From e2871cca6f6f6dce8ff250a9864e401f4f982e60 Mon Sep 17 00:00:00 2001 From: Toshiaki Katayama Date: Sat, 19 Oct 2024 11:35:47 +0900 Subject: [PATCH 1/5] Updated logs --- log/error.log | 8 +- log/pair_count.tsv | 92 +- log/pair_count_history.tsv | 1 + log/update.log | 6205 +++++++++++++++++++----------------- 4 files changed, 3327 insertions(+), 2979 deletions(-) diff --git a/log/error.log b/log/error.log index ff176cca..1993b736 100644 --- a/log/error.log +++ b/log/error.log @@ -1,11 +1,9 @@ Error: download_file(input/glytoucan, https://glycosmos.org/download/glycosmos_ggdbs_pubmed.csv): Command failed with status (8): [wget --quiet --recursive --no-parent --no-...] -Error: check_remote_file_time(input/hgnc/hgnc_complete_set.tsv, https://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/tsv/hgnc_complete_set.tsv): no time information in "" -Error: Remote file is empty Error: check_remote_file_time(input/homologene/homologene.data, https://ftp.ncbi.nlm.nih.gov/pub/HomoloGene/current/homologene.data): no time information in "" Error: Remote file is empty # Error: output/tsv/chembl_target-ensembl_gene.tsv new file size per old 0 / 61845 = 0.0 < 0.5 # Error: Failed to create output/tsv/chembl_target-ensembl_gene.tsv or created file was empty -Error: HTTP Error 502: Bad Gateway: https://api.alpha.glycosmos.org/partialmatch?wurcs=WURCS%3D2.0%2F4%2C11%2C10%2F%5Ba2122h-1b_1-5%5D%5Ba2112h-1b_1-5%5D%5Ba2122h-1b_1-5_2%2ANCC%2F3%3DO%5D%5Ba1221m-1a_1-5%5D%2F1-2-3-2-3-2-3-4-2-3-2%2Fa4-b1_b3-c1_c4-d1_d3-e1_e4-f1_f3-g1_g3-h1_g4-i1_i3-j1_j4-k1&rootnode=true G64227KZ +Error: HTTP Error 502: Bad Gateway: https://api.alpha.glycosmos.org/partialmatch?wurcs=WURCS%3D2.0%2F4%2C10%2C9%2F%5Ba2122h-1b_1-5%5D%5Ba2112h-1b_1-5%5D%5BAad21122h-2a_2-6_5%2ANCC%2F3%3DO%5D%5Ba2112h-1b_1-5_2%2ANCC%2F3%3DO%5D%2F1-2-3-3-3-4-2-3-3-3%2Fa4-b1_b3-c2_b4-f1_c8-d2_d8-e2_f3-g1_f6-j2_g3-h2_h8-i2&rootnode=true G14091MR # Error: output/tsv/glycomotif-glytoucan.tsv new file size per old 0 / 2804382 = 0.0 < 0.5 # Error: Failed to create output/tsv/glycomotif-glytoucan.tsv or created file was empty # Error: output/tsv/glytoucan-doid.tsv new file size per old 1538 / 4376 = 0.35146252285191953 < 0.5 @@ -73,5 +71,5 @@ Error: HTTP Error 502: Bad Gateway: https://api.alpha.glycosmos.org/partialmatch # Error: Failed to create output/tsv/mondo-omim_phenotype.tsv or created file was empty # Error: output/tsv/mondo-orphanet_phenotype.tsv new file size per old 0 / 146923 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-orphanet_phenotype.tsv or created file was empty -# Error: output/tsv/wikipathways-chebi.tsv new file size per old 72255 / 148433 = 0.48678528359596585 < 0.5 -# Error: output/tsv/wikipathways-uniprot.tsv new file size per old 59610 / 470542 = 0.12668369667319815 < 0.5 +# Error: output/tsv/wikipathways-chebi.tsv new file size per old 73351 / 148433 = 0.49416908638914525 < 0.5 +# Error: output/tsv/wikipathways-uniprot.tsv new file size per old 59666 / 470542 = 0.12680270836609697 < 0.5 diff --git a/log/pair_count.tsv b/log/pair_count.tsv index 7e6d29b3..e5d9d4b7 100644 --- a/log/pair_count.tsv +++ b/log/pair_count.tsv @@ -3,11 +3,11 @@ assembly_insdc-bioproject.tsv 2283159 assembly_insdc-biosample.tsv 2225812 assembly_insdc-insdc_master.tsv 2150193 bioproject-biosample.tsv 2546485 -bioproject-geo_series.tsv 217809 -bioproject-pubmed.tsv 279413 +bioproject-geo_series.tsv 218318 +bioproject-pubmed.tsv 280110 bioproject_umbrella-bioproject.tsv 104586 -biosample-bioproject.tsv 19988521 -biosample-geo_sample.tsv 9447146 +biosample-bioproject.tsv 20027457 +biosample-geo_sample.tsv 9463924 cellosaurus-ncit_disease.tsv 75821 cellosaurus-orphanet_phenotype.tsv 41448 chebi-glytoucan.tsv 10615 @@ -34,27 +34,27 @@ chembl_target-uniprot-TIO_000002.tsv 9094 chembl_target-uniprot-TIO_000130.tsv 1533 chembl_target-uniprot-TIO_000132.tsv 1434 chembl_target-uniprot.tsv 9094 -clinvar-dbsnp.tsv 2937791 -clinvar-hgnc.tsv 3044255 -clinvar-medgen.tsv 4171173 -clinvar-mondo.tsv 1988452 -clinvar-ncbigene.tsv 3044575 -clinvar-omim_phenotype.tsv 1635664 -clinvar-orphanet_phenotype.tsv 1860371 +clinvar-dbsnp.tsv 2937807 +clinvar-hgnc.tsv 3048112 +clinvar-medgen.tsv 4176542 +clinvar-mondo.tsv 1989799 +clinvar-ncbigene.tsv 3048432 +clinvar-omim_phenotype.tsv 1636833 +clinvar-orphanet_phenotype.tsv 1861412 clinvar-uniprot.tsv 20798 cog-insdc.tsv 115826 cog-refseq_protein.tsv 3340026 doid-mesh.tsv 4019 doid-ncit_disease.tsv 4849 doid-omim_phenotype.tsv 5671 -ensembl_gene-affy_probeset.tsv 54855 +ensembl_gene-affy_probeset.tsv 55423 ensembl_gene-ensembl_protein.tsv 12969337 ensembl_gene-ensembl_transcript.tsv 15910019 ensembl_gene-hgnc.tsv 47792 ensembl_gene-ncbigene.tsv 14749031 ensembl_gene-uniprot.tsv 5546630 ensembl_protein-ensembl_transcript.tsv 12969340 -ensembl_transcript-affy_probeset.tsv 224377 +ensembl_transcript-affy_probeset.tsv 241195 ensembl_transcript-go.tsv 55211171 ensembl_transcript-hgnc.tsv 241612 ensembl_transcript-refseq_rna.tsv 40165483 @@ -119,7 +119,7 @@ medgen-omim_phenotype.tsv 11043 medgen-orphanet_phenotype.tsv 9063 mgi_gene-ensembl_gene.tsv 56426 mgi_gene-hgnc.tsv 24587 -mgi_gene-mgi_allele.tsv 110437 +mgi_gene-mgi_allele.tsv 110465 mgi_gene-ncbigene.tsv 90618 mgi_gene-uniprot.tsv 79034 mgi_genotype-doid.tsv 7837 @@ -136,18 +136,18 @@ ncbigene-ensembl_gene.tsv 11654277 ncbigene-ensembl_protein.tsv 13449374 ncbigene-ensembl_transcript.tsv 14177749 ncbigene-flybase_gene.tsv 25078 -ncbigene-go.tsv 101041913 -ncbigene-hgnc.tsv 43827 -ncbigene-mgi_gene.tsv 71684 +ncbigene-go.tsv 101431326 +ncbigene-hgnc.tsv 43828 +ncbigene-mgi_gene.tsv 71683 ncbigene-mirbase.tsv 17541 -ncbigene-omim_gene.tsv 18527 -ncbigene-refseq_genomic.tsv 211762 -ncbigene-refseq_protein.tsv 68217911 -ncbigene-refseq_rna.tsv 66619410 +ncbigene-omim_gene.tsv 18530 +ncbigene-refseq_genomic.tsv 211763 +ncbigene-refseq_protein.tsv 68719760 +ncbigene-refseq_rna.tsv 66732541 ncbigene-rgd.tsv 47288 ncbigene-sgd.tsv 6471 ncbigene-tair.tsv 32835 -ncbigene-taxonomy.tsv 56353463 +ncbigene-taxonomy.tsv 56873692 ncbigene-vgnc.tsv 112162 ncbigene-wormbase_gene.tsv 28779 ncbigene-xenbase_gene.tsv 46842 @@ -170,14 +170,14 @@ pdb-interpro.tsv 726658 pdb-pdb_ccd.tsv 530587 pdb-pfam.tsv 339565 pdb-uniprot.tsv 341431 -pmc-pubmed.tsv 9561234 +pmc-pubmed.tsv 9575886 prosite-prosite_prorule.tsv 1455 pubchem_compound-atc.tsv 4965 pubchem_compound-chebi.tsv 174843 pubchem_compound-chembl_compound.tsv 2372556 pubchem_compound-drugbank.tsv 10789 pubchem_compound-glytoucan.tsv 69203 -pubchem_compound-inchi_key.tsv 118680448 +pubchem_compound-inchi_key.tsv 118727283 pubchem_pathway-ncbigene.tsv 33861 pubchem_pathway-pathbank.tsv 69387 pubchem_pathway-pubchem_compound.tsv 1253395 @@ -195,7 +195,7 @@ reactome_reaction-go.tsv 3318 reactome_reaction-iuphar_ligand.tsv 14709 reactome_reaction-mirbase.tsv 194 reactome_reaction-uniprot.tsv 679876 -refseq_protein-uniprot.tsv 154618594 +refseq_protein-uniprot.tsv 154618423 refseq_rna-dbsnp.tsv 267059416 refseq_rna-hgnc.tsv 227230 refseq_rna-ncbigene.tsv 65546825 @@ -209,28 +209,28 @@ rhea-go.tsv 4435 rhea-pubmed.tsv 142680 rhea-reactome_reaction.tsv 1511 rhea-uniprot.tsv 41448659 -sra_accession-bioproject.tsv 529462 -sra_accession-biosample.tsv 31680248 +sra_accession-bioproject.tsv 529783 +sra_accession-biosample.tsv 31699855 sra_accession-sra_analysis.tsv 329243 -sra_accession-sra_experiment.tsv 35570093 -sra_accession-sra_project.tsv 