.tsv is newer than config/orphanet_gene-omim_gene/config.yaml # File output/tsv/orphanet_gene-omim_gene.tsv has no timestamp file -# File output/tsv/orphanet_gene-omim_gene.tsv is created 7.4541923110013775 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-omim_gene.tsv is created 8.748855698277605 days ago (will be updated when >5 days) ## Update config/orphanet_gene-omim_gene/config.yaml => output/tsv/orphanet_gene-omim_gene.tsv -< 2024-05-25T15:40:57 orphanet_gene-omim_gene +< 2024-06-03T09:39:19 orphanet_gene-omim_gene togoid-config config/orphanet_gene-omim_gene update # Success: output/tsv/orphanet_gene-omim_gene.tsv is updated -> 2024-05-25T15:40:58 orphanet_gene-omim_gene +> 2024-06-03T09:39:19 orphanet_gene-omim_gene Rule for TSV (output/tsv/orphanet_gene-omim_gene.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-omim_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:40:58 +0900 +timestamp: 2024-06-03 09:39:19 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for orphanet_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-uniprot.tsv is newer than config/orphanet_gene-uniprot/config.yaml # File output/tsv/orphanet_gene-uniprot.tsv has no timestamp file -# File output/tsv/orphanet_gene-uniprot.tsv is created 7.45419259243463 days ago (will be updated when >5 days) +# File output/tsv/orphanet_gene-uniprot.tsv is created 8.74885617260912 days ago (will be updated when >5 days) ## Update config/orphanet_gene-uniprot/config.yaml => output/tsv/orphanet_gene-uniprot.tsv -< 2024-05-25T15:40:58 orphanet_gene-uniprot +< 2024-06-03T09:39:19 orphanet_gene-uniprot togoid-config config/orphanet_gene-uniprot update # Success: output/tsv/orphanet_gene-uniprot.tsv is updated -> 2024-05-25T15:40:58 orphanet_gene-uniprot +> 2024-06-03T09:39:20 orphanet_gene-uniprot Rule for TSV (output/tsv/orphanet_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:40:58 +0900 +timestamp: 2024-06-03 09:39:20 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for orphanet_phenotype-meddra if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-meddra.tsv is newer than config/orphanet_phenotype-meddra/config.yaml # File output/tsv/orphanet_phenotype-meddra.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-meddra.tsv is created 7.4541936985184725 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-meddra.tsv is created 8.748857881391805 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-meddra/config.yaml => output/tsv/orphanet_phenotype-meddra.tsv -< 2024-05-25T15:40:58 orphanet_phenotype-meddra +< 2024-06-03T09:39:20 orphanet_phenotype-meddra togoid-config config/orphanet_phenotype-meddra update # Success: output/tsv/orphanet_phenotype-meddra.tsv is updated -> 2024-05-25T15:40:59 orphanet_phenotype-meddra +> 2024-06-03T09:39:21 orphanet_phenotype-meddra Rule for TSV (output/tsv/orphanet_phenotype-meddra.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-meddra.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:40:59 +0900 +timestamp: 2024-06-03 09:39:21 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for orphanet_phenotype-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-mesh.tsv is newer than config/orphanet_phenotype-mesh/config.yaml # File output/tsv/orphanet_phenotype-mesh.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-mesh.tsv is created 7.454194674190648 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-mesh.tsv is created 8.748860890565672 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-mesh/config.yaml => output/tsv/orphanet_phenotype-mesh.tsv -< 2024-05-25T15:40:59 orphanet_phenotype-mesh +< 2024-06-03T09:39:21 orphanet_phenotype-mesh togoid-config config/orphanet_phenotype-mesh update # Success: output/tsv/orphanet_phenotype-mesh.tsv is updated -> 2024-05-25T15:40:59 orphanet_phenotype-mesh +> 2024-06-03T09:39:21 orphanet_phenotype-mesh Rule for TSV (output/tsv/orphanet_phenotype-mesh.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-mesh.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:40:59 +0900 +timestamp: 2024-06-03 09:39:21 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for orphanet_phenotype-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-omim_phenotype.tsv is newer than config/orphanet_phenotype-omim_phenotype/config.yaml # File output/tsv/orphanet_phenotype-omim_phenotype.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-omim_phenotype.tsv is created 7.454194280225382 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-omim_phenotype.tsv is created 8.74886167177205 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-omim_phenotype/config.yaml => output/tsv/orphanet_phenotype-omim_phenotype.tsv -< 2024-05-25T15:40:59 orphanet_phenotype-omim_phenotype +< 2024-06-03T09:39:21 orphanet_phenotype-omim_phenotype togoid-config config/orphanet_phenotype-omim_phenotype update # Success: output/tsv/orphanet_phenotype-omim_phenotype.tsv is updated -> 2024-05-25T15:41:00 orphanet_phenotype-omim_phenotype +> 2024-06-03T09:39:22 orphanet_phenotype-omim_phenotype Rule for TSV (output/tsv/orphanet_phenotype-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-omim_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:41:00 +0900 +timestamp: 2024-06-03 09:39:22 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for orphanet_phenotype-orphanet_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-orphanet_gene.tsv is newer than config/orphanet_phenotype-orphanet_gene/config.yaml # File output/tsv/orphanet_phenotype-orphanet_gene.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-orphanet_gene.tsv is created 7.454194384472939 days ago (will be updated when >5 days) +# File output/tsv/orphanet_phenotype-orphanet_gene.tsv is created 8.748864518315047 days ago (will be updated when >5 days) ## Update config/orphanet_phenotype-orphanet_gene/config.yaml => output/tsv/orphanet_phenotype-orphanet_gene.tsv -< 2024-05-25T15:41:00 orphanet_phenotype-orphanet_gene +< 2024-06-03T09:39:22 orphanet_phenotype-orphanet_gene togoid-config config/orphanet_phenotype-orphanet_gene update # Success: output/tsv/orphanet_phenotype-orphanet_gene.tsv is updated -> 2024-05-25T15:41:00 orphanet_phenotype-orphanet_gene +> 2024-06-03T09:39:24 orphanet_phenotype-orphanet_gene Rule for TSV (output/tsv/orphanet_phenotype-orphanet_gene.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-orphanet_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:41:00 +0900 +timestamp: 2024-06-03 09:39:23 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pdb-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-go.tsv is newer than config/pdb-go/config.yaml # File output/tsv/pdb-go.tsv has no timestamp file -# File output/tsv/pdb-go.tsv is created 7.454155033780185 days ago (will be updated when >5 days) +# File output/tsv/pdb-go.tsv is created 8.748836106809572 days ago (will be updated when >5 days) ## Update config/pdb-go/config.yaml => output/tsv/pdb-go.tsv -< 2024-05-25T15:41:00 pdb-go +< 2024-06-03T09:39:24 pdb-go togoid-config config/pdb-go update # Success: output/tsv/pdb-go.tsv is updated -> 2024-05-25T15:41:04 pdb-go +> 2024-06-03T09:39:30 pdb-go Rule for TSV (output/tsv/pdb-go.tsv) ------------------------------ Investigating output/tsv/pdb-go.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:41:04 +0900 +timestamp: 2024-06-03 09:39:30 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pdb-interpro if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-interpro.tsv is newer than config/pdb-interpro/config.yaml # File output/tsv/pdb-interpro.tsv has no timestamp file -# File output/tsv/pdb-interpro.tsv is created 7.454183013139837 days ago (will be updated when >5 days) +# File output/tsv/pdb-interpro.tsv is created 8.748888201385139 days ago (will be updated when >5 days) ## Update config/pdb-interpro/config.yaml => output/tsv/pdb-interpro.tsv -< 2024-05-25T15:41:04 pdb-interpro +< 2024-06-03T09:39:30 pdb-interpro togoid-config config/pdb-interpro update # Success: output/tsv/pdb-interpro.tsv is updated -> 2024-05-25T15:41:06 pdb-interpro +> 2024-06-03T09:39:31 pdb-interpro Rule for TSV (output/tsv/pdb-interpro.tsv) ------------------------------ Investigating output/tsv/pdb-interpro.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:41:06 +0900 +timestamp: 2024-06-03 09:39:31 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pdb-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-pdb_ccd.tsv is newer than config/pdb-pdb_ccd/config.yaml # File output/tsv/pdb-pdb_ccd.tsv has no timestamp file -# File output/tsv/pdb-pdb_ccd.tsv is created 7.454186352530312 days ago (will be updated when >5 days) +# File output/tsv/pdb-pdb_ccd.tsv is created 8.748892120749513 days ago (will be updated when >5 days) ## Update config/pdb-pdb_ccd/config.yaml => output/tsv/pdb-pdb_ccd.tsv -< 2024-05-25T15:41:06 pdb-pdb_ccd +< 2024-06-03T09:39:31 pdb-pdb_ccd togoid-config config/pdb-pdb_ccd update # Success: output/tsv/pdb-pdb_ccd.tsv is updated -> 2024-05-25T15:41:07 pdb-pdb_ccd +> 2024-06-03T09:39:32 pdb-pdb_ccd Rule for TSV (output/tsv/pdb-pdb_ccd.tsv) ------------------------------ Investigating output/tsv/pdb-pdb_ccd.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:41:07 +0900 +timestamp: 2024-06-03 09:39:32 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pdb-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-pfam.tsv is newer than config/pdb-pfam/config.yaml # File output/tsv/pdb-pfam.tsv has no timestamp file -# File output/tsv/pdb-pfam.tsv is created 7.45418909776905 days ago (will be updated when >5 days) +# File output/tsv/pdb-pfam.tsv is created 8.74889540011552 days ago (will be updated when >5 days) ## Update config/pdb-pfam/config.yaml => output/tsv/pdb-pfam.tsv -< 2024-05-25T15:41:07 pdb-pfam +< 2024-06-03T09:39:32 pdb-pfam togoid-config config/pdb-pfam update # Success: output/tsv/pdb-pfam.tsv is updated -> 2024-05-25T15:41:08 pdb-pfam +> 2024-06-03T09:39:33 pdb-pfam Rule for TSV (output/tsv/pdb-pfam.tsv) ------------------------------ Investigating output/tsv/pdb-pfam.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:41:08 +0900 +timestamp: 2024-06-03 09:39:33 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pdb-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-uniprot.tsv is newer than config/pdb-uniprot/config.yaml # File output/tsv/pdb-uniprot.tsv has no timestamp file -# File output/tsv/pdb-uniprot.tsv is created 7.454189555635706 days ago (will be updated when >5 days) +# File output/tsv/pdb-uniprot.tsv is created 8.748895548194966 days ago (will be updated when >5 days) ## Update config/pdb-uniprot/config.yaml => output/tsv/pdb-uniprot.tsv -< 2024-05-25T15:41:08 pdb-uniprot +< 2024-06-03T09:39:33 pdb-uniprot togoid-config config/pdb-uniprot update # Success: output/tsv/pdb-uniprot.tsv is updated -> 2024-05-25T15:41:09 pdb-uniprot +> 2024-06-03T09:39:34 pdb-uniprot Rule for TSV (output/tsv/pdb-uniprot.tsv) ------------------------------ Investigating output/tsv/pdb-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:41:09 +0900 +timestamp: 2024-06-03 09:39:34 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ -### Update TSV for prosite-prosite_prorule if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for prosite-prosite_prorule if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/prosite-prosite_prorule.tsv is newer than config/prosite-prosite_prorule/config.yaml -# File output/tsv/prosite-prosite_prorule.tsv is newer than input/prosite/download.lock -# => Preserving output/tsv/prosite-prosite_prorule.tsv +# File output/tsv/prosite-prosite_prorule.tsv is older than input/prosite/download.lock +## Update config/prosite-prosite_prorule/config.yaml => output/tsv/prosite-prosite_prorule.tsv +< 2024-06-03T09:39:34 prosite-prosite_prorule +togoid-config config/prosite-prosite_prorule update +# Success: output/tsv/prosite-prosite_prorule.tsv is updated +> 2024-06-03T09:39:36 prosite-prosite_prorule Rule for TSV (output/tsv/prosite-prosite_prorule.tsv) ------------------------------ Investigating output/tsv/prosite-prosite_prorule.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 09:24:09 +0900 +timestamp: 2024-06-03 09:39:36 +0900 pre-requisites: --output/tsv/ () ---prepare:prosite (2024-05-25 15:41:09 +0900) -latest-prerequisite time: 2024-05-25 15:41:09 +0900 +--prepare:prosite (2024-06-03 09:39:36 +0900) +latest-prerequisite time: 2024-06-03 09:39:36 +0900 ................................ ### Update TSV for pubchem_compound-atc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-atc.tsv is newer than config/pubchem_compound-atc/config.yaml # File output/tsv/pubchem_compound-atc.tsv has no timestamp file -# File output/tsv/pubchem_compound-atc.tsv is created 7.454196243038218 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-atc.tsv is created 8.748919774874896 days ago (will be updated when >5 days) ## Update config/pubchem_compound-atc/config.yaml => output/tsv/pubchem_compound-atc.tsv -< 2024-05-25T15:41:09 pubchem_compound-atc +< 2024-06-03T09:39:36 pubchem_compound-atc togoid-config config/pubchem_compound-atc update # Success: output/tsv/pubchem_compound-atc.tsv is updated -> 2024-05-25T15:41:09 pubchem_compound-atc +> 2024-06-03T09:39:36 pubchem_compound-atc Rule for TSV (output/tsv/pubchem_compound-atc.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-atc.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:41:09 +0900 +timestamp: 2024-06-03 09:39:36 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pubchem_compound-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-chebi.tsv is newer than config/pubchem_compound-chebi/config.yaml # File output/tsv/pubchem_compound-chebi.tsv has no timestamp file -# File output/tsv/pubchem_compound-chebi.tsv is created 7.454192588977234 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-chebi.tsv is created 8.748917123009722 days ago (will be updated when >5 days) ## Update config/pubchem_compound-chebi/config.yaml => output/tsv/pubchem_compound-chebi.tsv -< 2024-05-25T15:41:09 pubchem_compound-chebi +< 2024-06-03T09:39:36 pubchem_compound-chebi togoid-config config/pubchem_compound-chebi update # Success: output/tsv/pubchem_compound-chebi.tsv is updated -> 2024-05-25T15:41:10 pubchem_compound-chebi +> 2024-06-03T09:39:37 pubchem_compound-chebi Rule for TSV (output/tsv/pubchem_compound-chebi.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-chebi.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:41:10 +0900 +timestamp: 2024-06-03 09:39:37 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pubchem_compound-chembl_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-chembl_compound.tsv is newer than config/pubchem_compound-chembl_compound/config.yaml # File output/tsv/pubchem_compound-chembl_compound.tsv has no timestamp file -# File output/tsv/pubchem_compound-chembl_compound.tsv is created 7.454145588624318 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-chembl_compound.tsv is created 8.748867147417684 days ago (will be updated when >5 days) ## Update config/pubchem_compound-chembl_compound/config.yaml => output/tsv/pubchem_compound-chembl_compound.tsv -< 2024-05-25T15:41:10 pubchem_compound-chembl_compound +< 2024-06-03T09:39:37 pubchem_compound-chembl_compound togoid-config config/pubchem_compound-chembl_compound update # Success: output/tsv/pubchem_compound-chembl_compound.tsv is updated -> 2024-05-25T15:41:15 pubchem_compound-chembl_compound +> 2024-06-03T09:39:42 pubchem_compound-chembl_compound Rule for TSV (output/tsv/pubchem_compound-chembl_compound.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-chembl_compound.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:41:15 +0900 +timestamp: 2024-06-03 09:39:42 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pubchem_compound-drugbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-drugbank.tsv is newer than config/pubchem_compound-drugbank/config.yaml # File output/tsv/pubchem_compound-drugbank.tsv has no timestamp file -# File output/tsv/pubchem_compound-drugbank.tsv is created 7.454199887131307 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-drugbank.tsv is created 8.748922735308414 days ago (will be updated when >5 days) ## Update config/pubchem_compound-drugbank/config.yaml => output/tsv/pubchem_compound-drugbank.tsv -< 2024-05-25T15:41:15 pubchem_compound-drugbank +< 2024-06-03T09:39:42 pubchem_compound-drugbank togoid-config config/pubchem_compound-drugbank update # Success: output/tsv/pubchem_compound-drugbank.tsv is updated -> 2024-05-25T15:41:15 pubchem_compound-drugbank +> 2024-06-03T09:39:43 pubchem_compound-drugbank Rule for TSV (output/tsv/pubchem_compound-drugbank.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-drugbank.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:41:15 +0900 +timestamp: 2024-06-03 09:39:43 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pubchem_compound-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-glytoucan.tsv is newer than config/pubchem_compound-glytoucan/config.yaml # File output/tsv/pubchem_compound-glytoucan.tsv has no timestamp file -# File output/tsv/pubchem_compound-glytoucan.tsv is created 7.454199186626864 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-glytoucan.tsv is created 8.748922046449294 days ago (will be updated when >5 days) ## Update config/pubchem_compound-glytoucan/config.yaml => output/tsv/pubchem_compound-glytoucan.tsv -< 2024-05-25T15:41:15 pubchem_compound-glytoucan +< 2024-06-03T09:39:43 pubchem_compound-glytoucan togoid-config config/pubchem_compound-glytoucan update # Success: output/tsv/pubchem_compound-glytoucan.tsv is updated -> 2024-05-25T15:41:16 pubchem_compound-glytoucan +> 2024-06-03T09:39:43 pubchem_compound-glytoucan Rule for TSV (output/tsv/pubchem_compound-glytoucan.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-glytoucan.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:41:16 +0900 +timestamp: 2024-06-03 09:39:43 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pubchem_compound-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-inchi_key.tsv is newer than config/pubchem_compound-inchi_key/config.yaml # File output/tsv/pubchem_compound-inchi_key.tsv has no timestamp file -# File output/tsv/pubchem_compound-inchi_key.tsv is created 7.449571388941273 days ago (will be updated when >5 days) +# File output/tsv/pubchem_compound-inchi_key.tsv is created 8.74426820284861 days ago (will be updated when >5 days) ## Update config/pubchem_compound-inchi_key/config.yaml => output/tsv/pubchem_compound-inchi_key.tsv -< 2024-05-25T15:41:16 pubchem_compound-inchi_key +< 2024-06-03T09:39:43 pubchem_compound-inchi_key togoid-config config/pubchem_compound-inchi_key update # Success: output/tsv/pubchem_compound-inchi_key.tsv is updated -> 2024-05-25T15:47:58 pubchem_compound-inchi_key +> 2024-06-03T09:46:00 pubchem_compound-inchi_key Rule for TSV (output/tsv/pubchem_compound-inchi_key.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-inchi_key.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:47:58 +0900 +timestamp: 2024-06-03 09:46:00 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pubchem_pathway-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-ncbigene.tsv is newer than config/pubchem_pathway-ncbigene/config.yaml # File output/tsv/pubchem_pathway-ncbigene.tsv has no timestamp file -# File output/tsv/pubchem_pathway-ncbigene.tsv is created 7.454226483846713 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-ncbigene.tsv is created 8.748617603524375 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-ncbigene/config.yaml => output/tsv/pubchem_pathway-ncbigene.tsv -< 2024-05-25T15:47:58 pubchem_pathway-ncbigene +< 2024-06-03T09:46:00 pubchem_pathway-ncbigene togoid-config config/pubchem_pathway-ncbigene update # Success: output/tsv/pubchem_pathway-ncbigene.tsv is updated -> 2024-05-25T15:47:59 pubchem_pathway-ncbigene +> 2024-06-03T09:46:00 pubchem_pathway-ncbigene Rule for TSV (output/tsv/pubchem_pathway-ncbigene.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:47:59 +0900 +timestamp: 2024-06-03 09:46:00 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pubchem_pathway-pathbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-pathbank.tsv is newer than config/pubchem_pathway-pathbank/config.yaml # File output/tsv/pubchem_pathway-pathbank.tsv has no timestamp file -# File output/tsv/pubchem_pathway-pathbank.tsv is created 7.454226730558219 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-pathbank.tsv is created 8.748617515040658 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-pathbank/config.yaml => output/tsv/pubchem_pathway-pathbank.tsv -< 2024-05-25T15:47:59 pubchem_pathway-pathbank +< 2024-06-03T09:46:00 pubchem_pathway-pathbank togoid-config config/pubchem_pathway-pathbank update # Success: output/tsv/pubchem_pathway-pathbank.tsv is updated -> 2024-05-25T15:48:00 pubchem_pathway-pathbank +> 2024-06-03T09:46:01 pubchem_pathway-pathbank Rule for TSV (output/tsv/pubchem_pathway-pathbank.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-pathbank.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:48:00 +0900 +timestamp: 2024-06-03 09:46:01 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pubchem_pathway-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-pubchem_compound.tsv is newer than config/pubchem_pathway-pubchem_compound/config.yaml # File output/tsv/pubchem_pathway-pubchem_compound.tsv has no timestamp file -# File output/tsv/pubchem_pathway-pubchem_compound.tsv is created 7.454204405965185 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-pubchem_compound.tsv is created 8.748593997024953 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-pubchem_compound/config.yaml => output/tsv/pubchem_pathway-pubchem_compound.tsv -< 2024-05-25T15:48:00 pubchem_pathway-pubchem_compound +< 2024-06-03T09:46:01 pubchem_pathway-pubchem_compound togoid-config config/pubchem_pathway-pubchem_compound update # Success: output/tsv/pubchem_pathway-pubchem_compound.tsv is updated -> 2024-05-25T15:48:02 pubchem_pathway-pubchem_compound +> 2024-06-03T09:46:03 pubchem_pathway-pubchem_compound Rule for TSV (output/tsv/pubchem_pathway-pubchem_compound.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-pubchem_compound.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:48:02 +0900 +timestamp: 2024-06-03 09:46:03 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pubchem_pathway-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-reactome_pathway.tsv is newer than config/pubchem_pathway-reactome_pathway/config.yaml # File output/tsv/pubchem_pathway-reactome_pathway.tsv has no timestamp file -# File output/tsv/pubchem_pathway-reactome_pathway.tsv is created 7.454229130924688 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-reactome_pathway.tsv is created 8.748621182110682 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-reactome_pathway/config.yaml => output/tsv/pubchem_pathway-reactome_pathway.tsv -< 2024-05-25T15:48:02 pubchem_pathway-reactome_pathway +< 2024-06-03T09:46:03 pubchem_pathway-reactome_pathway togoid-config config/pubchem_pathway-reactome_pathway update # Success: output/tsv/pubchem_pathway-reactome_pathway.tsv is updated -> 2024-05-25T15:48:03 pubchem_pathway-reactome_pathway +> 2024-06-03T09:46:04 pubchem_pathway-reactome_pathway Rule for TSV (output/tsv/pubchem_pathway-reactome_pathway.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-reactome_pathway.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:48:03 +0900 +timestamp: 2024-06-03 09:46:04 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pubchem_pathway-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-uniprot.tsv is newer than config/pubchem_pathway-uniprot/config.yaml # File output/tsv/pubchem_pathway-uniprot.tsv has no timestamp file -# File output/tsv/pubchem_pathway-uniprot.tsv is created 7.4542160064104515 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-uniprot.tsv is created 8.748607309671561 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-uniprot/config.yaml => output/tsv/pubchem_pathway-uniprot.tsv -< 2024-05-25T15:48:03 pubchem_pathway-uniprot +< 2024-06-03T09:46:04 pubchem_pathway-uniprot togoid-config config/pubchem_pathway-uniprot update # Success: output/tsv/pubchem_pathway-uniprot.tsv is updated -> 2024-05-25T15:48:04 pubchem_pathway-uniprot +> 2024-06-03T09:46:05 pubchem_pathway-uniprot Rule for TSV (output/tsv/pubchem_pathway-uniprot.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:48:04 +0900 +timestamp: 2024-06-03 09:46:05 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for pubchem_pathway-wikipathways if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-wikipathways.tsv is newer than config/pubchem_pathway-wikipathways/config.yaml # File output/tsv/pubchem_pathway-wikipathways.tsv has no timestamp file -# File output/tsv/pubchem_pathway-wikipathways.tsv is created 7.454229211848264 days ago (will be updated when >5 days) +# File output/tsv/pubchem_pathway-wikipathways.tsv is created 8.748620268251852 days ago (will be updated when >5 days) ## Update config/pubchem_pathway-wikipathways/config.yaml => output/tsv/pubchem_pathway-wikipathways.tsv -< 2024-05-25T15:48:04 pubchem_pathway-wikipathways +< 2024-06-03T09:46:05 pubchem_pathway-wikipathways togoid-config config/pubchem_pathway-wikipathways update # Success: output/tsv/pubchem_pathway-wikipathways.tsv is updated -> 2024-05-25T15:48:05 pubchem_pathway-wikipathways +> 2024-06-03T09:46:06 pubchem_pathway-wikipathways Rule for TSV (output/tsv/pubchem_pathway-wikipathways.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-wikipathways.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 15:48:05 +0900 +timestamp: 2024-06-03 09:46:06 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for reactome_pathway-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-chebi.tsv is newer than config/reactome_pathway-chebi/config.yaml # File output/tsv/reactome_pathway-chebi.tsv has no timestamp file -# File output/tsv/reactome_pathway-chebi.tsv is created 7.454222244953507 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-chebi.tsv is created 8.748616869064536 days ago (will be updated when >5 days) ## Update config/reactome_pathway-chebi/config.yaml => output/tsv/reactome_pathway-chebi.tsv -< 2024-05-25T15:48:05 reactome_pathway-chebi +< 2024-06-03T09:46:06 reactome_pathway-chebi togoid-config config/reactome_pathway-chebi update # Success: output/tsv/reactome_pathway-chebi.tsv is updated -> 2024-05-25T15:48:05 reactome_pathway-chebi +> 2024-06-03T09:46:06 reactome_pathway-chebi Rule for TSV (output/tsv/reactome_pathway-chebi.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:48:05 +0900 +timestamp: 2024-06-03 09:46:06 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-05-25 15:48:05 +0900) -latest-prerequisite time: 2024-05-25 15:48:05 +0900 +--prepare:reactome (2024-06-03 09:46:06 +0900) +latest-prerequisite time: 2024-06-03 09:46:06 +0900 ................................ ### Update TSV for reactome_pathway-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-go.tsv is newer than config/reactome_pathway-go/config.yaml # File output/tsv/reactome_pathway-go.tsv has no timestamp file -# File output/tsv/reactome_pathway-go.tsv is created 7.454226346590579 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-go.tsv is created 8.748617594443935 days ago (will be updated when >5 days) ## Update config/reactome_pathway-go/config.yaml => output/tsv/reactome_pathway-go.tsv -< 2024-05-25T15:48:05 reactome_pathway-go +< 2024-06-03T09:46:06 reactome_pathway-go togoid-config config/reactome_pathway-go update # Success: output/tsv/reactome_pathway-go.tsv is updated -> 2024-05-25T15:48:06 reactome_pathway-go +> 2024-06-03T09:46:07 reactome_pathway-go Rule for TSV (output/tsv/reactome_pathway-go.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:48:06 +0900 +timestamp: 2024-06-03 09:46:07 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-05-25 15:48:06 +0900) -latest-prerequisite time: 2024-05-25 15:48:06 +0900 +--prepare:reactome (2024-06-03 09:46:07 +0900) +latest-prerequisite time: 2024-06-03 09:46:07 +0900 ................................ ### Update TSV for reactome_pathway-iuphar_ligand if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-iuphar_ligand.tsv is newer than config/reactome_pathway-iuphar_ligand/config.yaml # File output/tsv/reactome_pathway-iuphar_ligand.tsv has no timestamp file -# File output/tsv/reactome_pathway-iuphar_ligand.tsv is created 7.454227878339457 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-iuphar_ligand.tsv is created 8.748619693863958 days ago (will be updated when >5 days) ## Update config/reactome_pathway-iuphar_ligand/config.yaml => output/tsv/reactome_pathway-iuphar_ligand.tsv -< 2024-05-25T15:48:06 reactome_pathway-iuphar_ligand +< 2024-06-03T09:46:07 reactome_pathway-iuphar_ligand togoid-config config/reactome_pathway-iuphar_ligand update # Success: output/tsv/reactome_pathway-iuphar_ligand.tsv is updated -> 2024-05-25T15:48:06 reactome_pathway-iuphar_ligand +> 2024-06-03T09:46:07 reactome_pathway-iuphar_ligand Rule for TSV (output/tsv/reactome_pathway-iuphar_ligand.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-iuphar_ligand.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:48:06 +0900 +timestamp: 2024-06-03 09:46:07 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-05-25 15:48:06 +0900) -latest-prerequisite time: 2024-05-25 15:48:06 +0900 +--prepare:reactome (2024-06-03 09:46:07 +0900) +latest-prerequisite time: 2024-06-03 09:46:07 +0900 ................................ ### Update TSV for reactome_pathway-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-mirbase.tsv is newer than config/reactome_pathway-mirbase/config.yaml # File output/tsv/reactome_pathway-mirbase.tsv has no timestamp file -# File output/tsv/reactome_pathway-mirbase.tsv is created 7.45422930152853 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-mirbase.tsv is created 8.748621710842418 days ago (will be updated when >5 days) ## Update config/reactome_pathway-mirbase/config.yaml => output/tsv/reactome_pathway-mirbase.tsv -< 2024-05-25T15:48:06 reactome_pathway-mirbase +< 2024-06-03T09:46:07 reactome_pathway-mirbase togoid-config config/reactome_pathway-mirbase update # Success: output/tsv/reactome_pathway-mirbase.tsv is updated -> 2024-05-25T15:48:06 reactome_pathway-mirbase +> 2024-06-03T09:46:07 reactome_pathway-mirbase Rule for TSV (output/tsv/reactome_pathway-mirbase.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:48:06 +0900 +timestamp: 2024-06-03 09:46:07 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-05-25 15:48:06 +0900) -latest-prerequisite time: 2024-05-25 15:48:06 +0900 +--prepare:reactome (2024-06-03 09:46:07 +0900) +latest-prerequisite time: 2024-06-03 09:46:07 +0900 ................................ ### Update TSV for reactome_pathway-reactome_reaction if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-reactome_reaction.tsv is newer than config/reactome_pathway-reactome_reaction/config.yaml # File output/tsv/reactome_pathway-reactome_reaction.tsv has no timestamp file -# File output/tsv/reactome_pathway-reactome_reaction.tsv is created 7.4542194761526614 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-reactome_reaction.tsv is created 8.748611047394178 days ago (will be updated when >5 days) ## Update config/reactome_pathway-reactome_reaction/config.yaml => output/tsv/reactome_pathway-reactome_reaction.tsv -< 2024-05-25T15:48:06 reactome_pathway-reactome_reaction +< 2024-06-03T09:46:07 reactome_pathway-reactome_reaction togoid-config config/reactome_pathway-reactome_reaction update # Success: output/tsv/reactome_pathway-reactome_reaction.tsv is updated -> 2024-05-25T15:48:08 reactome_pathway-reactome_reaction +> 2024-06-03T09:46:09 reactome_pathway-reactome_reaction Rule for TSV (output/tsv/reactome_pathway-reactome_reaction.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-reactome_reaction.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:48:08 +0900 +timestamp: 2024-06-03 09:46:09 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-05-25 15:48:08 +0900) -latest-prerequisite time: 2024-05-25 15:48:08 +0900 +--prepare:reactome (2024-06-03 09:46:09 +0900) +latest-prerequisite time: 2024-06-03 09:46:09 +0900 ................................ ### Update TSV for reactome_pathway-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-uniprot.tsv is newer than config/reactome_pathway-uniprot/config.yaml # File output/tsv/reactome_pathway-uniprot.tsv has no timestamp file -# File output/tsv/reactome_pathway-uniprot.tsv is created 7.454198564360208 days ago (will be updated when >5 days) +# File output/tsv/reactome_pathway-uniprot.tsv is created 8.74860772551199 days ago (will be updated when >5 days) ## Update config/reactome_pathway-uniprot/config.yaml => output/tsv/reactome_pathway-uniprot.tsv -< 2024-05-25T15:48:08 reactome_pathway-uniprot +< 2024-06-03T09:46:09 reactome_pathway-uniprot togoid-config config/reactome_pathway-uniprot update # Success: output/tsv/reactome_pathway-uniprot.tsv is updated -> 2024-05-25T15:48:09 reactome_pathway-uniprot +> 2024-06-03T09:46:10 reactome_pathway-uniprot Rule for TSV (output/tsv/reactome_pathway-uniprot.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:48:09 +0900 +timestamp: 2024-06-03 09:46:10 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-05-25 15:48:09 +0900) -latest-prerequisite time: 2024-05-25 15:48:09 +0900 +--prepare:reactome (2024-06-03 09:46:10 +0900) +latest-prerequisite time: 2024-06-03 09:46:10 +0900 ................................ ### Update TSV for reactome_reaction-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-chebi.tsv is newer than config/reactome_reaction-chebi/config.yaml # File output/tsv/reactome_reaction-chebi.tsv has no timestamp file -# File output/tsv/reactome_reaction-chebi.tsv is created 7.454206629088553 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-chebi.tsv is created 8.74861792152074 days ago (will be updated when >5 days) ## Update config/reactome_reaction-chebi/config.yaml => output/tsv/reactome_reaction-chebi.tsv -< 2024-05-25T15:48:09 reactome_reaction-chebi +< 2024-06-03T09:46:10 reactome_reaction-chebi togoid-config config/reactome_reaction-chebi update # Success: output/tsv/reactome_reaction-chebi.tsv is updated -> 2024-05-25T15:48:09 reactome_reaction-chebi +> 2024-06-03T09:46:11 reactome_reaction-chebi Rule for TSV (output/tsv/reactome_reaction-chebi.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:48:09 +0900 +timestamp: 2024-06-03 09:46:11 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-05-25 15:48:09 +0900) -latest-prerequisite time: 2024-05-25 15:48:09 +0900 +--prepare:reactome (2024-06-03 09:46:11 +0900) +latest-prerequisite time: 2024-06-03 09:46:11 +0900 ................................ ### Update TSV for reactome_reaction-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-go.tsv is newer than config/reactome_reaction-go/config.yaml # File output/tsv/reactome_reaction-go.tsv has no timestamp file -# File output/tsv/reactome_reaction-go.tsv is created 7.454206133046156 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-go.tsv is created 8.74861886391933 days ago (will be updated when >5 days) ## Update config/reactome_reaction-go/config.yaml => output/tsv/reactome_reaction-go.tsv -< 2024-05-25T15:48:09 reactome_reaction-go +< 2024-06-03T09:46:11 reactome_reaction-go togoid-config config/reactome_reaction-go update # Success: output/tsv/reactome_reaction-go.tsv is updated -> 2024-05-25T15:48:10 reactome_reaction-go +> 2024-06-03T09:46:11 reactome_reaction-go Rule for TSV (output/tsv/reactome_reaction-go.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:48:10 +0900 +timestamp: 2024-06-03 09:46:11 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-05-25 15:48:10 +0900) -latest-prerequisite time: 2024-05-25 15:48:10 +0900 +--prepare:reactome (2024-06-03 09:46:11 +0900) +latest-prerequisite time: 2024-06-03 09:46:11 +0900 ................................ ### Update TSV for reactome_reaction-iuphar_ligand if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-iuphar_ligand.tsv is newer than config/reactome_reaction-iuphar_ligand/config.yaml # File output/tsv/reactome_reaction-iuphar_ligand.tsv has no timestamp file -# File output/tsv/reactome_reaction-iuphar_ligand.tsv is created 7.454207781209444 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-iuphar_ligand.tsv is created 8.748621034045568 days ago (will be updated when >5 days) ## Update config/reactome_reaction-iuphar_ligand/config.yaml => output/tsv/reactome_reaction-iuphar_ligand.tsv -< 2024-05-25T15:48:10 reactome_reaction-iuphar_ligand +< 2024-06-03T09:46:11 reactome_reaction-iuphar_ligand togoid-config config/reactome_reaction-iuphar_ligand update # Success: output/tsv/reactome_reaction-iuphar_ligand.tsv is updated -> 2024-05-25T15:48:10 reactome_reaction-iuphar_ligand +> 2024-06-03T09:46:11 reactome_reaction-iuphar_ligand Rule for TSV (output/tsv/reactome_reaction-iuphar_ligand.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-iuphar_ligand.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:48:10 +0900 +timestamp: 2024-06-03 09:46:11 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-05-25 15:48:10 +0900) -latest-prerequisite time: 2024-05-25 15:48:10 +0900 +--prepare:reactome (2024-06-03 09:46:11 +0900) +latest-prerequisite time: 2024-06-03 09:46:11 +0900 ................................ ### Update TSV for reactome_reaction-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-mirbase.tsv is newer than config/reactome_reaction-mirbase/config.yaml # File output/tsv/reactome_reaction-mirbase.tsv has no timestamp file -# File output/tsv/reactome_reaction-mirbase.tsv is created 7.454208202137198 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-mirbase.tsv is created 8.748622305360556 days ago (will be updated when >5 days) ## Update config/reactome_reaction-mirbase/config.yaml => output/tsv/reactome_reaction-mirbase.tsv -< 2024-05-25T15:48:10 reactome_reaction-mirbase +< 2024-06-03T09:46:11 reactome_reaction-mirbase togoid-config config/reactome_reaction-mirbase update # Success: output/tsv/reactome_reaction-mirbase.tsv is updated -> 2024-05-25T15:48:10 reactome_reaction-mirbase +> 2024-06-03T09:46:12 reactome_reaction-mirbase Rule for TSV (output/tsv/reactome_reaction-mirbase.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:48:10 +0900 +timestamp: 2024-06-03 09:46:12 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-05-25 15:48:10 +0900) -latest-prerequisite time: 2024-05-25 15:48:10 +0900 +--prepare:reactome (2024-06-03 09:46:12 +0900) +latest-prerequisite time: 2024-06-03 09:46:12 +0900 ................................ ### Update TSV for reactome_reaction-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-uniprot.tsv is newer than config/reactome_reaction-uniprot/config.yaml # File output/tsv/reactome_reaction-uniprot.tsv has no timestamp file -# File output/tsv/reactome_reaction-uniprot.tsv is created 7.454193986205127 days ago (will be updated when >5 days) +# File output/tsv/reactome_reaction-uniprot.tsv is created 8.748612349347917 days ago (will be updated when >5 days) ## Update config/reactome_reaction-uniprot/config.yaml => output/tsv/reactome_reaction-uniprot.tsv -< 2024-05-25T15:48:10 reactome_reaction-uniprot +< 2024-06-03T09:46:12 reactome_reaction-uniprot togoid-config config/reactome_reaction-uniprot update # Success: output/tsv/reactome_reaction-uniprot.tsv is updated -> 2024-05-25T15:48:11 reactome_reaction-uniprot +> 2024-06-03T09:46:13 reactome_reaction-uniprot Rule for TSV (output/tsv/reactome_reaction-uniprot.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:48:11 +0900 +timestamp: 2024-06-03 09:46:13 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-05-25 15:48:11 +0900) -latest-prerequisite time: 2024-05-25 15:48:11 +0900 +--prepare:reactome (2024-06-03 09:46:13 +0900) +latest-prerequisite time: 2024-06-03 09:46:13 +0900 ................................ ### Update TSV for refseq_protein-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/refseq_protein-uniprot.tsv is newer than config/refseq_protein-uniprot/config.yaml # File output/tsv/refseq_protein-uniprot.tsv is older than input/refseq_protein/download.lock ## Update config/refseq_protein-uniprot/config.yaml => output/tsv/refseq_protein-uniprot.tsv -< 2024-05-25T15:48:12 refseq_protein-uniprot +< 2024-06-03T09:46:13 refseq_protein-uniprot togoid-config config/refseq_protein-uniprot update # Success: output/tsv/refseq_protein-uniprot.tsv is updated -> 2024-05-25T15:54:54 refseq_protein-uniprot +> 2024-06-03T09:52:50 refseq_protein-uniprot Rule for TSV (output/tsv/refseq_protein-uniprot.tsv) ------------------------------ Investigating output/tsv/refseq_protein-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:54:54 +0900 +timestamp: 2024-06-03 09:52:50 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_protein (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--prepare:refseq_protein (2024-06-03 09:52:50 +0900) +latest-prerequisite time: 2024-06-03 09:52:50 +0900 ................................ ### Update TSV for refseq_rna-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4333,8 +4370,8 @@ task needed: true timestamp: 2024-05-18 05:19:02 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--prepare:refseq_rna (2024-06-03 09:52:50 +0900) +latest-prerequisite time: 2024-06-03 09:52:50 +0900 ................................ ### Update TSV for refseq_rna-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4349,8 +4386,8 @@ task needed: true timestamp: 2024-05-18 05:21:23 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--prepare:refseq_rna (2024-06-03 09:52:50 +0900) +latest-prerequisite time: 2024-06-03 09:52:50 +0900 ................................ ### Update TSV for refseq_rna-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4365,8 +4402,8 @@ task needed: true timestamp: 2024-05-18 05:24:42 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--prepare:refseq_rna (2024-06-03 09:52:50 +0900) +latest-prerequisite time: 2024-06-03 09:52:50 +0900 ................................ ### Update TSV for refseq_rna-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4381,8 +4418,8 @@ task needed: true timestamp: 2024-05-18 05:26:23 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--prepare:refseq_rna (2024-06-03 09:52:50 +0900) +latest-prerequisite time: 2024-06-03 09:52:50 +0900 ................................ ### Update TSV for refseq_rna-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4397,8 +4434,8 @@ task needed: true timestamp: 2024-05-18 05:28:19 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--prepare:refseq_rna (2024-06-03 09:52:50 +0900) +latest-prerequisite time: 2024-06-03 09:52:50 +0900 ................................ ### Update TSV for refseq_rna-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4413,8 +4450,8 @@ task needed: true timestamp: 2024-05-18 05:31:30 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--prepare:refseq_rna (2024-06-03 09:52:50 +0900) +latest-prerequisite time: 2024-06-03 09:52:50 +0900 ................................ ### Update TSV for refseq_rna-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4429,1131 +4466,1231 @@ task needed: true timestamp: 2024-05-18 05:34:14 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--prepare:refseq_rna (2024-06-03 09:52:50 +0900) +latest-prerequisite time: 2024-06-03 09:52:50 +0900 ................................ -### Update TSV for rhea-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for rhea-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/rhea-chebi.tsv is newer than config/rhea-chebi/config.yaml -# File output/tsv/rhea-chebi.tsv is newer than input/rhea/download.lock -# => Preserving output/tsv/rhea-chebi.tsv +# File output/tsv/rhea-chebi.tsv is older than input/rhea/download.lock +## Update config/rhea-chebi/config.yaml => output/tsv/rhea-chebi.tsv +< 2024-06-03T09:52:50 rhea-chebi +togoid-config config/rhea-chebi update +# Success: output/tsv/rhea-chebi.tsv is updated +> 2024-06-03T09:52:51 rhea-chebi Rule for TSV (output/tsv/rhea-chebi.tsv) ------------------------------ Investigating output/tsv/rhea-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 09:38:01 +0900 +timestamp: 2024-06-03 09:52:51 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--prepare:rhea (2024-06-03 09:52:51 +0900) +latest-prerequisite time: 2024-06-03 09:52:51 +0900 ................................ -### Update TSV for rhea-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for rhea-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/rhea-ec.tsv is newer than config/rhea-ec/config.yaml -# File output/tsv/rhea-ec.tsv is newer than input/rhea/download.lock -# => Preserving output/tsv/rhea-ec.tsv +# File output/tsv/rhea-ec.tsv is older than input/rhea/download.lock +## Update config/rhea-ec/config.yaml => output/tsv/rhea-ec.tsv +< 2024-06-03T09:52:51 rhea-ec +togoid-config config/rhea-ec update +# Success: output/tsv/rhea-ec.tsv is updated +> 2024-06-03T09:52:51 rhea-ec Rule for TSV (output/tsv/rhea-ec.tsv) ------------------------------ Investigating output/tsv/rhea-ec.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 09:38:01 +0900 +timestamp: 2024-06-03 09:52:51 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--prepare:rhea (2024-06-03 09:52:51 +0900) +latest-prerequisite time: 2024-06-03 09:52:51 +0900 ................................ -### Update TSV for rhea-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for rhea-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/rhea-go.tsv is newer than config/rhea-go/config.yaml -# File output/tsv/rhea-go.tsv is newer than input/rhea/download.lock -# => Preserving output/tsv/rhea-go.tsv +# File output/tsv/rhea-go.tsv is older than input/rhea/download.lock +## Update config/rhea-go/config.yaml => output/tsv/rhea-go.tsv +< 2024-06-03T09:52:51 rhea-go +togoid-config config/rhea-go update +# Success: output/tsv/rhea-go.tsv is updated +> 2024-06-03T09:52:52 rhea-go Rule for TSV (output/tsv/rhea-go.tsv) ------------------------------ Investigating output/tsv/rhea-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 09:38:02 +0900 +timestamp: 2024-06-03 09:52:52 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--prepare:rhea (2024-06-03 09:52:52 +0900) +latest-prerequisite time: 2024-06-03 09:52:52 +0900 ................................ -### Update TSV for rhea-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for rhea-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/rhea-pubmed.tsv is newer than config/rhea-pubmed/config.yaml -# File output/tsv/rhea-pubmed.tsv is newer than input/rhea/download.lock -# => Preserving output/tsv/rhea-pubmed.tsv +# File output/tsv/rhea-pubmed.tsv is older than input/rhea/download.lock +## Update config/rhea-pubmed/config.yaml => output/tsv/rhea-pubmed.tsv +< 2024-06-03T09:52:52 rhea-pubmed +togoid-config config/rhea-pubmed update +# Success: output/tsv/rhea-pubmed.tsv is updated +> 2024-06-03T09:52:52 rhea-pubmed Rule for TSV (output/tsv/rhea-pubmed.tsv) ------------------------------ Investigating output/tsv/rhea-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 09:38:02 +0900 +timestamp: 2024-06-03 09:52:52 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--prepare:rhea (2024-06-03 09:52:52 +0900) +latest-prerequisite time: 2024-06-03 09:52:52 +0900 ................................ -### Update TSV for rhea-reactome_reaction if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for rhea-reactome_reaction if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/rhea-reactome_reaction.tsv is newer than config/rhea-reactome_reaction/config.yaml -# File output/tsv/rhea-reactome_reaction.tsv is newer than input/rhea/download.lock -# => Preserving output/tsv/rhea-reactome_reaction.tsv +# File output/tsv/rhea-reactome_reaction.tsv is older than input/rhea/download.lock +## Update config/rhea-reactome_reaction/config.yaml => output/tsv/rhea-reactome_reaction.tsv +< 2024-06-03T09:52:52 rhea-reactome_reaction +togoid-config config/rhea-reactome_reaction update +# Success: output/tsv/rhea-reactome_reaction.tsv is updated +> 2024-06-03T09:52:53 rhea-reactome_reaction Rule for TSV (output/tsv/rhea-reactome_reaction.tsv) ------------------------------ Investigating output/tsv/rhea-reactome_reaction.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 09:38:03 +0900 +timestamp: 2024-06-03 09:52:53 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--prepare:rhea (2024-06-03 09:52:53 +0900) +latest-prerequisite time: 2024-06-03 09:52:53 +0900 ................................ -### Update TSV for rhea-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for rhea-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/rhea-uniprot.tsv is newer than config/rhea-uniprot/config.yaml -# File output/tsv/rhea-uniprot.tsv is newer than input/rhea/download.lock -# => Preserving output/tsv/rhea-uniprot.tsv +# File output/tsv/rhea-uniprot.tsv is older than input/rhea/download.lock +## Update config/rhea-uniprot/config.yaml => output/tsv/rhea-uniprot.tsv +< 2024-06-03T09:52:53 rhea-uniprot +togoid-config config/rhea-uniprot update +# Success: output/tsv/rhea-uniprot.tsv is updated +> 2024-06-03T09:53:30 rhea-uniprot Rule for TSV (output/tsv/rhea-uniprot.tsv) ------------------------------ Investigating output/tsv/rhea-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 09:38:56 +0900 +timestamp: 2024-06-03 09:53:30 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--prepare:rhea (2024-06-03 09:53:30 +0900) +latest-prerequisite time: 2024-06-03 09:53:30 +0900 ................................ ### Update TSV for sra_accession-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-bioproject.tsv is newer than config/sra_accession-bioproject/config.yaml # File output/tsv/sra_accession-bioproject.tsv has no timestamp file -# File output/tsv/sra_accession-bioproject.tsv is created 7.429553451659097 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-bioproject.tsv is created 8.747644147751656 days ago (will be updated when >5 days) ## Update config/sra_accession-bioproject/config.yaml => output/tsv/sra_accession-bioproject.tsv -< 2024-05-25T15:54:54 sra_accession-bioproject +< 2024-06-03T09:53:30 sra_accession-bioproject togoid-config config/sra_accession-bioproject update # Success: output/tsv/sra_accession-bioproject.tsv is updated -> 2024-05-25T15:56:53 sra_accession-bioproject +> 2024-06-03T09:55:12 sra_accession-bioproject Rule for TSV (output/tsv/sra_accession-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_accession-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 15:56:53 +0900 +timestamp: 2024-06-03 09:55:12 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 15:56:53 +0900) -latest-prerequisite time: 2024-05-25 15:56:53 +0900 +--prepare:sra (2024-06-03 09:55:12 +0900) +latest-prerequisite time: 2024-06-03 09:55:12 +0900 ................................ ### Update TSV for sra_accession-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-biosample.tsv is newer than config/sra_accession-biosample/config.yaml # File output/tsv/sra_accession-biosample.tsv has no timestamp file -# File output/tsv/sra_accession-biosample.tsv is created 7.425444202819525 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-biosample.tsv is created 8.743299237415417 days ago (will be updated when >5 days) ## Update config/sra_accession-biosample/config.yaml => output/tsv/sra_accession-biosample.tsv -< 2024-05-25T15:56:53 sra_accession-biosample +< 2024-06-03T09:55:12 sra_accession-biosample togoid-config config/sra_accession-biosample update # Success: output/tsv/sra_accession-biosample.tsv is updated -> 2024-05-25T16:04:51 sra_accession-biosample +> 2024-06-03T10:02:57 sra_accession-biosample Rule for TSV (output/tsv/sra_accession-biosample.tsv) ------------------------------ Investigating output/tsv/sra_accession-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:04:51 +0900 +timestamp: 2024-06-03 10:02:57 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:04:51 +0900) -latest-prerequisite time: 2024-05-25 16:04:51 +0900 +--prepare:sra (2024-06-03 10:02:57 +0900) +latest-prerequisite time: 2024-06-03 10:02:57 +0900 ................................ ### Update TSV for sra_accession-sra_analysis if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_analysis.tsv is newer than config/sra_accession-sra_analysis/config.yaml # File output/tsv/sra_accession-sra_analysis.tsv has no timestamp file -# File output/tsv/sra_accession-sra_analysis.tsv is created 7.430227869363229 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_analysis.tsv is created 8.74793257485118 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_analysis/config.yaml => output/tsv/sra_accession-sra_analysis.tsv -< 2024-05-25T16:04:51 sra_accession-sra_analysis +< 2024-06-03T10:02:57 sra_accession-sra_analysis togoid-config config/sra_accession-sra_analysis update # Success: output/tsv/sra_accession-sra_analysis.tsv is updated -> 2024-05-25T16:05:55 sra_accession-sra_analysis +> 2024-06-03T10:04:01 sra_accession-sra_analysis Rule for TSV (output/tsv/sra_accession-sra_analysis.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_analysis.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:05:55 +0900 +timestamp: 2024-06-03 10:04:01 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:05:55 +0900) -latest-prerequisite time: 2024-05-25 16:05:55 +0900 +--prepare:sra (2024-06-03 10:04:01 +0900) +latest-prerequisite time: 2024-06-03 10:04:01 +0900 ................................ ### Update TSV for sra_accession-sra_experiment if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_experiment.tsv is newer than config/sra_accession-sra_experiment/config.yaml # File output/tsv/sra_accession-sra_experiment.tsv has no timestamp file -# File output/tsv/sra_accession-sra_experiment.tsv is created 7.4264561757935414 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_experiment.tsv is created 8.744188172317374 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_experiment/config.yaml => output/tsv/sra_accession-sra_experiment.tsv -< 2024-05-25T16:05:55 sra_accession-sra_experiment +< 2024-06-03T10:04:01 sra_accession-sra_experiment togoid-config config/sra_accession-sra_experiment update # Success: output/tsv/sra_accession-sra_experiment.tsv is updated -> 2024-05-25T16:12:23 sra_accession-sra_experiment +> 2024-06-03T10:10:29 sra_accession-sra_experiment Rule for TSV (output/tsv/sra_accession-sra_experiment.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_experiment.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:12:23 +0900 +timestamp: 2024-06-03 10:10:29 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:12:23 +0900) -latest-prerequisite time: 2024-05-25 16:12:23 +0900 +--prepare:sra (2024-06-03 10:10:29 +0900) +latest-prerequisite time: 2024-06-03 10:10:29 +0900 ................................ ### Update TSV for sra_accession-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_project.tsv is newer than config/sra_accession-sra_project/config.yaml # File output/tsv/sra_accession-sra_project.tsv has no timestamp file -# File output/tsv/sra_accession-sra_project.tsv is created 7.430209389616596 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_project.tsv is created 8.747942470806713 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_project/config.yaml => output/tsv/sra_accession-sra_project.tsv -< 2024-05-25T16:12:23 sra_accession-sra_project +< 2024-06-03T10:10:29 sra_accession-sra_project togoid-config config/sra_accession-sra_project update # Success: output/tsv/sra_accession-sra_project.tsv is updated -> 2024-05-25T16:13:27 sra_accession-sra_project +> 2024-06-03T10:11:34 sra_accession-sra_project Rule for TSV (output/tsv/sra_accession-sra_project.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:13:27 +0900 +timestamp: 2024-06-03 10:11:34 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:13:27 +0900) -latest-prerequisite time: 2024-05-25 16:13:27 +0900 +--prepare:sra (2024-06-03 10:11:34 +0900) +latest-prerequisite time: 2024-06-03 10:11:34 +0900 ................................ ### Update TSV for sra_accession-sra_run if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_run.tsv is newer than config/sra_accession-sra_run/config.yaml # File output/tsv/sra_accession-sra_run.tsv has no timestamp file -# File output/tsv/sra_accession-sra_run.tsv is created 7.425986897570312 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_run.tsv is created 8.743527184911747 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_run/config.yaml => output/tsv/sra_accession-sra_run.tsv -< 2024-05-25T16:13:27 sra_accession-sra_run +< 2024-06-03T10:11:34 sra_accession-sra_run togoid-config config/sra_accession-sra_run update # Success: output/tsv/sra_accession-sra_run.tsv is updated -> 2024-05-25T16:20:53 sra_accession-sra_run +> 2024-06-03T10:18:45 sra_accession-sra_run Rule for TSV (output/tsv/sra_accession-sra_run.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_run.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:20:53 +0900 +timestamp: 2024-06-03 10:18:45 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:20:53 +0900) -latest-prerequisite time: 2024-05-25 16:20:53 +0900 +--prepare:sra (2024-06-03 10:18:45 +0900) +latest-prerequisite time: 2024-06-03 10:18:45 +0900 ................................ ### Update TSV for sra_accession-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_sample.tsv is newer than config/sra_accession-sra_sample/config.yaml # File output/tsv/sra_accession-sra_sample.tsv has no timestamp file -# File output/tsv/sra_accession-sra_sample.tsv is created 7.426915403289757 days ago (will be updated when >5 days) +# File output/tsv/sra_accession-sra_sample.tsv is created 8.744165533902605 days ago (will be updated when >5 days) ## Update config/sra_accession-sra_sample/config.yaml => output/tsv/sra_accession-sra_sample.tsv -< 2024-05-25T16:20:53 sra_accession-sra_sample +< 2024-06-03T10:18:45 sra_accession-sra_sample togoid-config config/sra_accession-sra_sample update # Success: output/tsv/sra_accession-sra_sample.tsv is updated -> 2024-05-25T16:27:09 sra_accession-sra_sample +> 2024-06-03T10:24:51 sra_accession-sra_sample Rule for TSV (output/tsv/sra_accession-sra_sample.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:27:09 +0900 +timestamp: 2024-06-03 10:24:51 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:27:09 +0900) -latest-prerequisite time: 2024-05-25 16:27:09 +0900 +--prepare:sra (2024-06-03 10:24:51 +0900) +latest-prerequisite time: 2024-06-03 10:24:51 +0900 ................................ ### Update TSV for sra_experiment-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-bioproject.tsv is newer than config/sra_experiment-bioproject/config.yaml # File output/tsv/sra_experiment-bioproject.tsv has no timestamp file -# File output/tsv/sra_experiment-bioproject.tsv is created 7.428972947903576 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-bioproject.tsv is created 8.74598533158074 days ago (will be updated when >5 days) ## Update config/sra_experiment-bioproject/config.yaml => output/tsv/sra_experiment-bioproject.tsv -< 2024-05-25T16:27:09 sra_experiment-bioproject +< 2024-06-03T10:24:51 sra_experiment-bioproject togoid-config config/sra_experiment-bioproject update # Success: output/tsv/sra_experiment-bioproject.tsv is updated -> 2024-05-25T16:30:38 sra_experiment-bioproject +> 2024-06-03T10:28:12 sra_experiment-bioproject Rule for TSV (output/tsv/sra_experiment-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_experiment-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:30:38 +0900 +timestamp: 2024-06-03 10:28:11 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:30:38 +0900) -latest-prerequisite time: 2024-05-25 16:30:38 +0900 +--prepare:sra (2024-06-03 10:28:12 +0900) +latest-prerequisite time: 2024-06-03 10:28:12 +0900 ................................ ### Update TSV for sra_experiment-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-biosample.tsv is newer than config/sra_experiment-biosample/config.yaml # File output/tsv/sra_experiment-biosample.tsv has no timestamp file -# File output/tsv/sra_experiment-biosample.tsv is created 7.429145825519803 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-biosample.tsv is created 8.745927409407338 days ago (will be updated when >5 days) ## Update config/sra_experiment-biosample/config.yaml => output/tsv/sra_experiment-biosample.tsv -< 2024-05-25T16:30:38 sra_experiment-biosample +< 2024-06-03T10:28:12 sra_experiment-biosample togoid-config config/sra_experiment-biosample update # Success: output/tsv/sra_experiment-biosample.tsv is updated -> 2024-05-25T16:34:03 sra_experiment-biosample +> 2024-06-03T10:31:27 sra_experiment-biosample Rule for TSV (output/tsv/sra_experiment-biosample.tsv) ------------------------------ Investigating output/tsv/sra_experiment-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:34:03 +0900 +timestamp: 2024-06-03 10:31:27 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:34:03 +0900) -latest-prerequisite time: 2024-05-25 16:34:03 +0900 +--prepare:sra (2024-06-03 10:31:27 +0900) +latest-prerequisite time: 2024-06-03 10:31:27 +0900 ................................ ### Update TSV for sra_experiment-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-sra_project.tsv is newer than config/sra_experiment-sra_project/config.yaml # File output/tsv/sra_experiment-sra_project.tsv has no timestamp file -# File output/tsv/sra_experiment-sra_project.tsv is created 7.429622933228461 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-sra_project.tsv is created 8.746121331529247 days ago (will be updated when >5 days) ## Update config/sra_experiment-sra_project/config.yaml => output/tsv/sra_experiment-sra_project.tsv -< 2024-05-25T16:34:03 sra_experiment-sra_project +< 2024-06-03T10:31:27 sra_experiment-sra_project togoid-config config/sra_experiment-sra_project update # Success: output/tsv/sra_experiment-sra_project.tsv is updated -> 2024-05-25T16:37:02 sra_experiment-sra_project +> 2024-06-03T10:34:12 sra_experiment-sra_project Rule for TSV (output/tsv/sra_experiment-sra_project.tsv) ------------------------------ Investigating output/tsv/sra_experiment-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:37:02 +0900 +timestamp: 2024-06-03 10:34:12 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:37:02 +0900) -latest-prerequisite time: 2024-05-25 16:37:02 +0900 +--prepare:sra (2024-06-03 10:34:12 +0900) +latest-prerequisite time: 2024-06-03 10:34:12 +0900 ................................ ### Update TSV for sra_experiment-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-sra_sample.tsv is newer than config/sra_experiment-sra_sample/config.yaml # File output/tsv/sra_experiment-sra_sample.tsv has no timestamp file -# File output/tsv/sra_experiment-sra_sample.tsv is created 7.429854994148379 days ago (will be updated when >5 days) +# File output/tsv/sra_experiment-sra_sample.tsv is created 8.746051681415382 days ago (will be updated when >5 days) ## Update config/sra_experiment-sra_sample/config.yaml => output/tsv/sra_experiment-sra_sample.tsv -< 2024-05-25T16:37:02 sra_experiment-sra_sample +< 2024-06-03T10:34:12 sra_experiment-sra_sample togoid-config config/sra_experiment-sra_sample update # Success: output/tsv/sra_experiment-sra_sample.tsv is updated -> 2024-05-25T16:39:53 sra_experiment-sra_sample +> 2024-06-03T10:36:52 sra_experiment-sra_sample Rule for TSV (output/tsv/sra_experiment-sra_sample.tsv) ------------------------------ Investigating output/tsv/sra_experiment-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:39:53 +0900 +timestamp: 2024-06-03 10:36:52 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:39:53 +0900) -latest-prerequisite time: 2024-05-25 16:39:53 +0900 +--prepare:sra (2024-06-03 10:36:52 +0900) +latest-prerequisite time: 2024-06-03 10:36:52 +0900 ................................ ### Update TSV for sra_project-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_project-bioproject.tsv is newer than config/sra_project-bioproject/config.yaml # File output/tsv/sra_project-bioproject.tsv has no timestamp file -# File output/tsv/sra_project-bioproject.tsv is created 7.4310700722442355 days ago (will be updated when >5 days) +# File output/tsv/sra_project-bioproject.tsv is created 8.747164379849432 days ago (will be updated when >5 days) ## Update config/sra_project-bioproject/config.yaml => output/tsv/sra_project-bioproject.tsv -< 2024-05-25T16:39:53 sra_project-bioproject +< 2024-06-03T10:36:52 sra_project-bioproject togoid-config config/sra_project-bioproject update # Success: output/tsv/sra_project-bioproject.tsv is updated -> 2024-05-25T16:40:57 sra_project-bioproject +> 2024-06-03T10:37:57 sra_project-bioproject Rule for TSV (output/tsv/sra_project-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_project-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:40:57 +0900 +timestamp: 2024-06-03 10:37:57 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:40:57 +0900) -latest-prerequisite time: 2024-05-25 16:40:57 +0900 +--prepare:sra (2024-06-03 10:37:57 +0900) +latest-prerequisite time: 2024-06-03 10:37:57 +0900 ................................ ### Update TSV for sra_run-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-bioproject.tsv is newer than config/sra_run-bioproject/config.yaml # File output/tsv/sra_run-bioproject.tsv has no timestamp file -# File output/tsv/sra_run-bioproject.tsv is created 7.42920488573669 days ago (will be updated when >5 days) +# File output/tsv/sra_run-bioproject.tsv is created 8.74529262772669 days ago (will be updated when >5 days) ## Update config/sra_run-bioproject/config.yaml => output/tsv/sra_run-bioproject.tsv -< 2024-05-25T16:40:57 sra_run-bioproject +< 2024-06-03T10:37:57 sra_run-bioproject togoid-config config/sra_run-bioproject update # Success: output/tsv/sra_run-bioproject.tsv is updated -> 2024-05-25T16:44:43 sra_run-bioproject +> 2024-06-03T10:41:48 sra_run-bioproject Rule for TSV (output/tsv/sra_run-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_run-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:44:43 +0900 +timestamp: 2024-06-03 10:41:48 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:44:43 +0900) -latest-prerequisite time: 2024-05-25 16:44:43 +0900 +--prepare:sra (2024-06-03 10:41:48 +0900) +latest-prerequisite time: 2024-06-03 10:41:48 +0900 ................................ ### Update TSV for sra_run-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-biosample.tsv is newer than config/sra_run-biosample/config.yaml # File output/tsv/sra_run-biosample.tsv has no timestamp file -# File output/tsv/sra_run-biosample.tsv is created 7.429294711515822 days ago (will be updated when >5 days) +# File output/tsv/sra_run-biosample.tsv is created 8.745218818527048 days ago (will be updated when >5 days) ## Update config/sra_run-biosample/config.yaml => output/tsv/sra_run-biosample.tsv -< 2024-05-25T16:44:43 sra_run-biosample +< 2024-06-03T10:41:48 sra_run-biosample togoid-config config/sra_run-biosample update # Success: output/tsv/sra_run-biosample.tsv is updated -> 2024-05-25T16:48:41 sra_run-biosample +> 2024-06-03T10:45:29 sra_run-biosample Rule for TSV (output/tsv/sra_run-biosample.tsv) ------------------------------ Investigating output/tsv/sra_run-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:48:41 +0900 +timestamp: 2024-06-03 10:45:29 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:48:41 +0900) -latest-prerequisite time: 2024-05-25 16:48:41 +0900 +--prepare:sra (2024-06-03 10:45:29 +0900) +latest-prerequisite time: 2024-06-03 10:45:29 +0900 ................................ ### Update TSV for sra_run-sra_experiment if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_experiment.tsv is newer than config/sra_run-sra_experiment/config.yaml # File output/tsv/sra_run-sra_experiment.tsv has no timestamp file -# File output/tsv/sra_run-sra_experiment.tsv is created 7.430082640762673 days ago (will be updated when >5 days) +# File output/tsv/sra_run-sra_experiment.tsv is created 8.745692364192397 days ago (will be updated when >5 days) ## Update config/sra_run-sra_experiment/config.yaml => output/tsv/sra_run-sra_experiment.tsv -< 2024-05-25T16:48:41 sra_run-sra_experiment +< 2024-06-03T10:45:29 sra_run-sra_experiment togoid-config config/sra_run-sra_experiment update # Success: output/tsv/sra_run-sra_experiment.tsv is updated -> 2024-05-25T16:51:41 sra_run-sra_experiment +> 2024-06-03T10:48:21 sra_run-sra_experiment Rule for TSV (output/tsv/sra_run-sra_experiment.tsv) ------------------------------ Investigating output/tsv/sra_run-sra_experiment.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:51:41 +0900 +timestamp: 2024-06-03 10:48:21 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:51:41 +0900) -latest-prerequisite time: 2024-05-25 16:51:41 +0900 +--prepare:sra (2024-06-03 10:48:21 +0900) +latest-prerequisite time: 2024-06-03 10:48:21 +0900 ................................ ### Update TSV for sra_run-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_project.tsv is newer than config/sra_run-sra_project/config.yaml # File output/tsv/sra_run-sra_project.tsv has no timestamp file -# File output/tsv/sra_run-sra_project.tsv is created 7.430090904489618 days ago (will be updated when >5 days) +# File output/tsv/sra_run-sra_project.tsv is created 8.745510270874815 days ago (will be updated when >5 days) ## Update config/sra_run-sra_project/config.yaml => output/tsv/sra_run-sra_project.tsv -< 2024-05-25T16:51:41 sra_run-sra_project +< 2024-06-03T10:48:21 sra_run-sra_project togoid-config config/sra_run-sra_project update # Success: output/tsv/sra_run-sra_project.tsv is updated -> 2024-05-25T16:54:49 sra_run-sra_project +> 2024-06-03T10:51:22 sra_run-sra_project Rule for TSV (output/tsv/sra_run-sra_project.tsv) ------------------------------ Investigating output/tsv/sra_run-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:54:49 +0900 +timestamp: 2024-06-03 10:51:22 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:54:49 +0900) -latest-prerequisite time: 2024-05-25 16:54:49 +0900 +--prepare:sra (2024-06-03 10:51:22 +0900) +latest-prerequisite time: 2024-06-03 10:51:22 +0900 ................................ ### Update TSV for sra_run-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_sample.tsv is newer than config/sra_run-sra_sample/config.yaml # File output/tsv/sra_run-sra_sample.tsv has no timestamp file -# File output/tsv/sra_run-sra_sample.tsv is created 7.430237682717557 days ago (will be updated when >5 days) +# File output/tsv/sra_run-sra_sample.tsv is created 8.745341951548403 days ago (will be updated when >5 days) ## Update config/sra_run-sra_sample/config.yaml => output/tsv/sra_run-sra_sample.tsv -< 2024-05-25T16:54:49 sra_run-sra_sample +< 2024-06-03T10:51:22 sra_run-sra_sample togoid-config config/sra_run-sra_sample update # Success: output/tsv/sra_run-sra_sample.tsv is updated -> 2024-05-25T16:58:05 sra_run-sra_sample +> 2024-06-03T10:54:19 sra_run-sra_sample Rule for TSV (output/tsv/sra_run-sra_sample.tsv) ------------------------------ Investigating output/tsv/sra_run-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 16:58:05 +0900 +timestamp: 2024-06-03 10:54:19 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 16:58:05 +0900) -latest-prerequisite time: 2024-05-25 16:58:05 +0900 +--prepare:sra (2024-06-03 10:54:19 +0900) +latest-prerequisite time: 2024-06-03 10:54:19 +0900 ................................ ### Update TSV for sra_sample-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_sample-biosample.tsv is newer than config/sra_sample-biosample/config.yaml # File output/tsv/sra_sample-biosample.tsv has no timestamp file -# File output/tsv/sra_sample-biosample.tsv is created 7.430454040446308 days ago (will be updated when >5 days) +# File output/tsv/sra_sample-biosample.tsv is created 8.745199359438693 days ago (will be updated when >5 days) ## Update config/sra_sample-biosample/config.yaml => output/tsv/sra_sample-biosample.tsv -< 2024-05-25T16:58:05 sra_sample-biosample +< 2024-06-03T10:54:19 sra_sample-biosample togoid-config config/sra_sample-biosample update # Success: output/tsv/sra_sample-biosample.tsv is updated -> 2024-05-25T17:01:13 sra_sample-biosample +> 2024-06-03T10:57:16 sra_sample-biosample Rule for TSV (output/tsv/sra_sample-biosample.tsv) ------------------------------ Investigating output/tsv/sra_sample-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:01:13 +0900 +timestamp: 2024-06-03 10:57:16 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-05-25 17:01:13 +0900) -latest-prerequisite time: 2024-05-25 17:01:13 +0900 +--prepare:sra (2024-06-03 10:57:16 +0900) +latest-prerequisite time: 2024-06-03 10:57:16 +0900 ................................ ### Update TSV for swisslipids-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-chebi.tsv is newer than config/swisslipids-chebi/config.yaml # File output/tsv/swisslipids-chebi.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-chebi/config.yaml => output/tsv/swisslipids-chebi.tsv -< 2024-05-25T17:01:13 swisslipids-chebi +< 2024-06-03T10:57:16 swisslipids-chebi togoid-config config/swisslipids-chebi update # Success: output/tsv/swisslipids-chebi.tsv is updated -> 2024-05-25T17:01:27 swisslipids-chebi +> 2024-06-03T10:57:31 swisslipids-chebi Rule for TSV (output/tsv/swisslipids-chebi.tsv) ------------------------------ Investigating output/tsv/swisslipids-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:01:27 +0900 +timestamp: 2024-06-03 10:57:31 +0900 pre-requisites: --output/tsv/ () ---prepare:swisslipids (2024-05-25 17:01:27 +0900) -latest-prerequisite time: 2024-05-25 17:01:27 +0900 +--prepare:swisslipids (2024-06-03 10:57:31 +0900) +latest-prerequisite time: 2024-06-03 10:57:31 +0900 ................................ ### Update TSV for swisslipids-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-hmdb.tsv is newer than config/swisslipids-hmdb/config.yaml # File output/tsv/swisslipids-hmdb.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-hmdb/config.yaml => output/tsv/swisslipids-hmdb.tsv -< 2024-05-25T17:01:27 swisslipids-hmdb +< 2024-06-03T10:57:31 swisslipids-hmdb togoid-config config/swisslipids-hmdb update # Success: output/tsv/swisslipids-hmdb.tsv is updated -> 2024-05-25T17:01:41 swisslipids-hmdb +> 2024-06-03T10:57:45 swisslipids-hmdb Rule for TSV (output/tsv/swisslipids-hmdb.tsv) ------------------------------ Investigating output/tsv/swisslipids-hmdb.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:01:41 +0900 +timestamp: 2024-06-03 10:57:45 +0900 pre-requisites: --output/tsv/ () ---prepare:swisslipids (2024-05-25 17:01:41 +0900) -latest-prerequisite time: 2024-05-25 17:01:41 +0900 +--prepare:swisslipids (2024-06-03 10:57:45 +0900) +latest-prerequisite time: 2024-06-03 10:57:45 +0900 ................................ ### Update TSV for swisslipids-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-inchi_key.tsv is newer than config/swisslipids-inchi_key/config.yaml # File output/tsv/swisslipids-inchi_key.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-inchi_key/config.yaml => output/tsv/swisslipids-inchi_key.tsv -< 2024-05-25T17:01:41 swisslipids-inchi_key +< 2024-06-03T10:57:45 swisslipids-inchi_key togoid-config config/swisslipids-inchi_key update # Success: output/tsv/swisslipids-inchi_key.tsv is updated -> 2024-05-25T17:01:54 swisslipids-inchi_key +> 2024-06-03T10:57:57 swisslipids-inchi_key Rule for TSV (output/tsv/swisslipids-inchi_key.tsv) ------------------------------ Investigating output/tsv/swisslipids-inchi_key.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:01:54 +0900 +timestamp: 2024-06-03 10:57:57 +0900 pre-requisites: --output/tsv/ () ---prepare:swisslipids (2024-05-25 17:01:54 +0900) -latest-prerequisite time: 2024-05-25 17:01:54 +0900 +--prepare:swisslipids (2024-06-03 10:57:57 +0900) +latest-prerequisite time: 2024-06-03 10:57:57 +0900 ................................ ### Update TSV for taxonomy-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/taxonomy-pubmed.tsv is newer than config/taxonomy-pubmed/config.yaml # File output/tsv/taxonomy-pubmed.tsv is older than input/taxonomy/download.lock ## Update config/taxonomy-pubmed/config.yaml => output/tsv/taxonomy-pubmed.tsv -< 2024-05-25T17:01:54 taxonomy-pubmed +< 2024-06-03T10:57:57 taxonomy-pubmed togoid-config config/taxonomy-pubmed update awk: cmd. line:1: warning: escape sequence `\|' treated as plain `|' # Success: output/tsv/taxonomy-pubmed.tsv is updated -> 2024-05-25T17:01:55 taxonomy-pubmed +> 2024-06-03T10:57:58 taxonomy-pubmed Rule for TSV (output/tsv/taxonomy-pubmed.tsv) ------------------------------ Investigating output/tsv/taxonomy-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:01:55 +0900 +timestamp: 2024-06-03 10:57:58 +0900 pre-requisites: --output/tsv/ () ---prepare:taxonomy (2024-05-25 17:01:55 +0900) -latest-prerequisite time: 2024-05-25 17:01:55 +0900 +--prepare:taxonomy (2024-06-03 10:57:58 +0900) +latest-prerequisite time: 2024-06-03 10:57:58 +0900 ................................ ### Update TSV for togovar-clinvar if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-clinvar.tsv is newer than config/togovar-clinvar/config.yaml # File output/tsv/togovar-clinvar.tsv has no timestamp file -# File output/tsv/togovar-clinvar.tsv is created 7.431712769841459 days ago (will be updated when >5 days) +# File output/tsv/togovar-clinvar.tsv is created 8.745940772109456 days ago (will be updated when >5 days) ## Update config/togovar-clinvar/config.yaml => output/tsv/togovar-clinvar.tsv -< 2024-05-25T17:01:55 togovar-clinvar +< 2024-06-03T10:57:58 togovar-clinvar togoid-config config/togovar-clinvar update # Success: output/tsv/togovar-clinvar.tsv is updated -> 2024-05-25T17:03:49 togovar-clinvar +> 2024-06-03T10:59:58 togovar-clinvar Rule for TSV (output/tsv/togovar-clinvar.tsv) ------------------------------ Investigating output/tsv/togovar-clinvar.