616586 -sra_accession-sra_run.tsv 40350221 -sra_accession-sra_sample.tsv 34372201 -sra_experiment-bioproject.tsv 31035975 -sra_experiment-biosample.tsv 31352287 -sra_experiment-sra_project.tsv 31380496 -sra_experiment-sra_sample.tsv 31380303 -sra_project-bioproject.tsv 532904 -sra_run-bioproject.tsv 32903026 -sra_run-biosample.tsv 33216964 -sra_run-sra_experiment.tsv 33268661 -sra_run-sra_project.tsv 33260321 -sra_run-sra_sample.tsv 33246345 -sra_sample-biosample.tsv 31701362 +sra_accession-sra_experiment.tsv 35659853 +sra_accession-sra_project.tsv 617870 +sra_accession-sra_run.tsv 40455586 +sra_accession-sra_sample.tsv 34436063 +sra_experiment-bioproject.tsv 31083409 +sra_experiment-biosample.tsv 31394401 +sra_experiment-sra_project.tsv 31427930 +sra_experiment-sra_sample.tsv 31427737 +sra_project-bioproject.tsv 533225 +sra_run-bioproject.tsv 32951299 +sra_run-biosample.tsv 33259254 +sra_run-sra_experiment.tsv 33317034 +sra_run-sra_project.tsv 33308594 +sra_run-sra_sample.tsv 33294197 +sra_sample-biosample.tsv 31720969 swisslipids-chebi.tsv 4276 swisslipids-hmdb.tsv 26026 swisslipids-inchi_key.tsv 593209 -taxonomy-pubmed.tsv 50493 +taxonomy-pubmed.tsv 50481 togovar-clinvar.tsv 745335 togovar-dbsnp.tsv 66877211 togovar-ensembl_gene.tsv 72473309 @@ -266,8 +266,8 @@ uniprot-taxonomy.tsv 248838887 uniprot-uniprot_mnemonic.tsv 248838887 wikipathways-chebi.tsv 11471 wikipathways-doid.tsv 1148 -wikipathways-hmdb.tsv 4119 +wikipathways-hmdb.tsv 4125 wikipathways-lipidmaps.tsv 1398 -wikipathways-ncbigene.tsv 30258 +wikipathways-ncbigene.tsv 30268 wikipathways-uniprot.tsv 33518 -total 5181681751 +total 5184078291 diff --git a/log/pair_count_history.tsv b/log/pair_count_history.tsv index f92023d0..1e8a8586 100644 --- a/log/pair_count_history.tsv +++ b/log/pair_count_history.tsv @@ -60,3 +60,4 @@ Date affy_probeset-ncbigene assembly_insdc-bioproject assembly_insdc-biosample a 2024-09-28 19063 2283159 2225812 2150193 2546485 216801 278016 104586 19849642 9409388 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 2937727 3025517 4145651 1986712 3025834 1635593 1859264 20797 115826 3340026 4019 4849 5671 54855 12969337 15910019 47792 14749031 5546630 12969340 224377 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2049 41234 43873 21166 1325 24071 1912 43815 17277 34911 13531 28774 18940 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30288 1615604 21171 1283 113855 473753 1274 759739513 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56430 24587 110329 90619 79034 7836 124600 400728 10712 574 1486 8352 9693 10380 2390 11640889 13437484 14165019 25078 100805649 43830 71684 17541 18530 211759 67906210 66278052 47288 6471 32835 56097873 112162 28779 46840 27162 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9522934 1453 4965 174843 2372556 10789 69203 118657562 33861 69387 1253395 2877 623594 1267 268044 13144 40633 348 393545 868078 201371 3318 14387 194 672687 168636138 267059416 227230 65546825 190869 6191600 56922967 65576846 206037 7598 4447 138072 1480 41203851 528400 31608624 329141 35358694 613078 40139217 34193817 30937045 31262333 31281566 31281373 531842 32784770 33125990 33149472 33142065 33145755 31629738 4276 26026 593209 50502 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10144 65716 39722925 9498084 9712712 9712712 604164314 81986 260978721 230595 12687882 7653121 16188 7077 8227 384047 281259 45015597 245896766 245896766 588007 190 656198 11471 1148 4119 1398 30258 33518 5240093853 2024-10-08 19063 2283159 2225812 2150193 2546485 217446 278826 104586 19938580 9431518 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937745 3025875 4162525 1986846 3026191 1634429 1859346 20797 115826 3340026 4019 4849 5671 54855 12969337 15910019 47792 14749031 5546630 12969340 224377 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2049 41234 43873 21166 1325 24071 1912 43815 17277 34911 13531 28774 18940 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56428 24587 110373 90619 79034 7837 124602 400771 10712 574 1486 8352 9693 10380 2390 11660930 13459019 14189546 25078 101043576 43829 71684 17541 18526 211759 68060620 66432148 47288 6471 32835 56251350 112162 28779 46842 27163 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9547208 1455 4965 174843 2372556 10789 69203 118680448 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 168636384 267059416 227230 65546825 190869 6191600 56922967 65576846 216654 7719 4435 142680 1511 41448659 529030 31645689 329141 35486202 615018 40263951 34290431 30997361 31319829 31341882 31341689 532472 32860319 33183885 33225215 33217614 33206609 31666803 4276 26026 593209 50523 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 11471 1148 4119 1398 30258 33518 5194479012 2024-10-12 19063 2283159 2225812 2150193 2546485 217809 279413 104586 19988521 9447146 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937791 3044255 4171173 1988452 3044575 1635664 1860371 20798 115826 3340026 4019 4849 5671 54855 12969337 15910019 47792 14749031 5546630 12969340 224377 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2049 41234 43873 21166 1325 24071 1912 43815 17277 34911 13531 28774 18940 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24587 110437 90618 79034 7837 124623 400910 10712 574 1486 8352 9693 10380 2390 11654277 13449374 14177749 25078 101041913 43827 71684 17541 18527 211762 68217911 66619410 47288 6471 32835 56353463 112162 28779 46842 27163 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9561234 1455 4965 174843 2372556 10789 69203 118680448 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154618594 267059416 227230 65546825 190869 6191600 56922967 65576846 216654 7719 4435 142680 1511 41448659 529462 31680248 329243 35570093 616586 40350221 34372201 31035975 31352287 31380496 31380303 532904 32903026 33216964 33268661 33260321 33246345 31701362 4276 26026 593209 50493 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 11471 1148 4119 1398 30258 33518 5181681751 +2024-10-19 19063 2283159 2225812 2150193 2546485 218318 280110 104586 20027457 9463924 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937807 3048112 4176542 1989799 3048432 1636833 1861412 20798 115826 3340026 4019 4849 5671 55423 12969337 15910019 47792 14749031 5546630 12969340 241195 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2049 41234 43873 21166 1325 24071 1912 43815 17277 34911 13531 28774 18940 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24587 110465 90618 79034 7837 124623 400910 10712 574 1486 8352 9693 10380 2390 11654277 13449374 14177749 25078 101431326 43828 71683 17541 18530 211763 68719760 66732541 47288 6471 32835 56873692 112162 28779 46842 27163 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9575886 1455 4965 174843 2372556 10789 69203 118727283 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154618423 267059416 227230 65546825 190869 6191600 56922967 65576846 216654 7719 4435 142680 1511 41448659 529783 31699855 329243 35659853 617870 40455586 34436063 31083409 31394401 31427930 31427737 533225 32951299 33259254 33317034 33308594 33294197 31720969 4276 26026 593209 50481 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 11471 1148 4125 1398 30268 33518 5184078291 diff --git a/log/update.log b/log/update.log index 75463668..4038cb62 100644 --- a/log/update.log +++ b/log/update.log @@ -1,16 +1,16 @@ -*** Started: 2024-10-11T17:00:18 *** +*** Started: 2024-10-18T17:00:14 *** ## Prepare input files for BioProject # Checking lock file input/bioproject/download.lock for download -# Local file time: 2024-10-03 18:58:48 +0900 (input/bioproject/bioproject.xml) -# Remote file time: 2024-10-10 09:17:58 +0000 (https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml) +# Local file time: 2024-10-10 18:17:58 +0900 (input/bioproject/bioproject.xml) +# Remote file time: 2024-10-17 09:12:35 +0000 (https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/bioproject https://ftp.ncbi.nlm.nih.gov/bioproject/bioproject.xml python bin/bioproject_xml2tsv.py input/bioproject/bioproject.xml > input/bioproject/bioproject.tsv # Overwriting timestamp of the input/bioproject/download.lock ## Prepare input files for BioSample # Checking lock file input/biosample/download.lock for download -# Local file time: 2024-10-03 22:18:12 +0900 (input/biosample/biosample_set.xml.gz) -# Remote file time: 2024-10-10 13:22:21 +0000 (https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz) +# Local file time: 2024-10-10 22:22:21 +0900 (input/biosample/biosample_set.xml.gz) +# Remote file time: 2024-10-16 13:26:30 +0000 (https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/biosample https://ftp.ncbi.nlm.nih.gov/biosample/biosample_set.xml.gz gzip -dc input/biosample/biosample_set.xml.gz > input/biosample/biosample_set.xml python bin/biosample_xml2tsv.py input/biosample/biosample_set.xml > input/biosample/biosample_set.tsv @@ -24,14 +24,14 @@ python bin/biosample_xml2tsv.py input/biosample/biosample_set.xml > input/biosam # Preserving timestamp of the input/cellosaurus/download.lock ## Prepare input files for ClinVar # Checking lock file input/clinvar/download.lock for download -# Local file time: 2024-10-02 00:26:58 +0900 (input/clinvar/variant_summary.txt.gz) -# Remote file time: 2024-10-10 04:16:17 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz) +# Local file time: 2024-10-10 13:16:17 +0900 (input/clinvar/variant_summary.txt.gz) +# Remote file time: 2024-10-15 10:16:04 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/clinvar https://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz gzip -dc input/clinvar/variant_summary.txt.gz > input/clinvar/variant_summary.txt # Overwriting timestamp of the input/clinvar/download.lock ## Prepare input files for Ensembl # Checking lock file input/ensembl/download.lock for download -# File input/ensembl/taxonomy.txt is created 6.995008941636747 days ago (will be updated when >5 days) +# File input/ensembl/taxonomy.txt is created 7.002186946860451 days ago (will be updated when >5 days) sparql_csv2tsv.sh input/ensembl/taxonomy.rq https://rdfportal.org/ebi/sparql > input/ensembl/taxonomy.txt # Overwriting timestamp of the input/ensembl/download.lock ## Prepare input files for GlyTouCan @@ -49,11 +49,10 @@ sparql_csv2tsv.sh bin/sparql/glycogene-uniprot.rq https://ts.glycosmos.org/sparq # Preserving timestamp of the input/hmdb/download.lock ## Prepare input files for HGNC # Checking lock file input/hgnc/download.lock for download -Error: check_remote_file_time(input/hgnc/hgnc_complete_set.tsv, https://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/tsv/hgnc_complete_set.tsv): no time information in "" -# Local file size: 16391617 (input/hgnc/hgnc_complete_set.tsv) -# Remote file size: 0 (https://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/tsv/hgnc_complete_set.tsv) -Error: Remote file is empty -# Preserving timestamp of the input/hgnc/download.lock +# Local file time: 2024-08-23 22:51:49 +0900 (input/hgnc/hgnc_complete_set.tsv) +# Remote file time: 2024-10-15 15:54:20 +0000 (https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt) +wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/hgnc https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt +# Overwriting timestamp of the input/hgnc/download.lock ## Prepare input files for Homologene # Checking lock file input/homologene/download.lock for download Error: check_remote_file_time(input/homologene/homologene.data, https://ftp.ncbi.nlm.nih.gov/pub/HomoloGene/current/homologene.data): no time information in "" @@ -101,49 +100,49 @@ bin/sparql_csv2tsv.sh bin/sparql/hp_category.rq https://rdfportal.org/bioportal/ # Preserving timestamp of the input/interpro/download.lock ## Prepare input files for MGI_GENE # Checking lock file input/mgi_gene/download.lock for download -# Local file time: 2024-09-30 21:01:45 +0900 (input/mgi_gene/MRK_List2.rpt) -# Remote file time: 2024-10-07 12:04:47 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt) +# Local file time: 2024-10-07 21:04:47 +0900 (input/mgi_gene/MRK_List2.rpt) +# Remote file time: 2024-10-14 12:02:19 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MRK_List2.rpt -# Local file time: 2024-09-30 21:00:50 +0900 (input/mgi_gene/MGI_Gene_Model_Coord.rpt) -# Remote file time: 2024-10-07 12:02:34 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt) +# Local file time: 2024-10-07 21:02:34 +0900 (input/mgi_gene/MGI_Gene_Model_Coord.rpt) +# Remote file time: 2024-10-14 12:01:06 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MGI_Gene_Model_Coord.rpt -# Local file time: 2024-09-30 21:01:52 +0900 (input/mgi_gene/MRK_SwissProt_TrEMBL.rpt) -# Remote file time: 2024-10-07 12:05:03 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt) +# Local file time: 2024-10-07 21:05:03 +0900 (input/mgi_gene/MRK_SwissProt_TrEMBL.rpt) +# Remote file time: 2024-10-14 12:02:26 +0000 (https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MRK_SwissProt_TrEMBL.rpt -# Local file time: 2024-09-30 21:00:27 +0900 (input/mgi_gene/HGNC_AllianceHomology.rpt) -# Remote file time: 2024-10-07 12:01:19 +0000 (https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt) +# Local file time: 2024-10-07 21:01:19 +0900 (input/mgi_gene/HGNC_AllianceHomology.rpt) +# Remote file time: 2024-10-14 12:00:40 +0000 (https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/HGNC_AllianceHomology.rpt -# Local file time: 2024-09-30 21:01:24 +0900 (input/mgi_gene/MGI_PhenotypicAllele.rpt) -# Remote file time: 2024-10-07 12:04:00 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt) +# Local file time: 2024-10-07 21:04:00 +0900 (input/mgi_gene/MGI_PhenotypicAllele.rpt) +# Remote file time: 2024-10-14 12:01:57 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_gene https://www.informatics.jax.org/downloads/reports/MGI_PhenotypicAllele.rpt # Overwriting timestamp of the input/mgi_gene/download.lock ## Prepare input files for MGI_GENOTYPE # Checking lock file input/mgi_genotype/download.lock for download -# Local file time: 2024-09-30 21:00:44 +0900 (input/mgi_genotype/MGI_DiseaseGeneModel.rpt) -# Remote file time: 2024-10-07 12:02:11 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt) +# Local file time: 2024-10-07 21:02:11 +0900 (input/mgi_genotype/MGI_DiseaseGeneModel.rpt) +# Remote file time: 2024-10-14 12:00:59 +0000 (https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/mgi_genotype https://www.informatics.jax.org/downloads/reports/MGI_DiseaseGeneModel.rpt ruby bin/query_mousemine.rb > input/mgi_genotype/mousemine_genotype.tsv # Overwriting timestamp of the input/mgi_genotype/download.lock ## Prepare input files for NCBI Gene # Checking lock file input/ncbigene/download.lock for download -# Local file time: 2024-10-04 10:58:00 +0900 (input/ncbigene/gene2refseq.gz) -# Remote file time: 2024-10-11 03:22:50 