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 17:03:49 +0900 +timestamp: 2024-06-03 10:59:58 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for togovar-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-dbsnp.tsv is newer than config/togovar-dbsnp/config.yaml # File output/tsv/togovar-dbsnp.tsv has no timestamp file -# File output/tsv/togovar-dbsnp.tsv is created 7.4326451843948735 days ago (will be updated when >5 days) +# File output/tsv/togovar-dbsnp.tsv is created 8.746943565536297 days ago (will be updated when >5 days) ## Update config/togovar-dbsnp/config.yaml => output/tsv/togovar-dbsnp.tsv -< 2024-05-25T17:03:49 togovar-dbsnp +< 2024-06-03T10:59:58 togovar-dbsnp togoid-config config/togovar-dbsnp update # Success: output/tsv/togovar-dbsnp.tsv is updated -> 2024-05-25T17:04:22 togovar-dbsnp +> 2024-06-03T11:00:32 togovar-dbsnp Rule for TSV (output/tsv/togovar-dbsnp.tsv) ------------------------------ Investigating output/tsv/togovar-dbsnp.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 17:04:22 +0900 +timestamp: 2024-06-03 11:00:32 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for togovar-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ensembl_gene.tsv is newer than config/togovar-ensembl_gene/config.yaml # File output/tsv/togovar-ensembl_gene.tsv has no timestamp file -# File output/tsv/togovar-ensembl_gene.tsv is created 7.432616791849895 days ago (will be updated when >5 days) +# File output/tsv/togovar-ensembl_gene.tsv is created 8.746906676086436 days ago (will be updated when >5 days) ## Update config/togovar-ensembl_gene/config.yaml => output/tsv/togovar-ensembl_gene.tsv -< 2024-05-25T17:04:22 togovar-ensembl_gene +< 2024-06-03T11:00:32 togovar-ensembl_gene togoid-config config/togovar-ensembl_gene update # Success: output/tsv/togovar-ensembl_gene.tsv is updated -> 2024-05-25T17:05:00 togovar-ensembl_gene +> 2024-06-03T11:01:09 togovar-ensembl_gene Rule for TSV (output/tsv/togovar-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/togovar-ensembl_gene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 17:05:00 +0900 +timestamp: 2024-06-03 11:01:09 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for togovar-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ensembl_transcript.tsv is newer than config/togovar-ensembl_transcript/config.yaml # File output/tsv/togovar-ensembl_transcript.tsv has no timestamp file -# File output/tsv/togovar-ensembl_transcript.tsv is created 7.431171046648218 days ago (will be updated when >5 days) +# File output/tsv/togovar-ensembl_transcript.tsv is created 8.745538160535556 days ago (will be updated when >5 days) ## Update config/togovar-ensembl_transcript/config.yaml => output/tsv/togovar-ensembl_transcript.tsv -< 2024-05-25T17:05:00 togovar-ensembl_transcript +< 2024-06-03T11:01:09 togovar-ensembl_transcript togoid-config config/togovar-ensembl_transcript update # Success: output/tsv/togovar-ensembl_transcript.tsv is updated -> 2024-05-25T17:07:35 togovar-ensembl_transcript +> 2024-06-03T11:03:36 togovar-ensembl_transcript Rule for TSV (output/tsv/togovar-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/togovar-ensembl_transcript.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 17:07:35 +0900 +timestamp: 2024-06-03 11:03:36 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for togovar-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-hgnc.tsv is newer than config/togovar-hgnc/config.yaml # File output/tsv/togovar-hgnc.tsv has no timestamp file -# File output/tsv/togovar-hgnc.tsv is created 7.4326964436040965 days ago (will be updated when >5 days) +# File output/tsv/togovar-hgnc.tsv is created 8.746967983783957 days ago (will be updated when >5 days) ## Update config/togovar-hgnc/config.yaml => output/tsv/togovar-hgnc.tsv -< 2024-05-25T17:07:35 togovar-hgnc +< 2024-06-03T11:03:36 togovar-hgnc togoid-config config/togovar-hgnc update # Success: output/tsv/togovar-hgnc.tsv is updated -> 2024-05-25T17:07:58 togovar-hgnc +> 2024-06-03T11:03:59 togovar-hgnc Rule for TSV (output/tsv/togovar-hgnc.tsv) ------------------------------ Investigating output/tsv/togovar-hgnc.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 17:07:58 +0900 +timestamp: 2024-06-03 11:03:59 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for togovar-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ncbigene.tsv is newer than config/togovar-ncbigene/config.yaml # File output/tsv/togovar-ncbigene.tsv has no timestamp file -# File output/tsv/togovar-ncbigene.tsv is created 7.432672999521759 days ago (will be updated when >5 days) +# File output/tsv/togovar-ncbigene.tsv is created 8.746964292980845 days ago (will be updated when >5 days) ## Update config/togovar-ncbigene/config.yaml => output/tsv/togovar-ncbigene.tsv -< 2024-05-25T17:07:58 togovar-ncbigene +< 2024-06-03T11:03:59 togovar-ncbigene togoid-config config/togovar-ncbigene update # Success: output/tsv/togovar-ncbigene.tsv is updated -> 2024-05-25T17:08:22 togovar-ncbigene +> 2024-06-03T11:04:24 togovar-ncbigene Rule for TSV (output/tsv/togovar-ncbigene.tsv) ------------------------------ Investigating output/tsv/togovar-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 17:08:22 +0900 +timestamp: 2024-06-03 11:04:24 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for togovar-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-pubmed.tsv is newer than config/togovar-pubmed/config.yaml # File output/tsv/togovar-pubmed.tsv has no timestamp file -# File output/tsv/togovar-pubmed.tsv is created 7.432935572914491 days ago (will be updated when >5 days) +# File output/tsv/togovar-pubmed.tsv is created 8.747234643284376 days ago (will be updated when >5 days) ## Update config/togovar-pubmed/config.yaml => output/tsv/togovar-pubmed.tsv -< 2024-05-25T17:08:22 togovar-pubmed +< 2024-06-03T11:04:24 togovar-pubmed togoid-config config/togovar-pubmed update # Success: output/tsv/togovar-pubmed.tsv is updated -> 2024-05-25T17:08:23 togovar-pubmed +> 2024-06-03T11:04:24 togovar-pubmed Rule for TSV (output/tsv/togovar-pubmed.tsv) ------------------------------ Investigating output/tsv/togovar-pubmed.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 17:08:23 +0900 +timestamp: 2024-06-03 11:04:24 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for togovar-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-refseq_rna.tsv is newer than config/togovar-refseq_rna/config.yaml # File output/tsv/togovar-refseq_rna.tsv has no timestamp file -# File output/tsv/togovar-refseq_rna.tsv is created 7.4319727028996985 days ago (will be updated when >5 days) +# File output/tsv/togovar-refseq_rna.tsv is created 8.746274745384735 days ago (will be updated when >5 days) ## Update config/togovar-refseq_rna/config.yaml => output/tsv/togovar-refseq_rna.tsv -< 2024-05-25T17:08:23 togovar-refseq_rna +< 2024-06-03T11:04:24 togovar-refseq_rna togoid-config config/togovar-refseq_rna update # Success: output/tsv/togovar-refseq_rna.tsv is updated -> 2024-05-25T17:09:46 togovar-refseq_rna +> 2024-06-03T11:05:49 togovar-refseq_rna Rule for TSV (output/tsv/togovar-refseq_rna.tsv) ------------------------------ Investigating output/tsv/togovar-refseq_rna.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 17:09:46 +0900 +timestamp: 2024-06-03 11:05:49 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for uberon-ncit_tissue if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uberon-ncit_tissue.tsv is newer than config/uberon-ncit_tissue/config.yaml # File output/tsv/uberon-ncit_tissue.tsv has no timestamp file -# File output/tsv/uberon-ncit_tissue.tsv is created 7.432919183076898 days ago (will be updated when >5 days) +# File output/tsv/uberon-ncit_tissue.tsv is created 8.7472341063225 days ago (will be updated when >5 days) ## Update config/uberon-ncit_tissue/config.yaml => output/tsv/uberon-ncit_tissue.tsv -< 2024-05-25T17:09:46 uberon-ncit_tissue +< 2024-06-03T11:05:49 uberon-ncit_tissue togoid-config config/uberon-ncit_tissue update # Success: output/tsv/uberon-ncit_tissue.tsv is updated -> 2024-05-25T17:09:48 uberon-ncit_tissue +> 2024-06-03T11:05:51 uberon-ncit_tissue Rule for TSV (output/tsv/uberon-ncit_tissue.tsv) ------------------------------ Investigating output/tsv/uberon-ncit_tissue.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 17:09:48 +0900 +timestamp: 2024-06-03 11:05:51 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ -### Update TSV for uniprot-chembl_target if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-chembl_target if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-chembl_target.tsv is newer than config/uniprot-chembl_target/config.yaml -# File output/tsv/uniprot-chembl_target.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-chembl_target.tsv +# File output/tsv/uniprot-chembl_target.tsv is older than input/uniprot/download.lock +## Update config/uniprot-chembl_target/config.yaml => output/tsv/uniprot-chembl_target.tsv +< 2024-06-03T11:05:51 uniprot-chembl_target +togoid-config config/uniprot-chembl_target update +# Success: output/tsv/uniprot-chembl_target.tsv is updated +> 2024-06-03T11:43:22 uniprot-chembl_target Rule for TSV (output/tsv/uniprot-chembl_target.tsv) ------------------------------ Investigating output/tsv/uniprot-chembl_target.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 11:28:49 +0900 +timestamp: 2024-06-03 11:43:22 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:48 +0900) -latest-prerequisite time: 2024-05-25 17:09:48 +0900 +--prepare:uniprot (2024-06-03 11:43:22 +0900) +latest-prerequisite time: 2024-06-03 11:43:22 +0900 ................................ -### Update TSV for uniprot-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-dbsnp.tsv is newer than config/uniprot-dbsnp/config.yaml -# File output/tsv/uniprot-dbsnp.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-dbsnp.tsv +# File output/tsv/uniprot-dbsnp.tsv is older than input/uniprot/download.lock +## Update config/uniprot-dbsnp/config.yaml => output/tsv/uniprot-dbsnp.tsv +< 2024-06-03T11:43:22 uniprot-dbsnp +togoid-config config/uniprot-dbsnp update +# Success: output/tsv/uniprot-dbsnp.tsv is updated +> 2024-06-03T11:43:46 uniprot-dbsnp Rule for TSV (output/tsv/uniprot-dbsnp.tsv) ------------------------------ Investigating output/tsv/uniprot-dbsnp.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 11:29:13 +0900 +timestamp: 2024-06-03 11:43:46 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:48 +0900) -latest-prerequisite time: 2024-05-25 17:09:48 +0900 +--prepare:uniprot (2024-06-03 11:43:46 +0900) +latest-prerequisite time: 2024-06-03 11:43:46 +0900 ................................ -### Update TSV for uniprot-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-ec.tsv is newer than config/uniprot-ec/config.yaml -# File output/tsv/uniprot-ec.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-ec.tsv +# File output/tsv/uniprot-ec.tsv is older than input/uniprot/download.lock +## Update config/uniprot-ec/config.yaml => output/tsv/uniprot-ec.tsv +< 2024-06-03T11:43:46 uniprot-ec +togoid-config config/uniprot-ec update +# Success: output/tsv/uniprot-ec.tsv is updated +> 2024-06-03T12:12:40 uniprot-ec Rule for TSV (output/tsv/uniprot-ec.tsv) ------------------------------ Investigating output/tsv/uniprot-ec.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 11:57:55 +0900 +timestamp: 2024-06-03 12:12:40 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:48 +0900) -latest-prerequisite time: 2024-05-25 17:09:48 +0900 +--prepare:uniprot (2024-06-03 12:12:40 +0900) +latest-prerequisite time: 2024-06-03 12:12:40 +0900 ................................ -### Update TSV for uniprot-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-ensembl_gene.tsv is newer than config/uniprot-ensembl_gene/config.yaml -# File output/tsv/uniprot-ensembl_gene.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-ensembl_gene.tsv +# File output/tsv/uniprot-ensembl_gene.tsv is older than input/uniprot/download.lock +## Update config/uniprot-ensembl_gene/config.yaml => output/tsv/uniprot-ensembl_gene.tsv +< 2024-06-03T12:12:40 uniprot-ensembl_gene +togoid-config config/uniprot-ensembl_gene update +# Success: output/tsv/uniprot-ensembl_gene.tsv is updated +> 2024-06-03T12:58:46 uniprot-ensembl_gene Rule for TSV (output/tsv/uniprot-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/uniprot-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 12:46:01 +0900 +timestamp: 2024-06-03 12:58:46 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:48 +0900) -latest-prerequisite time: 2024-05-25 17:09:48 +0900 +--prepare:uniprot (2024-06-03 12:58:46 +0900) +latest-prerequisite time: 2024-06-03 12:58:46 +0900 ................................ -### Update TSV for uniprot-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-ensembl_protein.tsv is newer than config/uniprot-ensembl_protein/config.yaml -# File output/tsv/uniprot-ensembl_protein.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-ensembl_protein.tsv +# File output/tsv/uniprot-ensembl_protein.tsv is older than input/uniprot/download.lock +## Update config/uniprot-ensembl_protein/config.yaml => output/tsv/uniprot-ensembl_protein.tsv +< 2024-06-03T12:58:46 uniprot-ensembl_protein +togoid-config config/uniprot-ensembl_protein update +# Success: output/tsv/uniprot-ensembl_protein.tsv is updated +> 2024-06-03T13:45:06 uniprot-ensembl_protein Rule for TSV (output/tsv/uniprot-ensembl_protein.tsv) ------------------------------ Investigating output/tsv/uniprot-ensembl_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 13:33:52 +0900 +timestamp: 2024-06-03 13:45:06 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:48 +0900) -latest-prerequisite time: 2024-05-25 17:09:48 +0900 +--prepare:uniprot (2024-06-03 13:45:06 +0900) +latest-prerequisite time: 2024-06-03 13:45:06 +0900 ................................ -### Update TSV for uniprot-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-ensembl_transcript.tsv is newer than config/uniprot-ensembl_transcript/config.yaml -# File output/tsv/uniprot-ensembl_transcript.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-ensembl_transcript.tsv +# File output/tsv/uniprot-ensembl_transcript.tsv is older than input/uniprot/download.lock +## Update config/uniprot-ensembl_transcript/config.yaml => output/tsv/uniprot-ensembl_transcript.tsv +< 2024-06-03T13:45:06 uniprot-ensembl_transcript +togoid-config config/uniprot-ensembl_transcript update +# Success: output/tsv/uniprot-ensembl_transcript.tsv is updated +> 2024-06-03T14:30:36 uniprot-ensembl_transcript Rule for TSV (output/tsv/uniprot-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/uniprot-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 14:21:45 +0900 +timestamp: 2024-06-03 14:30:36 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:48 +0900) -latest-prerequisite time: 2024-05-25 17:09:48 +0900 +--prepare:uniprot (2024-06-03 14:30:36 +0900) +latest-prerequisite time: 2024-06-03 14:30:36 +0900 ................................ -### Update TSV for uniprot-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-go.tsv is newer than config/uniprot-go/config.yaml -# File output/tsv/uniprot-go.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-go.tsv +# File output/tsv/uniprot-go.tsv is older than input/uniprot/download.lock +## Update config/uniprot-go/config.yaml => output/tsv/uniprot-go.tsv +< 2024-06-03T14:30:36 uniprot-go +togoid-config config/uniprot-go update +# Success: output/tsv/uniprot-go.tsv is updated +> 2024-06-03T14:50:30 uniprot-go Rule for TSV (output/tsv/uniprot-go.tsv) ------------------------------ Investigating output/tsv/uniprot-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 14:38:14 +0900 +timestamp: 2024-06-03 14:50:30 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:48 +0900) -latest-prerequisite time: 2024-05-25 17:09:48 +0900 +--prepare:uniprot (2024-06-03 14:50:30 +0900) +latest-prerequisite time: 2024-06-03 14:50:30 +0900 ................................ -### Update TSV for uniprot-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-hgnc.tsv is newer than config/uniprot-hgnc/config.yaml -# File output/tsv/uniprot-hgnc.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-hgnc.tsv +# File output/tsv/uniprot-hgnc.tsv is older than input/uniprot/download.lock +## Update config/uniprot-hgnc/config.yaml => output/tsv/uniprot-hgnc.tsv +< 2024-06-03T14:50:30 uniprot-hgnc +togoid-config config/uniprot-hgnc update +# Success: output/tsv/uniprot-hgnc.tsv is updated +> 2024-06-03T15:27:42 uniprot-hgnc Rule for TSV (output/tsv/uniprot-hgnc.tsv) ------------------------------ Investigating output/tsv/uniprot-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 15:19:08 +0900 +timestamp: 2024-06-03 15:27:42 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:48 +0900) -latest-prerequisite time: 2024-05-25 17:09:48 +0900 +--prepare:uniprot (2024-06-03 15:27:42 +0900) +latest-prerequisite time: 2024-06-03 15:27:42 +0900 ................................ -### Update TSV for uniprot-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-insdc.tsv is newer than config/uniprot-insdc/config.yaml -# File output/tsv/uniprot-insdc.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-insdc.tsv +# File output/tsv/uniprot-insdc.tsv is older than input/uniprot/download.lock +## Update config/uniprot-insdc/config.yaml => output/tsv/uniprot-insdc.tsv +< 2024-06-03T15:27:42 uniprot-insdc +togoid-config config/uniprot-insdc update +# Success: output/tsv/uniprot-insdc.tsv is updated +> 2024-06-03T16:12:40 uniprot-insdc Rule for TSV (output/tsv/uniprot-insdc.tsv) ------------------------------ Investigating output/tsv/uniprot-insdc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 16:08:12 +0900 +timestamp: 2024-06-03 16:12:40 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:48 +0900) -latest-prerequisite time: 2024-05-25 17:09:48 +0900 +--prepare:uniprot (2024-06-03 16:12:40 +0900) +latest-prerequisite time: 2024-06-03 16:12:40 +0900 ................................ -### Update TSV for uniprot-intact if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-intact if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-intact.tsv is newer than config/uniprot-intact/config.yaml -# File output/tsv/uniprot-intact.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-intact.tsv +# File output/tsv/uniprot-intact.tsv is older than input/uniprot/download.lock +## Update config/uniprot-intact/config.yaml => output/tsv/uniprot-intact.tsv +< 2024-06-03T16:12:40 uniprot-intact +togoid-config config/uniprot-intact update +# Success: output/tsv/uniprot-intact.tsv is updated +> 2024-06-03T16:13:41 uniprot-intact Rule for TSV (output/tsv/uniprot-intact.tsv) ------------------------------ Investigating output/tsv/uniprot-intact.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 16:09:18 +0900 +timestamp: 2024-06-03 16:13:41 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:48 +0900) -latest-prerequisite time: 2024-05-25 17:09:48 +0900 +--prepare:uniprot (2024-06-03 16:13:41 +0900) +latest-prerequisite time: 2024-06-03 16:13:41 +0900 ................................ -### Update TSV for uniprot-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-ncbigene.tsv is newer than config/uniprot-ncbigene/config.yaml -# File output/tsv/uniprot-ncbigene.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-ncbigene.tsv +# File output/tsv/uniprot-ncbigene.tsv is older than input/uniprot/download.lock +## Update config/uniprot-ncbigene/config.yaml => output/tsv/uniprot-ncbigene.tsv +< 2024-06-03T16:13:41 uniprot-ncbigene +togoid-config config/uniprot-ncbigene update +# Success: output/tsv/uniprot-ncbigene.tsv is updated +> 2024-06-03T16:51:31 uniprot-ncbigene Rule for TSV (output/tsv/uniprot-ncbigene.tsv) ------------------------------ Investigating output/tsv/uniprot-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 16:50:28 +0900 +timestamp: 2024-06-03 16:51:31 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:48 +0900) -latest-prerequisite time: 2024-05-25 17:09:48 +0900 +--prepare:uniprot (2024-06-03 16:51:31 +0900) +latest-prerequisite time: 2024-06-03 16:51:31 +0900 ................................ -### Update TSV for uniprot-oma_group if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-oma_group if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-oma_group.tsv is newer than config/uniprot-oma_group/config.yaml -# File output/tsv/uniprot-oma_group.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-oma_group.tsv +# File output/tsv/uniprot-oma_group.tsv is older than input/uniprot/download.lock +## Update config/uniprot-oma_group/config.yaml => output/tsv/uniprot-oma_group.tsv +< 2024-06-03T16:51:31 uniprot-oma_group +togoid-config config/uniprot-oma_group update +# Success: output/tsv/uniprot-oma_group.tsv is updated +> 2024-06-03T17:30:22 uniprot-oma_group Rule for TSV (output/tsv/uniprot-oma_group.tsv) ------------------------------ Investigating output/tsv/uniprot-oma_group.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 17:30:34 +0900 +timestamp: 2024-06-03 17:30:22 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:48 +0900) -latest-prerequisite time: 2024-05-25 17:09:48 +0900 +--prepare:uniprot (2024-06-03 17:30:22 +0900) +latest-prerequisite time: 2024-06-03 17:30:22 +0900 ................................ -### Update TSV for uniprot-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-omim_gene.tsv is newer than config/uniprot-omim_gene/config.yaml -# File output/tsv/uniprot-omim_gene.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-omim_gene.tsv +# File output/tsv/uniprot-omim_gene.tsv is older than input/uniprot/download.lock +## Update config/uniprot-omim_gene/config.yaml => output/tsv/uniprot-omim_gene.tsv +< 2024-06-03T17:30:22 uniprot-omim_gene +togoid-config config/uniprot-omim_gene update +# Success: output/tsv/uniprot-omim_gene.tsv is updated +> 2024-06-03T17:30:28 uniprot-omim_gene Rule for TSV (output/tsv/uniprot-omim_gene.tsv) ------------------------------ Investigating output/tsv/uniprot-omim_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 17:30:41 +0900 +timestamp: 2024-06-03 17:30:28 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:49 +0900) -latest-prerequisite time: 2024-05-25 17:09:49 +0900 +--prepare:uniprot (2024-06-03 17:30:28 +0900) +latest-prerequisite time: 2024-06-03 17:30:28 +0900 ................................ -### Update TSV for uniprot-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-omim_phenotype.tsv is newer than config/uniprot-omim_phenotype/config.yaml -# File output/tsv/uniprot-omim_phenotype.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-omim_phenotype.tsv +# File output/tsv/uniprot-omim_phenotype.tsv is older than input/uniprot/download.lock +## Update config/uniprot-omim_phenotype/config.yaml => output/tsv/uniprot-omim_phenotype.tsv +< 2024-06-03T17:30:28 uniprot-omim_phenotype +togoid-config config/uniprot-omim_phenotype update +# Success: output/tsv/uniprot-omim_phenotype.tsv is updated +> 2024-06-03T17:30:31 uniprot-omim_phenotype Rule for TSV (output/tsv/uniprot-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/uniprot-omim_phenotype.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 17:30:44 +0900 +timestamp: 2024-06-03 17:30:31 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:49 +0900) -latest-prerequisite time: 2024-05-25 17:09:49 +0900 +--prepare:uniprot (2024-06-03 17:30:31 +0900) +latest-prerequisite time: 2024-06-03 17:30:31 +0900 ................................ -### Update TSV for uniprot-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-orphanet_phenotype.tsv is newer than config/uniprot-orphanet_phenotype/config.yaml -# File output/tsv/uniprot-orphanet_phenotype.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-orphanet_phenotype.tsv +# File output/tsv/uniprot-orphanet_phenotype.tsv is older than input/uniprot/download.lock +## Update config/uniprot-orphanet_phenotype/config.yaml => output/tsv/uniprot-orphanet_phenotype.tsv +< 2024-06-03T17:30:31 uniprot-orphanet_phenotype +togoid-config config/uniprot-orphanet_phenotype update +# Success: output/tsv/uniprot-orphanet_phenotype.tsv is updated +> 2024-06-03T18:15:59 uniprot-orphanet_phenotype Rule for TSV (output/tsv/uniprot-orphanet_phenotype.tsv) ------------------------------ Investigating output/tsv/uniprot-orphanet_phenotype.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 18:22:15 +0900 +timestamp: 2024-06-03 18:15:59 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:49 +0900) -latest-prerequisite time: 2024-05-25 17:09:49 +0900 +--prepare:uniprot (2024-06-03 18:15:59 +0900) +latest-prerequisite time: 2024-06-03 18:15:59 +0900 ................................ -### Update TSV for uniprot-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-pdb.tsv is newer than config/uniprot-pdb/config.yaml -# File output/tsv/uniprot-pdb.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-pdb.tsv +# File output/tsv/uniprot-pdb.tsv is older than input/uniprot/download.lock +## Update config/uniprot-pdb/config.yaml => output/tsv/uniprot-pdb.tsv +< 2024-06-03T18:16:00 uniprot-pdb +togoid-config config/uniprot-pdb update +# Success: output/tsv/uniprot-pdb.tsv is updated +> 2024-06-03T18:54:08 uniprot-pdb Rule for TSV (output/tsv/uniprot-pdb.tsv) ------------------------------ Investigating output/tsv/uniprot-pdb.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 19:06:26 +0900 +timestamp: 2024-06-03 18:54:08 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:49 +0900) -latest-prerequisite time: 2024-05-25 17:09:49 +0900 +--prepare:uniprot (2024-06-03 18:54:08 +0900) +latest-prerequisite time: 2024-06-03 18:54:08 +0900 ................................ -### Update TSV for uniprot-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-reactome_pathway.tsv is newer than config/uniprot-reactome_pathway/config.yaml -# File output/tsv/uniprot-reactome_pathway.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-reactome_pathway.tsv +# File output/tsv/uniprot-reactome_pathway.tsv is older than input/uniprot/download.lock +## Update config/uniprot-reactome_pathway/config.yaml => output/tsv/uniprot-reactome_pathway.tsv +< 2024-06-03T18:54:08 uniprot-reactome_pathway +togoid-config config/uniprot-reactome_pathway update +# Success: output/tsv/uniprot-reactome_pathway.tsv is updated +> 2024-06-03T19:39:41 uniprot-reactome_pathway Rule for TSV (output/tsv/uniprot-reactome_pathway.tsv) ------------------------------ Investigating output/tsv/uniprot-reactome_pathway.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 19:55:45 +0900 +timestamp: 2024-06-03 19:39:41 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:49 +0900) -latest-prerequisite time: 2024-05-25 17:09:49 +0900 +--prepare:uniprot (2024-06-03 19:39:41 +0900) +latest-prerequisite time: 2024-06-03 19:39:41 +0900 ................................ -### Update TSV for uniprot-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-refseq_protein.tsv is newer than config/uniprot-refseq_protein/config.yaml -# File output/tsv/uniprot-refseq_protein.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-refseq_protein.tsv +# File output/tsv/uniprot-refseq_protein.tsv is older than input/uniprot/download.lock +## Update config/uniprot-refseq_protein/config.yaml => output/tsv/uniprot-refseq_protein.tsv +< 2024-06-03T19:39:41 uniprot-refseq_protein +togoid-config config/uniprot-refseq_protein update +# Success: output/tsv/uniprot-refseq_protein.tsv is updated +> 2024-06-03T20:18:58 uniprot-refseq_protein Rule for TSV (output/tsv/uniprot-refseq_protein.tsv) ------------------------------ Investigating output/tsv/uniprot-refseq_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 20:42:47 +0900 +timestamp: 2024-06-03 20:18:58 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:49 +0900) -latest-prerequisite time: 2024-05-25 17:09:49 +0900 +--prepare:uniprot (2024-06-03 20:18:58 +0900) +latest-prerequisite time: 2024-06-03 20:18:58 +0900 ................................ -### Update TSV for uniprot-uniprot_mnemonic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot-uniprot_mnemonic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot-uniprot_mnemonic.tsv is newer than config/uniprot-uniprot_mnemonic/config.yaml -# File output/tsv/uniprot-uniprot_mnemonic.tsv is newer than input/uniprot/download.lock -# => Preserving output/tsv/uniprot-uniprot_mnemonic.tsv +# File output/tsv/uniprot-uniprot_mnemonic.tsv is older than input/uniprot/download.lock +## Update config/uniprot-uniprot_mnemonic/config.yaml => output/tsv/uniprot-uniprot_mnemonic.tsv +< 2024-06-03T20:18:58 uniprot-uniprot_mnemonic +togoid-config config/uniprot-uniprot_mnemonic update +# Success: output/tsv/uniprot-uniprot_mnemonic.tsv is updated +> 2024-06-03T21:12:48 uniprot-uniprot_mnemonic Rule for TSV (output/tsv/uniprot-uniprot_mnemonic.tsv) ------------------------------ Investigating output/tsv/uniprot-uniprot_mnemonic.tsv class: Rake::FileTask task needed: true -timestamp: 2024-03-31 21:41:21 +0900 +timestamp: 2024-06-03 21:12:48 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:49 +0900) -latest-prerequisite time: 2024-05-25 17:09:49 +0900 +--prepare:uniprot (2024-06-03 21:12:48 +0900) +latest-prerequisite time: 2024-06-03 21:12:48 +0900 ................................ ### Update TSV for uniprot_reference_proteome-assembly_insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is newer than config/uniprot_reference_proteome-assembly_insdc/config.yaml # File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is created 7.432938091740984 days ago (will be updated when >5 days) +# File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is created 9.168734000761633 days ago (will be updated when >5 days) ## Update config/uniprot_reference_proteome-assembly_insdc/config.yaml => output/tsv/uniprot_reference_proteome-assembly_insdc.tsv -< 2024-05-25T17:09:49 uniprot_reference_proteome-assembly_insdc +< 2024-06-03T21:12:48 uniprot_reference_proteome-assembly_insdc togoid-config config/uniprot_reference_proteome-assembly_insdc update # Success: output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is updated -> 2024-05-25T17:09:49 uniprot_reference_proteome-assembly_insdc +> 2024-06-03T21:12:49 uniprot_reference_proteome-assembly_insdc Rule for TSV (output/tsv/uniprot_reference_proteome-assembly_insdc.tsv) ------------------------------ Investigating output/tsv/uniprot_reference_proteome-assembly_insdc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:09:49 +0900 +timestamp: 2024-06-03 21:12:49 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:49 +0900) -latest-prerequisite time: 2024-05-25 17:09:49 +0900 +--prepare:uniprot (2024-06-03 21:12:49 +0900) +latest-prerequisite time: 2024-06-03 21:12:49 +0900 ................................ ### Update TSV for uniprot_reference_proteome-assembly_refseq if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is newer than config/uniprot_reference_proteome-assembly_refseq/config.yaml # File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is created 7.432939454609642 days ago (will be updated when >5 days) +# File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is created 9.168737358491795 days ago (will be updated when >5 days) ## Update config/uniprot_reference_proteome-assembly_refseq/config.yaml => output/tsv/uniprot_reference_proteome-assembly_refseq.tsv -< 2024-05-25T17:09:49 uniprot_reference_proteome-assembly_refseq +< 2024-06-03T21:12:49 uniprot_reference_proteome-assembly_refseq togoid-config config/uniprot_reference_proteome-assembly_refseq update # Success: output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is updated -> 2024-05-25T17:09:50 uniprot_reference_proteome-assembly_refseq +> 2024-06-03T21:12:49 uniprot_reference_proteome-assembly_refseq Rule for TSV (output/tsv/uniprot_reference_proteome-assembly_refseq.tsv) ------------------------------ Investigating output/tsv/uniprot_reference_proteome-assembly_refseq.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:09:50 +0900 +timestamp: 2024-06-03 21:12:49 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:50 +0900) -latest-prerequisite time: 2024-05-25 17:09:50 +0900 +--prepare:uniprot (2024-06-03 21:12:49 +0900) +latest-prerequisite time: 2024-06-03 21:12:49 +0900 ................................ ### Update TSV for uniprot_reference_proteome-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-taxonomy.tsv is newer than config/uniprot_reference_proteome-taxonomy/config.yaml # File output/tsv/uniprot_reference_proteome-taxonomy.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-taxonomy.tsv is created 7.43293932902463 days ago (will be updated when >5 days) +# File output/tsv/uniprot_reference_proteome-taxonomy.tsv is created 9.168736195247686 days ago (will be updated when >5 days) ## Update config/uniprot_reference_proteome-taxonomy/config.yaml => output/tsv/uniprot_reference_proteome-taxonomy.tsv -< 2024-05-25T17:09:50 uniprot_reference_proteome-taxonomy +< 2024-06-03T21:12:49 uniprot_reference_proteome-taxonomy togoid-config config/uniprot_reference_proteome-taxonomy update # Success: output/tsv/uniprot_reference_proteome-taxonomy.tsv is updated -> 2024-05-25T17:09:50 uniprot_reference_proteome-taxonomy +> 2024-06-03T21:12:50 uniprot_reference_proteome-taxonomy Rule for TSV (output/tsv/uniprot_reference_proteome-taxonomy.tsv) ------------------------------ Investigating output/tsv/uniprot_reference_proteome-taxonomy.tsv class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:09:50 +0900 +timestamp: 2024-06-03 21:12:50 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-05-25 17:09:50 +0900) -latest-prerequisite time: 2024-05-25 17:09:50 +0900 +--prepare:uniprot (2024-06-03 21:12:50 +0900) +latest-prerequisite time: 2024-06-03 21:12:50 +0900 ................................ ### Update TSV for wikipathways-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-chebi.tsv is newer than config/wikipathways-chebi/config.yaml # File output/tsv/wikipathways-chebi.tsv has no timestamp file -# File output/tsv/wikipathways-chebi.tsv is created 77.7256844479959 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-chebi.tsv is created 86.89442608598453 days ago (will be updated when >5 days) ## Update config/wikipathways-chebi/config.yaml => output/tsv/wikipathways-chebi.tsv -< 2024-05-25T17:09:50 wikipathways-chebi +< 2024-06-03T21:12:50 wikipathways-chebi togoid-config config/wikipathways-chebi update # Error: output/tsv/wikipathways-chebi.tsv new file size per old 69817 / 148433 = 0.47036036460894814 < 0.5 # Failure: output/tsv/wikipathways-chebi.tsv is not updated -> 2024-05-25T17:09:54 wikipathways-chebi +> 2024-06-03T21:12:54 wikipathways-chebi Rule for TSV (output/tsv/wikipathways-chebi.tsv) ------------------------------ Investigating output/tsv/wikipathways-chebi.tsv @@ -5562,104 +5699,104 @@ task needed: true timestamp: 2024-03-08 23:44:51 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for wikipathways-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-doid.tsv is newer than config/wikipathways-doid/config.yaml # File output/tsv/wikipathways-doid.tsv has no timestamp file -# File output/tsv/wikipathways-doid.tsv is created 7.4329248662733445 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-doid.tsv is created 9.168722229846528 days ago (will be updated when >5 days) ## Update config/wikipathways-doid/config.yaml => output/tsv/wikipathways-doid.tsv -< 2024-05-25T17:09:54 wikipathways-doid +< 2024-06-03T21:12:54 wikipathways-doid togoid-config config/wikipathways-doid update # Success: output/tsv/wikipathways-doid.tsv is updated -> 2024-05-25T17:09:56 wikipathways-doid +> 2024-06-03T21:12:56 wikipathways-doid Rule for TSV (output/tsv/wikipathways-doid.tsv) ------------------------------ Investigating output/tsv/wikipathways-doid.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 17:09:56 +0900 +timestamp: 2024-06-03 21:12:56 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for wikipathways-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-hmdb.tsv is newer than config/wikipathways-hmdb/config.yaml # File output/tsv/wikipathways-hmdb.tsv has no timestamp file -# File output/tsv/wikipathways-hmdb.tsv is created 7.432919896076574 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-hmdb.tsv is created 9.16871487047772 days ago (will be updated when >5 days) ## Update config/wikipathways-hmdb/config.yaml => output/tsv/wikipathways-hmdb.tsv -< 2024-05-25T17:09:56 wikipathways-hmdb +< 2024-06-03T21:12:56 wikipathways-hmdb togoid-config config/wikipathways-hmdb update # Success: output/tsv/wikipathways-hmdb.tsv is updated -> 2024-05-25T17:09:59 wikipathways-hmdb +> 2024-06-03T21:12:58 wikipathways-hmdb Rule for TSV (output/tsv/wikipathways-hmdb.tsv) ------------------------------ Investigating output/tsv/wikipathways-hmdb.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 17:09:59 +0900 +timestamp: 2024-06-03 21:12:58 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for wikipathways-lipidmaps if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-lipidmaps.tsv is newer than config/wikipathways-lipidmaps/config.yaml # File output/tsv/wikipathways-lipidmaps.tsv has no timestamp file -# File output/tsv/wikipathways-lipidmaps.tsv is created 7.432927237779457 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-lipidmaps.tsv is created 9.168719585613784 days ago (will be updated when >5 days) ## Update config/wikipathways-lipidmaps/config.yaml => output/tsv/wikipathways-lipidmaps.tsv -< 2024-05-25T17:09:59 wikipathways-lipidmaps +< 2024-06-03T21:12:58 wikipathways-lipidmaps togoid-config config/wikipathways-lipidmaps update # Success: output/tsv/wikipathways-lipidmaps.tsv is updated -> 2024-05-25T17:10:00 wikipathways-lipidmaps +> 2024-06-03T21:13:00 wikipathways-lipidmaps Rule for TSV (output/tsv/wikipathways-lipidmaps.tsv) ------------------------------ Investigating output/tsv/wikipathways-lipidmaps.