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz) +# Local file time: 2024-10-11 12:22:50 +0900 (input/ncbigene/gene2refseq.gz) +# Remote file time: 2024-10-18 02:43:22 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz gzip -dc input/ncbigene/gene2refseq.gz > input/ncbigene/gene2refseq -# Local file time: 2024-10-04 10:53:23 +0900 (input/ncbigene/gene2ensembl.gz) -# Remote file time: 2024-10-11 03:18:15 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz) +# Local file time: 2024-10-11 12:18:15 +0900 (input/ncbigene/gene2ensembl.gz) +# Remote file time: 2024-10-18 02:38:38 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz gzip -dc input/ncbigene/gene2ensembl.gz > input/ncbigene/gene2ensembl -# Local file time: 2024-10-04 10:55:05 +0900 (input/ncbigene/gene2go.gz) -# Remote file time: 2024-10-11 03:19:54 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz) +# Local file time: 2024-10-11 12:19:54 +0900 (input/ncbigene/gene2go.gz) +# Remote file time: 2024-10-18 02:40:28 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2go.gz gzip -dc input/ncbigene/gene2go.gz > input/ncbigene/gene2go -# Local file time: 2024-10-04 11:04:46 +0900 (input/ncbigene/Homo_sapiens.gene_info.gz) -# Remote file time: 2024-10-11 03:29:43 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz) +# Local file time: 2024-10-11 12:29:43 +0900 (input/ncbigene/Homo_sapiens.gene_info.gz) +# Remote file time: 2024-10-18 02:50:35 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz gzip -dc input/ncbigene/Homo_sapiens.gene_info.gz > input/ncbigene/Homo_sapiens.gene_info -# Local file time: 2024-10-04 10:59:49 +0900 (input/ncbigene/gene_info.gz) -# Remote file time: 2024-10-11 03:24:45 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz) +# Local file time: 2024-10-11 12:24:45 +0900 (input/ncbigene/gene_info.gz) +# Remote file time: 2024-10-18 02:45:19 +0000 (https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/ncbigene https://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz gzip -dc input/ncbigene/gene_info.gz > input/ncbigene/gene_info # Overwriting timestamp of the input/ncbigene/download.lock @@ -164,8 +163,8 @@ gzip -dc input/ncbigene/gene_info.gz > input/ncbigene/gene_info # Preserving timestamp of the input/oma_protein/download.lock ## Prepare input files for PMC # Checking lock file input/pmc/download.lock for download -# Local file time: 2024-10-04 18:22:20 +0900 (input/pmc/PMC-ids.csv.gz) -# Remote file time: 2024-10-11 09:14:29 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz) +# Local file time: 2024-10-11 18:14:29 +0900 (input/pmc/PMC-ids.csv.gz) +# Remote file time: 2024-10-18 09:41:21 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/pmc https://ftp.ncbi.nlm.nih.gov/pub/pmc/PMC-ids.csv.gz gzip -dc input/pmc/PMC-ids.csv.gz > input/pmc/PMC-ids.csv # Overwriting timestamp of the input/pmc/download.lock @@ -233,8 +232,8 @@ gzip -dc input/pmc/PMC-ids.csv.gz > input/pmc/PMC-ids.csv # Preserving timestamp of the input/reactome/download.lock ## Prepare input files for RefSeq Protein # Checking lock file input/refseq_protein/download.lock for download -# Local file time: 2024-10-03 18:24:46 +0900 (input/refseq_protein/gene_refseq_uniprotkb_collab.gz) -# Remote file time: 2024-10-10 09:23:10 +0000 (https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz) +# Local file time: 2024-10-10 18:23:10 +0900 (input/refseq_protein/gene_refseq_uniprotkb_collab.gz) +# Remote file time: 2024-10-17 09:22:58 +0000 (https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/refseq_protein https://ftp.ncbi.nlm.nih.gov/refseq/uniprotkb/gene_refseq_uniprotkb_collab.gz # Overwriting timestamp of the input/refseq_protein/download.lock ## Prepare input files for RefSeq RNA @@ -261,8 +260,8 @@ wget --quiet --recursive --no-parent --no-directories --timestamping --no-check- # Preserving timestamp of the input/rhea/download.lock ## Prepare input files for SRA # Checking lock file input/sra/download.lock for download -# Local file time: 2024-10-05 00:27:57 +0900 (input/sra/SRA_Accessions.tab) -# Remote file time: 2024-10-10 15:45:13 +0000 (https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab) +# Local file time: 2024-10-12 00:52:48 +0900 (input/sra/SRA_Accessions.tab) +# Remote file time: 2024-10-17 18:52:52 +0000 (https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/sra https://ftp.ncbi.nlm.nih.gov/sra/reports/Metadata/SRA_Accessions.tab # Overwriting timestamp of the input/sra/download.lock ## Prepare input files for SwissLipids @@ -286,214 +285,214 @@ wget --quiet --no-check-certificate -O input/uniprot/uniprot_reference_proteome. # Preserving timestamp of the input/uniprot/download.lock ## Prepare input files for Taxonomy # Checking lock file input/taxonomy/download.lock for download -# Local file time: 2024-10-06 19:29:30 +0900 (input/taxonomy/taxdump.tar.gz) -# Remote file time: 2024-10-11 10:29:08 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz) +# Local file time: 2024-10-11 19:29:08 +0900 (input/taxonomy/taxdump.tar.gz) +# Remote file time: 2024-10-18 10:28:22 +0000 (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz) wget --quiet --recursive --no-parent --no-directories --timestamping --no-check-certificate --directory-prefix input/taxonomy https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz mkdir -p input/taxonomy/taxdump && tar xzf input/taxonomy/taxdump.tar.gz -C input/taxonomy/taxdump/ # Overwriting timestamp of the input/taxonomy/download.lock ### Update TSV for affy_probeset-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/affy_probeset-ncbigene.tsv is newer than config/affy_probeset-ncbigene/config.yaml # File output/tsv/affy_probeset-ncbigene.tsv has no timestamp file -# File output/tsv/affy_probeset-ncbigene.tsv is created 5.0264156033801735 days ago (will be updated when >5 days) +# File output/tsv/affy_probeset-ncbigene.tsv is created 7.0037154692549075 days ago (will be updated when >5 days) ## Update config/affy_probeset-ncbigene/config.yaml => output/tsv/affy_probeset-ncbigene.tsv -< 2024-10-11T20:11:01 affy_probeset-ncbigene +< 2024-10-18T20:16:23 affy_probeset-ncbigene togoid-config config/affy_probeset-ncbigene update # Success: output/tsv/affy_probeset-ncbigene.tsv is updated -> 2024-10-11T20:11:02 affy_probeset-ncbigene +> 2024-10-18T20:16:24 affy_probeset-ncbigene Rule for TSV (output/tsv/affy_probeset-ncbigene.tsv) ------------------------------ Investigating output/tsv/affy_probeset-ncbigene.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:11:02 +0900 +timestamp: 2024-10-18 20:16:24 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for assembly_insdc-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-bioproject.tsv is newer than config/assembly_insdc-bioproject/config.yaml # File output/tsv/assembly_insdc-bioproject.tsv has no timestamp file -# File output/tsv/assembly_insdc-bioproject.tsv is created 5.026397480026053 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-bioproject.tsv is created 7.003699165777813 days ago (will be updated when >5 days) ## Update config/assembly_insdc-bioproject/config.yaml => output/tsv/assembly_insdc-bioproject.tsv -< 2024-10-11T20:11:02 assembly_insdc-bioproject +< 2024-10-18T20:16:24 assembly_insdc-bioproject togoid-config config/assembly_insdc-bioproject update # Success: output/tsv/assembly_insdc-bioproject.tsv is updated -> 2024-10-11T20:11:04 assembly_insdc-bioproject +> 2024-10-18T20:16:26 assembly_insdc-bioproject Rule for TSV (output/tsv/assembly_insdc-bioproject.tsv) ------------------------------ Investigating output/tsv/assembly_insdc-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:11:04 +0900 +timestamp: 2024-10-18 20:16:26 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for assembly_insdc-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-biosample.tsv is newer than config/assembly_insdc-biosample/config.yaml # File output/tsv/assembly_insdc-biosample.tsv has no timestamp file -# File output/tsv/assembly_insdc-biosample.tsv is created 5.026394733577546 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-biosample.tsv is created 7.00369982419397 days ago (will be updated when >5 days) ## Update config/assembly_insdc-biosample/config.yaml => output/tsv/assembly_insdc-biosample.tsv -< 2024-10-11T20:11:04 assembly_insdc-biosample +< 2024-10-18T20:16:26 assembly_insdc-biosample togoid-config config/assembly_insdc-biosample update # Success: output/tsv/assembly_insdc-biosample.tsv is updated -> 2024-10-11T20:11:07 assembly_insdc-biosample +> 2024-10-18T20:16:29 assembly_insdc-biosample Rule for TSV (output/tsv/assembly_insdc-biosample.tsv) ------------------------------ Investigating output/tsv/assembly_insdc-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:11:07 +0900 +timestamp: 2024-10-18 20:16:29 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for assembly_insdc-insdc_master if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/assembly_insdc-insdc_master.tsv is newer than config/assembly_insdc-insdc_master/config.yaml # File output/tsv/assembly_insdc-insdc_master.tsv has no timestamp file -# File output/tsv/assembly_insdc-insdc_master.tsv is created 5.026386383715845 days ago (will be updated when >5 days) +# File output/tsv/assembly_insdc-insdc_master.tsv is created 7.003700025572165 days ago (will be updated when >5 days) ## Update config/assembly_insdc-insdc_master/config.yaml => output/tsv/assembly_insdc-insdc_master.tsv -< 2024-10-11T20:11:07 assembly_insdc-insdc_master +< 2024-10-18T20:16:29 assembly_insdc-insdc_master togoid-config config/assembly_insdc-insdc_master update # Success: output/tsv/assembly_insdc-insdc_master.tsv is updated -> 2024-10-11T20:11:09 assembly_insdc-insdc_master +> 2024-10-18T20:16:31 assembly_insdc-insdc_master Rule for TSV (output/tsv/assembly_insdc-insdc_master.tsv) ------------------------------ Investigating output/tsv/assembly_insdc-insdc_master.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:11:09 +0900 +timestamp: 2024-10-18 20:16:31 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for bioproject-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-biosample.tsv is newer than config/bioproject-biosample/config.yaml # File output/tsv/bioproject-biosample.tsv is older than input/bioproject/download.lock ## Update config/bioproject-biosample/config.yaml => output/tsv/bioproject-biosample.tsv -< 2024-10-11T20:11:09 bioproject-biosample +< 2024-10-18T20:16:31 bioproject-biosample togoid-config config/bioproject-biosample update # Success: output/tsv/bioproject-biosample.tsv is updated -> 2024-10-11T20:11:12 bioproject-biosample +> 2024-10-18T20:16:34 bioproject-biosample Rule for TSV (output/tsv/bioproject-biosample.tsv) ------------------------------ Investigating output/tsv/bioproject-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:11:12 +0900 +timestamp: 2024-10-18 20:16:34 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-10-11 20:11:12 +0900) -latest-prerequisite time: 2024-10-11 20:11:12 +0900 +--prepare:bioproject (2024-10-18 20:16:34 +0900) +latest-prerequisite time: 2024-10-18 20:16:34 +0900 ................................ ### Update TSV for bioproject-geo_series if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-geo_series.tsv is newer than config/bioproject-geo_series/config.yaml # File output/tsv/bioproject-geo_series.tsv is older than input/bioproject/download.lock ## Update config/bioproject-geo_series/config.yaml => output/tsv/bioproject-geo_series.tsv -< 2024-10-11T20:11:12 bioproject-geo_series +< 2024-10-18T20:16:34 bioproject-geo_series togoid-config config/bioproject-geo_series update # Success: output/tsv/bioproject-geo_series.tsv is updated -> 2024-10-11T20:11:13 bioproject-geo_series +> 2024-10-18T20:16:36 bioproject-geo_series Rule for TSV (output/tsv/bioproject-geo_series.tsv) ------------------------------ Investigating output/tsv/bioproject-geo_series.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:11:13 +0900 +timestamp: 2024-10-18 20:16:36 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-10-11 20:11:13 +0900) -latest-prerequisite time: 2024-10-11 20:11:13 +0900 +--prepare:bioproject (2024-10-18 20:16:36 +0900) +latest-prerequisite time: 2024-10-18 20:16:36 +0900 ................................ ### Update TSV for bioproject-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject-pubmed.tsv is newer than config/bioproject-pubmed/config.yaml # File output/tsv/bioproject-pubmed.tsv is older than input/bioproject/download.lock ## Update config/bioproject-pubmed/config.yaml => output/tsv/bioproject-pubmed.tsv -< 2024-10-11T20:11:13 bioproject-pubmed +< 2024-10-18T20:16:36 bioproject-pubmed togoid-config config/bioproject-pubmed update # Success: output/tsv/bioproject-pubmed.tsv is updated -> 2024-10-11T20:11:15 bioproject-pubmed +> 2024-10-18T20:16:38 bioproject-pubmed Rule for TSV (output/tsv/bioproject-pubmed.tsv) ------------------------------ Investigating output/tsv/bioproject-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:11:15 +0900 +timestamp: 2024-10-18 20:16:38 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-10-11 20:11:15 +0900) -latest-prerequisite time: 2024-10-11 20:11:15 +0900 +--prepare:bioproject (2024-10-18 20:16:38 +0900) +latest-prerequisite time: 2024-10-18 20:16:38 +0900 ................................ ### Update TSV for bioproject_umbrella-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/bioproject_umbrella-bioproject.tsv is newer than config/bioproject_umbrella-bioproject/config.yaml # File output/tsv/bioproject_umbrella-bioproject.tsv has no timestamp file -# File output/tsv/bioproject_umbrella-bioproject.tsv is created 5.026406108537523 days ago (will be updated when >5 days) +# File output/tsv/bioproject_umbrella-bioproject.tsv is created 7.003729378794769 days ago (will be updated when >5 days) ## Update config/bioproject_umbrella-bioproject/config.yaml => output/tsv/bioproject_umbrella-bioproject.tsv -< 2024-10-11T20:11:15 bioproject_umbrella-bioproject +< 2024-10-18T20:16:38 bioproject_umbrella-bioproject togoid-config config/bioproject_umbrella-bioproject update # Success: output/tsv/bioproject_umbrella-bioproject.tsv is updated -> 2024-10-11T20:11:15 bioproject_umbrella-bioproject +> 2024-10-18T20:16:38 bioproject_umbrella-bioproject Rule for TSV (output/tsv/bioproject_umbrella-bioproject.tsv) ------------------------------ Investigating output/tsv/bioproject_umbrella-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:11:15 +0900 +timestamp: 2024-10-18 20:16:38 +0900 pre-requisites: --output/tsv/ () ---prepare:bioproject (2024-10-11 20:11:15 +0900) -latest-prerequisite time: 2024-10-11 20:11:15 +0900 +--prepare:bioproject (2024-10-18 20:16:38 +0900) +latest-prerequisite time: 2024-10-18 20:16:38 +0900 ................................ ### Update TSV for biosample-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/biosample-bioproject.tsv is newer than config/biosample-bioproject/config.yaml # File output/tsv/biosample-bioproject.tsv is older than input/biosample/download.lock ## Update config/biosample-bioproject/config.yaml => output/tsv/biosample-bioproject.tsv -< 2024-10-11T20:11:15 biosample-bioproject +< 2024-10-18T20:16:38 biosample-bioproject togoid-config config/biosample-bioproject update # Success: output/tsv/biosample-bioproject.tsv is updated -> 2024-10-11T20:13:10 biosample-bioproject +> 2024-10-18T20:18:45 biosample-bioproject Rule for TSV (output/tsv/biosample-bioproject.tsv) ------------------------------ Investigating output/tsv/biosample-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:13:10 +0900 +timestamp: 2024-10-18 20:18:45 +0900 pre-requisites: --output/tsv/ () ---prepare:biosample (2024-10-11 20:13:10 +0900) -latest-prerequisite time: 2024-10-11 20:13:10 +0900 +--prepare:biosample (2024-10-18 20:18:45 +0900) +latest-prerequisite time: 2024-10-18 20:18:45 +0900 ................................ ### Update TSV for biosample-geo_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/biosample-geo_sample.tsv is newer than config/biosample-geo_sample/config.yaml # File output/tsv/biosample-geo_sample.tsv is older than input/biosample/download.lock ## Update config/biosample-geo_sample/config.yaml => output/tsv/biosample-geo_sample.tsv -< 2024-10-11T20:13:10 biosample-geo_sample +< 2024-10-18T20:18:45 biosample-geo_sample togoid-config config/biosample-geo_sample update # Success: output/tsv/biosample-geo_sample.tsv is updated -> 2024-10-11T20:14:45 biosample-geo_sample +> 2024-10-18T20:20:17 biosample-geo_sample Rule for TSV (output/tsv/biosample-geo_sample.tsv) ------------------------------ Investigating output/tsv/biosample-geo_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:14:45 +0900 +timestamp: 2024-10-18 20:20:17 +0900 pre-requisites: --output/tsv/ () ---prepare:biosample (2024-10-11 20:14:45 +0900) -latest-prerequisite time: 2024-10-11 20:14:45 +0900 +--prepare:biosample (2024-10-18 20:20:17 +0900) +latest-prerequisite time: 2024-10-18 20:20:17 +0900 ................................ ### Update TSV for cellosaurus-ncit_disease if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -508,8 +507,8 @@ task needed: true timestamp: 2024-09-13 20:46:20 +0900 pre-requisites: --output/tsv/ () ---prepare:cellosaurus (2024-10-11 20:14:45 +0900) -latest-prerequisite time: 2024-10-11 20:14:45 +0900 +--prepare:cellosaurus (2024-10-18 20:20:17 +0900) +latest-prerequisite time: 2024-10-18 20:20:17 +0900 ................................ ### Update TSV for cellosaurus-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -524,271 +523,271 @@ task needed: true timestamp: 2024-09-13 20:46:24 +0900 pre-requisites: --output/tsv/ () ---prepare:cellosaurus (2024-10-11 20:14:45 +0900) -latest-prerequisite time: 2024-10-11 20:14:45 +0900 +--prepare:cellosaurus (2024-10-18 20:20:17 +0900) +latest-prerequisite time: 2024-10-18 20:20:17 +0900 ................................ ### Update TSV for chebi-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chebi-glytoucan.tsv is newer than config/chebi-glytoucan/config.yaml # File output/tsv/chebi-glytoucan.tsv has no timestamp file -# File output/tsv/chebi-glytoucan.tsv is created 5.02687678710897 days ago (will be updated when >5 days) +# File output/tsv/chebi-glytoucan.tsv is created 7.00383882965706 days ago (will be updated when >5 days) ## Update config/chebi-glytoucan/config.yaml => output/tsv/chebi-glytoucan.tsv -< 2024-10-11T20:14:45 chebi-glytoucan +< 2024-10-18T20:20:17 chebi-glytoucan togoid-config config/chebi-glytoucan update # Success: output/tsv/chebi-glytoucan.tsv is updated -> 2024-10-11T20:14:45 chebi-glytoucan +> 2024-10-18T20:20:17 chebi-glytoucan Rule for TSV (output/tsv/chebi-glytoucan.tsv) ------------------------------ Investigating output/tsv/chebi-glytoucan.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:14:45 +0900 +timestamp: 2024-10-18 20:20:17 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chebi-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chebi-inchi_key.tsv is newer than config/chebi-inchi_key/config.yaml # File output/tsv/chebi-inchi_key.tsv has no timestamp file -# File output/tsv/chebi-inchi_key.tsv is created 5.026874223409607 days ago (will be updated when >5 days) +# File output/tsv/chebi-inchi_key.tsv is created 7.003835932904514 days ago (will be updated when >5 days) ## Update config/chebi-inchi_key/config.yaml => output/tsv/chebi-inchi_key.tsv -< 2024-10-11T20:14:45 chebi-inchi_key +< 2024-10-18T20:20:17 chebi-inchi_key togoid-config config/chebi-inchi_key update # Success: output/tsv/chebi-inchi_key.tsv is updated -> 2024-10-11T20:14:46 chebi-inchi_key +> 2024-10-18T20:20:18 chebi-inchi_key Rule for TSV (output/tsv/chebi-inchi_key.tsv) ------------------------------ Investigating output/tsv/chebi-inchi_key.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:14:46 +0900 +timestamp: 2024-10-18 20:20:18 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_compound-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-chebi.tsv is newer than config/chembl_compound-chebi/config.yaml # File output/tsv/chembl_compound-chebi.tsv has no timestamp file -# File output/tsv/chembl_compound-chebi.tsv is created 5.026878331027234 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-chebi.tsv is created 7.003839127250614 days ago (will be updated when >5 days) ## Update config/chembl_compound-chebi/config.yaml => output/tsv/chembl_compound-chebi.tsv -< 2024-10-11T20:14:46 chembl_compound-chebi +< 2024-10-18T20:20:18 chembl_compound-chebi togoid-config config/chembl_compound-chebi update # Success: output/tsv/chembl_compound-chebi.tsv is updated -> 2024-10-11T20:14:46 chembl_compound-chebi +> 2024-10-18T20:20:19 chembl_compound-chebi Rule for TSV (output/tsv/chembl_compound-chebi.tsv) ------------------------------ Investigating output/tsv/chembl_compound-chebi.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:14:46 +0900 +timestamp: 2024-10-18 20:20:19 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_compound-chembl_target if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-chembl_target.tsv is newer than config/chembl_compound-chembl_target/config.yaml # File output/tsv/chembl_compound-chembl_target.tsv has no timestamp file -# File output/tsv/chembl_compound-chembl_target.tsv is created 5.015931942127743 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-chembl_target.tsv is created 6.992807600626249 days ago (will be updated when >5 days) ## Update config/chembl_compound-chembl_target/config.yaml => output/tsv/chembl_compound-chembl_target.tsv -< 2024-10-11T20:14:46 chembl_compound-chembl_target +< 2024-10-18T20:20:19 chembl_compound-chembl_target togoid-config config/chembl_compound-chembl_target update # Success: output/tsv/chembl_compound-chembl_target.tsv is updated -> 2024-10-11T20:30:40 chembl_compound-chembl_target +> 2024-10-18T20:36:12 chembl_compound-chembl_target Rule for TSV (output/tsv/chembl_compound-chembl_target.tsv) ------------------------------ Investigating output/tsv/chembl_compound-chembl_target.