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 17:10:00 +0900 +timestamp: 2024-06-03 21:13:00 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for wikipathways-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-ncbigene.tsv is newer than config/wikipathways-ncbigene/config.yaml # File output/tsv/wikipathways-ncbigene.tsv has no timestamp file -# File output/tsv/wikipathways-ncbigene.tsv is created 7.432791226799988 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-ncbigene.tsv is created 9.168586299290359 days ago (will be updated when >5 days) ## Update config/wikipathways-ncbigene/config.yaml => output/tsv/wikipathways-ncbigene.tsv -< 2024-05-25T17:10:00 wikipathways-ncbigene +< 2024-06-03T21:13:00 wikipathways-ncbigene togoid-config config/wikipathways-ncbigene update # Success: output/tsv/wikipathways-ncbigene.tsv is updated -> 2024-05-25T17:10:14 wikipathways-ncbigene +> 2024-06-03T21:13:13 wikipathways-ncbigene Rule for TSV (output/tsv/wikipathways-ncbigene.tsv) ------------------------------ Investigating output/tsv/wikipathways-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-05-25 17:10:14 +0900 +timestamp: 2024-06-03 21:13:13 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TSV for wikipathways-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-uniprot.tsv is newer than config/wikipathways-uniprot/config.yaml # File output/tsv/wikipathways-uniprot.tsv has no timestamp file -# File output/tsv/wikipathways-uniprot.tsv is created 77.72553440289391 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-uniprot.tsv is created 86.89427350038953 days ago (will be updated when >5 days) ## Update config/wikipathways-uniprot/config.yaml => output/tsv/wikipathways-uniprot.tsv -< 2024-05-25T17:10:14 wikipathways-uniprot +< 2024-06-03T21:13:13 wikipathways-uniprot togoid-config config/wikipathways-uniprot update # Error: output/tsv/wikipathways-uniprot.tsv new file size per old 57944 / 470542 = 0.12314309880945803 < 0.5 # Failure: output/tsv/wikipathways-uniprot.tsv is not updated -> 2024-05-25T17:10:18 wikipathways-uniprot +> 2024-06-03T21:13:17 wikipathways-uniprot Rule for TSV (output/tsv/wikipathways-uniprot.tsv) ------------------------------ Investigating output/tsv/wikipathways-uniprot.tsv @@ -5668,70 +5805,70 @@ task needed: true timestamp: 2024-03-08 23:45:28 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-05-25 13:48:36 +0900) -latest-prerequisite time: 2024-05-25 13:48:36 +0900 +--input/update.txt (2024-06-03 03:49:55 +0900) +latest-prerequisite time: 2024-06-03 03:49:55 +0900 ................................ ### Update TTL for affy_probeset-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/affy_probeset-ncbigene.ttl is older than output/tsv/affy_probeset-ncbigene.tsv ## Convert output/tsv/affy_probeset-ncbigene.tsv => output/ttl/affy_probeset-ncbigene.ttl -< 2024-05-25T17:10:18 affy_probeset-ncbigene +< 2024-06-03T21:13:17 affy_probeset-ncbigene togoid-config config/affy_probeset-ncbigene convert -> 2024-05-25T17:10:19 affy_probeset-ncbigene +> 2024-06-03T21:13:18 affy_probeset-ncbigene ### Update TTL for assembly_insdc-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-bioproject.ttl is older than output/tsv/assembly_insdc-bioproject.tsv ## Convert output/tsv/assembly_insdc-bioproject.tsv => output/ttl/assembly_insdc-bioproject.ttl -< 2024-05-25T17:10:19 assembly_insdc-bioproject +< 2024-06-03T21:13:18 assembly_insdc-bioproject togoid-config config/assembly_insdc-bioproject convert -> 2024-05-25T17:10:38 assembly_insdc-bioproject +> 2024-06-03T21:13:36 assembly_insdc-bioproject ### Update TTL for assembly_insdc-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-biosample.ttl is older than output/tsv/assembly_insdc-biosample.tsv ## Convert output/tsv/assembly_insdc-biosample.tsv => output/ttl/assembly_insdc-biosample.ttl -< 2024-05-25T17:10:38 assembly_insdc-biosample +< 2024-06-03T21:13:36 assembly_insdc-biosample togoid-config config/assembly_insdc-biosample convert -> 2024-05-25T17:10:57 assembly_insdc-biosample +> 2024-06-03T21:13:55 assembly_insdc-biosample ### Update TTL for assembly_insdc-insdc_master if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-insdc_master.ttl is older than output/tsv/assembly_insdc-insdc_master.tsv ## Convert output/tsv/assembly_insdc-insdc_master.tsv => output/ttl/assembly_insdc-insdc_master.ttl -< 2024-05-25T17:10:57 assembly_insdc-insdc_master +< 2024-06-03T21:13:55 assembly_insdc-insdc_master togoid-config config/assembly_insdc-insdc_master convert -> 2024-05-25T17:11:15 assembly_insdc-insdc_master +> 2024-06-03T21:14:13 assembly_insdc-insdc_master ### Update TTL for bioproject-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-biosample.ttl is older than output/tsv/bioproject-biosample.tsv ## Convert output/tsv/bioproject-biosample.tsv => output/ttl/bioproject-biosample.ttl -< 2024-05-25T17:11:15 bioproject-biosample +< 2024-06-03T21:14:13 bioproject-biosample togoid-config config/bioproject-biosample convert -> 2024-05-25T17:11:36 bioproject-biosample +> 2024-06-03T21:14:35 bioproject-biosample ### Update TTL for bioproject-geo_series if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-geo_series.ttl is older than output/tsv/bioproject-geo_series.tsv ## Convert output/tsv/bioproject-geo_series.tsv => output/ttl/bioproject-geo_series.ttl -< 2024-05-25T17:11:36 bioproject-geo_series +< 2024-06-03T21:14:35 bioproject-geo_series togoid-config config/bioproject-geo_series convert -> 2024-05-25T17:11:38 bioproject-geo_series +> 2024-06-03T21:14:37 bioproject-geo_series ### Update TTL for bioproject-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-pubmed.ttl is older than output/tsv/bioproject-pubmed.tsv ## Convert output/tsv/bioproject-pubmed.tsv => output/ttl/bioproject-pubmed.ttl -< 2024-05-25T17:11:38 bioproject-pubmed +< 2024-06-03T21:14:37 bioproject-pubmed togoid-config config/bioproject-pubmed convert -> 2024-05-25T17:11:40 bioproject-pubmed +> 2024-06-03T21:14:39 bioproject-pubmed ### Update TTL for bioproject_umbrella-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject_umbrella-bioproject.ttl is older than output/tsv/bioproject_umbrella-bioproject.tsv ## Convert output/tsv/bioproject_umbrella-bioproject.tsv => output/ttl/bioproject_umbrella-bioproject.ttl -< 2024-05-25T17:11:40 bioproject_umbrella-bioproject +< 2024-06-03T21:14:39 bioproject_umbrella-bioproject togoid-config config/bioproject_umbrella-bioproject convert -> 2024-05-25T17:11:41 bioproject_umbrella-bioproject +> 2024-06-03T21:14:40 bioproject_umbrella-bioproject ### Update TTL for biosample-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/biosample-bioproject.ttl is older than output/tsv/biosample-bioproject.tsv ## Convert output/tsv/biosample-bioproject.tsv => output/ttl/biosample-bioproject.ttl -< 2024-05-25T17:11:41 biosample-bioproject +< 2024-06-03T21:14:40 biosample-bioproject togoid-config config/biosample-bioproject convert -> 2024-05-25T17:14:19 biosample-bioproject +> 2024-06-03T21:17:24 biosample-bioproject ### Update TTL for biosample-geo_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/biosample-geo_sample.ttl is older than output/tsv/biosample-geo_sample.tsv ## Convert output/tsv/biosample-geo_sample.tsv => output/ttl/biosample-geo_sample.ttl -< 2024-05-25T17:14:19 biosample-geo_sample +< 2024-06-03T21:17:24 biosample-geo_sample togoid-config config/biosample-geo_sample convert -> 2024-05-25T17:15:32 biosample-geo_sample +> 2024-06-03T21:18:38 biosample-geo_sample ### Update TTL for cellosaurus-ncit_disease if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/cellosaurus-ncit_disease.ttl is newer than output/tsv/cellosaurus-ncit_disease.tsv # => Preserving output/ttl/cellosaurus-ncit_disease.ttl @@ -5741,114 +5878,114 @@ togoid-config config/biosample-geo_sample convert ### Update TTL for chebi-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chebi-inchi_key.ttl is older than output/tsv/chebi-inchi_key.tsv ## Convert output/tsv/chebi-inchi_key.tsv => output/ttl/chebi-inchi_key.ttl -< 2024-05-25T17:15:32 chebi-inchi_key +< 2024-06-03T21:18:38 chebi-inchi_key togoid-config config/chebi-inchi_key convert -> 2024-05-25T17:15:34 chebi-inchi_key +> 2024-06-03T21:18:40 chebi-inchi_key ### Update TTL for chembl_compound-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-chebi.ttl is older than output/tsv/chembl_compound-chebi.tsv ## Convert output/tsv/chembl_compound-chebi.tsv => output/ttl/chembl_compound-chebi.ttl -< 2024-05-25T17:15:34 chembl_compound-chebi +< 2024-06-03T21:18:40 chembl_compound-chebi togoid-config config/chembl_compound-chebi convert -> 2024-05-25T17:15:34 chembl_compound-chebi +> 2024-06-03T21:18:41 chembl_compound-chebi ### Update TTL for chembl_compound-chembl_target if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-chembl_target.ttl is older than output/tsv/chembl_compound-chembl_target.tsv ## Convert output/tsv/chembl_compound-chembl_target.tsv => output/ttl/chembl_compound-chembl_target.ttl -< 2024-05-25T17:15:34 chembl_compound-chembl_target +< 2024-06-03T21:18:41 chembl_compound-chembl_target togoid-config config/chembl_compound-chembl_target convert -> 2024-05-25T17:16:03 chembl_compound-chembl_target +> 2024-06-03T21:19:08 chembl_compound-chembl_target ### Update TTL for chembl_compound-drugbank if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-drugbank.ttl is older than output/tsv/chembl_compound-drugbank.tsv ## Convert output/tsv/chembl_compound-drugbank.tsv => output/ttl/chembl_compound-drugbank.ttl -< 2024-05-25T17:16:03 chembl_compound-drugbank +< 2024-06-03T21:19:08 chembl_compound-drugbank togoid-config config/chembl_compound-drugbank convert -> 2024-05-25T17:16:03 chembl_compound-drugbank +> 2024-06-03T21:19:08 chembl_compound-drugbank ### Update TTL for chembl_compound-hmdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-hmdb.ttl is older than output/tsv/chembl_compound-hmdb.tsv ## Convert output/tsv/chembl_compound-hmdb.tsv => output/ttl/chembl_compound-hmdb.ttl -< 2024-05-25T17:16:03 chembl_compound-hmdb +< 2024-06-03T21:19:08 chembl_compound-hmdb togoid-config config/chembl_compound-hmdb convert -> 2024-05-25T17:16:03 chembl_compound-hmdb +> 2024-06-03T21:19:09 chembl_compound-hmdb ### Update TTL for chembl_compound-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-inchi_key.ttl is older than output/tsv/chembl_compound-inchi_key.tsv ## Convert output/tsv/chembl_compound-inchi_key.tsv => output/ttl/chembl_compound-inchi_key.ttl -< 2024-05-25T17:16:03 chembl_compound-inchi_key +< 2024-06-03T21:19:09 chembl_compound-inchi_key togoid-config config/chembl_compound-inchi_key convert -> 2024-05-25T17:16:22 chembl_compound-inchi_key +> 2024-06-03T21:19:26 chembl_compound-inchi_key ### Update TTL for chembl_compound-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-mesh.ttl is older than output/tsv/chembl_compound-mesh.tsv ## Convert output/tsv/chembl_compound-mesh.tsv => output/ttl/chembl_compound-mesh.ttl -< 2024-05-25T17:16:22 chembl_compound-mesh +< 2024-06-03T21:19:26 chembl_compound-mesh togoid-config config/chembl_compound-mesh convert -> 2024-05-25T17:16:23 chembl_compound-mesh +> 2024-06-03T21:19:27 chembl_compound-mesh ### Update TTL for chembl_compound-pdb_ccd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pdb_ccd.ttl is older than output/tsv/chembl_compound-pdb_ccd.tsv ## Convert output/tsv/chembl_compound-pdb_ccd.tsv => output/ttl/chembl_compound-pdb_ccd.ttl -< 2024-05-25T17:16:23 chembl_compound-pdb_ccd +< 2024-06-03T21:19:27 chembl_compound-pdb_ccd togoid-config config/chembl_compound-pdb_ccd convert -> 2024-05-25T17:16:23 chembl_compound-pdb_ccd +> 2024-06-03T21:19:27 chembl_compound-pdb_ccd ### Update TTL for chembl_compound-pubchem_compound if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubchem_compound.ttl is older than output/tsv/chembl_compound-pubchem_compound.tsv ## Convert output/tsv/chembl_compound-pubchem_compound.tsv => output/ttl/chembl_compound-pubchem_compound.ttl -< 2024-05-25T17:16:23 chembl_compound-pubchem_compound +< 2024-06-03T21:19:27 chembl_compound-pubchem_compound togoid-config config/chembl_compound-pubchem_compound convert -> 2024-05-25T17:16:41 chembl_compound-pubchem_compound +> 2024-06-03T21:19:43 chembl_compound-pubchem_compound ### Update TTL for chembl_compound-pubchem_substance if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubchem_substance.ttl is older than output/tsv/chembl_compound-pubchem_substance.tsv ## Convert output/tsv/chembl_compound-pubchem_substance.tsv => output/ttl/chembl_compound-pubchem_substance.ttl -< 2024-05-25T17:16:41 chembl_compound-pubchem_substance +< 2024-06-03T21:19:43 chembl_compound-pubchem_substance togoid-config config/chembl_compound-pubchem_substance convert -> 2024-05-25T17:16:45 chembl_compound-pubchem_substance +> 2024-06-03T21:19:47 chembl_compound-pubchem_substance ### Update TTL for chembl_compound-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubmed.ttl is older than output/tsv/chembl_compound-pubmed.tsv ## Convert output/tsv/chembl_compound-pubmed.tsv => output/ttl/chembl_compound-pubmed.ttl -< 2024-05-25T17:16:45 chembl_compound-pubmed +< 2024-06-03T21:19:47 chembl_compound-pubmed togoid-config config/chembl_compound-pubmed convert -> 2024-05-25T17:16:57 chembl_compound-pubmed +> 2024-06-03T21:19:58 chembl_compound-pubmed ### Update TTL for chembl_target-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/chembl_target-ensembl_gene.ttl is newer than output/tsv/chembl_target-ensembl_gene.tsv # => Preserving output/ttl/chembl_target-ensembl_gene.ttl ### Update TTL for chembl_target-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-go.ttl is older than output/tsv/chembl_target-go.tsv ## Convert output/tsv/chembl_target-go.tsv => output/ttl/chembl_target-go.ttl -< 2024-05-25T17:16:57 chembl_target-go +< 2024-06-03T21:19:58 chembl_target-go togoid-config config/chembl_target-go convert -> 2024-05-25T17:16:57 chembl_target-go +> 2024-06-03T21:19:58 chembl_target-go ### Update TTL for chembl_target-interpro if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-interpro.ttl is older than output/tsv/chembl_target-interpro.tsv ## Convert output/tsv/chembl_target-interpro.tsv => output/ttl/chembl_target-interpro.ttl -< 2024-05-25T17:16:57 chembl_target-interpro +< 2024-06-03T21:19:58 chembl_target-interpro togoid-config config/chembl_target-interpro convert -> 2024-05-25T17:16:57 chembl_target-interpro +> 2024-06-03T21:19:58 chembl_target-interpro ### Update TTL for chembl_target-pdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-pdb.ttl is older than output/tsv/chembl_target-pdb.tsv ## Convert output/tsv/chembl_target-pdb.tsv => output/ttl/chembl_target-pdb.ttl -< 2024-05-25T17:16:57 chembl_target-pdb +< 2024-06-03T21:19:58 chembl_target-pdb togoid-config config/chembl_target-pdb convert -> 2024-05-25T17:16:58 chembl_target-pdb +> 2024-06-03T21:19:59 chembl_target-pdb ### Update TTL for chembl_target-pfam if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-pfam.ttl is older than output/tsv/chembl_target-pfam.tsv ## Convert output/tsv/chembl_target-pfam.tsv => output/ttl/chembl_target-pfam.ttl -< 2024-05-25T17:16:58 chembl_target-pfam +< 2024-06-03T21:19:59 chembl_target-pfam togoid-config config/chembl_target-pfam convert -> 2024-05-25T17:16:58 chembl_target-pfam +> 2024-06-03T21:19:59 chembl_target-pfam ### Update TTL for chembl_target-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-reactome_pathway.ttl is older than output/tsv/chembl_target-reactome_pathway.tsv ## Convert output/tsv/chembl_target-reactome_pathway.tsv => output/ttl/chembl_target-reactome_pathway.ttl -< 2024-05-25T17:16:58 chembl_target-reactome_pathway +< 2024-06-03T21:19:59 chembl_target-reactome_pathway togoid-config config/chembl_target-reactome_pathway convert -> 2024-05-25T17:16:59 chembl_target-reactome_pathway +> 2024-06-03T21:19:59 chembl_target-reactome_pathway ### Update TTL for chembl_target-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-uniprot.ttl is older than output/tsv/chembl_target-uniprot.tsv ## Convert output/tsv/chembl_target-uniprot.tsv => output/ttl/chembl_target-uniprot.ttl -< 2024-05-25T17:16:59 chembl_target-uniprot +< 2024-06-03T21:19:59 chembl_target-uniprot togoid-config config/chembl_target-uniprot convert -> 2024-05-25T17:16:59 chembl_target-uniprot +> 2024-06-03T21:19:59 chembl_target-uniprot ### Update TTL for clinvar-medgen if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-medgen.ttl is older than output/tsv/clinvar-medgen.tsv ## Convert output/tsv/clinvar-medgen.tsv => output/ttl/clinvar-medgen.ttl -< 2024-05-25T17:16:59 clinvar-medgen +< 2024-06-03T21:19:59 clinvar-medgen togoid-config config/clinvar-medgen convert -> 2024-05-25T17:17:11 clinvar-medgen +> 2024-06-03T21:20:11 clinvar-medgen ### Update TTL for cog-insdc if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/cog-insdc.ttl is newer than output/tsv/cog-insdc.tsv # => Preserving output/ttl/cog-insdc.ttl @@ -5858,198 +5995,198 @@ togoid-config config/clinvar-medgen convert ### Update TTL for doid-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-mesh.ttl is older than output/tsv/doid-mesh.tsv ## Convert output/tsv/doid-mesh.tsv => output/ttl/doid-mesh.ttl -< 2024-05-25T17:17:11 doid-mesh +< 2024-06-03T21:20:11 doid-mesh togoid-config config/doid-mesh convert -> 2024-05-25T17:17:11 doid-mesh +> 2024-06-03T21:20:12 doid-mesh ### Update TTL for doid-ncit_disease if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-ncit_disease.ttl is older than output/tsv/doid-ncit_disease.tsv ## Convert output/tsv/doid-ncit_disease.tsv => output/ttl/doid-ncit_disease.ttl -< 2024-05-25T17:17:11 doid-ncit_disease +< 2024-06-03T21:20:12 doid-ncit_disease togoid-config config/doid-ncit_disease convert -> 2024-05-25T17:17:12 doid-ncit_disease +> 2024-06-03T21:20:12 doid-ncit_disease ### Update TTL for doid-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-omim_phenotype.ttl is older than output/tsv/doid-omim_phenotype.tsv ## Convert output/tsv/doid-omim_phenotype.tsv => output/ttl/doid-omim_phenotype.ttl -< 2024-05-25T17:17:12 doid-omim_phenotype +< 2024-06-03T21:20:12 doid-omim_phenotype togoid-config config/doid-omim_phenotype convert -> 2024-05-25T17:17:12 doid-omim_phenotype +> 2024-06-03T21:20:12 doid-omim_phenotype ### Update TTL for ensembl_gene-affy_probeset if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-affy_probeset.ttl is older than output/tsv/ensembl_gene-affy_probeset.tsv ## Convert output/tsv/ensembl_gene-affy_probeset.tsv => output/ttl/ensembl_gene-affy_probeset.ttl -< 2024-05-25T17:17:12 ensembl_gene-affy_probeset +< 2024-06-03T21:20:12 ensembl_gene-affy_probeset togoid-config config/ensembl_gene-affy_probeset convert -> 2024-05-25T17:17:13 ensembl_gene-affy_probeset +> 2024-06-03T21:20:13 ensembl_gene-affy_probeset ### Update TTL for ensembl_gene-ensembl_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ensembl_protein.ttl is older than output/tsv/ensembl_gene-ensembl_protein.tsv ## Convert output/tsv/ensembl_gene-ensembl_protein.tsv => output/ttl/ensembl_gene-ensembl_protein.ttl -< 2024-05-25T17:17:13 ensembl_gene-ensembl_protein +< 2024-06-03T21:20:13 ensembl_gene-ensembl_protein togoid-config config/ensembl_gene-ensembl_protein convert -> 2024-05-25T17:19:27 ensembl_gene-ensembl_protein +> 2024-06-03T21:22:17 ensembl_gene-ensembl_protein ### Update TTL for ensembl_gene-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ensembl_transcript.ttl is older than output/tsv/ensembl_gene-ensembl_transcript.tsv ## Convert output/tsv/ensembl_gene-ensembl_transcript.tsv => output/ttl/ensembl_gene-ensembl_transcript.ttl -< 2024-05-25T17:19:27 ensembl_gene-ensembl_transcript +< 2024-06-03T21:22:17 ensembl_gene-ensembl_transcript togoid-config config/ensembl_gene-ensembl_transcript convert -> 2024-05-25T17:22:07 ensembl_gene-ensembl_transcript +> 2024-06-03T21:24:59 ensembl_gene-ensembl_transcript ### Update TTL for ensembl_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-hgnc.ttl is older than output/tsv/ensembl_gene-hgnc.tsv ## Convert output/tsv/ensembl_gene-hgnc.tsv => output/ttl/ensembl_gene-hgnc.ttl -< 2024-05-25T17:22:07 ensembl_gene-hgnc +< 2024-06-03T21:24:59 ensembl_gene-hgnc togoid-config config/ensembl_gene-hgnc convert -> 2024-05-25T17:22:07 ensembl_gene-hgnc +> 2024-06-03T21:25:00 ensembl_gene-hgnc ### Update TTL for ensembl_gene-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ncbigene.ttl is older than output/tsv/ensembl_gene-ncbigene.tsv ## Convert output/tsv/ensembl_gene-ncbigene.tsv => output/ttl/ensembl_gene-ncbigene.ttl -< 2024-05-25T17:22:07 ensembl_gene-ncbigene +< 2024-06-03T21:25:00 ensembl_gene-ncbigene togoid-config config/ensembl_gene-ncbigene convert -> 2024-05-25T17:24:34 ensembl_gene-ncbigene +> 2024-06-03T21:27:18 ensembl_gene-ncbigene ### Update TTL for ensembl_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-uniprot.ttl is older than output/tsv/ensembl_gene-uniprot.tsv ## Convert output/tsv/ensembl_gene-uniprot.tsv => output/ttl/ensembl_gene-uniprot.ttl -< 2024-05-25T17:24:34 ensembl_gene-uniprot +< 2024-06-03T21:27:18 ensembl_gene-uniprot togoid-config config/ensembl_gene-uniprot convert -> 2024-05-25T17:25:23 ensembl_gene-uniprot +> 2024-06-03T21:28:06 ensembl_gene-uniprot ### Update TTL for ensembl_protein-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_protein-ensembl_transcript.ttl is older than output/tsv/ensembl_protein-ensembl_transcript.tsv ## Convert output/tsv/ensembl_protein-ensembl_transcript.tsv => output/ttl/ensembl_protein-ensembl_transcript.ttl -< 2024-05-25T17:25:23 ensembl_protein-ensembl_transcript +< 2024-06-03T21:28:06 ensembl_protein-ensembl_transcript togoid-config config/ensembl_protein-ensembl_transcript convert -> 2024-05-25T17:27:30 ensembl_protein-ensembl_transcript +> 2024-06-03T21:30:12 ensembl_protein-ensembl_transcript ### Update TTL for ensembl_transcript-affy_probeset if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-affy_probeset.ttl is older than output/tsv/ensembl_transcript-affy_probeset.tsv ## Convert output/tsv/ensembl_transcript-affy_probeset.tsv => output/ttl/ensembl_transcript-affy_probeset.ttl -< 2024-05-25T17:27:30 ensembl_transcript-affy_probeset +< 2024-06-03T21:30:12 ensembl_transcript-affy_probeset togoid-config config/ensembl_transcript-affy_probeset convert -> 2024-05-25T17:27:32 ensembl_transcript-affy_probeset +> 2024-06-03T21:30:15 ensembl_transcript-affy_probeset ### Update TTL for ensembl_transcript-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-go.ttl is older than output/tsv/ensembl_transcript-go.tsv ## Convert output/tsv/ensembl_transcript-go.tsv => output/ttl/ensembl_transcript-go.ttl -< 2024-05-25T17:27:32 ensembl_transcript-go +< 2024-06-03T21:30:15 ensembl_transcript-go togoid-config config/ensembl_transcript-go convert -> 2024-05-25T17:39:49 ensembl_transcript-go +> 2024-06-03T21:42:15 ensembl_transcript-go ### Update TTL for ensembl_transcript-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-hgnc.ttl is older than output/tsv/ensembl_transcript-hgnc.tsv ## Convert output/tsv/ensembl_transcript-hgnc.tsv => output/ttl/ensembl_transcript-hgnc.ttl -< 2024-05-25T17:39:49 ensembl_transcript-hgnc +< 2024-06-03T21:42:15 ensembl_transcript-hgnc togoid-config config/ensembl_transcript-hgnc convert -> 2024-05-25T17:39:51 ensembl_transcript-hgnc +> 2024-06-03T21:42:17 ensembl_transcript-hgnc ### Update TTL for ensembl_transcript-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-refseq_rna.ttl is older than output/tsv/ensembl_transcript-refseq_rna.tsv ## Convert output/tsv/ensembl_transcript-refseq_rna.tsv => output/ttl/ensembl_transcript-refseq_rna.ttl -< 2024-05-25T17:39:51 ensembl_transcript-refseq_rna +< 2024-06-03T21:42:17 ensembl_transcript-refseq_rna togoid-config config/ensembl_transcript-refseq_rna convert -> 2024-05-25T17:47:58 ensembl_transcript-refseq_rna +> 2024-06-03T21:50:25 ensembl_transcript-refseq_rna ### Update TTL for gea-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/gea-bioproject.ttl is older than output/tsv/gea-bioproject.tsv ## Convert output/tsv/gea-bioproject.tsv => output/ttl/gea-bioproject.ttl -< 2024-05-25T17:47:58 gea-bioproject +< 2024-06-03T21:50:25 gea-bioproject togoid-config config/gea-bioproject convert -> 2024-05-25T17:47:58 gea-bioproject +> 2024-06-03T21:50:25 gea-bioproject ### Update TTL for gea-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/gea-biosample.ttl is older than output/tsv/gea-biosample.tsv ## Convert output/tsv/gea-biosample.tsv => output/ttl/gea-biosample.ttl -< 2024-05-25T17:47:58 gea-biosample +< 2024-06-03T21:50:25 gea-biosample togoid-config config/gea-biosample convert -> 2024-05-25T17:47:58 gea-biosample +> 2024-06-03T21:50:25 gea-biosample ### Update TTL for glytoucan-doid if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/glytoucan-doid.ttl is newer than output/tsv/glytoucan-doid.tsv # => Preserving output/ttl/glytoucan-doid.ttl ### Update TTL for glytoucan-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/glytoucan-ncbigene.ttl is older than output/tsv/glytoucan-ncbigene.tsv ## Convert output/tsv/glytoucan-ncbigene.tsv => output/ttl/glytoucan-ncbigene.ttl -< 2024-05-25T17:47:58 glytoucan-ncbigene +< 2024-06-03T21:50:26 glytoucan-ncbigene togoid-config config/glytoucan-ncbigene convert -> 2024-05-25T17:47:58 glytoucan-ncbigene +> 2024-06-03T21:50:26 glytoucan-ncbigene ### Update TTL for glytoucan-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/glytoucan-uniprot.ttl is older than output/tsv/glytoucan-uniprot.tsv ## Convert output/tsv/glytoucan-uniprot.tsv => output/ttl/glytoucan-uniprot.ttl -< 2024-05-25T17:47:58 glytoucan-uniprot +< 2024-06-03T21:50:26 glytoucan-uniprot togoid-config config/glytoucan-uniprot convert -> 2024-05-25T17:47:59 glytoucan-uniprot +> 2024-06-03T21:50:26 glytoucan-uniprot ### Update TTL for hgnc-ccds if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-ccds.ttl is older than output/tsv/hgnc-ccds.tsv ## Convert output/tsv/hgnc-ccds.tsv => output/ttl/hgnc-ccds.ttl -< 2024-05-25T17:47:59 hgnc-ccds +< 2024-06-03T21:50:26 hgnc-ccds togoid-config config/hgnc-ccds convert -> 2024-05-25T17:47:59 hgnc-ccds +> 2024-06-03T21:50:27 hgnc-ccds ### Update TTL for hgnc-ec if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-ec.ttl is older than output/tsv/hgnc-ec.tsv ## Convert output/tsv/hgnc-ec.tsv => output/ttl/hgnc-ec.ttl -< 2024-05-25T17:47:59 hgnc-ec +< 2024-06-03T21:50:27 hgnc-ec togoid-config config/hgnc-ec convert -> 2024-05-25T17:48:00 hgnc-ec +> 2024-06-03T21:50:27 hgnc-ec ### Update TTL for hgnc-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-ensembl_gene.ttl is older than output/tsv/hgnc-ensembl_gene.tsv ## Convert output/tsv/hgnc-ensembl_gene.tsv => output/ttl/hgnc-ensembl_gene.ttl -< 2024-05-25T17:48:00 hgnc-ensembl_gene +< 2024-06-03T21:50:27 hgnc-ensembl_gene togoid-config config/hgnc-ensembl_gene convert -> 2024-05-25T17:48:00 hgnc-ensembl_gene +> 2024-06-03T21:50:28 hgnc-ensembl_gene ### Update TTL for hgnc-hgnc_symbol if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-hgnc_symbol.ttl is older than output/tsv/hgnc-hgnc_symbol.tsv ## Convert output/tsv/hgnc-hgnc_symbol.tsv => output/ttl/hgnc-hgnc_symbol.ttl -< 2024-05-25T17:48:00 hgnc-hgnc_symbol +< 2024-06-03T21:50:28 hgnc-hgnc_symbol togoid-config config/hgnc-hgnc_symbol convert -> 2024-05-25T17:48:00 hgnc-hgnc_symbol +> 2024-06-03T21:50:28 hgnc-hgnc_symbol ### Update TTL for hgnc-insdc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-insdc.ttl is older than output/tsv/hgnc-insdc.tsv ## Convert output/tsv/hgnc-insdc.tsv => output/ttl/hgnc-insdc.ttl -< 2024-05-25T17:48:00 hgnc-insdc +< 2024-06-03T21:50:28 hgnc-insdc togoid-config config/hgnc-insdc convert -> 2024-05-25T17:48:01 hgnc-insdc +> 2024-06-03T21:50:28 hgnc-insdc ### Update TTL for hgnc-lrg if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-lrg.ttl is older than output/tsv/hgnc-lrg.tsv ## Convert output/tsv/hgnc-lrg.tsv => output/ttl/hgnc-lrg.ttl -< 2024-05-25T17:48:01 hgnc-lrg +< 2024-06-03T21:50:28 hgnc-lrg togoid-config config/hgnc-lrg convert -> 2024-05-25T17:48:01 hgnc-lrg +> 2024-06-03T21:50:29 hgnc-lrg ### Update TTL for hgnc-mgi_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-mgi_gene.ttl is older than output/tsv/hgnc-mgi_gene.tsv ## Convert output/tsv/hgnc-mgi_gene.tsv => output/ttl/hgnc-mgi_gene.ttl -< 2024-05-25T17:48:01 hgnc-mgi_gene +< 2024-06-03T21:50:29 hgnc-mgi_gene togoid-config config/hgnc-mgi_gene convert -> 2024-05-25T17:48:01 hgnc-mgi_gene +> 2024-06-03T21:50:29 hgnc-mgi_gene ### Update TTL for hgnc-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-mirbase.ttl is older than output/tsv/hgnc-mirbase.tsv ## Convert output/tsv/hgnc-mirbase.tsv => output/ttl/hgnc-mirbase.ttl -< 2024-05-25T17:48:01 hgnc-mirbase +< 2024-06-03T21:50:29 hgnc-mirbase togoid-config config/hgnc-mirbase convert -> 2024-05-25T17:48:02 hgnc-mirbase +> 2024-06-03T21:50:29 hgnc-mirbase ### Update TTL for hgnc-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-ncbigene.ttl is older than output/tsv/hgnc-ncbigene.tsv ## Convert output/tsv/hgnc-ncbigene.tsv => output/ttl/hgnc-ncbigene.ttl -< 2024-05-25T17:48:02 hgnc-ncbigene +< 2024-06-03T21:50:29 hgnc-ncbigene togoid-config config/hgnc-ncbigene convert -> 2024-05-25T17:48:02 hgnc-ncbigene +> 2024-06-03T21:50:30 hgnc-ncbigene ### Update TTL for hgnc-omim_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-omim_gene.ttl is older than output/tsv/hgnc-omim_gene.tsv ## Convert output/tsv/hgnc-omim_gene.tsv => output/ttl/hgnc-omim_gene.ttl -< 2024-05-25T17:48:02 hgnc-omim_gene +< 2024-06-03T21:50:30 hgnc-omim_gene togoid-config config/hgnc-omim_gene convert -> 2024-05-25T17:48:02 hgnc-omim_gene +> 2024-06-03T21:50:30 hgnc-omim_gene ### Update TTL for hgnc-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-pubmed.ttl is older than output/tsv/hgnc-pubmed.tsv ## Convert output/tsv/hgnc-pubmed.tsv => output/ttl/hgnc-pubmed.ttl -< 2024-05-25T17:48:03 hgnc-pubmed +< 2024-06-03T21:50:30 hgnc-pubmed togoid-config config/hgnc-pubmed convert -> 2024-05-25T17:48:03 hgnc-pubmed +> 2024-06-03T21:50:31 hgnc-pubmed ### Update TTL for hgnc-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-refseq_rna.ttl is older than output/tsv/hgnc-refseq_rna.tsv ## Convert output/tsv/hgnc-refseq_rna.tsv => output/ttl/hgnc-refseq_rna.ttl -< 2024-05-25T17:48:03 hgnc-refseq_rna +< 2024-06-03T21:50:31 hgnc-refseq_rna togoid-config config/hgnc-refseq_rna convert -> 2024-05-25T17:48:03 hgnc-refseq_rna +> 2024-06-03T21:50:31 hgnc-refseq_rna ### Update TTL for hgnc-rgd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-rgd.ttl is older than output/tsv/hgnc-rgd.tsv ## Convert output/tsv/hgnc-rgd.tsv => output/ttl/hgnc-rgd.ttl -< 2024-05-25T17:48:03 hgnc-rgd +< 2024-06-03T21:50:31 hgnc-rgd togoid-config config/hgnc-rgd convert -> 2024-05-25T17:48:04 hgnc-rgd +> 2024-06-03T21:50:32 hgnc-rgd ### Update TTL for hgnc-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hgnc-uniprot.ttl is older than output/tsv/hgnc-uniprot.tsv ## Convert output/tsv/hgnc-uniprot.tsv => output/ttl/hgnc-uniprot.ttl -< 2024-05-25T17:48:04 hgnc-uniprot +< 2024-06-03T21:50:32 hgnc-uniprot togoid-config config/hgnc-uniprot convert -> 2024-05-25T17:48:04 hgnc-uniprot +> 2024-06-03T21:50:32 hgnc-uniprot ### Update TTL for hmdb-chebi if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/hmdb-chebi.ttl is newer than output/tsv/hmdb-chebi.tsv # => Preserving output/ttl/hmdb-chebi.ttl @@ -6068,9 +6205,9 @@ togoid-config config/hgnc-uniprot convert ### Update TTL for hp_inheritance-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hp_inheritance-omim_phenotype.ttl is older than output/tsv/hp_inheritance-omim_phenotype.tsv ## Convert output/tsv/hp_inheritance-omim_phenotype.tsv => output/ttl/hp_inheritance-omim_phenotype.ttl -< 2024-05-25T17:48:04 hp_inheritance-omim_phenotype +< 2024-06-03T21:50:32 hp_inheritance-omim_phenotype togoid-config config/hp_inheritance-omim_phenotype convert -> 2024-05-25T17:48:05 hp_inheritance-omim_phenotype +> 2024-06-03T21:50:32 hp_inheritance-omim_phenotype ### Update TTL for hp_phenotype-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/hp_phenotype-omim_phenotype.ttl is newer than output/tsv/hp_phenotype-omim_phenotype.tsv # => Preserving output/ttl/hp_phenotype-omim_phenotype.ttl @@ -6080,351 +6217,357 @@ togoid-config config/hp_inheritance-omim_phenotype convert ### Update TTL for insdc-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc-bioproject.ttl is older than output/tsv/insdc-bioproject.tsv ## Convert output/tsv/insdc-bioproject.tsv => output/ttl/insdc-bioproject.ttl -< 2024-05-25T17:48:05 insdc-bioproject +< 2024-06-03T21:50:32 insdc-bioproject togoid-config config/insdc-bioproject convert -> 2024-05-25T17:57:09 insdc-bioproject +> 2024-06-03T21:59:42 insdc-bioproject ### Update TTL for insdc-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc-biosample.ttl is older than output/tsv/insdc-biosample.tsv ## Convert output/tsv/insdc-biosample.tsv => output/ttl/insdc-biosample.ttl -< 2024-05-25T17:57:09 insdc-biosample +< 2024-06-03T21:59:42 insdc-biosample togoid-config config/insdc-biosample convert -> 2024-05-25T18:35:34 insdc-biosample +> 2024-06-03T22:40:34 insdc-biosample ### Update TTL for insdc_master-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc_master-bioproject.ttl is older than output/tsv/insdc_master-bioproject.tsv ## Convert output/tsv/insdc_master-bioproject.tsv => output/ttl/insdc_master-bioproject.ttl -< 2024-05-25T18:35:34 insdc_master-bioproject +< 2024-06-03T22:40:34 insdc_master-bioproject togoid-config config/insdc_master-bioproject convert -> 2024-05-25T18:35:47 insdc_master-bioproject +> 2024-06-03T22:40:46 insdc_master-bioproject ### Update TTL for insdc_master-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc_master-biosample.ttl is older than output/tsv/insdc_master-biosample.tsv ## Convert output/tsv/insdc_master-biosample.tsv => output/ttl/insdc_master-biosample.ttl -< 2024-05-25T18:35:47 insdc_master-biosample +< 2024-06-03T22:40:46 insdc_master-biosample togoid-config config/insdc_master-biosample convert -> 2024-05-25T18:36:01 insdc_master-biosample -### Update TTL for interpro-go if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-go.ttl is newer than output/tsv/interpro-go.tsv -# => Preserving output/ttl/interpro-go.ttl -### Update TTL for interpro-pdb if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-pdb.ttl is newer than output/tsv/interpro-pdb.tsv -# => Preserving output/ttl/interpro-pdb.ttl -### Update TTL for interpro-pfam if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-pfam.ttl is newer than output/tsv/interpro-pfam.tsv -# => Preserving output/ttl/interpro-pfam.ttl -### Update TTL for interpro-prosite if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-prosite.ttl is newer than output/tsv/interpro-prosite.tsv -# => Preserving output/ttl/interpro-prosite.ttl -### Update TTL for interpro-pubmed if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-pubmed.ttl is newer than output/tsv/interpro-pubmed.tsv -# => Preserving output/ttl/interpro-pubmed.ttl -### Update TTL for interpro-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-reactome_pathway.ttl is newer than output/tsv/interpro-reactome_pathway.tsv -# => Preserving output/ttl/interpro-reactome_pathway.ttl -### Update TTL for interpro-smart if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-smart.ttl is newer than output/tsv/interpro-smart.tsv -# => Preserving output/ttl/interpro-smart.ttl -### Update TTL for interpro-uniprot if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/interpro-uniprot.ttl is newer than output/tsv/interpro-uniprot.tsv -# => Preserving output/ttl/interpro-uniprot.ttl +> 2024-06-03T22:40:59 insdc_master-biosample +### Update TTL for interpro-go if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-go.ttl is older than output/tsv/interpro-go.tsv +## Convert output/tsv/interpro-go.tsv => output/ttl/interpro-go.ttl +< 2024-06-03T22:40:59 interpro-go +togoid-config config/interpro-go convert +> 2024-06-03T22:40:59 interpro-go +### Update TTL for interpro-pdb if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-pdb.ttl is older than output/tsv/interpro-pdb.tsv +## Convert output/tsv/interpro-pdb.tsv => output/ttl/interpro-pdb.ttl +< 2024-06-03T22:40:59 interpro-pdb +togoid-config config/interpro-pdb convert +> 2024-06-03T22:41:11 interpro-pdb +### Update TTL for interpro-pfam if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-pfam.ttl is older than output/tsv/interpro-pfam.tsv +## Convert output/tsv/interpro-pfam.tsv => output/ttl/interpro-pfam.ttl +< 2024-06-03T22:41:11 interpro-pfam +togoid-config config/interpro-pfam convert +> 2024-06-03T22:41:11 interpro-pfam +### Update TTL for interpro-prosite if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-prosite.ttl is older than output/tsv/interpro-prosite.tsv +## Convert output/tsv/interpro-prosite.tsv => output/ttl/interpro-prosite.ttl +< 2024-06-03T22:41:11 interpro-prosite +togoid-config config/interpro-prosite convert +> 2024-06-03T22:41:11 interpro-prosite +### Update TTL for interpro-pubmed if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-pubmed.ttl is older than output/tsv/interpro-pubmed.tsv +## Convert output/tsv/interpro-pubmed.tsv => output/ttl/interpro-pubmed.ttl +< 2024-06-03T22:41:11 interpro-pubmed +togoid-config config/interpro-pubmed convert +> 2024-06-03T22:41:13 interpro-pubmed +### Update TTL for interpro-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-reactome_pathway.ttl is older than output/tsv/interpro-reactome_pathway.tsv +## Convert output/tsv/interpro-reactome_pathway.tsv => output/ttl/interpro-reactome_pathway.ttl +< 2024-06-03T22:41:13 interpro-reactome_pathway +togoid-config config/interpro-reactome_pathway convert +> 2024-06-03T22:41:16 interpro-reactome_pathway +### Update TTL for interpro-smart if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-smart.ttl is older than output/tsv/interpro-smart.tsv +## Convert output/tsv/interpro-smart.tsv => output/ttl/interpro-smart.ttl +< 2024-06-03T22:41:16 interpro-smart +togoid-config config/interpro-smart convert +> 2024-06-03T22:41:17 interpro-smart +### Update TTL for interpro-uniprot if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/interpro-uniprot.ttl is older than output/tsv/interpro-uniprot.tsv +## Convert output/tsv/interpro-uniprot.tsv => output/ttl/interpro-uniprot.ttl +< 2024-06-03T22:41:17 interpro-uniprot +togoid-config config/interpro-uniprot convert +> 2024-06-04T03:22:30 interpro-uniprot ### Update TTL for jga_study-jga_dataset if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/jga_study-jga_dataset.ttl is older than output/tsv/jga_study-jga_dataset.tsv ## Convert output/tsv/jga_study-jga_dataset.tsv => output/ttl/jga_study-jga_dataset.ttl -< 2024-05-25T18:36:01 jga_study-jga_dataset +< 2024-06-04T03:22:30 jga_study-jga_dataset togoid-config config/jga_study-jga_dataset convert -> 2024-05-25T18:36:01 jga_study-jga_dataset +> 2024-06-04T03:22:31 jga_study-jga_dataset ### Update TTL for jga_study-nbdc_human_db if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/jga_study-nbdc_human_db.ttl is older than output/tsv/jga_study-nbdc_human_db.tsv ## Convert output/tsv/jga_study-nbdc_human_db.tsv => output/ttl/jga_study-nbdc_human_db.ttl -< 2024-05-25T18:36:01 jga_study-nbdc_human_db +< 2024-06-04T03:22:31 jga_study-nbdc_human_db