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:40 +0900 +timestamp: 2024-10-18 20:36:12 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_compound-drugbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-drugbank.tsv is newer than config/chembl_compound-drugbank/config.yaml # File output/tsv/chembl_compound-drugbank.tsv has no timestamp file -# File output/tsv/chembl_compound-drugbank.tsv is created 5.026963021000231 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-drugbank.tsv is created 7.00383342266367 days ago (will be updated when >5 days) ## Update config/chembl_compound-drugbank/config.yaml => output/tsv/chembl_compound-drugbank.tsv -< 2024-10-11T20:30:40 chembl_compound-drugbank +< 2024-10-18T20:36:12 chembl_compound-drugbank togoid-config config/chembl_compound-drugbank update # Success: output/tsv/chembl_compound-drugbank.tsv is updated -> 2024-10-11T20:30:40 chembl_compound-drugbank +> 2024-10-18T20:36:12 chembl_compound-drugbank Rule for TSV (output/tsv/chembl_compound-drugbank.tsv) ------------------------------ Investigating output/tsv/chembl_compound-drugbank.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:40 +0900 +timestamp: 2024-10-18 20:36:12 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_compound-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-hmdb.tsv is newer than config/chembl_compound-hmdb/config.yaml # File output/tsv/chembl_compound-hmdb.tsv has no timestamp file -# File output/tsv/chembl_compound-hmdb.tsv is created 5.026963146418079 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-hmdb.tsv is created 7.003833143307766 days ago (will be updated when >5 days) ## Update config/chembl_compound-hmdb/config.yaml => output/tsv/chembl_compound-hmdb.tsv -< 2024-10-11T20:30:41 chembl_compound-hmdb +< 2024-10-18T20:36:12 chembl_compound-hmdb togoid-config config/chembl_compound-hmdb update # Success: output/tsv/chembl_compound-hmdb.tsv is updated -> 2024-10-11T20:30:41 chembl_compound-hmdb +> 2024-10-18T20:36:13 chembl_compound-hmdb Rule for TSV (output/tsv/chembl_compound-hmdb.tsv) ------------------------------ Investigating output/tsv/chembl_compound-hmdb.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:41 +0900 +timestamp: 2024-10-18 20:36:13 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_compound-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-inchi_key.tsv is newer than config/chembl_compound-inchi_key/config.yaml # File output/tsv/chembl_compound-inchi_key.tsv has no timestamp file -# File output/tsv/chembl_compound-inchi_key.tsv is created 5.026916888014225 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-inchi_key.tsv is created 7.003786706536956 days ago (will be updated when >5 days) ## Update config/chembl_compound-inchi_key/config.yaml => output/tsv/chembl_compound-inchi_key.tsv -< 2024-10-11T20:30:41 chembl_compound-inchi_key +< 2024-10-18T20:36:13 chembl_compound-inchi_key togoid-config config/chembl_compound-inchi_key update # Success: output/tsv/chembl_compound-inchi_key.tsv is updated -> 2024-10-11T20:30:45 chembl_compound-inchi_key +> 2024-10-18T20:36:17 chembl_compound-inchi_key Rule for TSV (output/tsv/chembl_compound-inchi_key.tsv) ------------------------------ Investigating output/tsv/chembl_compound-inchi_key.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:45 +0900 +timestamp: 2024-10-18 20:36:17 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_compound-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-mesh.tsv is newer than config/chembl_compound-mesh/config.yaml # File output/tsv/chembl_compound-mesh.tsv has no timestamp file -# File output/tsv/chembl_compound-mesh.tsv is created 5.0269625519496755 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-mesh.tsv is created 7.003831864312164 days ago (will be updated when >5 days) ## Update config/chembl_compound-mesh/config.yaml => output/tsv/chembl_compound-mesh.tsv -< 2024-10-11T20:30:45 chembl_compound-mesh +< 2024-10-18T20:36:17 chembl_compound-mesh togoid-config config/chembl_compound-mesh update # Success: output/tsv/chembl_compound-mesh.tsv is updated -> 2024-10-11T20:30:46 chembl_compound-mesh +> 2024-10-18T20:36:17 chembl_compound-mesh Rule for TSV (output/tsv/chembl_compound-mesh.tsv) ------------------------------ Investigating output/tsv/chembl_compound-mesh.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:46 +0900 +timestamp: 2024-10-18 20:36:17 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_compound-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pdb_ccd.tsv is newer than config/chembl_compound-pdb_ccd/config.yaml # File output/tsv/chembl_compound-pdb_ccd.tsv has no timestamp file -# File output/tsv/chembl_compound-pdb_ccd.tsv is created 5.026964028326864 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pdb_ccd.tsv is created 7.0038328949195945 days ago (will be updated when >5 days) ## Update config/chembl_compound-pdb_ccd/config.yaml => output/tsv/chembl_compound-pdb_ccd.tsv -< 2024-10-11T20:30:46 chembl_compound-pdb_ccd +< 2024-10-18T20:36:17 chembl_compound-pdb_ccd togoid-config config/chembl_compound-pdb_ccd update # Success: output/tsv/chembl_compound-pdb_ccd.tsv is updated -> 2024-10-11T20:30:46 chembl_compound-pdb_ccd +> 2024-10-18T20:36:18 chembl_compound-pdb_ccd Rule for TSV (output/tsv/chembl_compound-pdb_ccd.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pdb_ccd.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:46 +0900 +timestamp: 2024-10-18 20:36:18 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_compound-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubchem_compound.tsv is newer than config/chembl_compound-pubchem_compound/config.yaml # File output/tsv/chembl_compound-pubchem_compound.tsv has no timestamp file -# File output/tsv/chembl_compound-pubchem_compound.tsv is created 5.0269242051909835 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubchem_compound.tsv is created 7.003788058907466 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubchem_compound/config.yaml => output/tsv/chembl_compound-pubchem_compound.tsv -< 2024-10-11T20:30:46 chembl_compound-pubchem_compound +< 2024-10-18T20:36:18 chembl_compound-pubchem_compound togoid-config config/chembl_compound-pubchem_compound update # Success: output/tsv/chembl_compound-pubchem_compound.tsv is updated -> 2024-10-11T20:30:51 chembl_compound-pubchem_compound +> 2024-10-18T20:36:22 chembl_compound-pubchem_compound Rule for TSV (output/tsv/chembl_compound-pubchem_compound.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pubchem_compound.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:51 +0900 +timestamp: 2024-10-18 20:36:22 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_compound-pubchem_substance if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubchem_substance.tsv is newer than config/chembl_compound-pubchem_substance/config.yaml # File output/tsv/chembl_compound-pubchem_substance.tsv has no timestamp file -# File output/tsv/chembl_compound-pubchem_substance.tsv is created 5.026957652087384 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubchem_substance.tsv is created 7.003822428882824 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubchem_substance/config.yaml => output/tsv/chembl_compound-pubchem_substance.tsv -< 2024-10-11T20:30:51 chembl_compound-pubchem_substance +< 2024-10-18T20:36:22 chembl_compound-pubchem_substance togoid-config config/chembl_compound-pubchem_substance update # Success: output/tsv/chembl_compound-pubchem_substance.tsv is updated -> 2024-10-11T20:30:52 chembl_compound-pubchem_substance +> 2024-10-18T20:36:23 chembl_compound-pubchem_substance Rule for TSV (output/tsv/chembl_compound-pubchem_substance.