togoid-config config/jga_study-nbdc_human_db convert -> 2024-05-25T18:36:01 jga_study-nbdc_human_db +> 2024-06-04T03:22:31 jga_study-nbdc_human_db ### Update TTL for jga_study-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/jga_study-pubmed.ttl is older than output/tsv/jga_study-pubmed.tsv ## Convert output/tsv/jga_study-pubmed.tsv => output/ttl/jga_study-pubmed.ttl -< 2024-05-25T18:36:01 jga_study-pubmed +< 2024-06-04T03:22:31 jga_study-pubmed togoid-config config/jga_study-pubmed convert -> 2024-05-25T18:36:01 jga_study-pubmed +> 2024-06-04T03:22:31 jga_study-pubmed ### Update TTL for lipidmaps-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/lipidmaps-chebi.ttl is older than output/tsv/lipidmaps-chebi.tsv ## Convert output/tsv/lipidmaps-chebi.tsv => output/ttl/lipidmaps-chebi.ttl -< 2024-05-25T18:36:01 lipidmaps-chebi +< 2024-06-04T03:22:31 lipidmaps-chebi togoid-config config/lipidmaps-chebi convert -> 2024-05-25T18:36:02 lipidmaps-chebi +> 2024-06-04T03:22:32 lipidmaps-chebi ### Update TTL for lipidmaps-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/lipidmaps-inchi_key.ttl is older than output/tsv/lipidmaps-inchi_key.tsv ## Convert output/tsv/lipidmaps-inchi_key.tsv => output/ttl/lipidmaps-inchi_key.ttl -< 2024-05-25T18:36:02 lipidmaps-inchi_key +< 2024-06-04T03:22:32 lipidmaps-inchi_key togoid-config config/lipidmaps-inchi_key convert -> 2024-05-25T18:36:02 lipidmaps-inchi_key +> 2024-06-04T03:22:33 lipidmaps-inchi_key ### Update TTL for lipidmaps-swisslipids if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/lipidmaps-swisslipids.ttl is older than output/tsv/lipidmaps-swisslipids.tsv ## Convert output/tsv/lipidmaps-swisslipids.tsv => output/ttl/lipidmaps-swisslipids.ttl -< 2024-05-25T18:36:02 lipidmaps-swisslipids +< 2024-06-04T03:22:33 lipidmaps-swisslipids togoid-config config/lipidmaps-swisslipids convert -> 2024-05-25T18:36:03 lipidmaps-swisslipids +> 2024-06-04T03:22:33 lipidmaps-swisslipids ### Update TTL for mbgd_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mbgd_gene-uniprot.ttl is older than output/tsv/mbgd_gene-uniprot.tsv ## Convert output/tsv/mbgd_gene-uniprot.tsv => output/ttl/mbgd_gene-uniprot.ttl -< 2024-05-25T18:36:03 mbgd_gene-uniprot +< 2024-06-04T03:22:33 mbgd_gene-uniprot togoid-config config/mbgd_gene-uniprot convert -> 2024-05-25T19:27:48 mbgd_gene-uniprot +> 2024-06-04T04:18:16 mbgd_gene-uniprot ### Update TTL for mbgd_organism-taxonomy if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mbgd_organism-taxonomy.ttl is older than output/tsv/mbgd_organism-taxonomy.tsv ## Convert output/tsv/mbgd_organism-taxonomy.tsv => output/ttl/mbgd_organism-taxonomy.ttl -< 2024-05-25T19:27:48 mbgd_organism-taxonomy +< 2024-06-04T04:18:16 mbgd_organism-taxonomy togoid-config config/mbgd_organism-taxonomy convert -> 2024-05-25T19:27:48 mbgd_organism-taxonomy +> 2024-06-04T04:18:16 mbgd_organism-taxonomy ### Update TTL for medgen-hp_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-hp_phenotype.ttl is older than output/tsv/medgen-hp_phenotype.tsv ## Convert output/tsv/medgen-hp_phenotype.tsv => output/ttl/medgen-hp_phenotype.ttl -< 2024-05-25T19:27:48 medgen-hp_phenotype +< 2024-06-04T04:18:16 medgen-hp_phenotype togoid-config config/medgen-hp_phenotype convert -> 2024-05-25T19:27:49 medgen-hp_phenotype +> 2024-06-04T04:18:16 medgen-hp_phenotype ### Update TTL for medgen-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-mesh.ttl is older than output/tsv/medgen-mesh.tsv ## Convert output/tsv/medgen-mesh.tsv => output/ttl/medgen-mesh.ttl -< 2024-05-25T19:27:49 medgen-mesh +< 2024-06-04T04:18:16 medgen-mesh togoid-config config/medgen-mesh convert -> 2024-05-25T19:27:49 medgen-mesh +> 2024-06-04T04:18:17 medgen-mesh ### Update TTL for medgen-mondo if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-mondo.ttl is older than output/tsv/medgen-mondo.tsv ## Convert output/tsv/medgen-mondo.tsv => output/ttl/medgen-mondo.ttl -< 2024-05-25T19:27:49 medgen-mondo +< 2024-06-04T04:18:17 medgen-mondo togoid-config config/medgen-mondo convert -> 2024-05-25T19:27:49 medgen-mondo +> 2024-06-04T04:18:17 medgen-mondo ### Update TTL for medgen-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-ncbigene.ttl is older than output/tsv/medgen-ncbigene.tsv ## Convert output/tsv/medgen-ncbigene.tsv => output/ttl/medgen-ncbigene.ttl -< 2024-05-25T19:27:49 medgen-ncbigene +< 2024-06-04T04:18:17 medgen-ncbigene togoid-config config/medgen-ncbigene convert -> 2024-05-25T19:27:50 medgen-ncbigene +> 2024-06-04T04:18:17 medgen-ncbigene ### Update TTL for medgen-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-omim_phenotype.ttl is older than output/tsv/medgen-omim_phenotype.tsv ## Convert output/tsv/medgen-omim_phenotype.tsv => output/ttl/medgen-omim_phenotype.ttl -< 2024-05-25T19:27:50 medgen-omim_phenotype +< 2024-06-04T04:18:17 medgen-omim_phenotype togoid-config config/medgen-omim_phenotype convert -> 2024-05-25T19:27:50 medgen-omim_phenotype +> 2024-06-04T04:18:18 medgen-omim_phenotype ### Update TTL for medgen-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/medgen-orphanet_phenotype.ttl is older than output/tsv/medgen-orphanet_phenotype.tsv ## Convert output/tsv/medgen-orphanet_phenotype.tsv => output/ttl/medgen-orphanet_phenotype.ttl -< 2024-05-25T19:27:50 medgen-orphanet_phenotype +< 2024-06-04T04:18:18 medgen-orphanet_phenotype togoid-config config/medgen-orphanet_phenotype convert -> 2024-05-25T19:27:50 medgen-orphanet_phenotype +> 2024-06-04T04:18:18 medgen-orphanet_phenotype ### Update TTL for mgi_gene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-ensembl_gene.ttl is older than output/tsv/mgi_gene-ensembl_gene.tsv ## Convert output/tsv/mgi_gene-ensembl_gene.tsv => output/ttl/mgi_gene-ensembl_gene.ttl -< 2024-05-25T19:27:50 mgi_gene-ensembl_gene +< 2024-06-04T04:18:18 mgi_gene-ensembl_gene togoid-config config/mgi_gene-ensembl_gene convert -> 2024-05-25T19:27:51 mgi_gene-ensembl_gene +> 2024-06-04T04:18:19 mgi_gene-ensembl_gene ### Update TTL for mgi_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-hgnc.ttl is older than output/tsv/mgi_gene-hgnc.tsv ## Convert output/tsv/mgi_gene-hgnc.tsv => output/ttl/mgi_gene-hgnc.ttl -< 2024-05-25T19:27:51 mgi_gene-hgnc +< 2024-06-04T04:18:19 mgi_gene-hgnc togoid-config config/mgi_gene-hgnc convert -> 2024-05-25T19:27:51 mgi_gene-hgnc +> 2024-06-04T04:18:19 mgi_gene-hgnc ### Update TTL for mgi_gene-mgi_allele if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-mgi_allele.ttl is older than output/tsv/mgi_gene-mgi_allele.tsv ## Convert output/tsv/mgi_gene-mgi_allele.tsv => output/ttl/mgi_gene-mgi_allele.ttl -< 2024-05-25T19:27:51 mgi_gene-mgi_allele +< 2024-06-04T04:18:19 mgi_gene-mgi_allele togoid-config config/mgi_gene-mgi_allele convert -> 2024-05-25T19:27:52 mgi_gene-mgi_allele +> 2024-06-04T04:18:20 mgi_gene-mgi_allele ### Update TTL for mgi_gene-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-ncbigene.ttl is older than output/tsv/mgi_gene-ncbigene.tsv ## Convert output/tsv/mgi_gene-ncbigene.tsv => output/ttl/mgi_gene-ncbigene.ttl -< 2024-05-25T19:27:52 mgi_gene-ncbigene +< 2024-06-04T04:18:20 mgi_gene-ncbigene togoid-config config/mgi_gene-ncbigene convert -> 2024-05-25T19:27:53 mgi_gene-ncbigene +> 2024-06-04T04:18:21 mgi_gene-ncbigene ### Update TTL for mgi_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-uniprot.ttl is older than output/tsv/mgi_gene-uniprot.tsv ## Convert output/tsv/mgi_gene-uniprot.tsv => output/ttl/mgi_gene-uniprot.ttl -< 2024-05-25T19:27:53 mgi_gene-uniprot +< 2024-06-04T04:18:21 mgi_gene-uniprot togoid-config config/mgi_gene-uniprot convert -> 2024-05-25T19:27:54 mgi_gene-uniprot +> 2024-06-04T04:18:22 mgi_gene-uniprot ### Update TTL for mgi_genotype-doid if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-doid.ttl is older than output/tsv/mgi_genotype-doid.tsv ## Convert output/tsv/mgi_genotype-doid.tsv => output/ttl/mgi_genotype-doid.ttl -< 2024-05-25T19:27:54 mgi_genotype-doid +< 2024-06-04T04:18:22 mgi_genotype-doid togoid-config config/mgi_genotype-doid convert -> 2024-05-25T19:27:54 mgi_genotype-doid +> 2024-06-04T04:18:22 mgi_genotype-doid ### Update TTL for mgi_genotype-mgi_allele if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-mgi_allele.ttl is older than output/tsv/mgi_genotype-mgi_allele.tsv ## Convert output/tsv/mgi_genotype-mgi_allele.tsv => output/ttl/mgi_genotype-mgi_allele.ttl -< 2024-05-25T19:27:54 mgi_genotype-mgi_allele +< 2024-06-04T04:18:22 mgi_genotype-mgi_allele togoid-config config/mgi_genotype-mgi_allele convert -> 2024-05-25T19:27:55 mgi_genotype-mgi_allele +> 2024-06-04T04:18:23 mgi_genotype-mgi_allele ### Update TTL for mgi_genotype-mp if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-mp.ttl is older than output/tsv/mgi_genotype-mp.tsv ## Convert output/tsv/mgi_genotype-mp.tsv => output/ttl/mgi_genotype-mp.ttl -< 2024-05-25T19:27:56 mgi_genotype-mp +< 2024-06-04T04:18:23 mgi_genotype-mp togoid-config config/mgi_genotype-mp convert -> 2024-05-25T19:27:59 mgi_genotype-mp -### Update TTL for mondo-doid if check_ttl_filesize false or check_ttl_timestamp true -# File output/ttl/mondo-doid.ttl is older than output/tsv/mondo-doid.tsv -## Convert output/tsv/mondo-doid.tsv => output/ttl/mondo-doid.ttl -< 2024-05-25T19:27:59 mondo-doid -togoid-config config/mondo-doid convert -> 2024-05-25T19:27:59 mondo-doid -### Update TTL for mondo-hp_phenotype if check_ttl_filesize false or check_ttl_timestamp true -# File output/ttl/mondo-hp_phenotype.ttl is older than output/tsv/mondo-hp_phenotype.tsv -## Convert output/tsv/mondo-hp_phenotype.tsv => output/ttl/mondo-hp_phenotype.ttl -< 2024-05-25T19:27:59 mondo-hp_phenotype -togoid-config config/mondo-hp_phenotype convert -> 2024-05-25T19:28:00 mondo-hp_phenotype -### Update TTL for mondo-meddra if check_ttl_filesize false or check_ttl_timestamp true -# File output/ttl/mondo-meddra.ttl is older than output/tsv/mondo-meddra.tsv -## Convert output/tsv/mondo-meddra.tsv => output/ttl/mondo-meddra.ttl -< 2024-05-25T19:28:00 mondo-meddra -togoid-config config/mondo-meddra convert -> 2024-05-25T19:28:00 mondo-meddra -### Update TTL for mondo-mesh if check_ttl_filesize false or check_ttl_timestamp true -# File output/ttl/mondo-mesh.ttl is older than output/tsv/mondo-mesh.tsv -## Convert output/tsv/mondo-mesh.tsv => output/ttl/mondo-mesh.ttl -< 2024-05-25T19:28:00 mondo-mesh -togoid-config config/mondo-mesh convert -> 2024-05-25T19:28:00 mondo-mesh -### Update TTL for mondo-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true -# File output/ttl/mondo-omim_phenotype.ttl is older than output/tsv/mondo-omim_phenotype.tsv -## Convert output/tsv/mondo-omim_phenotype.tsv => output/ttl/mondo-omim_phenotype.ttl -< 2024-05-25T19:28:00 mondo-omim_phenotype -togoid-config config/mondo-omim_phenotype convert -> 2024-05-25T19:28:00 mondo-omim_phenotype -### Update TTL for mondo-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp true -# File output/ttl/mondo-orphanet_phenotype.ttl is older than output/tsv/mondo-orphanet_phenotype.tsv -## Convert output/tsv/mondo-orphanet_phenotype.tsv => output/ttl/mondo-orphanet_phenotype.ttl -< 2024-05-25T19:28:00 mondo-orphanet_phenotype -togoid-config config/mondo-orphanet_phenotype convert -> 2024-05-25T19:28:01 mondo-orphanet_phenotype +> 2024-06-04T04:18:27 mgi_genotype-mp +### Update TTL for mondo-doid if check_ttl_filesize false or check_ttl_timestamp false +# File output/ttl/mondo-doid.ttl is newer than output/tsv/mondo-doid.tsv +# => Preserving output/ttl/mondo-doid.ttl +### Update TTL for mondo-hp_phenotype if check_ttl_filesize false or check_ttl_timestamp false +# File output/ttl/mondo-hp_phenotype.ttl is newer than output/tsv/mondo-hp_phenotype.tsv +# => Preserving output/ttl/mondo-hp_phenotype.ttl +### Update TTL for mondo-meddra if check_ttl_filesize false or check_ttl_timestamp false +# File output/ttl/mondo-meddra.ttl is newer than output/tsv/mondo-meddra.tsv +# => Preserving output/ttl/mondo-meddra.ttl +### Update TTL for mondo-mesh if check_ttl_filesize false or check_ttl_timestamp false +# File output/ttl/mondo-mesh.ttl is newer than output/tsv/mondo-mesh.tsv +# => Preserving output/ttl/mondo-mesh.ttl +### Update TTL for mondo-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp false +# File output/ttl/mondo-omim_phenotype.ttl is newer than output/tsv/mondo-omim_phenotype.tsv +# => Preserving output/ttl/mondo-omim_phenotype.ttl +### Update TTL for mondo-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp false +# File output/ttl/mondo-orphanet_phenotype.ttl is newer than output/tsv/mondo-orphanet_phenotype.tsv +# => Preserving output/ttl/mondo-orphanet_phenotype.ttl ### Update TTL for nando-mondo if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/nando-mondo.ttl is older than output/tsv/nando-mondo.tsv ## Convert output/tsv/nando-mondo.tsv => output/ttl/nando-mondo.ttl -< 2024-05-25T19:28:01 nando-mondo +< 2024-06-04T04:18:27 nando-mondo togoid-config config/nando-mondo convert -> 2024-05-25T19:28:01 nando-mondo +> 2024-06-04T04:18:27 nando-mondo ### Update TTL for ncbigene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_gene.ttl is older than output/tsv/ncbigene-ensembl_gene.tsv ## Convert output/tsv/ncbigene-ensembl_gene.tsv => output/ttl/ncbigene-ensembl_gene.ttl -< 2024-05-25T19:28:01 ncbigene-ensembl_gene +< 2024-06-04T04:18:27 ncbigene-ensembl_gene togoid-config config/ncbigene-ensembl_gene convert -> 2024-05-25T19:29:30 ncbigene-ensembl_gene +> 2024-06-04T04:19:59 ncbigene-ensembl_gene ### Update TTL for ncbigene-ensembl_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_protein.ttl is older than output/tsv/ncbigene-ensembl_protein.tsv ## Convert output/tsv/ncbigene-ensembl_protein.tsv => output/ttl/ncbigene-ensembl_protein.ttl -< 2024-05-25T19:29:30 ncbigene-ensembl_protein +< 2024-06-04T04:19:59 ncbigene-ensembl_protein togoid-config config/ncbigene-ensembl_protein convert -> 2024-05-25T19:31:13 ncbigene-ensembl_protein +> 2024-06-04T04:21:49 ncbigene-ensembl_protein ### Update TTL for ncbigene-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_transcript.ttl is older than output/tsv/ncbigene-ensembl_transcript.tsv ## Convert output/tsv/ncbigene-ensembl_transcript.tsv => output/ttl/ncbigene-ensembl_transcript.ttl -< 2024-05-25T19:31:13 ncbigene-ensembl_transcript +< 2024-06-04T04:21:49 ncbigene-ensembl_transcript togoid-config config/ncbigene-ensembl_transcript convert -> 2024-05-25T19:33:04 ncbigene-ensembl_transcript +> 2024-06-04T04:23:50 ncbigene-ensembl_transcript ### Update TTL for ncbigene-flybase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-flybase_gene.ttl is older than output/tsv/ncbigene-flybase_gene.tsv ## Convert output/tsv/ncbigene-flybase_gene.tsv => output/ttl/ncbigene-flybase_gene.ttl -< 2024-05-25T19:33:04 ncbigene-flybase_gene +< 2024-06-04T04:23:50 ncbigene-flybase_gene togoid-config config/ncbigene-flybase_gene convert -> 2024-05-25T19:33:05 ncbigene-flybase_gene +> 2024-06-04T04:23:50 ncbigene-flybase_gene ### Update TTL for ncbigene-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-go.ttl is older than output/tsv/ncbigene-go.tsv ## Convert output/tsv/ncbigene-go.tsv => output/ttl/ncbigene-go.ttl -< 2024-05-25T19:33:05 ncbigene-go +< 2024-06-04T04:23:50 ncbigene-go togoid-config config/ncbigene-go convert -> 2024-05-25T19:49:26 ncbigene-go +> 2024-06-04T04:40:22 ncbigene-go ### Update TTL for ncbigene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-hgnc.ttl is older than output/tsv/ncbigene-hgnc.tsv ## Convert output/tsv/ncbigene-hgnc.tsv => output/ttl/ncbigene-hgnc.ttl -< 2024-05-25T19:49:26 ncbigene-hgnc +< 2024-06-04T04:40:22 ncbigene-hgnc togoid-config config/ncbigene-hgnc convert -> 2024-05-25T19:49:26 ncbigene-hgnc +> 2024-06-04T04:40:23 ncbigene-hgnc ### Update TTL for ncbigene-mgi_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-mgi_gene.ttl is older than output/tsv/ncbigene-mgi_gene.tsv ## Convert output/tsv/ncbigene-mgi_gene.tsv => output/ttl/ncbigene-mgi_gene.ttl -< 2024-05-25T19:49:26 ncbigene-mgi_gene +< 2024-06-04T04:40:23 ncbigene-mgi_gene togoid-config config/ncbigene-mgi_gene convert -> 2024-05-25T19:49:27 ncbigene-mgi_gene +> 2024-06-04T04:40:24 ncbigene-mgi_gene ### Update TTL for ncbigene-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-mirbase.ttl is older than output/tsv/ncbigene-mirbase.tsv ## Convert output/tsv/ncbigene-mirbase.tsv => output/ttl/ncbigene-mirbase.ttl -< 2024-05-25T19:49:27 ncbigene-mirbase +< 2024-06-04T04:40:24 ncbigene-mirbase togoid-config config/ncbigene-mirbase convert -> 2024-05-25T19:49:27 ncbigene-mirbase +> 2024-06-04T04:40:24 ncbigene-mirbase ### Update TTL for ncbigene-omim_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-omim_gene.ttl is older than output/tsv/ncbigene-omim_gene.tsv ## Convert output/tsv/ncbigene-omim_gene.tsv => output/ttl/ncbigene-omim_gene.ttl -< 2024-05-25T19:49:27 ncbigene-omim_gene +< 2024-06-04T04:40:24 ncbigene-omim_gene togoid-config config/ncbigene-omim_gene convert -> 2024-05-25T19:49:28 ncbigene-omim_gene +> 2024-06-04T04:40:25 ncbigene-omim_gene ### Update TTL for ncbigene-refseq_genomic if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_genomic.ttl is older than output/tsv/ncbigene-refseq_genomic.tsv ## Convert output/tsv/ncbigene-refseq_genomic.tsv => output/ttl/ncbigene-refseq_genomic.ttl -< 2024-05-25T19:49:28 ncbigene-refseq_genomic +< 2024-06-04T04:40:25 ncbigene-refseq_genomic togoid-config config/ncbigene-refseq_genomic convert -> 2024-05-25T19:49:30 ncbigene-refseq_genomic +> 2024-06-04T04:40:27 ncbigene-refseq_genomic ### Update TTL for ncbigene-refseq_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_protein.ttl is older than output/tsv/ncbigene-refseq_protein.tsv ## Convert output/tsv/ncbigene-refseq_protein.tsv => output/ttl/ncbigene-refseq_protein.ttl -< 2024-05-25T19:49:30 ncbigene-refseq_protein +< 2024-06-04T04:40:27 ncbigene-refseq_protein togoid-config config/ncbigene-refseq_protein convert -> 2024-05-25T20:01:48 ncbigene-refseq_protein +> 2024-06-04T04:53:05 ncbigene-refseq_protein ### Update TTL for ncbigene-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_rna.ttl is older than output/tsv/ncbigene-refseq_rna.tsv ## Convert output/tsv/ncbigene-refseq_rna.tsv => output/ttl/ncbigene-refseq_rna.ttl -< 2024-05-25T20:01:48 ncbigene-refseq_rna +< 2024-06-04T04:53:05 ncbigene-refseq_rna togoid-config config/ncbigene-refseq_rna convert -> 2024-05-25T20:12:20 ncbigene-refseq_rna +> 2024-06-04T05:03:36 ncbigene-refseq_rna ### Update TTL for ncbigene-rgd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-rgd.ttl is older than output/tsv/ncbigene-rgd.tsv ## Convert output/tsv/ncbigene-rgd.tsv => output/ttl/ncbigene-rgd.ttl -< 2024-05-25T20:12:20 ncbigene-rgd +< 2024-06-04T05:03:36 ncbigene-rgd togoid-config config/ncbigene-rgd convert -> 2024-05-25T20:12:21 ncbigene-rgd +> 2024-06-04T05:03:36 ncbigene-rgd ### Update TTL for ncbigene-sgd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-sgd.ttl is older than output/tsv/ncbigene-sgd.tsv ## Convert output/tsv/ncbigene-sgd.tsv => output/ttl/ncbigene-sgd.ttl -< 2024-05-25T20:12:21 ncbigene-sgd +< 2024-06-04T05:03:36 ncbigene-sgd togoid-config config/ncbigene-sgd convert -> 2024-05-25T20:12:21 ncbigene-sgd +> 2024-06-04T05:03:37 ncbigene-sgd ### Update TTL for ncbigene-tair if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-tair.ttl is older than output/tsv/ncbigene-tair.tsv ## Convert output/tsv/ncbigene-tair.tsv => output/ttl/ncbigene-tair.ttl -< 2024-05-25T20:12:21 ncbigene-tair +< 2024-06-04T05:03:37 ncbigene-tair togoid-config config/ncbigene-tair convert -> 2024-05-25T20:12:22 ncbigene-tair +> 2024-06-04T05:03:37 ncbigene-tair ### Update TTL for ncbigene-taxonomy if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-taxonomy.ttl is older than output/tsv/ncbigene-taxonomy.tsv ## Convert output/tsv/ncbigene-taxonomy.tsv => output/ttl/ncbigene-taxonomy.ttl -< 2024-05-25T20:12:22 ncbigene-taxonomy +< 2024-06-04T05:03:37 ncbigene-taxonomy togoid-config config/ncbigene-taxonomy convert -> 2024-05-25T20:20:29 ncbigene-taxonomy +> 2024-06-04T05:11:55 ncbigene-taxonomy ### Update TTL for ncbigene-vgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-vgnc.ttl is older than output/tsv/ncbigene-vgnc.tsv ## Convert output/tsv/ncbigene-vgnc.tsv => output/ttl/ncbigene-vgnc.ttl -< 2024-05-25T20:20:29 ncbigene-vgnc +< 2024-06-04T05:11:55 ncbigene-vgnc togoid-config config/ncbigene-vgnc convert -> 2024-05-25T20:20:30 ncbigene-vgnc +> 2024-06-04T05:11:56 ncbigene-vgnc ### Update TTL for ncbigene-wormbase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-wormbase_gene.ttl is older than output/tsv/ncbigene-wormbase_gene.tsv ## Convert output/tsv/ncbigene-wormbase_gene.tsv => output/ttl/ncbigene-wormbase_gene.ttl -< 2024-05-25T20:20:30 ncbigene-wormbase_gene +< 2024-06-04T05:11:56 ncbigene-wormbase_gene togoid-config config/ncbigene-wormbase_gene convert -> 2024-05-25T20:20:30 ncbigene-wormbase_gene +> 2024-06-04T05:11:57 ncbigene-wormbase_gene ### Update TTL for ncbigene-xenbase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-xenbase_gene.ttl is older than output/tsv/ncbigene-xenbase_gene.tsv ## Convert output/tsv/ncbigene-xenbase_gene.tsv => output/ttl/ncbigene-xenbase_gene.ttl -< 2024-05-25T20:20:30 ncbigene-xenbase_gene +< 2024-06-04T05:11:57 ncbigene-xenbase_gene togoid-config config/ncbigene-xenbase_gene convert -> 2024-05-25T20:20:31 ncbigene-xenbase_gene +> 2024-06-04T05:11:57 ncbigene-xenbase_gene ### Update TTL for ncbigene-zfin_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-zfin_gene.ttl is older than output/tsv/ncbigene-zfin_gene.tsv ## Convert output/tsv/ncbigene-zfin_gene.tsv => output/ttl/ncbigene-zfin_gene.ttl -< 2024-05-25T20:20:31 ncbigene-zfin_gene +< 2024-06-04T05:11:57 ncbigene-zfin_gene togoid-config config/ncbigene-zfin_gene convert -> 2024-05-25T20:20:31 ncbigene-zfin_gene +> 2024-06-04T05:11:58 ncbigene-zfin_gene ### Update TTL for ncit_disease-ncit_tissue if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncit_disease-ncit_tissue.ttl is older than output/tsv/ncit_disease-ncit_tissue.tsv ## Convert output/tsv/ncit_disease-ncit_tissue.tsv => output/ttl/ncit_disease-ncit_tissue.ttl -< 2024-05-25T20:20:31 ncit_disease-ncit_tissue +< 2024-06-04T05:11:58 ncit_disease-ncit_tissue togoid-config config/ncit_disease-ncit_tissue convert -> 2024-05-25T20:20:32 ncit_disease-ncit_tissue +> 2024-06-04T05:11:58 ncit_disease-ncit_tissue ### Update TTL for oma_protein-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/oma_protein-ensembl_gene.ttl is newer than output/tsv/oma_protein-ensembl_gene.tsv # => Preserving output/ttl/oma_protein-ensembl_gene.ttl @@ -6440,228 +6583,231 @@ togoid-config config/ncit_disease-ncit_tissue convert ### Update TTL for orphanet_gene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-ensembl_gene.ttl is older than output/tsv/orphanet_gene-ensembl_gene.tsv ## Convert output/tsv/orphanet_gene-ensembl_gene.tsv => output/ttl/orphanet_gene-ensembl_gene.ttl -< 2024-05-25T20:20:32 orphanet_gene-ensembl_gene +< 2024-06-04T05:11:58 orphanet_gene-ensembl_gene togoid-config config/orphanet_gene-ensembl_gene convert -> 2024-05-25T20:20:32 orphanet_gene-ensembl_gene +> 2024-06-04T05:11:59 orphanet_gene-ensembl_gene ### Update TTL for orphanet_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-hgnc.ttl is older than output/tsv/orphanet_gene-hgnc.tsv ## Convert output/tsv/orphanet_gene-hgnc.tsv => output/ttl/orphanet_gene-hgnc.ttl -< 2024-05-25T20:20:32 orphanet_gene-hgnc +< 2024-06-04T05:11:59 orphanet_gene-hgnc togoid-config config/orphanet_gene-hgnc convert -> 2024-05-25T20:20:32 orphanet_gene-hgnc +> 2024-06-04T05:11:59 orphanet_gene-hgnc ### Update TTL for orphanet_gene-omim_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-omim_gene.ttl is older than output/tsv/orphanet_gene-omim_gene.tsv ## Convert output/tsv/orphanet_gene-omim_gene.tsv => output/ttl/orphanet_gene-omim_gene.ttl -< 2024-05-25T20:20:32 orphanet_gene-omim_gene +< 2024-06-04T05:11:59 orphanet_gene-omim_gene togoid-config config/orphanet_gene-omim_gene convert -> 2024-05-25T20:20:33 orphanet_gene-omim_gene +> 2024-06-04T05:11:59 orphanet_gene-omim_gene ### Update TTL for orphanet_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_gene-uniprot.ttl is older than output/tsv/orphanet_gene-uniprot.tsv ## Convert output/tsv/orphanet_gene-uniprot.tsv => output/ttl/orphanet_gene-uniprot.ttl -< 2024-05-25T20:20:33 orphanet_gene-uniprot +< 2024-06-04T05:11:59 orphanet_gene-uniprot togoid-config config/orphanet_gene-uniprot convert -> 2024-05-25T20:20:33 orphanet_gene-uniprot +> 2024-06-04T05:11:59 orphanet_gene-uniprot ### Update TTL for orphanet_phenotype-meddra if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-meddra.ttl is older than output/tsv/orphanet_phenotype-meddra.tsv ## Convert output/tsv/orphanet_phenotype-meddra.tsv => output/ttl/orphanet_phenotype-meddra.ttl -< 2024-05-25T20:20:33 orphanet_phenotype-meddra +< 2024-06-04T05:11:59 orphanet_phenotype-meddra togoid-config config/orphanet_phenotype-meddra convert -> 2024-05-25T20:20:33 orphanet_phenotype-meddra +> 2024-06-04T05:12:00 orphanet_phenotype-meddra ### Update TTL for orphanet_phenotype-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-mesh.ttl is older than output/tsv/orphanet_phenotype-mesh.tsv ## Convert output/tsv/orphanet_phenotype-mesh.tsv => output/ttl/orphanet_phenotype-mesh.ttl -< 2024-05-25T20:20:33 orphanet_phenotype-mesh +< 2024-06-04T05:12:00 orphanet_phenotype-mesh togoid-config config/orphanet_phenotype-mesh convert -> 2024-05-25T20:20:33 orphanet_phenotype-mesh +> 2024-06-04T05:12:00 orphanet_phenotype-mesh ### Update TTL for orphanet_phenotype-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-omim_phenotype.ttl is older than output/tsv/orphanet_phenotype-omim_phenotype.tsv ## Convert output/tsv/orphanet_phenotype-omim_phenotype.tsv => output/ttl/orphanet_phenotype-omim_phenotype.ttl -< 2024-05-25T20:20:33 orphanet_phenotype-omim_phenotype +< 2024-06-04T05:12:00 orphanet_phenotype-omim_phenotype togoid-config config/orphanet_phenotype-omim_phenotype convert -> 2024-05-25T20:20:34 orphanet_phenotype-omim_phenotype +> 2024-06-04T05:12:00 orphanet_phenotype-omim_phenotype ### Update TTL for orphanet_phenotype-orphanet_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/orphanet_phenotype-orphanet_gene.ttl is older than output/tsv/orphanet_phenotype-orphanet_gene.tsv ## Convert output/tsv/orphanet_phenotype-orphanet_gene.tsv => output/ttl/orphanet_phenotype-orphanet_gene.ttl -< 2024-05-25T20:20:34 orphanet_phenotype-orphanet_gene +< 2024-06-04T05:12:00 orphanet_phenotype-orphanet_gene togoid-config config/orphanet_phenotype-orphanet_gene convert -> 2024-05-25T20:20:34 orphanet_phenotype-orphanet_gene +> 2024-06-04T05:12:00 orphanet_phenotype-orphanet_gene ### Update TTL for pdb-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-go.ttl is older than output/tsv/pdb-go.tsv ## Convert output/tsv/pdb-go.tsv => output/ttl/pdb-go.ttl -< 2024-05-25T20:20:34 pdb-go +< 2024-06-04T05:12:00 pdb-go togoid-config config/pdb-go convert -> 2024-05-25T20:20:46 pdb-go +> 2024-06-04T05:12:13 pdb-go ### Update TTL for pdb-interpro if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-interpro.ttl is older than output/tsv/pdb-interpro.tsv ## Convert output/tsv/pdb-interpro.tsv => output/ttl/pdb-interpro.ttl -< 2024-05-25T20:20:46 pdb-interpro +< 2024-06-04T05:12:13 pdb-interpro togoid-config config/pdb-interpro convert -> 2024-05-25T20:20:51 pdb-interpro +> 2024-06-04T05:12:19 pdb-interpro ### Update TTL for pdb-pdb_ccd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-pdb_ccd.ttl is older than output/tsv/pdb-pdb_ccd.tsv ## Convert output/tsv/pdb-pdb_ccd.tsv => output/ttl/pdb-pdb_ccd.ttl -< 2024-05-25T20:20:51 pdb-pdb_ccd +< 2024-06-04T05:12:19 pdb-pdb_ccd togoid-config config/pdb-pdb_ccd convert -> 2024-05-25T20:20:55 pdb-pdb_ccd +> 2024-06-04T05:12:22 pdb-pdb_ccd ### Update TTL for pdb-pfam if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-pfam.ttl is older than output/tsv/pdb-pfam.tsv ## Convert output/tsv/pdb-pfam.tsv => output/ttl/pdb-pfam.ttl -< 2024-05-25T20:20:55 pdb-pfam +< 2024-06-04T05:12:22 pdb-pfam togoid-config config/pdb-pfam convert -> 2024-05-25T20:20:58 pdb-pfam +> 2024-06-04T05:12:25 pdb-pfam ### Update TTL for pdb-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pdb-uniprot.ttl is older than output/tsv/pdb-uniprot.tsv ## Convert output/tsv/pdb-uniprot.tsv => output/ttl/pdb-uniprot.ttl -< 2024-05-25T20:20:58 pdb-uniprot +< 2024-06-04T05:12:25 pdb-uniprot togoid-config config/pdb-uniprot convert -> 2024-05-25T20:21:01 pdb-uniprot -### Update TTL for prosite-prosite_prorule if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/prosite-prosite_prorule.ttl is newer than output/tsv/prosite-prosite_prorule.tsv -# => Preserving output/ttl/prosite-prosite_prorule.ttl +> 2024-06-04T05:12:28 pdb-uniprot +### Update TTL for prosite-prosite_prorule if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/prosite-prosite_prorule.ttl is older than output/tsv/prosite-prosite_prorule.tsv +## Convert output/tsv/prosite-prosite_prorule.tsv => output/ttl/prosite-prosite_prorule.ttl +< 2024-06-04T05:12:28 prosite-prosite_prorule +togoid-config config/prosite-prosite_prorule convert +> 2024-06-04T05:12:28 prosite-prosite_prorule ### Update TTL for pubchem_compound-atc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-atc.ttl is older than output/tsv/pubchem_compound-atc.tsv ## Convert output/tsv/pubchem_compound-atc.tsv => output/ttl/pubchem_compound-atc.ttl -< 2024-05-25T20:21:01 pubchem_compound-atc +< 2024-06-04T05:12:28 pubchem_compound-atc togoid-config config/pubchem_compound-atc convert -> 2024-05-25T20:21:01 pubchem_compound-atc +> 2024-06-04T05:12:28 pubchem_compound-atc ### Update TTL for pubchem_compound-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-chebi.ttl is older than output/tsv/pubchem_compound-chebi.tsv ## Convert output/tsv/pubchem_compound-chebi.tsv => output/ttl/pubchem_compound-chebi.ttl -< 2024-05-25T20:21:01 pubchem_compound-chebi +< 2024-06-04T05:12:28 pubchem_compound-chebi togoid-config config/pubchem_compound-chebi convert -> 2024-05-25T20:21:03 pubchem_compound-chebi +> 2024-06-04T05:12:30 pubchem_compound-chebi ### Update TTL for pubchem_compound-chembl_compound if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-chembl_compound.ttl is older than output/tsv/pubchem_compound-chembl_compound.tsv ## Convert output/tsv/pubchem_compound-chembl_compound.tsv => output/ttl/pubchem_compound-chembl_compound.ttl -< 2024-05-25T20:21:03 pubchem_compound-chembl_compound +< 2024-06-04T05:12:30 pubchem_compound-chembl_compound togoid-config config/pubchem_compound-chembl_compound convert -> 2024-05-25T20:21:24 pubchem_compound-chembl_compound +> 2024-06-04T05:12:50 pubchem_compound-chembl_compound ### Update TTL for pubchem_compound-drugbank if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-drugbank.ttl is older than output/tsv/pubchem_compound-drugbank.tsv ## Convert output/tsv/pubchem_compound-drugbank.tsv => output/ttl/pubchem_compound-drugbank.ttl -< 2024-05-25T20:21:24 pubchem_compound-drugbank +< 2024-06-04T05:12:50 pubchem_compound-drugbank togoid-config config/pubchem_compound-drugbank convert -> 2024-05-25T20:21:25 pubchem_compound-drugbank +> 2024-06-04T05:12:50 pubchem_compound-drugbank ### Update TTL for pubchem_compound-glytoucan if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-glytoucan.ttl is older than output/tsv/pubchem_compound-glytoucan.tsv ## Convert output/tsv/pubchem_compound-glytoucan.tsv => output/ttl/pubchem_compound-glytoucan.ttl -< 2024-05-25T20:21:25 pubchem_compound-glytoucan +< 2024-06-04T05:12:50 pubchem_compound-glytoucan togoid-config config/pubchem_compound-glytoucan convert -> 2024-05-25T20:21:25 pubchem_compound-glytoucan +> 2024-06-04T05:12:51 pubchem_compound-glytoucan ### Update TTL for pubchem_compound-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_compound-inchi_key.ttl is older than output/tsv/pubchem_compound-inchi_key.tsv ## Convert output/tsv/pubchem_compound-inchi_key.tsv => output/ttl/pubchem_compound-inchi_key.ttl -< 2024-05-25T20:21:25 pubchem_compound-inchi_key +< 2024-06-04T05:12:51 pubchem_compound-inchi_key togoid-config config/pubchem_compound-inchi_key convert -> 2024-05-25T21:02:27 pubchem_compound-inchi_key +> 2024-06-04T05:55:06 pubchem_compound-inchi_key ### Update TTL for pubchem_pathway-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-ncbigene.ttl is older than output/tsv/pubchem_pathway-ncbigene.tsv ## Convert output/tsv/pubchem_pathway-ncbigene.tsv => output/ttl/pubchem_pathway-ncbigene.ttl -< 2024-05-25T21:02:27 pubchem_pathway-ncbigene +< 2024-06-04T05:55:06 pubchem_pathway-ncbigene togoid-config config/pubchem_pathway-ncbigene convert -> 2024-05-25T21:02:27 pubchem_pathway-ncbigene +> 2024-06-04T05:55:06 pubchem_pathway-ncbigene ### Update TTL for pubchem_pathway-pathbank if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-pathbank.ttl is older than output/tsv/pubchem_pathway-pathbank.tsv ## Convert output/tsv/pubchem_pathway-pathbank.tsv => output/ttl/pubchem_pathway-pathbank.ttl -< 2024-05-25T21:02:27 pubchem_pathway-pathbank +< 2024-06-04T05:55:06 pubchem_pathway-pathbank togoid-config config/pubchem_pathway-pathbank convert -> 2024-05-25T21:02:28 pubchem_pathway-pathbank +> 2024-06-04T05:55:07 pubchem_pathway-pathbank ### Update TTL for pubchem_pathway-pubchem_compound if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-pubchem_compound.ttl is older than output/tsv/pubchem_pathway-pubchem_compound.tsv ## Convert output/tsv/pubchem_pathway-pubchem_compound.tsv => output/ttl/pubchem_pathway-pubchem_compound.ttl -< 2024-05-25T21:02:28 pubchem_pathway-pubchem_compound +< 2024-06-04T05:55:07 pubchem_pathway-pubchem_compound togoid-config config/pubchem_pathway-pubchem_compound convert -> 2024-05-25T21:02:38 pubchem_pathway-pubchem_compound +> 2024-06-04T05:55:17 pubchem_pathway-pubchem_compound ### Update TTL for pubchem_pathway-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-reactome_pathway.ttl is older than output/tsv/pubchem_pathway-reactome_pathway.tsv ## Convert output/tsv/pubchem_pathway-reactome_pathway.tsv => output/ttl/pubchem_pathway-reactome_pathway.ttl -< 2024-05-25T21:02:38 pubchem_pathway-reactome_pathway +< 2024-06-04T05:55:17 pubchem_pathway-reactome_pathway togoid-config config/pubchem_pathway-reactome_pathway convert -> 2024-05-25T21:02:38 pubchem_pathway-reactome_pathway +> 2024-06-04T05:55:17 pubchem_pathway-reactome_pathway ### Update TTL for pubchem_pathway-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-uniprot.ttl is older than output/tsv/pubchem_pathway-uniprot.tsv ## Convert output/tsv/pubchem_pathway-uniprot.tsv => output/ttl/pubchem_pathway-uniprot.ttl -< 2024-05-25T21:02:38 pubchem_pathway-uniprot +< 2024-06-04T05:55:17 pubchem_pathway-uniprot togoid-config config/pubchem_pathway-uniprot convert -> 2024-05-25T21:02:43 pubchem_pathway-uniprot +> 2024-06-04T05:55:23 pubchem_pathway-uniprot ### Update TTL for pubchem_pathway-wikipathways if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pubchem_pathway-wikipathways.ttl is older than output/tsv/pubchem_pathway-wikipathways.tsv ## Convert output/tsv/pubchem_pathway-wikipathways.tsv => output/ttl/pubchem_pathway-wikipathways.ttl -< 2024-05-25T21:02:43 pubchem_pathway-wikipathways +< 2024-06-04T05:55:23 pubchem_pathway-wikipathways togoid-config config/pubchem_pathway-wikipathways convert -> 2024-05-25T21:02:43 pubchem_pathway-wikipathways +> 2024-06-04T05:55:23 pubchem_pathway-wikipathways ### Update TTL for reactome_pathway-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-chebi.ttl is older than output/tsv/reactome_pathway-chebi.tsv ## Convert output/tsv/reactome_pathway-chebi.tsv => output/ttl/reactome_pathway-chebi.ttl -< 2024-05-25T21:02:43 reactome_pathway-chebi +< 2024-06-04T05:55:23 reactome_pathway-chebi togoid-config config/reactome_pathway-chebi convert -> 2024-05-25T21:02:45 reactome_pathway-chebi +> 2024-06-04T05:55:25 reactome_pathway-chebi ### Update TTL for reactome_pathway-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-go.ttl is older than output/tsv/reactome_pathway-go.tsv ## Convert output/tsv/reactome_pathway-go.tsv => output/ttl/reactome_pathway-go.ttl -< 2024-05-25T21:02:45 reactome_pathway-go +< 2024-06-04T05:55:25 reactome_pathway-go togoid-config config/reactome_pathway-go convert -> 2024-05-25T21:02:45 reactome_pathway-go +> 2024-06-04T05:55:26 reactome_pathway-go ### Update TTL for reactome_pathway-iuphar_ligand if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-iuphar_ligand.ttl is older than output/tsv/reactome_pathway-iuphar_ligand.tsv ## Convert output/tsv/reactome_pathway-iuphar_ligand.tsv => output/ttl/reactome_pathway-iuphar_ligand.ttl -< 2024-05-25T21:02:45 reactome_pathway-iuphar_ligand +< 2024-06-04T05:55:26 reactome_pathway-iuphar_ligand togoid-config config/reactome_pathway-iuphar_ligand convert -> 2024-05-25T21:02:46 reactome_pathway-iuphar_ligand +> 2024-06-04T05:55:26 reactome_pathway-iuphar_ligand ### Update TTL for reactome_pathway-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-mirbase.ttl is older than output/tsv/reactome_pathway-mirbase.tsv ## Convert output/tsv/reactome_pathway-mirbase.tsv => output/ttl/reactome_pathway-mirbase.ttl -< 2024-05-25T21:02:46 reactome_pathway-mirbase +< 2024-06-04T05:55:26 reactome_pathway-mirbase togoid-config config/reactome_pathway-mirbase convert -> 2024-05-25T21:02:46 reactome_pathway-mirbase +> 2024-06-04T05:55:26 reactome_pathway-mirbase ### Update TTL for reactome_pathway-reactome_reaction if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-reactome_reaction.ttl is older than output/tsv/reactome_pathway-reactome_reaction.tsv ## Convert output/tsv/reactome_pathway-reactome_reaction.tsv => output/ttl/reactome_pathway-reactome_reaction.ttl -< 2024-05-25T21:02:46 reactome_pathway-reactome_reaction +< 2024-06-04T05:55:26 reactome_pathway-reactome_reaction togoid-config config/reactome_pathway-reactome_reaction convert -> 2024-05-25T21:02:50 reactome_pathway-reactome_reaction +> 2024-06-04T05:55:30 reactome_pathway-reactome_reaction ### Update TTL for reactome_pathway-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_pathway-uniprot.ttl is older than output/tsv/reactome_pathway-uniprot.tsv ## Convert output/tsv/reactome_pathway-uniprot.tsv => output/ttl/reactome_pathway-uniprot.ttl -< 2024-05-25T21:02:50 reactome_pathway-uniprot +< 2024-06-04T05:55:30 reactome_pathway-uniprot togoid-config config/reactome_pathway-uniprot convert -> 2024-05-25T21:02:57 reactome_pathway-uniprot +> 2024-06-04T05:55:37 reactome_pathway-uniprot ### Update TTL for reactome_reaction-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-chebi.ttl is older than output/tsv/reactome_reaction-chebi.tsv ## Convert output/tsv/reactome_reaction-chebi.tsv => output/ttl/reactome_reaction-chebi.ttl -< 2024-05-25T21:02:57 reactome_reaction-chebi +< 2024-06-04T05:55:37 reactome_reaction-chebi togoid-config config/reactome_reaction-chebi convert -> 2024-05-25T21:02:59 reactome_reaction-chebi +> 2024-06-04T05:55:39 reactome_reaction-chebi ### Update TTL for reactome_reaction-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-go.ttl is older than output/tsv/reactome_reaction-go.tsv ## Convert output/tsv/reactome_reaction-go.tsv => output/ttl/reactome_reaction-go.ttl -< 2024-05-25T21:02:59 reactome_reaction-go +< 2024-06-04T05:55:39 reactome_reaction-go togoid-config config/reactome_reaction-go convert -> 2024-05-25T21:02:59 reactome_reaction-go +> 2024-06-04T05:55:39 reactome_reaction-go ### Update TTL for reactome_reaction-iuphar_ligand if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-iuphar_ligand.ttl is older than output/tsv/reactome_reaction-iuphar_ligand.tsv ## Convert output/tsv/reactome_reaction-iuphar_ligand.tsv => output/ttl/reactome_reaction-iuphar_ligand.ttl -< 2024-05-25T21:02:59 reactome_reaction-iuphar_ligand +< 2024-06-04T05:55:39 reactome_reaction-iuphar_ligand togoid-config config/reactome_reaction-iuphar_ligand convert -> 2024-05-25T21:02:59 reactome_reaction-iuphar_ligand +> 2024-06-04T05:55:40 reactome_reaction-iuphar_ligand ### Update TTL for reactome_reaction-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-mirbase.ttl is older than output/tsv/reactome_reaction-mirbase.tsv ## Convert output/tsv/reactome_reaction-mirbase.tsv => output/ttl/reactome_reaction-mirbase.ttl -< 2024-05-25T21:02:59 reactome_reaction-mirbase +< 2024-06-04T05:55:40 reactome_reaction-mirbase togoid-config config/reactome_reaction-mirbase convert -> 2024-05-25T21:02:59 reactome_reaction-mirbase +> 2024-06-04T05:55:40 reactome_reaction-mirbase ### Update TTL for reactome_reaction-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/reactome_reaction-uniprot.ttl is older than output/tsv/reactome_reaction-uniprot.tsv ## Convert output/tsv/reactome_reaction-uniprot.tsv => output/ttl/reactome_reaction-uniprot.ttl -< 2024-05-25T21:02:59 reactome_reaction-uniprot +< 2024-06-04T05:55:40 reactome_reaction-uniprot togoid-config config/reactome_reaction-uniprot convert -> 2024-05-25T21:03:05 reactome_reaction-uniprot +> 2024-06-04T05:55:46 reactome_reaction-uniprot ### Update TTL for refseq_protein-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/refseq_protein-uniprot.ttl is older than output/tsv/refseq_protein-uniprot.tsv ## Convert output/tsv/refseq_protein-uniprot.tsv => output/ttl/refseq_protein-uniprot.ttl -< 2024-05-25T21:03:05 refseq_protein-uniprot +< 2024-06-04T05:55:46 refseq_protein-uniprot togoid-config config/refseq_protein-uniprot convert -> 2024-05-25T21:53:56 refseq_protein-uniprot +> 2024-06-04T06:47:20 refseq_protein-uniprot ### Update TTL for refseq_rna-dbsnp if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/refseq_rna-dbsnp.ttl is newer than output/tsv/refseq_rna-dbsnp.tsv # => Preserving output/ttl/refseq_rna-dbsnp.ttl @@ -6683,312 +6829,387 @@ togoid-config config/refseq_protein-uniprot convert ### Update TTL for refseq_rna-taxonomy if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/refseq_rna-taxonomy.ttl is newer than output/tsv/refseq_rna-taxonomy.tsv # => Preserving output/ttl/refseq_rna-taxonomy.ttl -### Update TTL for rhea-chebi if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/rhea-chebi.ttl is newer than output/tsv/rhea-chebi.tsv -# => Preserving output/ttl/rhea-chebi.ttl -### Update TTL for rhea-ec if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/rhea-ec.ttl is newer than output/tsv/rhea-ec.tsv -# => Preserving output/ttl/rhea-ec.ttl -### Update TTL for rhea-go if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/rhea-go.ttl is newer than output/tsv/rhea-go.tsv -# => Preserving output/ttl/rhea-go.ttl -### Update TTL for rhea-pubmed if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/rhea-pubmed.ttl is newer than output/tsv/rhea-pubmed.tsv -# => Preserving output/ttl/rhea-pubmed.ttl -### Update TTL for rhea-reactome_reaction if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/rhea-reactome_reaction.ttl is newer than output/tsv/rhea-reactome_reaction.tsv -# => Preserving output/ttl/rhea-reactome_reaction.ttl -### Update TTL for rhea-uniprot if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/rhea-uniprot.ttl is newer than output/tsv/rhea-uniprot.tsv -# => Preserving output/ttl/rhea-uniprot.ttl +### Update TTL for rhea-chebi if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/rhea-chebi.ttl is older than output/tsv/rhea-chebi.tsv +## Convert output/tsv/rhea-chebi.tsv => output/ttl/rhea-chebi.ttl +< 2024-06-04T06:47:20 rhea-chebi +togoid-config config/rhea-chebi convert +> 2024-06-04T06:47:22 rhea-chebi +### Update TTL for rhea-ec if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/rhea-ec.ttl is older than output/tsv/rhea-ec.tsv +## Convert output/tsv/rhea-ec.tsv => output/ttl/rhea-ec.ttl +< 2024-06-04T06:47:22 rhea-ec +togoid-config config/rhea-ec convert +> 2024-06-04T06:47:22 rhea-ec +### Update TTL for rhea-go if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/rhea-go.ttl is older than output/tsv/rhea-go.tsv +## Convert output/tsv/rhea-go.tsv => output/ttl/rhea-go.ttl +< 2024-06-04T06:47:22 rhea-go +togoid-config config/rhea-go convert +> 2024-06-04T06:47:22 rhea-go +### Update TTL for rhea-pubmed if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/rhea-pubmed.ttl is older than output/tsv/rhea-pubmed.tsv +## Convert output/tsv/rhea-pubmed.tsv => output/ttl/rhea-pubmed.ttl +< 2024-06-04T06:47:22 rhea-pubmed +togoid-config config/rhea-pubmed convert +> 2024-06-04T06:47:23 rhea-pubmed +### Update TTL for rhea-reactome_reaction if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/rhea-reactome_reaction.ttl is older than output/tsv/rhea-reactome_reaction.tsv +## Convert output/tsv/rhea-reactome_reaction.tsv => output/ttl/rhea-reactome_reaction.ttl +< 2024-06-04T06:47:23 rhea-reactome_reaction +togoid-config config/rhea-reactome_reaction convert +> 2024-06-04T06:47:24 rhea-reactome_reaction +### Update TTL for rhea-uniprot if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/rhea-uniprot.ttl is older than output/tsv/rhea-uniprot.tsv +## Convert output/tsv/rhea-uniprot.tsv => output/ttl/rhea-uniprot.ttl +< 2024-06-04T06:47:24 rhea-uniprot +togoid-config config/rhea-uniprot convert +> 2024-06-04T06:53:02 rhea-uniprot ### Update TTL for sra_accession-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-bioproject.ttl is older than output/tsv/sra_accession-bioproject.tsv ## Convert output/tsv/sra_accession-bioproject.tsv => output/ttl/sra_accession-bioproject.ttl -< 2024-05-25T21:53:56 sra_accession-bioproject +< 2024-06-04T06:53:02 sra_accession-bioproject togoid-config config/sra_accession-bioproject convert -> 2024-05-25T21:54:01 sra_accession-bioproject +> 2024-06-04T06:53:06 sra_accession-bioproject ### Update TTL for sra_accession-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-biosample.ttl is older than output/tsv/sra_accession-biosample.tsv ## Convert output/tsv/sra_accession-biosample.tsv => output/ttl/sra_accession-biosample.ttl -< 2024-05-25T21:54:01 sra_accession-biosample +< 2024-06-04T06:53:06 sra_accession-biosample togoid-config config/sra_accession-biosample convert -> 2024-05-25T21:59:06 sra_accession-biosample +> 2024-06-04T06:58:14 sra_accession-biosample ### Update TTL for sra_accession-sra_analysis if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_analysis.ttl is older than output/tsv/sra_accession-sra_analysis.tsv ## Convert output/tsv/sra_accession-sra_analysis.tsv => output/ttl/sra_accession-sra_analysis.ttl -< 2024-05-25T21:59:06 sra_accession-sra_analysis +< 2024-06-04T06:58:14 sra_accession-sra_analysis togoid-config config/sra_accession-sra_analysis convert -> 2024-05-25T21:59:08 sra_accession-sra_analysis +> 2024-06-04T06:58:17 sra_accession-sra_analysis ### Update TTL for sra_accession-sra_experiment if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_experiment.ttl is older than output/tsv/sra_accession-sra_experiment.tsv ## Convert output/tsv/sra_accession-sra_experiment.tsv => output/ttl/sra_accession-sra_experiment.ttl -< 2024-05-25T21:59:08 sra_accession-sra_experiment +< 2024-06-04T06:58:17 sra_accession-sra_experiment togoid-config config/sra_accession-sra_experiment convert -> 2024-05-25T22:04:48 sra_accession-sra_experiment +> 2024-06-04T07:04:02 sra_accession-sra_experiment ### Update TTL for sra_accession-sra_project if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_project.ttl is older than output/tsv/sra_accession-sra_project.tsv ## Convert output/tsv/sra_accession-sra_project.tsv => output/ttl/sra_accession-sra_project.ttl -< 2024-05-25T22:04:48 sra_accession-sra_project +< 2024-06-04T07:04:02 sra_accession-sra_project togoid-config config/sra_accession-sra_project convert -> 2024-05-25T22:04:52 sra_accession-sra_project +> 2024-06-04T07:04:07 sra_accession-sra_project ### Update TTL for sra_accession-sra_run if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_run.ttl is older than output/tsv/sra_accession-sra_run.tsv ## Convert output/tsv/sra_accession-sra_run.tsv => output/ttl/sra_accession-sra_run.ttl -< 2024-05-25T22:04:52 sra_accession-sra_run +< 2024-06-04T07:04:07 sra_accession-sra_run togoid-config config/sra_accession-sra_run convert -> 2024-05-25T22:11:05 sra_accession-sra_run +> 2024-06-04T07:10:23 sra_accession-sra_run ### Update TTL for sra_accession-sra_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_accession-sra_sample.ttl is older than output/tsv/sra_accession-sra_sample.tsv ## Convert output/tsv/sra_accession-sra_sample.tsv => output/ttl/sra_accession-sra_sample.ttl -< 2024-05-25T22:11:05 sra_accession-sra_sample +< 2024-06-04T07:10:23 sra_accession-sra_sample togoid-config config/sra_accession-sra_sample convert -> 2024-05-25T22:16:12 sra_accession-sra_sample +> 2024-06-04T07:15:53 sra_accession-sra_sample ### Update TTL for sra_experiment-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-bioproject.ttl is older than output/tsv/sra_experiment-bioproject.tsv ## Convert output/tsv/sra_experiment-bioproject.tsv => output/ttl/sra_experiment-bioproject.ttl -< 2024-05-25T22:16:12 sra_experiment-bioproject +< 2024-06-04T07:15:53 sra_experiment-bioproject togoid-config config/sra_experiment-bioproject convert -> 2024-05-25T22:20:57 sra_experiment-bioproject +> 2024-06-04T07:20:52 sra_experiment-bioproject ### Update TTL for sra_experiment-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-biosample.ttl is older than output/tsv/sra_experiment-biosample.tsv ## Convert output/tsv/sra_experiment-biosample.tsv => output/ttl/sra_experiment-biosample.ttl -< 2024-05-25T22:20:57 sra_experiment-biosample +< 2024-06-04T07:20:52 sra_experiment-biosample togoid-config config/sra_experiment-biosample convert -> 2024-05-25T22:25:09 sra_experiment-biosample +> 2024-06-04T07:25:11 sra_experiment-biosample ### Update TTL for sra_experiment-sra_project if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-sra_project.ttl is older than output/tsv/sra_experiment-sra_project.tsv ## Convert output/tsv/sra_experiment-sra_project.tsv => output/ttl/sra_experiment-sra_project.ttl -< 2024-05-25T22:25:09 sra_experiment-sra_project +< 2024-06-04T07:25:11 sra_experiment-sra_project togoid-config config/sra_experiment-sra_project convert -> 2024-05-25T22:29:56 sra_experiment-sra_project +> 2024-06-04T07:30:19 sra_experiment-sra_project ### Update TTL for sra_experiment-sra_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_experiment-sra_sample.ttl is older than output/tsv/sra_experiment-sra_sample.tsv ## Convert output/tsv/sra_experiment-sra_sample.tsv => output/ttl/sra_experiment-sra_sample.ttl -< 2024-05-25T22:29:56 sra_experiment-sra_sample +< 2024-06-04T07:30:19 sra_experiment-sra_sample togoid-config config/sra_experiment-sra_sample convert -> 2024-05-25T22:34:50 sra_experiment-sra_sample +> 2024-06-04T07:35:27 sra_experiment-sra_sample ### Update TTL for sra_project-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_project-bioproject.ttl is older than output/tsv/sra_project-bioproject.tsv ## Convert output/tsv/sra_project-bioproject.tsv => output/ttl/sra_project-bioproject.ttl -< 2024-05-25T22:34:50 sra_project-bioproject +< 2024-06-04T07:35:27 sra_project-bioproject togoid-config config/sra_project-bioproject convert -> 2024-05-25T22:34:54 sra_project-bioproject +> 2024-06-04T07:35:32 sra_project-bioproject ### Update TTL for sra_run-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-bioproject.ttl is older than output/tsv/sra_run-bioproject.tsv ## Convert output/tsv/sra_run-bioproject.tsv => output/ttl/sra_run-bioproject.ttl -< 2024-05-25T22:34:54 sra_run-bioproject +< 2024-06-04T07:35:32 sra_run-bioproject togoid-config config/sra_run-bioproject convert -> 2024-05-25T22:39:40 sra_run-bioproject +> 2024-06-04T07:40:29 sra_run-bioproject ### Update TTL for sra_run-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-biosample.ttl is older than output/tsv/sra_run-biosample.tsv ## Convert output/tsv/sra_run-biosample.tsv => output/ttl/sra_run-biosample.ttl -< 2024-05-25T22:39:40 sra_run-biosample +< 2024-06-04T07:40:29 sra_run-biosample togoid-config config/sra_run-biosample convert -> 2024-05-25T22:44:18 sra_run-biosample +> 2024-06-04T07:45:19 sra_run-biosample ### Update TTL for sra_run-sra_experiment if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-sra_experiment.ttl is older than output/tsv/sra_run-sra_experiment.tsv ## Convert output/tsv/sra_run-sra_experiment.tsv => output/ttl/sra_run-sra_experiment.ttl -< 2024-05-25T22:44:18 sra_run-sra_experiment +< 2024-06-04T07:45:19 sra_run-sra_experiment togoid-config config/sra_run-sra_experiment convert -> 2024-05-25T22:49:30 sra_run-sra_experiment +> 2024-06-04T07:50:45 sra_run-sra_experiment ### Update TTL for sra_run-sra_project if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-sra_project.ttl is older than output/tsv/sra_run-sra_project.tsv ## Convert output/tsv/sra_run-sra_project.tsv => output/ttl/sra_run-sra_project.ttl -< 2024-05-25T22:49:30 sra_run-sra_project +< 2024-06-04T07:50:45 sra_run-sra_project togoid-config config/sra_run-sra_project convert -> 2024-05-25T22:54:07 sra_run-sra_project +> 2024-06-04T07:55:30 sra_run-sra_project ### Update TTL for sra_run-sra_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_run-sra_sample.ttl is older than output/tsv/sra_run-sra_sample.tsv ## Convert output/tsv/sra_run-sra_sample.tsv => output/ttl/sra_run-sra_sample.ttl -< 2024-05-25T22:54:07 sra_run-sra_sample +< 2024-06-04T07:55:30 sra_run-sra_sample togoid-config config/sra_run-sra_sample convert -> 2024-05-25T22:58:54 sra_run-sra_sample +> 2024-06-04T08:00:16 sra_run-sra_sample ### Update TTL for sra_sample-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/sra_sample-biosample.ttl is older than output/tsv/sra_sample-biosample.tsv ## Convert output/tsv/sra_sample-biosample.tsv => output/ttl/sra_sample-biosample.ttl -< 2024-05-25T22:58:54 sra_sample-biosample +< 2024-06-04T08:00:16 sra_sample-biosample togoid-config config/sra_sample-biosample convert -> 2024-05-25T23:03:07 sra_sample-biosample +> 2024-06-04T08:04:27 sra_sample-biosample ### Update TTL for swisslipids-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-chebi.ttl is older than output/tsv/swisslipids-chebi.tsv ## Convert output/tsv/swisslipids-chebi.tsv => output/ttl/swisslipids-chebi.ttl -< 2024-05-25T23:03:07 swisslipids-chebi +< 2024-06-04T08:04:27 swisslipids-chebi togoid-config config/swisslipids-chebi convert -> 2024-05-25T23:03:07 swisslipids-chebi +> 2024-06-04T08:04:28 swisslipids-chebi ### Update TTL for swisslipids-hmdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-hmdb.ttl is older than output/tsv/swisslipids-hmdb.tsv ## Convert output/tsv/swisslipids-hmdb.tsv => output/ttl/swisslipids-hmdb.ttl -< 2024-05-25T23:03:07 swisslipids-hmdb +< 2024-06-04T08:04:28 swisslipids-hmdb togoid-config config/swisslipids-hmdb convert -> 2024-05-25T23:03:07 swisslipids-hmdb +> 2024-06-04T08:04:28 swisslipids-hmdb ### Update TTL for swisslipids-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-inchi_key.ttl is older than output/tsv/swisslipids-inchi_key.tsv ## Convert output/tsv/swisslipids-inchi_key.tsv => output/ttl/swisslipids-inchi_key.ttl -< 2024-05-25T23:03:07 swisslipids-inchi_key +< 2024-06-04T08:04:28 swisslipids-inchi_key togoid-config config/swisslipids-inchi_key convert -> 2024-05-25T23:03:13 swisslipids-inchi_key +> 2024-06-04T08:04:34 swisslipids-inchi_key ### Update TTL for taxonomy-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/taxonomy-pubmed.ttl is older than output/tsv/taxonomy-pubmed.tsv ## Convert output/tsv/taxonomy-pubmed.tsv => output/ttl/taxonomy-pubmed.ttl -< 2024-05-25T23:03:13 taxonomy-pubmed +< 2024-06-04T08:04:34 taxonomy-pubmed togoid-config config/taxonomy-pubmed convert -> 2024-05-25T23:03:13 taxonomy-pubmed +> 2024-06-04T08:04:34 taxonomy-pubmed ### Update TTL for togovar-clinvar if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-clinvar.ttl is older than output/tsv/togovar-clinvar.tsv ## Convert output/tsv/togovar-clinvar.tsv => output/ttl/togovar-clinvar.ttl -< 2024-05-25T23:03:13 togovar-clinvar +< 2024-06-04T08:04:34 togovar-clinvar togoid-config config/togovar-clinvar convert -> 2024-05-25T23:03:17 togovar-clinvar +> 2024-06-04T08:04:38 togovar-clinvar ### Update TTL for togovar-dbsnp if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-dbsnp.ttl is older than output/tsv/togovar-dbsnp.tsv ## Convert output/tsv/togovar-dbsnp.tsv => output/ttl/togovar-dbsnp.ttl -< 2024-05-25T23:03:17 togovar-dbsnp +< 2024-06-04T08:04:38 togovar-dbsnp togoid-config config/togovar-dbsnp convert -> 2024-05-25T23:15:33 togovar-dbsnp +> 2024-06-04T08:17:21 togovar-dbsnp ### Update TTL for togovar-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-ensembl_gene.ttl is older than output/tsv/togovar-ensembl_gene.tsv ## Convert output/tsv/togovar-ensembl_gene.tsv => output/ttl/togovar-ensembl_gene.ttl -< 2024-05-25T23:15:33 togovar-ensembl_gene +< 2024-06-04T08:17:21 togovar-ensembl_gene togoid-config config/togovar-ensembl_gene convert -> 2024-05-25T23:32:54 togovar-ensembl_gene +> 2024-06-04T08:35:11 togovar-ensembl_gene ### Update TTL for togovar-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-ensembl_transcript.ttl is older than output/tsv/togovar-ensembl_transcript.tsv ## Convert output/tsv/togovar-ensembl_transcript.tsv => output/ttl/togovar-ensembl_transcript.ttl -< 2024-05-25T23:32:54 togovar-ensembl_transcript +< 2024-06-04T08:35:11 togovar-ensembl_transcript togoid-config config/togovar-ensembl_transcript convert -> 2024-05-26T02:15:28 togovar-ensembl_transcript +> 2024-06-04T11:29:21 togovar-ensembl_transcript ### Update TTL for togovar-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-hgnc.ttl is older than output/tsv/togovar-hgnc.tsv ## Convert output/tsv/togovar-hgnc.tsv => output/ttl/togovar-hgnc.ttl -< 2024-05-26T02:15:28 togovar-hgnc +< 2024-06-04T11:29:21 togovar-hgnc togoid-config config/togovar-hgnc convert -> 2024-05-26T02:25:15 togovar-hgnc +> 2024-06-04T11:38:30 togovar-hgnc ### Update TTL for togovar-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-ncbigene.ttl is older than output/tsv/togovar-ncbigene.tsv ## Convert output/tsv/togovar-ncbigene.tsv => output/ttl/togovar-ncbigene.ttl -< 2024-05-26T02:25:15 togovar-ncbigene +< 2024-06-04T11:38:30 togovar-ncbigene togoid-config config/togovar-ncbigene convert -> 2024-05-26T02:35:29 togovar-ncbigene +> 2024-06-04T11:47:49 togovar-ncbigene ### Update TTL for togovar-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-pubmed.ttl is older than output/tsv/togovar-pubmed.tsv ## Convert output/tsv/togovar-pubmed.tsv => output/ttl/togovar-pubmed.ttl -< 2024-05-26T02:35:29 togovar-pubmed +< 2024-06-04T11:47:49 togovar-pubmed togoid-config config/togovar-pubmed convert -> 2024-05-26T02:35:34 togovar-pubmed +> 2024-06-04T11:47:55 togovar-pubmed ### Update TTL for togovar-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/togovar-refseq_rna.ttl is older than output/tsv/togovar-refseq_rna.tsv ## Convert output/tsv/togovar-refseq_rna.tsv => output/ttl/togovar-refseq_rna.ttl -< 2024-05-26T02:35:34 togovar-refseq_rna +< 2024-06-04T11:47:55 togovar-refseq_rna togoid-config config/togovar-refseq_rna convert -> 2024-05-26T03:23:14 togovar-refseq_rna +> 2024-06-04T12:35:19 togovar-refseq_rna ### Update TTL for uberon-ncit_tissue if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uberon-ncit_tissue.ttl is older than output/tsv/uberon-ncit_tissue.tsv ## Convert output/tsv/uberon-ncit_tissue.tsv => output/ttl/uberon-ncit_tissue.ttl -< 2024-05-26T03:23:14 uberon-ncit_tissue +< 2024-06-04T12:35:19 uberon-ncit_tissue togoid-config config/uberon-ncit_tissue convert -> 2024-05-26T03:23:15 uberon-ncit_tissue -### Update TTL for uniprot-chembl_target if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-chembl_target.ttl is newer than output/tsv/uniprot-chembl_target.tsv -# => Preserving output/ttl/uniprot-chembl_target.ttl -### Update TTL for uniprot-dbsnp if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-dbsnp.ttl is newer than output/tsv/uniprot-dbsnp.tsv -# => Preserving output/ttl/uniprot-dbsnp.ttl -### Update TTL for uniprot-ec if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-ec.ttl is newer than output/tsv/uniprot-ec.tsv -# => Preserving output/ttl/uniprot-ec.ttl -### Update TTL for uniprot-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-ensembl_gene.ttl is newer than output/tsv/uniprot-ensembl_gene.tsv -# => Preserving output/ttl/uniprot-ensembl_gene.ttl -### Update TTL for uniprot-ensembl_protein if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-ensembl_protein.ttl is newer than output/tsv/uniprot-ensembl_protein.tsv -# => Preserving output/ttl/uniprot-ensembl_protein.ttl -### Update TTL for uniprot-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-ensembl_transcript.ttl is newer than output/tsv/uniprot-ensembl_transcript.tsv -# => Preserving output/ttl/uniprot-ensembl_transcript.ttl -### Update TTL for uniprot-go if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-go.ttl is newer than output/tsv/uniprot-go.tsv -# => Preserving output/ttl/uniprot-go.ttl -### Update TTL for uniprot-hgnc if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-hgnc.ttl is newer than output/tsv/uniprot-hgnc.tsv -# => Preserving output/ttl/uniprot-hgnc.ttl -### Update TTL for uniprot-insdc if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-insdc.ttl is newer than output/tsv/uniprot-insdc.tsv -# => Preserving output/ttl/uniprot-insdc.ttl -### Update TTL for uniprot-intact if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-intact.ttl is newer than output/tsv/uniprot-intact.tsv -# => Preserving output/ttl/uniprot-intact.ttl -### Update TTL for uniprot-ncbigene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-ncbigene.ttl is newer than output/tsv/uniprot-ncbigene.tsv -# => Preserving output/ttl/uniprot-ncbigene.ttl -### Update TTL for uniprot-oma_group if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-oma_group.ttl is newer than output/tsv/uniprot-oma_group.tsv -# => Preserving output/ttl/uniprot-oma_group.ttl -### Update TTL for uniprot-omim_gene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-omim_gene.ttl is newer than output/tsv/uniprot-omim_gene.tsv -# => Preserving output/ttl/uniprot-omim_gene.ttl -### Update TTL for uniprot-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-omim_phenotype.ttl is newer than output/tsv/uniprot-omim_phenotype.tsv -# => Preserving output/ttl/uniprot-omim_phenotype.ttl -### Update TTL for uniprot-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-orphanet_phenotype.ttl is newer than output/tsv/uniprot-orphanet_phenotype.tsv -# => Preserving output/ttl/uniprot-orphanet_phenotype.ttl -### Update TTL for uniprot-pdb if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-pdb.ttl is newer than output/tsv/uniprot-pdb.tsv -# => Preserving output/ttl/uniprot-pdb.ttl -### Update TTL for uniprot-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-reactome_pathway.ttl is newer than output/tsv/uniprot-reactome_pathway.tsv -# => Preserving output/ttl/uniprot-reactome_pathway.ttl -### Update TTL for uniprot-refseq_protein if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-refseq_protein.ttl is newer than output/tsv/uniprot-refseq_protein.tsv -# => Preserving output/ttl/uniprot-refseq_protein.ttl -### Update TTL for uniprot-uniprot_mnemonic if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot-uniprot_mnemonic.ttl is newer than output/tsv/uniprot-uniprot_mnemonic.tsv -# => Preserving output/ttl/uniprot-uniprot_mnemonic.ttl +> 2024-06-04T12:35:19 uberon-ncit_tissue +### Update TTL for uniprot-chembl_target if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-chembl_target.ttl is older than output/tsv/uniprot-chembl_target.tsv +## Convert output/tsv/uniprot-chembl_target.tsv => output/ttl/uniprot-chembl_target.ttl +< 2024-06-04T12:35:19 uniprot-chembl_target +togoid-config config/uniprot-chembl_target convert +> 2024-06-04T12:35:20 uniprot-chembl_target +### Update TTL for uniprot-dbsnp if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-dbsnp.ttl is older than output/tsv/uniprot-dbsnp.tsv +## Convert output/tsv/uniprot-dbsnp.tsv => output/ttl/uniprot-dbsnp.ttl +< 2024-06-04T12:35:20 uniprot-dbsnp +togoid-config config/uniprot-dbsnp convert +> 2024-06-04T12:35:21 uniprot-dbsnp +### Update TTL for uniprot-ec if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-ec.ttl is older than output/tsv/uniprot-ec.tsv +## Convert output/tsv/uniprot-ec.tsv => output/ttl/uniprot-ec.ttl +< 2024-06-04T12:35:21 uniprot-ec +togoid-config config/uniprot-ec convert +> 2024-06-04T12:40:38 uniprot-ec +### Update TTL for uniprot-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-ensembl_gene.ttl is older than output/tsv/uniprot-ensembl_gene.tsv +## Convert output/tsv/uniprot-ensembl_gene.tsv => output/ttl/uniprot-ensembl_gene.ttl +< 2024-06-04T12:40:38 uniprot-ensembl_gene +togoid-config config/uniprot-ensembl_gene convert +> 2024-06-04T12:41:57 uniprot-ensembl_gene +### Update TTL for uniprot-ensembl_protein if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-ensembl_protein.ttl is older than output/tsv/uniprot-ensembl_protein.tsv +## Convert output/tsv/uniprot-ensembl_protein.tsv => output/ttl/uniprot-ensembl_protein.ttl +< 2024-06-04T12:41:57 uniprot-ensembl_protein +togoid-config config/uniprot-ensembl_protein convert +> 2024-06-04T12:43:19 uniprot-ensembl_protein +### Update TTL for uniprot-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-ensembl_transcript.ttl is older than output/tsv/uniprot-ensembl_transcript.tsv +## Convert output/tsv/uniprot-ensembl_transcript.tsv => output/ttl/uniprot-ensembl_transcript.ttl +< 2024-06-04T12:43:19 uniprot-ensembl_transcript +togoid-config config/uniprot-ensembl_transcript convert +> 2024-06-04T12:44:46 uniprot-ensembl_transcript +### Update TTL for uniprot-go if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-go.ttl is older than output/tsv/uniprot-go.tsv +## Convert output/tsv/uniprot-go.tsv => output/ttl/uniprot-go.ttl +< 2024-06-04T12:44:46 uniprot-go +togoid-config config/uniprot-go convert +> 2024-06-04T16:05:10 uniprot-go +### Update TTL for uniprot-hgnc if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-hgnc.ttl is older than output/tsv/uniprot-hgnc.tsv +## Convert output/tsv/uniprot-hgnc.tsv => output/ttl/uniprot-hgnc.ttl +< 2024-06-04T16:05:10 uniprot-hgnc +togoid-config config/uniprot-hgnc convert +> 2024-06-04T16:05:11 uniprot-hgnc +### Update TTL for uniprot-insdc if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-insdc.ttl is older than output/tsv/uniprot-insdc.tsv +## Convert output/tsv/uniprot-insdc.tsv => output/ttl/uniprot-insdc.ttl +< 2024-06-04T16:05:11 uniprot-insdc +togoid-config config/uniprot-insdc convert +> 2024-06-04T17:26:09 uniprot-insdc +### Update TTL for uniprot-intact if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-intact.ttl is older than output/tsv/uniprot-intact.tsv +## Convert output/tsv/uniprot-intact.tsv => output/ttl/uniprot-intact.ttl +< 2024-06-04T17:26:09 uniprot-intact +togoid-config config/uniprot-intact convert +> 2024-06-04T17:26:11 uniprot-intact +### Update TTL for uniprot-ncbigene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-ncbigene.ttl is older than output/tsv/uniprot-ncbigene.tsv +## Convert output/tsv/uniprot-ncbigene.tsv => output/ttl/uniprot-ncbigene.ttl +< 2024-06-04T17:26:11 uniprot-ncbigene +togoid-config config/uniprot-ncbigene convert +> 2024-06-04T17:27:50 uniprot-ncbigene +### Update TTL for uniprot-oma_group if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-oma_group.ttl is older than output/tsv/uniprot-oma_group.tsv +## Convert output/tsv/uniprot-oma_group.tsv => output/ttl/uniprot-oma_group.ttl +< 2024-06-04T17:27:50 uniprot-oma_group +togoid-config config/uniprot-oma_group convert +> 2024-06-04T17:28:45 uniprot-oma_group +### Update TTL for uniprot-omim_gene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-omim_gene.ttl is older than output/tsv/uniprot-omim_gene.tsv +## Convert output/tsv/uniprot-omim_gene.tsv => output/ttl/uniprot-omim_gene.ttl +< 2024-06-04T17:28:45 uniprot-omim_gene +togoid-config config/uniprot-omim_gene convert +> 2024-06-04T17:28:46 uniprot-omim_gene +### Update TTL for uniprot-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-omim_phenotype.ttl is older than output/tsv/uniprot-omim_phenotype.tsv +## Convert output/tsv/uniprot-omim_phenotype.tsv => output/ttl/uniprot-omim_phenotype.ttl +< 2024-06-04T17:28:46 uniprot-omim_phenotype +togoid-config config/uniprot-omim_phenotype convert +> 2024-06-04T17:28:46 uniprot-omim_phenotype +### Update TTL for uniprot-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-orphanet_phenotype.ttl is older than output/tsv/uniprot-orphanet_phenotype.tsv +## Convert output/tsv/uniprot-orphanet_phenotype.tsv => output/ttl/uniprot-orphanet_phenotype.ttl +< 2024-06-04T17:28:46 uniprot-orphanet_phenotype +togoid-config config/uniprot-orphanet_phenotype convert +> 2024-06-04T17:28:46 uniprot-orphanet_phenotype +### Update TTL for uniprot-pdb if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-pdb.ttl is older than output/tsv/uniprot-pdb.tsv +## Convert output/tsv/uniprot-pdb.tsv => output/ttl/uniprot-pdb.ttl +< 2024-06-04T17:28:46 uniprot-pdb +togoid-config config/uniprot-pdb convert +> 2024-06-04T17:28:49 uniprot-pdb +### Update TTL for uniprot-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-reactome_pathway.ttl is older than output/tsv/uniprot-reactome_pathway.tsv +## Convert output/tsv/uniprot-reactome_pathway.tsv => output/ttl/uniprot-reactome_pathway.ttl +< 2024-06-04T17:28:49 uniprot-reactome_pathway +togoid-config config/uniprot-reactome_pathway convert +> 2024-06-04T17:28:52 uniprot-reactome_pathway +### Update TTL for uniprot-refseq_protein if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-refseq_protein.ttl is older than output/tsv/uniprot-refseq_protein.tsv +## Convert output/tsv/uniprot-refseq_protein.tsv => output/ttl/uniprot-refseq_protein.ttl +< 2024-06-04T17:28:52 uniprot-refseq_protein +togoid-config config/uniprot-refseq_protein convert +> 2024-06-04T17:36:09 uniprot-refseq_protein +### Update TTL for uniprot-uniprot_mnemonic if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot-uniprot_mnemonic.ttl is older than output/tsv/uniprot-uniprot_mnemonic.tsv +## Convert output/tsv/uniprot-uniprot_mnemonic.tsv => output/ttl/uniprot-uniprot_mnemonic.ttl +< 2024-06-04T17:36:09 uniprot-uniprot_mnemonic +togoid-config config/uniprot-uniprot_mnemonic convert +> 2024-06-04T19:34:05 uniprot-uniprot_mnemonic ### Update TTL for uniprot_reference_proteome-assembly_insdc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uniprot_reference_proteome-assembly_insdc.ttl is older than output/tsv/uniprot_reference_proteome-assembly_insdc.tsv ## Convert output/tsv/uniprot_reference_proteome-assembly_insdc.tsv => output/ttl/uniprot_reference_proteome-assembly_insdc.ttl -< 2024-05-26T03:23:15 uniprot_reference_proteome-assembly_insdc +< 2024-06-04T19:34:05 uniprot_reference_proteome-assembly_insdc togoid-config config/uniprot_reference_proteome-assembly_insdc convert -> 2024-05-26T03:23:20 uniprot_reference_proteome-assembly_insdc +> 2024-06-04T19:34:10 uniprot_reference_proteome-assembly_insdc ### Update TTL for uniprot_reference_proteome-assembly_refseq if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uniprot_reference_proteome-assembly_refseq.ttl is older than output/tsv/uniprot_reference_proteome-assembly_refseq.tsv ## Convert output/tsv/uniprot_reference_proteome-assembly_refseq.tsv => output/ttl/uniprot_reference_proteome-assembly_refseq.ttl -< 2024-05-26T03:23:20 uniprot_reference_proteome-assembly_refseq +< 2024-06-04T19:34:10 uniprot_reference_proteome-assembly_refseq togoid-config config/uniprot_reference_proteome-assembly_refseq convert -> 2024-05-26T03:23:20 uniprot_reference_proteome-assembly_refseq +> 2024-06-04T19:34:11 uniprot_reference_proteome-assembly_refseq ### Update TTL for uniprot_reference_proteome-taxonomy if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/uniprot_reference_proteome-taxonomy.ttl is older than output/tsv/uniprot_reference_proteome-taxonomy.tsv ## Convert output/tsv/uniprot_reference_proteome-taxonomy.tsv => output/ttl/uniprot_reference_proteome-taxonomy.ttl -< 2024-05-26T03:23:20 uniprot_reference_proteome-taxonomy +< 2024-06-04T19:34:11 uniprot_reference_proteome-taxonomy togoid-config config/uniprot_reference_proteome-taxonomy convert -> 2024-05-26T03:23:25 uniprot_reference_proteome-taxonomy +> 2024-06-04T19:34:16 uniprot_reference_proteome-taxonomy ### Update TTL for wikipathways-chebi if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/wikipathways-chebi.ttl is newer than output/tsv/wikipathways-chebi.tsv # => Preserving output/ttl/wikipathways-chebi.ttl ### Update TTL for wikipathways-doid if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-doid.ttl is older than output/tsv/wikipathways-doid.tsv ## Convert output/tsv/wikipathways-doid.tsv => output/ttl/wikipathways-doid.ttl -< 2024-05-26T03:23:25 wikipathways-doid +< 2024-06-04T19:34:16 wikipathways-doid togoid-config config/wikipathways-doid convert -> 2024-05-26T03:23:25 wikipathways-doid +> 2024-06-04T19:34:16 wikipathways-doid ### Update TTL for wikipathways-hmdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-hmdb.ttl is older than output/tsv/wikipathways-hmdb.tsv ## Convert output/tsv/wikipathways-hmdb.tsv => output/ttl/wikipathways-hmdb.ttl -< 2024-05-26T03:23:25 wikipathways-hmdb +< 2024-06-04T19:34:16 wikipathways-hmdb togoid-config config/wikipathways-hmdb convert -> 2024-05-26T03:23:26 wikipathways-hmdb +> 2024-06-04T19:34:16 wikipathways-hmdb ### Update TTL for wikipathways-lipidmaps if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-lipidmaps.ttl is older than output/tsv/wikipathways-lipidmaps.tsv ## Convert output/tsv/wikipathways-lipidmaps.tsv => output/ttl/wikipathways-lipidmaps.ttl -< 2024-05-26T03:23:26 wikipathways-lipidmaps +< 2024-06-04T19:34:16 wikipathways-lipidmaps togoid-config config/wikipathways-lipidmaps convert -> 2024-05-26T03:23:26 wikipathways-lipidmaps +> 2024-06-04T19:34:17 wikipathways-lipidmaps ### Update TTL for wikipathways-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/wikipathways-ncbigene.ttl is older than output/tsv/wikipathways-ncbigene.tsv ## Convert output/tsv/wikipathways-ncbigene.tsv => output/ttl/wikipathways-ncbigene.ttl -< 2024-05-26T03:23:26 wikipathways-ncbigene +< 2024-06-04T19:34:17 wikipathways-ncbigene togoid-config config/wikipathways-ncbigene convert -> 2024-05-26T03:23:26 wikipathways-ncbigene +> 2024-06-04T19:34:17 wikipathways-ncbigene ### Update TTL for wikipathways-uniprot if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/wikipathways-uniprot.ttl is newer than output/tsv/wikipathways-uniprot.tsv # => Preserving output/ttl/wikipathways-uniprot.ttl @@ -6997,12 +7218,12 @@ Rule for TTL (output/ttl/bioproject-biosample.ttl) Investigating output/ttl/bioproject-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:11:36 +0900 +timestamp: 2024-06-03 21:14:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/bioproject-biosample.tsv (2024-05-25 13:48:48 +0900) -latest-prerequisite time: 2024-05-25 13:48:48 +0900 +--output/tsv/bioproject-biosample.tsv (2024-06-03 03:50:07 +0900) +latest-prerequisite time: 2024-06-03 03:50:07 +0900 ................................ Rule for TTL (output/ttl/bioproject-geo_series.ttl) @@ -7010,12 +7231,12 @@ Rule for TTL (output/ttl/bioproject-geo_series.ttl) Investigating output/ttl/bioproject-geo_series.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:11:38 +0900 +timestamp: 2024-06-03 21:14:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/bioproject-geo_series.tsv (2024-05-25 13:48:50 +0900) -latest-prerequisite time: 2024-05-25 13:48:50 +0900 +--output/tsv/bioproject-geo_series.tsv (2024-06-03 03:50:11 +0900) +latest-prerequisite time: 2024-06-03 03:50:11 +0900 ................................ Rule for TTL (output/ttl/bioproject-pubmed.ttl) @@ -7023,12 +7244,12 @@ Rule for TTL (output/ttl/bioproject-pubmed.ttl) Investigating output/ttl/bioproject-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:11:40 +0900 +timestamp: 2024-06-03 21:14:39 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/bioproject-pubmed.tsv (2024-05-25 13:48:52 +0900) -latest-prerequisite time: 2024-05-25 13:48:52 +0900 +--output/tsv/bioproject-pubmed.tsv (2024-06-03 03:50:13 +0900) +latest-prerequisite time: 2024-06-03 03:50:13 +0900 ................................ Rule for TTL (output/ttl/bioproject_umbrella-bioproject.ttl) @@ -7036,12 +7257,12 @@ Rule for TTL (output/ttl/bioproject_umbrella-bioproject.ttl) Investigating output/ttl/bioproject_umbrella-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:11:41 +0900 +timestamp: 2024-06-03 21:14:40 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/bioproject_umbrella-bioproject.tsv (2024-05-25 13:48:52 +0900) -latest-prerequisite time: 2024-05-25 13:48:52 +0900 +--output/tsv/bioproject_umbrella-bioproject.tsv (2024-06-03 03:50:13 +0900) +latest-prerequisite time: 2024-06-03 03:50:13 +0900 ................................ Rule for TTL (output/ttl/biosample-bioproject.ttl) @@ -7049,12 +7270,12 @@ Rule for TTL (output/ttl/biosample-bioproject.ttl) Investigating output/ttl/biosample-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:14:19 +0900 +timestamp: 2024-06-03 21:17:23 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/biosample-bioproject.tsv (2024-05-25 13:49:48 +0900) -latest-prerequisite time: 2024-05-25 13:49:48 +0900 +--output/tsv/biosample-bioproject.tsv (2024-06-03 03:50:56 +0900) +latest-prerequisite time: 2024-06-03 03:50:56 +0900 ................................ Rule for TTL (output/ttl/biosample-geo_sample.ttl) @@ -7062,12 +7283,12 @@ Rule for TTL (output/ttl/biosample-geo_sample.ttl) Investigating output/ttl/biosample-geo_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:15:31 +0900 +timestamp: 2024-06-03 21:18:38 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/biosample-geo_sample.tsv (2024-05-25 13:50:47 +0900) -latest-prerequisite time: 2024-05-25 13:50:47 +0900 +--output/tsv/biosample-geo_sample.tsv (2024-06-03 03:51:54 +0900) +latest-prerequisite time: 2024-06-03 03:51:54 +0900 ................................ Rule for TTL (output/ttl/cellosaurus-ncit_disease.ttl) @@ -7140,12 +7361,12 @@ Rule for TTL (output/ttl/ensembl_gene-affy_probeset.ttl) Investigating output/ttl/ensembl_gene-affy_probeset.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:17:13 +0900 +timestamp: 2024-06-03 21:20:13 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ensembl_gene-affy_probeset.tsv (2024-05-25 14:07:57 +0900) -latest-prerequisite time: 2024-05-25 14:07:57 +0900 +--output/tsv/ensembl_gene-affy_probeset.tsv (2024-06-03 04:09:03 +0900) +latest-prerequisite time: 2024-06-03 04:09:03 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ensembl_protein.ttl) @@ -7153,12 +7374,12 @@ Rule for TTL (output/ttl/ensembl_gene-ensembl_protein.ttl) Investigating output/ttl/ensembl_gene-ensembl_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:19:26 +0900 +timestamp: 2024-06-03 21:22:16 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ensembl_gene-ensembl_protein.tsv (2024-05-25 14:09:50 +0900) -latest-prerequisite time: 2024-05-25 14:09:50 +0900 +--output/tsv/ensembl_gene-ensembl_protein.tsv (2024-06-03 04:11:03 +0900) +latest-prerequisite time: 2024-06-03 04:11:03 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ensembl_transcript.ttl) @@ -7166,12 +7387,12 @@ Rule for TTL (output/ttl/ensembl_gene-ensembl_transcript.ttl) Investigating output/ttl/ensembl_gene-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:22:06 +0900 +timestamp: 2024-06-03 21:24:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ensembl_gene-ensembl_transcript.tsv (2024-05-25 14:11:57 +0900) -latest-prerequisite time: 2024-05-25 14:11:57 +0900 +--output/tsv/ensembl_gene-ensembl_transcript.tsv (2024-06-03 04:13:10 +0900) +latest-prerequisite time: 2024-06-03 04:13:10 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-hgnc.ttl) @@ -7179,12 +7400,12 @@ Rule for TTL (output/ttl/ensembl_gene-hgnc.ttl) Investigating output/ttl/ensembl_gene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:22:07 +0900 +timestamp: 2024-06-03 21:25:00 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ensembl_gene-hgnc.tsv (2024-05-25 14:11:58 +0900) -latest-prerequisite time: 2024-05-25 14:11:58 +0900 +--output/tsv/ensembl_gene-hgnc.tsv (2024-06-03 04:13:11 +0900) +latest-prerequisite time: 2024-06-03 04:13:11 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ncbigene.ttl) @@ -7192,12 +7413,12 @@ Rule for TTL (output/ttl/ensembl_gene-ncbigene.ttl) Investigating output/ttl/ensembl_gene-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:24:33 +0900 +timestamp: 2024-06-03 21:27:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ensembl_gene-ncbigene.tsv (2024-05-25 14:13:53 +0900) -latest-prerequisite time: 2024-05-25 14:13:53 +0900 +--output/tsv/ensembl_gene-ncbigene.tsv (2024-06-03 04:15:03 +0900) +latest-prerequisite time: 2024-06-03 04:15:03 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-uniprot.ttl) @@ -7205,12 +7426,12 @@ Rule for TTL (output/ttl/ensembl_gene-uniprot.ttl) Investigating output/ttl/ensembl_gene-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:25:23 +0900 +timestamp: 2024-06-03 21:28:06 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ensembl_gene-uniprot.tsv (2024-05-25 14:15:27 +0900) -latest-prerequisite time: 2024-05-25 14:15:27 +0900 +--output/tsv/ensembl_gene-uniprot.tsv (2024-06-03 04:16:24 +0900) +latest-prerequisite time: 2024-06-03 04:16:24 +0900 ................................ Rule for TTL (output/ttl/ensembl_protein-ensembl_transcript.ttl) @@ -7218,12 +7439,12 @@ Rule for TTL (output/ttl/ensembl_protein-ensembl_transcript.ttl) Investigating output/ttl/ensembl_protein-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:27:29 +0900 +timestamp: 2024-06-03 21:30:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ensembl_protein-ensembl_transcript.tsv (2024-05-25 14:17:22 +0900) -latest-prerequisite time: 2024-05-25 14:17:22 +0900 +--output/tsv/ensembl_protein-ensembl_transcript.tsv (2024-06-03 04:18:17 +0900) +latest-prerequisite time: 2024-06-03 04:18:17 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-affy_probeset.ttl) @@ -7231,12 +7452,12 @@ Rule for TTL (output/ttl/ensembl_transcript-affy_probeset.ttl) Investigating output/ttl/ensembl_transcript-affy_probeset.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:27:32 +0900 +timestamp: 2024-06-03 21:30:15 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ensembl_transcript-affy_probeset.tsv (2024-05-25 14:18:09 +0900) -latest-prerequisite time: 2024-05-25 14:18:09 +0900 +--output/tsv/ensembl_transcript-affy_probeset.tsv (2024-06-03 04:19:13 +0900) +latest-prerequisite time: 2024-06-03 04:19:13 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-go.ttl) @@ -7244,12 +7465,12 @@ Rule for TTL (output/ttl/ensembl_transcript-go.ttl) Investigating output/ttl/ensembl_transcript-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:39:47 +0900 +timestamp: 2024-06-03 21:42:14 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ensembl_transcript-go.tsv (2024-05-25 14:22:05 +0900) -latest-prerequisite time: 2024-05-25 14:22:05 +0900 +--output/tsv/ensembl_transcript-go.tsv (2024-06-03 04:23:23 +0900) +latest-prerequisite time: 2024-06-03 04:23:23 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-hgnc.ttl) @@ -7257,12 +7478,12 @@ Rule for TTL (output/ttl/ensembl_transcript-hgnc.ttl) Investigating output/ttl/ensembl_transcript-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:39:51 +0900 +timestamp: 2024-06-03 21:42:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ensembl_transcript-hgnc.tsv (2024-05-25 14:22:06 +0900) -latest-prerequisite time: 2024-05-25 14:22:06 +0900 +--output/tsv/ensembl_transcript-hgnc.tsv (2024-06-03 04:23:23 +0900) +latest-prerequisite time: 2024-06-03 04:23:23 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-refseq_rna.ttl) @@ -7270,12 +7491,12 @@ Rule for TTL (output/ttl/ensembl_transcript-refseq_rna.ttl) Investigating output/ttl/ensembl_transcript-refseq_rna.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 17:47:57 +0900 +timestamp: 2024-06-03 21:50:24 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ensembl_transcript-refseq_rna.tsv (2024-05-25 14:25:30 +0900) -latest-prerequisite time: 2024-05-25 14:25:30 +0900 +--output/tsv/ensembl_transcript-refseq_rna.tsv (2024-06-03 04:26:52 +0900) +latest-prerequisite time: 2024-06-03 04:26:52 +0900 ................................ Rule for TTL (output/ttl/glytoucan-doid.ttl) @@ -7387,12 +7608,12 @@ Rule for TTL (output/ttl/interpro-go.ttl) Investigating output/ttl/interpro-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-07 02:54:20 +0900 +timestamp: 2024-06-03 22:40:59 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/interpro-go.tsv (2024-04-06 19:00:21 +0900) -latest-prerequisite time: 2024-04-06 19:00:21 +0900 +--output/tsv/interpro-go.tsv (2024-06-03 04:28:57 +0900) +latest-prerequisite time: 2024-06-03 04:28:57 +0900 ................................ Rule for TTL (output/ttl/interpro-pdb.ttl) @@ -7400,12 +7621,12 @@ Rule for TTL (output/ttl/interpro-pdb.ttl) Investigating output/ttl/interpro-pdb.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-07 02:54:32 +0900 +timestamp: 2024-06-03 22:41:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/interpro-pdb.tsv (2024-04-06 19:00:24 +0900) -latest-prerequisite time: 2024-04-06 19:00:24 +0900 +--output/tsv/interpro-pdb.tsv (2024-06-03 04:29:01 +0900) +latest-prerequisite time: 2024-06-03 04:29:01 +0900 ................................ Rule for TTL (output/ttl/interpro-pfam.ttl) @@ -7413,12 +7634,12 @@ Rule for TTL (output/ttl/interpro-pfam.ttl) Investigating output/ttl/interpro-pfam.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-07 02:54:32 +0900 +timestamp: 2024-06-03 22:41:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/interpro-pfam.tsv (2024-04-06 19:00:26 +0900) -latest-prerequisite time: 2024-04-06 19:00:26 +0900 +--output/tsv/interpro-pfam.tsv (2024-06-03 04:29:02 +0900) +latest-prerequisite time: 2024-06-03 04:29:02 +0900 ................................ Rule for TTL (output/ttl/interpro-prosite.ttl) @@ -7426,12 +7647,12 @@ Rule for TTL (output/ttl/interpro-prosite.ttl) Investigating output/ttl/interpro-prosite.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-07 02:54:33 +0900 +timestamp: 2024-06-03 22:41:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/interpro-prosite.tsv (2024-04-06 19:00:27 +0900) -latest-prerequisite time: 2024-04-06 19:00:27 +0900 +--output/tsv/interpro-prosite.tsv (2024-06-03 04:29:04 +0900) +latest-prerequisite time: 2024-06-03 04:29:04 +0900 ................................ Rule for TTL (output/ttl/interpro-pubmed.ttl) @@ -7439,12 +7660,12 @@ Rule for TTL (output/ttl/interpro-pubmed.ttl) Investigating output/ttl/interpro-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-07 02:54:34 +0900 +timestamp: 2024-06-03 22:41:13 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/interpro-pubmed.tsv (2024-04-06 19:00:29 +0900) -latest-prerequisite time: 2024-04-06 19:00:29 +0900 +--output/tsv/interpro-pubmed.tsv (2024-06-03 04:29:05 +0900) +latest-prerequisite time: 2024-06-03 04:29:05 +0900 ................................ Rule for TTL (output/ttl/interpro-reactome_pathway.ttl) @@ -7452,12 +7673,12 @@ Rule for TTL (output/ttl/interpro-reactome_pathway.ttl) Investigating output/ttl/interpro-reactome_pathway.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-07 02:54:38 +0900 +timestamp: 2024-06-03 22:41:16 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/interpro-reactome_pathway.tsv (2024-04-06 19:00:30 +0900) -latest-prerequisite time: 2024-04-06 19:00:30 +0900 +--output/tsv/interpro-reactome_pathway.tsv (2024-06-03 04:29:07 +0900) +latest-prerequisite time: 2024-06-03 04:29:07 +0900 ................................ Rule for TTL (output/ttl/interpro-smart.ttl) @@ -7465,12 +7686,12 @@ Rule for TTL (output/ttl/interpro-smart.ttl) Investigating output/ttl/interpro-smart.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-07 02:54:38 +0900 +timestamp: 2024-06-03 22:41:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/interpro-smart.tsv (2024-04-06 19:00:32 +0900) -latest-prerequisite time: 2024-04-06 19:00:32 +0900 +--output/tsv/interpro-smart.tsv (2024-06-03 04:29:09 +0900) +latest-prerequisite time: 2024-06-03 04:29:09 +0900 ................................ Rule for TTL (output/ttl/interpro-uniprot.ttl) @@ -7478,12 +7699,12 @@ Rule for TTL (output/ttl/interpro-uniprot.ttl) Investigating output/ttl/interpro-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-07 07:58:41 +0900 +timestamp: 2024-06-04 03:22:16 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/interpro-uniprot.tsv (2024-04-06 22:49:47 +0900) -latest-prerequisite time: 2024-04-06 22:49:47 +0900 +--output/tsv/interpro-uniprot.tsv (2024-06-03 08:23:00 +0900) +latest-prerequisite time: 2024-06-03 08:23:00 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-ensembl_gene.ttl) @@ -7491,12 +7712,12 @@ Rule for TTL (output/ttl/mgi_gene-ensembl_gene.ttl) Investigating output/ttl/mgi_gene-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:27:51 +0900 +timestamp: 2024-06-04 04:18:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/mgi_gene-ensembl_gene.tsv (2024-05-25 15:08:35 +0900) -latest-prerequisite time: 2024-05-25 15:08:35 +0900 +--output/tsv/mgi_gene-ensembl_gene.tsv (2024-06-03 09:04:42 +0900) +latest-prerequisite time: 2024-06-03 09:04:42 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-hgnc.ttl) @@ -7504,12 +7725,12 @@ Rule for TTL (output/ttl/mgi_gene-hgnc.ttl) Investigating output/ttl/mgi_gene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:27:51 +0900 +timestamp: 2024-06-04 04:18:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/mgi_gene-hgnc.tsv (2024-05-25 15:08:35 +0900) -latest-prerequisite time: 2024-05-25 15:08:35 +0900 +--output/tsv/mgi_gene-hgnc.tsv (2024-06-03 09:04:43 +0900) +latest-prerequisite time: 2024-06-03 09:04:43 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-mgi_allele.ttl) @@ -7517,12 +7738,12 @@ Rule for TTL (output/ttl/mgi_gene-mgi_allele.ttl) Investigating output/ttl/mgi_gene-mgi_allele.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:27:52 +0900 +timestamp: 2024-06-04 04:18:20 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/mgi_gene-mgi_allele.tsv (2024-05-25 15:08:37 +0900) -latest-prerequisite time: 2024-05-25 15:08:37 +0900 +--output/tsv/mgi_gene-mgi_allele.tsv (2024-06-03 09:04:44 +0900) +latest-prerequisite time: 2024-06-03 09:04:44 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-ncbigene.ttl) @@ -7530,12 +7751,12 @@ Rule for TTL (output/ttl/mgi_gene-ncbigene.ttl) Investigating output/ttl/mgi_gene-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:27:53 +0900 +timestamp: 2024-06-04 04:18:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/mgi_gene-ncbigene.tsv (2024-05-25 15:08:37 +0900) -latest-prerequisite time: 2024-05-25 15:08:37 +0900 +--output/tsv/mgi_gene-ncbigene.tsv (2024-06-03 09:04:45 +0900) +latest-prerequisite time: 2024-06-03 09:04:45 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-uniprot.ttl) @@ -7543,12 +7764,12 @@ Rule for TTL (output/ttl/mgi_gene-uniprot.ttl) Investigating output/ttl/mgi_gene-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:27:54 +0900 +timestamp: 2024-06-04 04:18:22 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/mgi_gene-uniprot.tsv (2024-05-25 15:08:38 +0900) -latest-prerequisite time: 2024-05-25 15:08:38 +0900 +--output/tsv/mgi_gene-uniprot.tsv (2024-06-03 09:04:45 +0900) +latest-prerequisite time: 2024-06-03 09:04:45 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-doid.ttl) @@ -7556,12 +7777,12 @@ Rule for TTL (output/ttl/mgi_genotype-doid.ttl) Investigating output/ttl/mgi_genotype-doid.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:27:54 +0900 +timestamp: 2024-06-04 04:18:22 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/mgi_genotype-doid.tsv (2024-05-25 15:08:40 +0900) -latest-prerequisite time: 2024-05-25 15:08:40 +0900 +--output/tsv/mgi_genotype-doid.tsv (2024-06-03 09:04:47 +0900) +latest-prerequisite time: 2024-06-03 09:04:47 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-mgi_allele.ttl) @@ -7569,12 +7790,12 @@ Rule for TTL (output/ttl/mgi_genotype-mgi_allele.ttl) Investigating output/ttl/mgi_genotype-mgi_allele.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:27:55 +0900 +timestamp: 2024-06-04 04:18:23 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/mgi_genotype-mgi_allele.tsv (2024-05-25 15:08:41 +0900) -latest-prerequisite time: 2024-05-25 15:08:41 +0900 +--output/tsv/mgi_genotype-mgi_allele.tsv (2024-06-03 09:04:48 +0900) +latest-prerequisite time: 2024-06-03 09:04:48 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-mp.ttl) @@ -7582,12 +7803,90 @@ Rule for TTL (output/ttl/mgi_genotype-mp.ttl) Investigating output/ttl/mgi_genotype-mp.ttl class: Rake::FileTask task needed: true +timestamp: 2024-06-04 04:18:27 +0900 +pre-requisites: +--output/ttl/ () +--config/dataset.yaml (2024-03-29 17:00:16 +0900) +--output/tsv/mgi_genotype-mp.tsv (2024-06-03 09:04:51 +0900) +latest-prerequisite time: 2024-06-03 09:04:51 +0900 +................................ + +Rule for TTL (output/ttl/mondo-doid.ttl) +------------------------------ +Investigating output/ttl/mondo-doid.ttl +class: Rake::FileTask +task needed: true timestamp: 2024-05-25 19:27:59 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/mgi_genotype-mp.tsv (2024-05-25 15:08:44 +0900) -latest-prerequisite time: 2024-05-25 15:08:44 +0900 +--output/tsv/mondo-doid.tsv (2024-05-25 15:08:45 +0900) +latest-prerequisite time: 2024-05-25 15:08:45 +0900 +................................ + +Rule for TTL (output/ttl/mondo-hp_phenotype.ttl) +------------------------------ +Investigating output/ttl/mondo-hp_phenotype.ttl +class: Rake::FileTask +task needed: true +timestamp: 2024-05-25 19:28:00 +0900 +pre-requisites: +--output/ttl/ () +--config/dataset.yaml (2024-03-29 17:00:16 +0900) +--output/tsv/mondo-hp_phenotype.tsv (2024-05-25 15:08:45 +0900) +latest-prerequisite time: 2024-05-25 15:08:45 +0900 +................................ + +Rule for TTL (output/ttl/mondo-meddra.ttl) +------------------------------ +Investigating output/ttl/mondo-meddra.ttl +class: Rake::FileTask +task needed: true +timestamp: 2024-05-25 19:28:00 +0900 +pre-requisites: +--output/ttl/ () +--config/dataset.yaml (2024-03-29 17:00:16 +0900) +--output/tsv/mondo-meddra.tsv (2024-05-25 15:08:45 +0900) +latest-prerequisite time: 2024-05-25 15:08:45 +0900 +................................ + +Rule for TTL (output/ttl/mondo-mesh.ttl) +------------------------------ +Investigating output/ttl/mondo-mesh.ttl +class: Rake::FileTask +task needed: true +timestamp: 2024-05-25 19:28:00 +0900 +pre-requisites: +--output/ttl/ () +--config/dataset.yaml (2024-03-29 17:00:16 +0900) +--output/tsv/mondo-mesh.tsv (2024-05-25 15:08:46 +0900) +latest-prerequisite time: 2024-05-25 15:08:46 +0900 +................................ + +Rule for TTL (output/ttl/mondo-omim_phenotype.ttl) +------------------------------ +Investigating output/ttl/mondo-omim_phenotype.ttl +class: Rake::FileTask +task needed: true +timestamp: 2024-05-25 19:28:00 +0900 +pre-requisites: +--output/ttl/ () +--config/dataset.yaml (2024-03-29 17:00:16 +0900) +--output/tsv/mondo-omim_phenotype.tsv (2024-05-25 15:08:46 +0900) +latest-prerequisite time: 2024-05-25 15:08:46 +0900 +................................ + +Rule for TTL (output/ttl/mondo-orphanet_phenotype.ttl) +------------------------------ +Investigating output/ttl/mondo-orphanet_phenotype.ttl +class: Rake::FileTask +task needed: true +timestamp: 2024-05-25 19:28:01 +0900 +pre-requisites: +--output/ttl/ () +--config/dataset.yaml (2024-03-29 17:00:16 +0900) +--output/tsv/mondo-orphanet_phenotype.tsv (2024-05-25 15:08:47 +0900) +latest-prerequisite time: 2024-05-25 15:08:47 +0900 ................................ Rule for TTL (output/ttl/ncbigene-ensembl_gene.ttl) @@ -7595,12 +7894,12 @@ Rule for TTL (output/ttl/ncbigene-ensembl_gene.ttl) Investigating output/ttl/ncbigene-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:29:30 +0900 +timestamp: 2024-06-04 04:19:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-ensembl_gene.tsv (2024-05-25 15:09:19 +0900) -latest-prerequisite time: 2024-05-25 15:09:19 +0900 +--output/tsv/ncbigene-ensembl_gene.tsv (2024-06-03 09:05:30 +0900) +latest-prerequisite time: 2024-06-03 09:05:30 +0900 ................................ Rule for TTL (output/ttl/ncbigene-ensembl_protein.ttl) @@ -7608,12 +7907,12 @@ Rule for TTL (output/ttl/ncbigene-ensembl_protein.ttl) Investigating output/ttl/ncbigene-ensembl_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:31:13 +0900 +timestamp: 2024-06-04 04:21:49 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-ensembl_protein.tsv (2024-05-25 15:10:22 +0900) -latest-prerequisite time: 2024-05-25 15:10:22 +0900 +--output/tsv/ncbigene-ensembl_protein.tsv (2024-06-03 09:06:44 +0900) +latest-prerequisite time: 2024-06-03 09:06:44 +0900 ................................ Rule for TTL (output/ttl/ncbigene-ensembl_transcript.ttl) @@ -7621,12 +7920,12 @@ Rule for TTL (output/ttl/ncbigene-ensembl_transcript.ttl) Investigating output/ttl/ncbigene-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:33:04 +0900 +timestamp: 2024-06-04 04:23:49 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-ensembl_transcript.tsv (2024-05-25 15:11:26 +0900) -latest-prerequisite time: 2024-05-25 15:11:26 +0900 +--output/tsv/ncbigene-ensembl_transcript.tsv (2024-06-03 09:07:47 +0900) +latest-prerequisite time: 2024-06-03 09:07:47 +0900 ................................ Rule for TTL (output/ttl/ncbigene-flybase_gene.ttl) @@ -7634,12 +7933,12 @@ Rule for TTL (output/ttl/ncbigene-flybase_gene.ttl) Investigating output/ttl/ncbigene-flybase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:33:05 +0900 +timestamp: 2024-06-04 04:23:50 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-flybase_gene.tsv (2024-05-25 15:12:41 +0900) -latest-prerequisite time: 2024-05-25 15:12:41 +0900 +--output/tsv/ncbigene-flybase_gene.tsv (2024-06-03 09:09:03 +0900) +latest-prerequisite time: 2024-06-03 09:09:03 +0900 ................................ Rule for TTL (output/ttl/ncbigene-go.ttl) @@ -7647,12 +7946,12 @@ Rule for TTL (output/ttl/ncbigene-go.ttl) Investigating output/ttl/ncbigene-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:49:22 +0900 +timestamp: 2024-06-04 04:40:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-go.tsv (2024-05-25 15:17:19 +0900) -latest-prerequisite time: 2024-05-25 15:17:19 +0900 +--output/tsv/ncbigene-go.tsv (2024-06-03 09:14:26 +0900) +latest-prerequisite time: 2024-06-03 09:14:26 +0900 ................................ Rule for TTL (output/ttl/ncbigene-hgnc.ttl) @@ -7660,12 +7959,12 @@ Rule for TTL (output/ttl/ncbigene-hgnc.ttl) Investigating output/ttl/ncbigene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:49:26 +0900 +timestamp: 2024-06-04 04:40:23 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-hgnc.tsv (2024-05-25 15:17:20 +0900) -latest-prerequisite time: 2024-05-25 15:17:20 +0900 +--output/tsv/ncbigene-hgnc.tsv (2024-06-03 09:14:27 +0900) +latest-prerequisite time: 2024-06-03 09:14:27 +0900 ................................ Rule for TTL (output/ttl/ncbigene-mgi_gene.ttl) @@ -7673,12 +7972,12 @@ Rule for TTL (output/ttl/ncbigene-mgi_gene.ttl) Investigating output/ttl/ncbigene-mgi_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:49:27 +0900 +timestamp: 2024-06-04 04:40:24 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-mgi_gene.tsv (2024-05-25 15:18:22 +0900) -latest-prerequisite time: 2024-05-25 15:18:22 +0900 +--output/tsv/ncbigene-mgi_gene.tsv (2024-06-03 09:15:29 +0900) +latest-prerequisite time: 2024-06-03 09:15:29 +0900 ................................ Rule for TTL (output/ttl/ncbigene-mirbase.ttl) @@ -7686,12 +7985,12 @@ Rule for TTL (output/ttl/ncbigene-mirbase.ttl) Investigating output/ttl/ncbigene-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:49:27 +0900 +timestamp: 2024-06-04 04:40:24 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-mirbase.tsv (2024-05-25 15:20:05 +0900) -latest-prerequisite time: 2024-05-25 15:20:05 +0900 +--output/tsv/ncbigene-mirbase.tsv (2024-06-03 09:17:13 +0900) +latest-prerequisite time: 2024-06-03 09:17:13 +0900 ................................ Rule for TTL (output/ttl/ncbigene-omim_gene.ttl) @@ -7699,12 +7998,12 @@ Rule for TTL (output/ttl/ncbigene-omim_gene.ttl) Investigating output/ttl/ncbigene-omim_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:49:28 +0900 +timestamp: 2024-06-04 04:40:25 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-omim_gene.tsv (2024-05-25 15:20:05 +0900) -latest-prerequisite time: 2024-05-25 15:20:05 +0900 +--output/tsv/ncbigene-omim_gene.tsv (2024-06-03 09:17:14 +0900) +latest-prerequisite time: 2024-06-03 09:17:14 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_genomic.ttl) @@ -7712,12 +8011,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_genomic.ttl) Investigating output/ttl/ncbigene-refseq_genomic.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 19:49:30 +0900 +timestamp: 2024-06-04 04:40:27 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-refseq_genomic.tsv (2024-05-25 15:23:59 +0900) -latest-prerequisite time: 2024-05-25 15:23:59 +0900 +--output/tsv/ncbigene-refseq_genomic.tsv (2024-06-03 09:21:28 +0900) +latest-prerequisite time: 2024-06-03 09:21:28 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_protein.ttl) @@ -7725,12 +8024,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_protein.ttl) Investigating output/ttl/ncbigene-refseq_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 20:01:47 +0900 +timestamp: 2024-06-04 04:53:03 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-refseq_protein.tsv (2024-05-25 15:28:16 +0900) -latest-prerequisite time: 2024-05-25 15:28:16 +0900 +--output/tsv/ncbigene-refseq_protein.tsv (2024-06-03 09:26:29 +0900) +latest-prerequisite time: 2024-06-03 09:26:29 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_rna.ttl) @@ -7738,12 +8037,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_rna.ttl) Investigating output/ttl/ncbigene-refseq_rna.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 20:12:18 +0900 +timestamp: 2024-06-04 05:03:33 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-refseq_rna.tsv (2024-05-25 15:32:01 +0900) -latest-prerequisite time: 2024-05-25 15:32:01 +0900 +--output/tsv/ncbigene-refseq_rna.tsv (2024-06-03 09:30:18 +0900) +latest-prerequisite time: 2024-06-03 09:30:18 +0900 ................................ Rule for TTL (output/ttl/ncbigene-rgd.ttl) @@ -7751,12 +8050,12 @@ Rule for TTL (output/ttl/ncbigene-rgd.ttl) Investigating output/ttl/ncbigene-rgd.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 20:12:21 +0900 +timestamp: 2024-06-04 05:03:36 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-rgd.tsv (2024-05-25 15:33:03 +0900) -latest-prerequisite time: 2024-05-25 15:33:03 +0900 +--output/tsv/ncbigene-rgd.tsv (2024-06-03 09:31:19 +0900) +latest-prerequisite time: 2024-06-03 09:31:19 +0900 ................................ Rule for TTL (output/ttl/ncbigene-sgd.ttl) @@ -7764,12 +8063,12 @@ Rule for TTL (output/ttl/ncbigene-sgd.ttl) Investigating output/ttl/ncbigene-sgd.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 20:12:21 +0900 +timestamp: 2024-06-04 05:03:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-sgd.tsv (2024-05-25 15:34:14 +0900) -latest-prerequisite time: 2024-05-25 15:34:14 +0900 +--output/tsv/ncbigene-sgd.tsv (2024-06-03 09:32:31 +0900) +latest-prerequisite time: 2024-06-03 09:32:31 +0900 ................................ Rule for TTL (output/ttl/ncbigene-tair.ttl) @@ -7777,12 +8076,12 @@ Rule for TTL (output/ttl/ncbigene-tair.ttl) Investigating output/ttl/ncbigene-tair.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 20:12:22 +0900 +timestamp: 2024-06-04 05:03:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-tair.tsv (2024-05-25 15:35:25 +0900) -latest-prerequisite time: 2024-05-25 15:35:25 +0900 +--output/tsv/ncbigene-tair.tsv (2024-06-03 09:33:42 +0900) +latest-prerequisite time: 2024-06-03 09:33:42 +0900 ................................ Rule for TTL (output/ttl/ncbigene-taxonomy.ttl) @@ -7790,12 +8089,12 @@ Rule for TTL (output/ttl/ncbigene-taxonomy.ttl) Investigating output/ttl/ncbigene-taxonomy.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 20:20:26 +0900 +timestamp: 2024-06-04 05:11:52 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-taxonomy.tsv (2024-05-25 15:36:08 +0900) -latest-prerequisite time: 2024-05-25 15:36:08 +0900 +--output/tsv/ncbigene-taxonomy.tsv (2024-06-03 09:34:28 +0900) +latest-prerequisite time: 2024-06-03 09:34:28 +0900 ................................ Rule for TTL (output/ttl/ncbigene-vgnc.ttl) @@ -7803,12 +8102,12 @@ Rule for TTL (output/ttl/ncbigene-vgnc.ttl) Investigating output/ttl/ncbigene-vgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 20:20:30 +0900 +timestamp: 2024-06-04 05:11:56 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-vgnc.tsv (2024-05-25 15:37:20 +0900) -latest-prerequisite time: 2024-05-25 15:37:20 +0900 +--output/tsv/ncbigene-vgnc.tsv (2024-06-03 09:35:40 +0900) +latest-prerequisite time: 2024-06-03 09:35:40 +0900 ................................ Rule for TTL (output/ttl/ncbigene-wormbase_gene.ttl) @@ -7816,12 +8115,12 @@ Rule for TTL (output/ttl/ncbigene-wormbase_gene.ttl) Investigating output/ttl/ncbigene-wormbase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 20:20:30 +0900 +timestamp: 2024-06-04 05:11:57 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-wormbase_gene.tsv (2024-05-25 15:38:31 +0900) -latest-prerequisite time: 2024-05-25 15:38:31 +0900 +--output/tsv/ncbigene-wormbase_gene.tsv (2024-06-03 09:36:51 +0900) +latest-prerequisite time: 2024-06-03 09:36:51 +0900 ................................ Rule for TTL (output/ttl/ncbigene-xenbase_gene.ttl) @@ -7829,12 +8128,12 @@ Rule for TTL (output/ttl/ncbigene-xenbase_gene.ttl) Investigating output/ttl/ncbigene-xenbase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 20:20:31 +0900 +timestamp: 2024-06-04 05:11:57 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-xenbase_gene.tsv (2024-05-25 15:39:42 +0900) -latest-prerequisite time: 2024-05-25 15:39:42 +0900 +--output/tsv/ncbigene-xenbase_gene.tsv (2024-06-03 09:38:03 +0900) +latest-prerequisite time: 2024-06-03 09:38:03 +0900 ................................ Rule for TTL (output/ttl/ncbigene-zfin_gene.ttl) @@ -7842,12 +8141,12 @@ Rule for TTL (output/ttl/ncbigene-zfin_gene.ttl) Investigating output/ttl/ncbigene-zfin_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 20:20:31 +0900 +timestamp: 2024-06-04 05:11:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/ncbigene-zfin_gene.tsv (2024-05-25 15:40:53 +0900) -latest-prerequisite time: 2024-05-25 15:40:53 +0900 +--output/tsv/ncbigene-zfin_gene.tsv (2024-06-03 09:39:15 +0900) +latest-prerequisite time: 2024-06-03 09:39:15 +0900 ................................ Rule for TTL (output/ttl/oma_protein-ensembl_gene.ttl) @@ -7907,12 +8206,12 @@ Rule for TTL (output/ttl/prosite-prosite_prorule.ttl) Investigating output/ttl/prosite-prosite_prorule.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 00:53:44 +0900 +timestamp: 2024-06-04 05:12:28 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/prosite-prosite_prorule.tsv (2024-03-31 09:24:09 +0900) -latest-prerequisite time: 2024-03-31 09:24:09 +0900 +--output/tsv/prosite-prosite_prorule.tsv (2024-06-03 09:39:36 +0900) +latest-prerequisite time: 2024-06-03 09:39:36 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-chebi.ttl) @@ -7920,12 +8219,12 @@ Rule for TTL (output/ttl/reactome_pathway-chebi.ttl) Investigating output/ttl/reactome_pathway-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:02:45 +0900 +timestamp: 2024-06-04 05:55:25 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/reactome_pathway-chebi.tsv (2024-05-25 15:48:05 +0900) -latest-prerequisite time: 2024-05-25 15:48:05 +0900 +--output/tsv/reactome_pathway-chebi.tsv (2024-06-03 09:46:06 +0900) +latest-prerequisite time: 2024-06-03 09:46:06 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-go.ttl) @@ -7933,12 +8232,12 @@ Rule for TTL (output/ttl/reactome_pathway-go.ttl) Investigating output/ttl/reactome_pathway-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:02:45 +0900 +timestamp: 2024-06-04 05:55:26 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/reactome_pathway-go.tsv (2024-05-25 15:48:06 +0900) -latest-prerequisite time: 2024-05-25 15:48:06 +0900 +--output/tsv/reactome_pathway-go.tsv (2024-06-03 09:46:07 +0900) +latest-prerequisite time: 2024-06-03 09:46:07 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-iuphar_ligand.ttl) @@ -7946,12 +8245,12 @@ Rule for TTL (output/ttl/reactome_pathway-iuphar_ligand.ttl) Investigating output/ttl/reactome_pathway-iuphar_ligand.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:02:46 +0900 +timestamp: 2024-06-04 05:55:26 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/reactome_pathway-iuphar_ligand.tsv (2024-05-25 15:48:06 +0900) -latest-prerequisite time: 2024-05-25 15:48:06 +0900 +--output/tsv/reactome_pathway-iuphar_ligand.tsv (2024-06-03 09:46:07 +0900) +latest-prerequisite time: 2024-06-03 09:46:07 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-mirbase.ttl) @@ -7959,12 +8258,12 @@ Rule for TTL (output/ttl/reactome_pathway-mirbase.ttl) Investigating output/ttl/reactome_pathway-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:02:46 +0900 +timestamp: 2024-06-04 05:55:26 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/reactome_pathway-mirbase.tsv (2024-05-25 15:48:06 +0900) -latest-prerequisite time: 2024-05-25 15:48:06 +0900 +--output/tsv/reactome_pathway-mirbase.tsv (2024-06-03 09:46:07 +0900) +latest-prerequisite time: 2024-06-03 09:46:07 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-reactome_reaction.ttl) @@ -7972,12 +8271,12 @@ Rule for TTL (output/ttl/reactome_pathway-reactome_reaction.ttl) Investigating output/ttl/reactome_pathway-reactome_reaction.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:02:50 +0900 +timestamp: 2024-06-04 05:55:30 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/reactome_pathway-reactome_reaction.tsv (2024-05-25 15:48:08 +0900) -latest-prerequisite time: 2024-05-25 15:48:08 +0900 +--output/tsv/reactome_pathway-reactome_reaction.tsv (2024-06-03 09:46:09 +0900) +latest-prerequisite time: 2024-06-03 09:46:09 +0900 ................................ Rule for TTL (output/ttl/reactome_pathway-uniprot.ttl) @@ -7985,12 +8284,12 @@ Rule for TTL (output/ttl/reactome_pathway-uniprot.ttl) Investigating output/ttl/reactome_pathway-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:02:57 +0900 +timestamp: 2024-06-04 05:55:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/reactome_pathway-uniprot.tsv (2024-05-25 15:48:09 +0900) -latest-prerequisite time: 2024-05-25 15:48:09 +0900 +--output/tsv/reactome_pathway-uniprot.tsv (2024-06-03 09:46:10 +0900) +latest-prerequisite time: 2024-06-03 09:46:10 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-chebi.ttl) @@ -7998,12 +8297,12 @@ Rule for TTL (output/ttl/reactome_reaction-chebi.ttl) Investigating output/ttl/reactome_reaction-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:02:59 +0900 +timestamp: 2024-06-04 05:55:39 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/reactome_reaction-chebi.tsv (2024-05-25 15:48:09 +0900) -latest-prerequisite time: 2024-05-25 15:48:09 +0900 +--output/tsv/reactome_reaction-chebi.tsv (2024-06-03 09:46:11 +0900) +latest-prerequisite time: 2024-06-03 09:46:11 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-go.ttl) @@ -8011,12 +8310,12 @@ Rule for TTL (output/ttl/reactome_reaction-go.ttl) Investigating output/ttl/reactome_reaction-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:02:59 +0900 +timestamp: 2024-06-04 05:55:39 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/reactome_reaction-go.tsv (2024-05-25 15:48:10 +0900) -latest-prerequisite time: 2024-05-25 15:48:10 +0900 +--output/tsv/reactome_reaction-go.tsv (2024-06-03 09:46:11 +0900) +latest-prerequisite time: 2024-06-03 09:46:11 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-iuphar_ligand.ttl) @@ -8024,12 +8323,12 @@ Rule for TTL (output/ttl/reactome_reaction-iuphar_ligand.ttl) Investigating output/ttl/reactome_reaction-iuphar_ligand.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:02:59 +0900 +timestamp: 2024-06-04 05:55:40 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/reactome_reaction-iuphar_ligand.tsv (2024-05-25 15:48:10 +0900) -latest-prerequisite time: 2024-05-25 15:48:10 +0900 +--output/tsv/reactome_reaction-iuphar_ligand.tsv (2024-06-03 09:46:11 +0900) +latest-prerequisite time: 2024-06-03 09:46:11 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-mirbase.ttl) @@ -8037,12 +8336,12 @@ Rule for TTL (output/ttl/reactome_reaction-mirbase.ttl) Investigating output/ttl/reactome_reaction-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:02:59 +0900 +timestamp: 2024-06-04 05:55:40 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/reactome_reaction-mirbase.tsv (2024-05-25 15:48:10 +0900) -latest-prerequisite time: 2024-05-25 15:48:10 +0900 +--output/tsv/reactome_reaction-mirbase.tsv (2024-06-03 09:46:12 +0900) +latest-prerequisite time: 2024-06-03 09:46:12 +0900 ................................ Rule for TTL (output/ttl/reactome_reaction-uniprot.ttl) @@ -8050,12 +8349,12 @@ Rule for TTL (output/ttl/reactome_reaction-uniprot.ttl) Investigating output/ttl/reactome_reaction-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:03:05 +0900 +timestamp: 2024-06-04 05:55:45 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/reactome_reaction-uniprot.tsv (2024-05-25 15:48:11 +0900) -latest-prerequisite time: 2024-05-25 15:48:11 +0900 +--output/tsv/reactome_reaction-uniprot.tsv (2024-06-03 09:46:13 +0900) +latest-prerequisite time: 2024-06-03 09:46:13 +0900 ................................ Rule for TTL (output/ttl/refseq_protein-uniprot.ttl) @@ -8063,12 +8362,12 @@ Rule for TTL (output/ttl/refseq_protein-uniprot.ttl) Investigating output/ttl/refseq_protein-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:53:53 +0900 +timestamp: 2024-06-04 06:47:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/refseq_protein-uniprot.tsv (2024-05-25 15:54:54 +0900) -latest-prerequisite time: 2024-05-25 15:54:54 +0900 +--output/tsv/refseq_protein-uniprot.tsv (2024-06-03 09:52:50 +0900) +latest-prerequisite time: 2024-06-03 09:52:50 +0900 ................................ Rule for TTL (output/ttl/refseq_rna-dbsnp.ttl) @@ -8167,12 +8466,12 @@ Rule for TTL (output/ttl/rhea-chebi.ttl) Investigating output/ttl/rhea-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 02:38:15 +0900 +timestamp: 2024-06-04 06:47:22 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/rhea-chebi.tsv (2024-03-31 09:38:01 +0900) -latest-prerequisite time: 2024-03-31 09:38:01 +0900 +--output/tsv/rhea-chebi.tsv (2024-06-03 09:52:51 +0900) +latest-prerequisite time: 2024-06-03 09:52:51 +0900 ................................ Rule for TTL (output/ttl/rhea-ec.ttl) @@ -8180,12 +8479,12 @@ Rule for TTL (output/ttl/rhea-ec.ttl) Investigating output/ttl/rhea-ec.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 02:38:16 +0900 +timestamp: 2024-06-04 06:47:22 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/rhea-ec.tsv (2024-03-31 09:38:01 +0900) -latest-prerequisite time: 2024-03-31 09:38:01 +0900 +--output/tsv/rhea-ec.tsv (2024-06-03 09:52:51 +0900) +latest-prerequisite time: 2024-06-03 09:52:51 +0900 ................................ Rule for TTL (output/ttl/rhea-go.ttl) @@ -8193,12 +8492,12 @@ Rule for TTL (output/ttl/rhea-go.ttl) Investigating output/ttl/rhea-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 02:38:16 +0900 +timestamp: 2024-06-04 06:47:22 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/rhea-go.tsv (2024-03-31 09:38:02 +0900) -latest-prerequisite time: 2024-03-31 09:38:02 +0900 +--output/tsv/rhea-go.tsv (2024-06-03 09:52:52 +0900) +latest-prerequisite time: 2024-06-03 09:52:52 +0900 ................................ Rule for TTL (output/ttl/rhea-pubmed.ttl) @@ -8206,12 +8505,12 @@ Rule for TTL (output/ttl/rhea-pubmed.ttl) Investigating output/ttl/rhea-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 02:38:17 +0900 +timestamp: 2024-06-04 06:47:23 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/rhea-pubmed.tsv (2024-03-31 09:38:02 +0900) -latest-prerequisite time: 2024-03-31 09:38:02 +0900 +--output/tsv/rhea-pubmed.tsv (2024-06-03 09:52:52 +0900) +latest-prerequisite time: 2024-06-03 09:52:52 +0900 ................................ Rule for TTL (output/ttl/rhea-reactome_reaction.ttl) @@ -8219,12 +8518,12 @@ Rule for TTL (output/ttl/rhea-reactome_reaction.ttl) Investigating output/ttl/rhea-reactome_reaction.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 02:38:17 +0900 +timestamp: 2024-06-04 06:47:24 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/rhea-reactome_reaction.tsv (2024-03-31 09:38:03 +0900) -latest-prerequisite time: 2024-03-31 09:38:03 +0900 +--output/tsv/rhea-reactome_reaction.tsv (2024-06-03 09:52:53 +0900) +latest-prerequisite time: 2024-06-03 09:52:53 +0900 ................................ Rule for TTL (output/ttl/rhea-uniprot.ttl) @@ -8232,12 +8531,12 @@ Rule for TTL (output/ttl/rhea-uniprot.ttl) Investigating output/ttl/rhea-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 02:44:00 +0900 +timestamp: 2024-06-04 06:53:00 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/rhea-uniprot.tsv (2024-03-31 09:38:56 +0900) -latest-prerequisite time: 2024-03-31 09:38:56 +0900 +--output/tsv/rhea-uniprot.tsv (2024-06-03 09:53:30 +0900) +latest-prerequisite time: 2024-06-03 09:53:30 +0900 ................................ Rule for TTL (output/ttl/sra_accession-bioproject.ttl) @@ -8245,12 +8544,12 @@ Rule for TTL (output/ttl/sra_accession-bioproject.ttl) Investigating output/ttl/sra_accession-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:54:01 +0900 +timestamp: 2024-06-04 06:53:06 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_accession-bioproject.tsv (2024-05-25 15:56:53 +0900) -latest-prerequisite time: 2024-05-25 15:56:53 +0900 +--output/tsv/sra_accession-bioproject.tsv (2024-06-03 09:55:12 +0900) +latest-prerequisite time: 2024-06-03 09:55:12 +0900 ................................ Rule for TTL (output/ttl/sra_accession-biosample.ttl) @@ -8258,12 +8557,12 @@ Rule for TTL (output/ttl/sra_accession-biosample.ttl) Investigating output/ttl/sra_accession-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:59:05 +0900 +timestamp: 2024-06-04 06:58:13 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_accession-biosample.tsv (2024-05-25 16:04:51 +0900) -latest-prerequisite time: 2024-05-25 16:04:51 +0900 +--output/tsv/sra_accession-biosample.tsv (2024-06-03 10:02:57 +0900) +latest-prerequisite time: 2024-06-03 10:02:57 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_analysis.ttl) @@ -8271,12 +8570,12 @@ Rule for TTL (output/ttl/sra_accession-sra_analysis.ttl) Investigating output/ttl/sra_accession-sra_analysis.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 21:59:08 +0900 +timestamp: 2024-06-04 06:58:16 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_accession-sra_analysis.tsv (2024-05-25 16:05:55 +0900) -latest-prerequisite time: 2024-05-25 16:05:55 +0900 +--output/tsv/sra_accession-sra_analysis.tsv (2024-06-03 10:04:01 +0900) +latest-prerequisite time: 2024-06-03 10:04:01 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_experiment.ttl) @@ -8284,12 +8583,12 @@ Rule for TTL (output/ttl/sra_accession-sra_experiment.ttl) Investigating output/ttl/sra_accession-sra_experiment.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 22:04:47 +0900 +timestamp: 2024-06-04 07:04:01 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_accession-sra_experiment.tsv (2024-05-25 16:12:23 +0900) -latest-prerequisite time: 2024-05-25 16:12:23 +0900 +--output/tsv/sra_accession-sra_experiment.tsv (2024-06-03 10:10:29 +0900) +latest-prerequisite time: 2024-06-03 10:10:29 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_project.ttl) @@ -8297,12 +8596,12 @@ Rule for TTL (output/ttl/sra_accession-sra_project.ttl) Investigating output/ttl/sra_accession-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 22:04:52 +0900 +timestamp: 2024-06-04 07:04:07 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_accession-sra_project.tsv (2024-05-25 16:13:27 +0900) -latest-prerequisite time: 2024-05-25 16:13:27 +0900 +--output/tsv/sra_accession-sra_project.tsv (2024-06-03 10:11:34 +0900) +latest-prerequisite time: 2024-06-03 10:11:34 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_run.ttl) @@ -8310,12 +8609,12 @@ Rule for TTL (output/ttl/sra_accession-sra_run.ttl) Investigating output/ttl/sra_accession-sra_run.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 22:11:04 +0900 +timestamp: 2024-06-04 07:10:22 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_accession-sra_run.tsv (2024-05-25 16:20:53 +0900) -latest-prerequisite time: 2024-05-25 16:20:53 +0900 +--output/tsv/sra_accession-sra_run.tsv (2024-06-03 10:18:45 +0900) +latest-prerequisite time: 2024-06-03 10:18:45 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_sample.ttl) @@ -8323,12 +8622,12 @@ Rule for TTL (output/ttl/sra_accession-sra_sample.ttl) Investigating output/ttl/sra_accession-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 22:16:11 +0900 +timestamp: 2024-06-04 07:15:51 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_accession-sra_sample.tsv (2024-05-25 16:27:09 +0900) -latest-prerequisite time: 2024-05-25 16:27:09 +0900 +--output/tsv/sra_accession-sra_sample.tsv (2024-06-03 10:24:51 +0900) +latest-prerequisite time: 2024-06-03 10:24:51 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-bioproject.ttl) @@ -8336,12 +8635,12 @@ Rule for TTL (output/ttl/sra_experiment-bioproject.ttl) Investigating output/ttl/sra_experiment-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 22:20:57 +0900 +timestamp: 2024-06-04 07:20:51 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_experiment-bioproject.tsv (2024-05-25 16:30:38 +0900) -latest-prerequisite time: 2024-05-25 16:30:38 +0900 +--output/tsv/sra_experiment-bioproject.tsv (2024-06-03 10:28:11 +0900) +latest-prerequisite time: 2024-06-03 10:28:11 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-biosample.ttl) @@ -8349,12 +8648,12 @@ Rule for TTL (output/ttl/sra_experiment-biosample.ttl) Investigating output/ttl/sra_experiment-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 22:25:08 +0900 +timestamp: 2024-06-04 07:25:10 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_experiment-biosample.tsv (2024-05-25 16:34:03 +0900) -latest-prerequisite time: 2024-05-25 16:34:03 +0900 +--output/tsv/sra_experiment-biosample.tsv (2024-06-03 10:31:27 +0900) +latest-prerequisite time: 2024-06-03 10:31:27 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-sra_project.ttl) @@ -8362,12 +8661,12 @@ Rule for TTL (output/ttl/sra_experiment-sra_project.ttl) Investigating output/ttl/sra_experiment-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 22:29:54 +0900 +timestamp: 2024-06-04 07:30:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_experiment-sra_project.tsv (2024-05-25 16:37:02 +0900) -latest-prerequisite time: 2024-05-25 16:37:02 +0900 +--output/tsv/sra_experiment-sra_project.tsv (2024-06-03 10:34:12 +0900) +latest-prerequisite time: 2024-06-03 10:34:12 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-sra_sample.ttl) @@ -8375,12 +8674,12 @@ Rule for TTL (output/ttl/sra_experiment-sra_sample.ttl) Investigating output/ttl/sra_experiment-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 22:34:49 +0900 +timestamp: 2024-06-04 07:35:26 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_experiment-sra_sample.tsv (2024-05-25 16:39:53 +0900) -latest-prerequisite time: 2024-05-25 16:39:53 +0900 +--output/tsv/sra_experiment-sra_sample.tsv (2024-06-03 10:36:52 +0900) +latest-prerequisite time: 2024-06-03 10:36:52 +0900 ................................ Rule for TTL (output/ttl/sra_project-bioproject.ttl) @@ -8388,12 +8687,12 @@ Rule for TTL (output/ttl/sra_project-bioproject.ttl) Investigating output/ttl/sra_project-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 22:34:54 +0900 +timestamp: 2024-06-04 07:35:32 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_project-bioproject.tsv (2024-05-25 16:40:57 +0900) -latest-prerequisite time: 2024-05-25 16:40:57 +0900 +--output/tsv/sra_project-bioproject.tsv (2024-06-03 10:37:57 +0900) +latest-prerequisite time: 2024-06-03 10:37:57 +0900 ................................ Rule for TTL (output/ttl/sra_run-bioproject.ttl) @@ -8401,12 +8700,12 @@ Rule for TTL (output/ttl/sra_run-bioproject.ttl) Investigating output/ttl/sra_run-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 22:39:39 +0900 +timestamp: 2024-06-04 07:40:28 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_run-bioproject.tsv (2024-05-25 16:44:43 +0900) -latest-prerequisite time: 2024-05-25 16:44:43 +0900 +--output/tsv/sra_run-bioproject.tsv (2024-06-03 10:41:48 +0900) +latest-prerequisite time: 2024-06-03 10:41:48 +0900 ................................ Rule for TTL (output/ttl/sra_run-biosample.ttl) @@ -8414,12 +8713,12 @@ Rule for TTL (output/ttl/sra_run-biosample.ttl) Investigating output/ttl/sra_run-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 22:44:16 +0900 +timestamp: 2024-06-04 07:45:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_run-biosample.tsv (2024-05-25 16:48:41 +0900) -latest-prerequisite time: 2024-05-25 16:48:41 +0900 +--output/tsv/sra_run-biosample.tsv (2024-06-03 10:45:29 +0900) +latest-prerequisite time: 2024-06-03 10:45:29 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_experiment.ttl) @@ -8427,12 +8726,12 @@ Rule for TTL (output/ttl/sra_run-sra_experiment.ttl) Investigating output/ttl/sra_run-sra_experiment.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 22:49:30 +0900 +timestamp: 2024-06-04 07:50:44 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_run-sra_experiment.tsv (2024-05-25 16:51:41 +0900) -latest-prerequisite time: 2024-05-25 16:51:41 +0900 +--output/tsv/sra_run-sra_experiment.tsv (2024-06-03 10:48:21 +0900) +latest-prerequisite time: 2024-06-03 10:48:21 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_project.ttl) @@ -8440,12 +8739,12 @@ Rule for TTL (output/ttl/sra_run-sra_project.ttl) Investigating output/ttl/sra_run-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 22:54:06 +0900 +timestamp: 2024-06-04 07:55:28 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_run-sra_project.tsv (2024-05-25 16:54:49 +0900) -latest-prerequisite time: 2024-05-25 16:54:49 +0900 +--output/tsv/sra_run-sra_project.tsv (2024-06-03 10:51:22 +0900) +latest-prerequisite time: 2024-06-03 10:51:22 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_sample.ttl) @@ -8453,12 +8752,12 @@ Rule for TTL (output/ttl/sra_run-sra_sample.ttl) Investigating output/ttl/sra_run-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 22:58:52 +0900 +timestamp: 2024-06-04 08:00:14 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_run-sra_sample.tsv (2024-05-25 16:58:05 +0900) -latest-prerequisite time: 2024-05-25 16:58:05 +0900 +--output/tsv/sra_run-sra_sample.tsv (2024-06-03 10:54:19 +0900) +latest-prerequisite time: 2024-06-03 10:54:19 +0900 ................................ Rule for TTL (output/ttl/sra_sample-biosample.ttl) @@ -8466,12 +8765,12 @@ Rule for TTL (output/ttl/sra_sample-biosample.ttl) Investigating output/ttl/sra_sample-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 23:03:06 +0900 +timestamp: 2024-06-04 08:04:26 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/sra_sample-biosample.tsv (2024-05-25 17:01:13 +0900) -latest-prerequisite time: 2024-05-25 17:01:13 +0900 +--output/tsv/sra_sample-biosample.tsv (2024-06-03 10:57:16 +0900) +latest-prerequisite time: 2024-06-03 10:57:16 +0900 ................................ Rule for TTL (output/ttl/swisslipids-chebi.ttl) @@ -8479,12 +8778,12 @@ Rule for TTL (output/ttl/swisslipids-chebi.ttl) Investigating output/ttl/swisslipids-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 23:03:07 +0900 +timestamp: 2024-06-04 08:04:28 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/swisslipids-chebi.tsv (2024-05-25 17:01:27 +0900) -latest-prerequisite time: 2024-05-25 17:01:27 +0900 +--output/tsv/swisslipids-chebi.tsv (2024-06-03 10:57:31 +0900) +latest-prerequisite time: 2024-06-03 10:57:31 +0900 ................................ Rule for TTL (output/ttl/swisslipids-hmdb.ttl) @@ -8492,12 +8791,12 @@ Rule for TTL (output/ttl/swisslipids-hmdb.ttl) Investigating output/ttl/swisslipids-hmdb.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 23:03:07 +0900 +timestamp: 2024-06-04 08:04:28 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/swisslipids-hmdb.tsv (2024-05-25 17:01:41 +0900) -latest-prerequisite time: 2024-05-25 17:01:41 +0900 +--output/tsv/swisslipids-hmdb.tsv (2024-06-03 10:57:45 +0900) +latest-prerequisite time: 2024-06-03 10:57:45 +0900 ................................ Rule for TTL (output/ttl/swisslipids-inchi_key.ttl) @@ -8505,12 +8804,12 @@ Rule for TTL (output/ttl/swisslipids-inchi_key.ttl) Investigating output/ttl/swisslipids-inchi_key.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 23:03:13 +0900 +timestamp: 2024-06-04 08:04:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/swisslipids-inchi_key.tsv (2024-05-25 17:01:54 +0900) -latest-prerequisite time: 2024-05-25 17:01:54 +0900 +--output/tsv/swisslipids-inchi_key.tsv (2024-06-03 10:57:57 +0900) +latest-prerequisite time: 2024-06-03 10:57:57 +0900 ................................ Rule for TTL (output/ttl/taxonomy-pubmed.ttl) @@ -8518,12 +8817,12 @@ Rule for TTL (output/ttl/taxonomy-pubmed.ttl) Investigating output/ttl/taxonomy-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-25 23:03:13 +0900 +timestamp: 2024-06-04 08:04:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/taxonomy-pubmed.tsv (2024-05-25 17:01:55 +0900) -latest-prerequisite time: 2024-05-25 17:01:55 +0900 +--output/tsv/taxonomy-pubmed.tsv (2024-06-03 10:57:58 +0900) +latest-prerequisite time: 2024-06-03 10:57:58 +0900 ................................ Rule for TTL (output/ttl/uniprot-chembl_target.ttl) @@ -8531,12 +8830,12 @@ Rule for TTL (output/ttl/uniprot-chembl_target.ttl) Investigating output/ttl/uniprot-chembl_target.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 08:08:35 +0900 +timestamp: 2024-06-04 12:35:20 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-chembl_target.tsv (2024-03-31 11:28:49 +0900) -latest-prerequisite time: 2024-03-31 11:28:49 +0900 +--output/tsv/uniprot-chembl_target.tsv (2024-06-03 11:43:22 +0900) +latest-prerequisite time: 2024-06-03 11:43:22 +0900 ................................ Rule for TTL (output/ttl/uniprot-dbsnp.ttl) @@ -8544,12 +8843,12 @@ Rule for TTL (output/ttl/uniprot-dbsnp.ttl) Investigating output/ttl/uniprot-dbsnp.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 08:08:36 +0900 +timestamp: 2024-06-04 12:35:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-dbsnp.tsv (2024-03-31 11:29:13 +0900) -latest-prerequisite time: 2024-03-31 11:29:13 +0900 +--output/tsv/uniprot-dbsnp.tsv (2024-06-03 11:43:46 +0900) +latest-prerequisite time: 2024-06-03 11:43:46 +0900 ................................ Rule for TTL (output/ttl/uniprot-ec.ttl) @@ -8557,12 +8856,12 @@ Rule for TTL (output/ttl/uniprot-ec.ttl) Investigating output/ttl/uniprot-ec.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 08:14:09 +0900 +timestamp: 2024-06-04 12:40:36 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-ec.tsv (2024-03-31 11:57:55 +0900) -latest-prerequisite time: 2024-03-31 11:57:55 +0900 +--output/tsv/uniprot-ec.tsv (2024-06-03 12:12:40 +0900) +latest-prerequisite time: 2024-06-03 12:12:40 +0900 ................................ Rule for TTL (output/ttl/uniprot-ensembl_gene.ttl) @@ -8570,12 +8869,12 @@ Rule for TTL (output/ttl/uniprot-ensembl_gene.ttl) Investigating output/ttl/uniprot-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 08:15:32 +0900 +timestamp: 2024-06-04 12:41:57 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-ensembl_gene.tsv (2024-03-31 12:46:01 +0900) -latest-prerequisite time: 2024-03-31 12:46:01 +0900 +--output/tsv/uniprot-ensembl_gene.tsv (2024-06-03 12:58:46 +0900) +latest-prerequisite time: 2024-06-03 12:58:46 +0900 ................................ Rule for TTL (output/ttl/uniprot-ensembl_protein.ttl) @@ -8583,12 +8882,12 @@ Rule for TTL (output/ttl/uniprot-ensembl_protein.ttl) Investigating output/ttl/uniprot-ensembl_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 08:17:03 +0900 +timestamp: 2024-06-04 12:43:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-ensembl_protein.tsv (2024-03-31 13:33:52 +0900) -latest-prerequisite time: 2024-03-31 13:33:52 +0900 +--output/tsv/uniprot-ensembl_protein.tsv (2024-06-03 13:45:06 +0900) +latest-prerequisite time: 2024-06-03 13:45:06 +0900 ................................ Rule for TTL (output/ttl/uniprot-ensembl_transcript.ttl) @@ -8596,12 +8895,12 @@ Rule for TTL (output/ttl/uniprot-ensembl_transcript.ttl) Investigating output/ttl/uniprot-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 08:18:27 +0900 +timestamp: 2024-06-04 12:44:45 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-ensembl_transcript.tsv (2024-03-31 14:21:45 +0900) -latest-prerequisite time: 2024-03-31 14:21:45 +0900 +--output/tsv/uniprot-ensembl_transcript.tsv (2024-06-03 14:30:36 +0900) +latest-prerequisite time: 2024-06-03 14:30:36 +0900 ................................ Rule for TTL (output/ttl/uniprot-go.ttl) @@ -8609,12 +8908,12 @@ Rule for TTL (output/ttl/uniprot-go.ttl) Investigating output/ttl/uniprot-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 10:37:30 +0900 +timestamp: 2024-06-04 16:04:55 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-go.tsv (2024-03-31 14:38:14 +0900) -latest-prerequisite time: 2024-03-31 14:38:14 +0900 +--output/tsv/uniprot-go.tsv (2024-06-03 14:50:30 +0900) +latest-prerequisite time: 2024-06-03 14:50:30 +0900 ................................ Rule for TTL (output/ttl/uniprot-hgnc.ttl) @@ -8622,12 +8921,12 @@ Rule for TTL (output/ttl/uniprot-hgnc.ttl) Investigating output/ttl/uniprot-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 10:37:40 +0900 +timestamp: 2024-06-04 16:05:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-hgnc.tsv (2024-03-31 15:19:08 +0900) -latest-prerequisite time: 2024-03-31 15:19:08 +0900 +--output/tsv/uniprot-hgnc.tsv (2024-06-03 15:27:42 +0900) +latest-prerequisite time: 2024-06-03 15:27:42 +0900 ................................ Rule for TTL (output/ttl/uniprot-insdc.ttl) @@ -8635,12 +8934,12 @@ Rule for TTL (output/ttl/uniprot-insdc.ttl) Investigating output/ttl/uniprot-insdc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 11:55:43 +0900 +timestamp: 2024-06-04 17:26:03 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-insdc.tsv (2024-03-31 16:08:12 +0900) -latest-prerequisite time: 2024-03-31 16:08:12 +0900 +--output/tsv/uniprot-insdc.tsv (2024-06-03 16:12:40 +0900) +latest-prerequisite time: 2024-06-03 16:12:40 +0900 ................................ Rule for TTL (output/ttl/uniprot-intact.ttl) @@ -8648,12 +8947,12 @@ Rule for TTL (output/ttl/uniprot-intact.ttl) Investigating output/ttl/uniprot-intact.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 11:55:51 +0900 +timestamp: 2024-06-04 17:26:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-intact.tsv (2024-03-31 16:09:18 +0900) -latest-prerequisite time: 2024-03-31 16:09:18 +0900 +--output/tsv/uniprot-intact.tsv (2024-06-03 16:13:41 +0900) +latest-prerequisite time: 2024-06-03 16:13:41 +0900 ................................ Rule for TTL (output/ttl/uniprot-ncbigene.ttl) @@ -8661,12 +8960,12 @@ Rule for TTL (output/ttl/uniprot-ncbigene.ttl) Investigating output/ttl/uniprot-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 11:57:29 +0900 +timestamp: 2024-06-04 17:27:49 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-ncbigene.tsv (2024-03-31 16:50:28 +0900) -latest-prerequisite time: 2024-03-31 16:50:28 +0900 +--output/tsv/uniprot-ncbigene.tsv (2024-06-03 16:51:31 +0900) +latest-prerequisite time: 2024-06-03 16:51:31 +0900 ................................ Rule for TTL (output/ttl/uniprot-oma_group.ttl) @@ -8674,12 +8973,12 @@ Rule for TTL (output/ttl/uniprot-oma_group.ttl) Investigating output/ttl/uniprot-oma_group.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 11:58:24 +0900 +timestamp: 2024-06-04 17:28:45 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-oma_group.tsv (2024-03-31 17:30:34 +0900) -latest-prerequisite time: 2024-03-31 17:30:34 +0900 +--output/tsv/uniprot-oma_group.tsv (2024-06-03 17:30:22 +0900) +latest-prerequisite time: 2024-06-03 17:30:22 +0900 ................................ Rule for TTL (output/ttl/uniprot-omim_gene.ttl) @@ -8687,12 +8986,12 @@ Rule for TTL (output/ttl/uniprot-omim_gene.ttl) Investigating output/ttl/uniprot-omim_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 11:58:25 +0900 +timestamp: 2024-06-04 17:28:46 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-omim_gene.tsv (2024-03-31 17:30:41 +0900) -latest-prerequisite time: 2024-03-31 17:30:41 +0900 +--output/tsv/uniprot-omim_gene.tsv (2024-06-03 17:30:28 +0900) +latest-prerequisite time: 2024-06-03 17:30:28 +0900 ................................ Rule for TTL (output/ttl/uniprot-omim_phenotype.ttl) @@ -8700,12 +8999,12 @@ Rule for TTL (output/ttl/uniprot-omim_phenotype.ttl) Investigating output/ttl/uniprot-omim_phenotype.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 11:58:25 +0900 +timestamp: 2024-06-04 17:28:46 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-omim_phenotype.tsv (2024-03-31 17:30:44 +0900) -latest-prerequisite time: 2024-03-31 17:30:44 +0900 +--output/tsv/uniprot-omim_phenotype.tsv (2024-06-03 17:30:31 +0900) +latest-prerequisite time: 2024-06-03 17:30:31 +0900 ................................ Rule for TTL (output/ttl/uniprot-orphanet_phenotype.ttl) @@ -8713,12 +9012,12 @@ Rule for TTL (output/ttl/uniprot-orphanet_phenotype.ttl) Investigating output/ttl/uniprot-orphanet_phenotype.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 11:58:25 +0900 +timestamp: 2024-06-04 17:28:46 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-orphanet_phenotype.tsv (2024-03-31 18:22:15 +0900) -latest-prerequisite time: 2024-03-31 18:22:15 +0900 +--output/tsv/uniprot-orphanet_phenotype.tsv (2024-06-03 18:15:59 +0900) +latest-prerequisite time: 2024-06-03 18:15:59 +0900 ................................ Rule for TTL (output/ttl/uniprot-pdb.ttl) @@ -8726,12 +9025,12 @@ Rule for TTL (output/ttl/uniprot-pdb.ttl) Investigating output/ttl/uniprot-pdb.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 11:58:28 +0900 +timestamp: 2024-06-04 17:28:49 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-pdb.tsv (2024-03-31 19:06:26 +0900) -latest-prerequisite time: 2024-03-31 19:06:26 +0900 +--output/tsv/uniprot-pdb.tsv (2024-06-03 18:54:08 +0900) +latest-prerequisite time: 2024-06-03 18:54:08 +0900 ................................ Rule for TTL (output/ttl/uniprot-reactome_pathway.ttl) @@ -8739,12 +9038,12 @@ Rule for TTL (output/ttl/uniprot-reactome_pathway.ttl) Investigating output/ttl/uniprot-reactome_pathway.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 11:58:31 +0900 +timestamp: 2024-06-04 17:28:52 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-reactome_pathway.tsv (2024-03-31 19:55:45 +0900) -latest-prerequisite time: 2024-03-31 19:55:45 +0900 +--output/tsv/uniprot-reactome_pathway.tsv (2024-06-03 19:39:41 +0900) +latest-prerequisite time: 2024-06-03 19:39:41 +0900 ................................ Rule for TTL (output/ttl/uniprot-refseq_protein.ttl) @@ -8752,12 +9051,12 @@ Rule for TTL (output/ttl/uniprot-refseq_protein.ttl) Investigating output/ttl/uniprot-refseq_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 12:07:30 +0900 +timestamp: 2024-06-04 17:36:06 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-refseq_protein.tsv (2024-03-31 20:42:47 +0900) -latest-prerequisite time: 2024-03-31 20:42:47 +0900 +--output/tsv/uniprot-refseq_protein.tsv (2024-06-03 20:18:58 +0900) +latest-prerequisite time: 2024-06-03 20:18:58 +0900 ................................ Rule for TTL (output/ttl/uniprot-uniprot_mnemonic.ttl) @@ -8765,12 +9064,12 @@ Rule for TTL (output/ttl/uniprot-uniprot_mnemonic.ttl) Investigating output/ttl/uniprot-uniprot_mnemonic.ttl class: Rake::FileTask task needed: true -timestamp: 2024-04-01 13:58:46 +0900 +timestamp: 2024-06-04 19:34:00 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot-uniprot_mnemonic.tsv (2024-03-31 21:41:21 +0900) -latest-prerequisite time: 2024-03-31 21:41:21 +0900 +--output/tsv/uniprot-uniprot_mnemonic.tsv (2024-06-03 21:12:48 +0900) +latest-prerequisite time: 2024-06-03 21:12:48 +0900 ................................ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_insdc.ttl) @@ -8778,12 +9077,12 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_insdc.ttl) Investigating output/ttl/uniprot_reference_proteome-assembly_insdc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-26 03:23:20 +0900 +timestamp: 2024-06-04 19:34:10 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot_reference_proteome-assembly_insdc.tsv (2024-05-25 17:09:49 +0900) -latest-prerequisite time: 2024-05-25 17:09:49 +0900 +--output/tsv/uniprot_reference_proteome-assembly_insdc.tsv (2024-06-03 21:12:49 +0900) +latest-prerequisite time: 2024-06-03 21:12:49 +0900 ................................ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_refseq.ttl) @@ -8791,12 +9090,12 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_refseq.ttl) Investigating output/ttl/uniprot_reference_proteome-assembly_refseq.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-26 03:23:20 +0900 +timestamp: 2024-06-04 19:34:11 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot_reference_proteome-assembly_refseq.tsv (2024-05-25 17:09:50 +0900) -latest-prerequisite time: 2024-05-25 17:09:50 +0900 +--output/tsv/uniprot_reference_proteome-assembly_refseq.tsv (2024-06-03 21:12:49 +0900) +latest-prerequisite time: 2024-06-03 21:12:49 +0900 ................................ Rule for TTL (output/ttl/uniprot_reference_proteome-taxonomy.ttl) @@ -8804,12 +9103,12 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-taxonomy.ttl) Investigating output/ttl/uniprot_reference_proteome-taxonomy.ttl class: Rake::FileTask task needed: true -timestamp: 2024-05-26 03:23:25 +0900 +timestamp: 2024-06-04 19:34:16 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-03-29 17:00:16 +0900) ---output/tsv/uniprot_reference_proteome-taxonomy.tsv (2024-05-25 17:09:50 +0900) -latest-prerequisite time: 2024-05-25 17:09:50 +0900 +--output/tsv/uniprot_reference_proteome-taxonomy.tsv (2024-06-03 21:12:50 +0900) +latest-prerequisite time: 2024-06-03 21:12:50 +0900 ................................ Rule for TTL (output/ttl/wikipathways-chebi.ttl) @@ -8840,155 +9139,158 @@ latest-prerequisite time: 2024-03-29 17:00:16 +0900 ### Update ID and Label TTL for atc if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/atc.ttl has no timestamp file -# File output/id-label/atc.ttl is created 7.345642891587998 days ago (will be updated when >5 days) +# File output/id-label/atc.ttl is created 9.674184418335068 days ago (will be updated when >5 days) ## Update output/id-label/atc.ttl -< 2024-05-26T03:23:27 atc +< 2024-06-04T19:34:17 atc togoid-rdfize-id-label atc -> 2024-05-26T03:23:28 atc +> 2024-06-04T19:34:18 atc ### Update ID and Label TTL for bioproject if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/bioproject.ttl is older than input/bioproject/download.lock ## Update output/id-label/bioproject.ttl -< 2024-05-26T03:23:28 bioproject +< 2024-06-04T19:34:18 bioproject togoid-rdfize-id-label bioproject -> 2024-05-26T03:23:33 bioproject +> 2024-06-04T19:34:24 bioproject ### Update ID and Label TTL for cellosaurus if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/cellosaurus.ttl is newer than input/cellosaurus/download.lock # => Preserving output/ttl/cellosaurus.ttl ### Update ID and Label TTL for ec if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/ec.ttl has no timestamp file -# File output/id-label/ec.ttl is created 7.345628236395463 days ago (will be updated when >5 days) +# File output/id-label/ec.ttl is created 9.674195308575879 days ago (will be updated when >5 days) ## Update output/id-label/ec.ttl -< 2024-05-26T03:23:33 ec +< 2024-06-04T19:34:24 ec togoid-rdfize-id-label ec -> 2024-05-26T03:23:34 ec +> 2024-06-04T19:34:24 ec ### Update ID and Label TTL for flybase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/flybase_gene.ttl has no timestamp file -# File output/id-label/flybase_gene.ttl is created 7.344793135151053 days ago (will be updated when >5 days) +# File output/id-label/flybase_gene.ttl is created 9.673345057025116 days ago (will be updated when >5 days) ## Update output/id-label/flybase_gene.ttl -< 2024-05-26T03:23:34 flybase_gene +< 2024-06-04T19:34:25 flybase_gene togoid-rdfize-id-label flybase_gene -> 2024-05-26T03:24:48 flybase_gene +> 2024-06-04T19:35:40 flybase_gene ### Update ID and Label TTL for hmdb if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/hmdb.ttl is newer than input/hmdb/download.lock # => Preserving output/ttl/hmdb.ttl ### Update ID and Label TTL for cog if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/cog.ttl is newer than input/cog/download.lock # => Preserving output/ttl/cog.ttl -### Update ID and Label TTL for interpro if check_id_label_filesize false or check_id_label_timestamp false -# File output/id-label/interpro.ttl is newer than input/interpro/download.lock -# => Preserving output/ttl/interpro.ttl +### Update ID and Label TTL for interpro if check_id_label_filesize false or check_id_label_timestamp true +# File output/id-label/interpro.ttl is older than input/interpro/download.lock +## Update output/id-label/interpro.ttl +< 2024-06-04T19:35:40 interpro +togoid-rdfize-id-label interpro +> 2024-06-04T19:35:41 interpro ### Update ID and Label TTL for mgi_allele if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_allele.ttl has no timestamp file -# File output/id-label/mgi_allele.ttl is created 7.345634989920011 days ago (will be updated when >5 days) +# File output/id-label/mgi_allele.ttl is created 9.67422049950096 days ago (will be updated when >5 days) ## Update output/id-label/mgi_allele.ttl -< 2024-05-26T03:24:48 mgi_allele +< 2024-06-04T19:35:41 mgi_allele togoid-rdfize-id-label mgi_allele -> 2024-05-26T03:24:49 mgi_allele +> 2024-06-04T19:35:43 mgi_allele ### Update ID and Label TTL for mgi_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_gene.ttl is older than input/mgi_gene/download.lock ## Update output/id-label/mgi_gene.ttl -< 2024-05-26T03:24:49 mgi_gene +< 2024-06-04T19:35:43 mgi_gene togoid-rdfize-id-label mgi_gene -> 2024-05-26T03:24:52 mgi_gene +> 2024-06-04T19:35:46 mgi_gene ### Update ID and Label TTL for mgi_genotype if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_genotype.ttl is older than input/mgi_genotype/download.lock ## Update output/id-label/mgi_genotype.ttl -< 2024-05-26T03:24:52 mgi_genotype +< 2024-06-04T19:35:46 mgi_genotype togoid-rdfize-id-label mgi_genotype -> 2024-05-26T03:24:53 mgi_genotype +> 2024-06-04T19:35:47 mgi_genotype ### Update ID and Label TTL for mirbase if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mirbase.ttl has no timestamp file -# File output/id-label/mirbase.ttl is created 7.344503352633727 days ago (will be updated when >5 days) +# File output/id-label/mirbase.ttl is created 9.673042575435082 days ago (will be updated when >5 days) ## Update output/id-label/mirbase.ttl -< 2024-05-26T03:24:53 mirbase +< 2024-06-04T19:35:47 mirbase togoid-rdfize-id-label mirbase -> 2024-05-26T03:26:36 mirbase +> 2024-06-04T19:37:30 mirbase ### Update ID and Label TTL for pathbank if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pathbank.ttl has no timestamp file -# File output/id-label/pathbank.ttl is created 7.345680761264247 days ago (will be updated when >5 days) +# File output/id-label/pathbank.ttl is created 9.674223352561864 days ago (will be updated when >5 days) ## Update output/id-label/pathbank.ttl -< 2024-05-26T03:26:36 pathbank +< 2024-06-04T19:37:30 pathbank togoid-rdfize-id-label pathbank -> 2024-05-26T03:26:37 pathbank +> 2024-06-04T19:37:31 pathbank ### Update ID and Label TTL for pfam if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pfam.ttl has no timestamp file -# File output/id-label/pfam.ttl is created 7.345653279550324 days ago (will be updated when >5 days) +# File output/id-label/pfam.ttl is created 9.674194067509768 days ago (will be updated when >5 days) ## Update output/id-label/pfam.ttl -< 2024-05-26T03:26:37 pfam +< 2024-06-04T19:37:31 pfam togoid-rdfize-id-label pfam -> 2024-05-26T03:26:41 pfam +> 2024-06-04T19:37:35 pfam ### Update ID and Label TTL for pubchem_pathway if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pubchem_pathway.ttl has no timestamp file -# File output/id-label/pubchem_pathway.ttl is created 7.345685875867036 days ago (will be updated when >5 days) +# File output/id-label/pubchem_pathway.ttl is created 9.674221465980729 days ago (will be updated when >5 days) ## Update output/id-label/pubchem_pathway.ttl -< 2024-05-26T03:26:41 pubchem_pathway +< 2024-06-04T19:37:35 pubchem_pathway togoid-rdfize-id-label pubchem_pathway -> 2024-05-26T03:26:42 pubchem_pathway +> 2024-06-04T19:37:36 pubchem_pathway ### Update ID and Label TTL for refseq_rna if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/refseq_rna.ttl is newer than input/refseq_rna/download.lock # => Preserving output/ttl/refseq_rna.ttl ### Update ID and Label TTL for rgd if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/rgd.ttl has no timestamp file -# File output/id-label/rgd.ttl is created 7.340929387915081 days ago (will be updated when >5 days) +# File output/id-label/rgd.ttl is created 9.673528953958124 days ago (will be updated when >5 days) ## Update output/id-label/rgd.ttl -< 2024-05-26T03:26:42 rgd +< 2024-06-04T19:37:36 rgd togoid-rdfize-id-label rgd -> 2024-05-26T03:27:43 rgd +> 2024-06-04T19:38:38 rgd ### Update ID and Label TTL for sgd if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/sgd.ttl has no timestamp file -# File output/id-label/sgd.ttl is created 7.340830312128854 days ago (will be updated when >5 days) +# File output/id-label/sgd.ttl is created 9.673424015702535 days ago (will be updated when >5 days) ## Update output/id-label/sgd.ttl -< 2024-05-26T03:27:43 sgd +< 2024-06-04T19:38:38 sgd togoid-rdfize-id-label sgd -> 2024-05-26T03:28:54 sgd +> 2024-06-04T19:39:50 sgd ### Update ID and Label TTL for swisslipids if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/swisslipids.ttl is older than input/swisslipids/download.lock ## Update output/id-label/swisslipids.ttl -< 2024-05-26T03:28:54 swisslipids +< 2024-06-04T19:39:50 swisslipids togoid-rdfize-id-label swisslipids -> 2024-05-26T03:28:59 swisslipids +> 2024-06-04T19:39:56 swisslipids ### Update ID and Label TTL for tair if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/tair.ttl has no timestamp file -# File output/id-label/tair.ttl is created 7.340847589323923 days ago (will be updated when >5 days) +# File output/id-label/tair.ttl is created 9.673433941420729 days ago (will be updated when >5 days) ## Update output/id-label/tair.ttl -< 2024-05-26T03:28:59 tair +< 2024-06-04T19:39:56 tair togoid-rdfize-id-label tair -> 2024-05-26T03:30:11 tair +> 2024-06-04T19:41:07 tair ### Update ID and Label TTL for uniprot_reference_proteome if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/uniprot_reference_proteome.ttl has no timestamp file -# File output/id-label/uniprot_reference_proteome.ttl is created 7.341642757847291 days ago (will be updated when >5 days) +# File output/id-label/uniprot_reference_proteome.ttl is created 9.674222686893414 days ago (will be updated when >5 days) ## Update output/id-label/uniprot_reference_proteome.ttl -< 2024-05-26T03:30:11 uniprot_reference_proteome +< 2024-06-04T19:41:07 uniprot_reference_proteome togoid-rdfize-id-label uniprot_reference_proteome -> 2024-05-26T03:30:15 uniprot_reference_proteome +> 2024-06-04T19:41:11 uniprot_reference_proteome ### Update ID and Label TTL for vgnc if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/vgnc.ttl has no timestamp file -# File output/id-label/vgnc.ttl is created 7.340875314824873 days ago (will be updated when >5 days) +# File output/id-label/vgnc.ttl is created 9.673444107042847 days ago (will be updated when >5 days) ## Update output/id-label/vgnc.ttl -< 2024-05-26T03:30:15 vgnc +< 2024-06-04T19:41:11 vgnc togoid-rdfize-id-label vgnc -> 2024-05-26T03:31:26 vgnc +> 2024-06-04T19:42:23 vgnc ### Update ID and Label TTL for wormbase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/wormbase_gene.ttl has no timestamp file -# File output/id-label/wormbase_gene.ttl is created 7.3409035517468055 days ago (will be updated when >5 days) +# File output/id-label/wormbase_gene.ttl is created 9.673460136923033 days ago (will be updated when >5 days) ## Update output/id-label/wormbase_gene.ttl -< 2024-05-26T03:31:26 wormbase_gene +< 2024-06-04T19:42:23 wormbase_gene togoid-rdfize-id-label wormbase_gene -> 2024-05-26T03:32:36 wormbase_gene +> 2024-06-04T19:43:34 wormbase_gene ### Update ID and Label TTL for xenbase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/xenbase_gene.ttl has no timestamp file -# File output/id-label/xenbase_gene.ttl is created 7.3409232083648845 days ago (will be updated when >5 days) +# File output/id-label/xenbase_gene.ttl is created 9.673450697557673 days ago (will be updated when >5 days) ## Update output/id-label/xenbase_gene.ttl -< 2024-05-26T03:32:37 xenbase_gene +< 2024-06-04T19:43:34 xenbase_gene togoid-rdfize-id-label xenbase_gene -> 2024-05-26T03:33:48 xenbase_gene +> 2024-06-04T19:44:47 xenbase_gene ### Update ID and Label TTL for zfin_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/zfin_gene.ttl has no timestamp file -# File output/id-label/zfin_gene.ttl is created 7.340935975625139 days ago (will be updated when >5 days) +# File output/id-label/zfin_gene.ttl is created 9.673470013363692 days ago (will be updated when >5 days) ## Update output/id-label/zfin_gene.ttl -< 2024-05-26T03:33:48 zfin_gene +< 2024-06-04T19:44:47 zfin_gene togoid-rdfize-id-label zfin_gene -> 2024-05-26T03:34:59 zfin_gene +> 2024-06-04T19:45:58 zfin_gene Rule for ID and Label TTL (output/id-label/hmdb.ttl) ------------------------------ Investigating output/id-label/hmdb.ttl @@ -9014,4 +9316,4 @@ latest-prerequisite time: 2024-03-29 17:00:16 +0900 ................................ -*** Finished: 2024-05-26T03:34:59 *** +*** Finished: 2024-06-04T19:45:58 ***