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pubchem_substance.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:52 +0900 +timestamp: 2024-10-18 20:36:23 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_compound-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_compound-pubmed.tsv is newer than config/chembl_compound-pubmed/config.yaml # File output/tsv/chembl_compound-pubmed.tsv has no timestamp file -# File output/tsv/chembl_compound-pubmed.tsv is created 5.0269371075639695 days ago (will be updated when >5 days) +# File output/tsv/chembl_compound-pubmed.tsv is created 7.003803367241377 days ago (will be updated when >5 days) ## Update config/chembl_compound-pubmed/config.yaml => output/tsv/chembl_compound-pubmed.tsv -< 2024-10-11T20:30:52 chembl_compound-pubmed +< 2024-10-18T20:36:23 chembl_compound-pubmed togoid-config config/chembl_compound-pubmed update # Success: output/tsv/chembl_compound-pubmed.tsv is updated -> 2024-10-11T20:30:55 chembl_compound-pubmed +> 2024-10-18T20:36:26 chembl_compound-pubmed Rule for TSV (output/tsv/chembl_compound-pubmed.tsv) ------------------------------ Investigating output/tsv/chembl_compound-pubmed.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:55 +0900 +timestamp: 2024-10-18 20:36:26 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_target-ensembl_gene if check_tsv_filesize false or check_config_timestamp true or check_tsv_timestamp true # File output/tsv/chembl_target-ensembl_gene.tsv is older than config/chembl_target-ensembl_gene/config.yaml ## Update config/chembl_target-ensembl_gene/config.yaml => output/tsv/chembl_target-ensembl_gene.tsv -< 2024-10-11T20:30:55 chembl_target-ensembl_gene +< 2024-10-18T20:36:26 chembl_target-ensembl_gene togoid-config config/chembl_target-ensembl_gene update # Error: output/tsv/chembl_target-ensembl_gene.tsv new file size per old 0 / 61845 = 0.0 < 0.5 # Error: Failed to create output/tsv/chembl_target-ensembl_gene.tsv or created file was empty # Failure: output/tsv/chembl_target-ensembl_gene.tsv is not updated -> 2024-10-11T20:30:55 chembl_target-ensembl_gene +> 2024-10-18T20:36:26 chembl_target-ensembl_gene Rule for TSV (output/tsv/chembl_target-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/chembl_target-ensembl_gene.tsv @@ -797,294 +796,294 @@ task needed: true timestamp: 2023-08-25 17:59:01 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_target-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-go.tsv is newer than config/chembl_target-go/config.yaml # File output/tsv/chembl_target-go.tsv has no timestamp file -# File output/tsv/chembl_target-go.tsv is created 5.026966254051331 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-go.tsv is created 7.003829697519201 days ago (will be updated when >5 days) ## Update config/chembl_target-go/config.yaml => output/tsv/chembl_target-go.tsv -< 2024-10-11T20:30:55 chembl_target-go +< 2024-10-18T20:36:26 chembl_target-go togoid-config config/chembl_target-go update # Success: output/tsv/chembl_target-go.tsv is updated -> 2024-10-11T20:30:55 chembl_target-go +> 2024-10-18T20:36:27 chembl_target-go Rule for TSV (output/tsv/chembl_target-go.tsv) ------------------------------ Investigating output/tsv/chembl_target-go.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:55 +0900 +timestamp: 2024-10-18 20:36:27 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_target-interpro if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-interpro.tsv is newer than config/chembl_target-interpro/config.yaml # File output/tsv/chembl_target-interpro.tsv has no timestamp file -# File output/tsv/chembl_target-interpro.tsv is created 5.026966491511088 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-interpro.tsv is created 7.00382933762183 days ago (will be updated when >5 days) ## Update config/chembl_target-interpro/config.yaml => output/tsv/chembl_target-interpro.tsv -< 2024-10-11T20:30:55 chembl_target-interpro +< 2024-10-18T20:36:27 chembl_target-interpro togoid-config config/chembl_target-interpro update # Success: output/tsv/chembl_target-interpro.tsv is updated -> 2024-10-11T20:30:56 chembl_target-interpro +> 2024-10-18T20:36:27 chembl_target-interpro Rule for TSV (output/tsv/chembl_target-interpro.tsv) ------------------------------ Investigating output/tsv/chembl_target-interpro.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:56 +0900 +timestamp: 2024-10-18 20:36:27 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_target-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-pdb.tsv is newer than config/chembl_target-pdb/config.yaml # File output/tsv/chembl_target-pdb.tsv has no timestamp file -# File output/tsv/chembl_target-pdb.tsv is created 5.0269661228019675 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-pdb.tsv is created 7.003828584838171 days ago (will be updated when >5 days) ## Update config/chembl_target-pdb/config.yaml => output/tsv/chembl_target-pdb.tsv -< 2024-10-11T20:30:56 chembl_target-pdb +< 2024-10-18T20:36:27 chembl_target-pdb togoid-config config/chembl_target-pdb update # Success: output/tsv/chembl_target-pdb.tsv is updated -> 2024-10-11T20:30:56 chembl_target-pdb +> 2024-10-18T20:36:28 chembl_target-pdb Rule for TSV (output/tsv/chembl_target-pdb.tsv) ------------------------------ Investigating output/tsv/chembl_target-pdb.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:56 +0900 +timestamp: 2024-10-18 20:36:28 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_target-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-pfam.tsv is newer than config/chembl_target-pfam/config.yaml # File output/tsv/chembl_target-pfam.tsv has no timestamp file -# File output/tsv/chembl_target-pfam.tsv is created 5.026967262394977 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-pfam.tsv is created 7.003823446038091 days ago (will be updated when >5 days) ## Update config/chembl_target-pfam/config.yaml => output/tsv/chembl_target-pfam.tsv -< 2024-10-11T20:30:56 chembl_target-pfam +< 2024-10-18T20:36:28 chembl_target-pfam togoid-config config/chembl_target-pfam update # Success: output/tsv/chembl_target-pfam.tsv is updated -> 2024-10-11T20:30:57 chembl_target-pfam +> 2024-10-18T20:36:28 chembl_target-pfam Rule for TSV (output/tsv/chembl_target-pfam.tsv) ------------------------------ Investigating output/tsv/chembl_target-pfam.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:57 +0900 +timestamp: 2024-10-18 20:36:28 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_target-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-reactome_pathway.tsv is newer than config/chembl_target-reactome_pathway/config.yaml # File output/tsv/chembl_target-reactome_pathway.tsv has no timestamp file -# File output/tsv/chembl_target-reactome_pathway.tsv is created 5.026973190290139 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-reactome_pathway.tsv is created 7.0038234136396875 days ago (will be updated when >5 days) ## Update config/chembl_target-reactome_pathway/config.yaml => output/tsv/chembl_target-reactome_pathway.tsv -< 2024-10-11T20:30:57 chembl_target-reactome_pathway +< 2024-10-18T20:36:28 chembl_target-reactome_pathway togoid-config config/chembl_target-reactome_pathway update # Success: output/tsv/chembl_target-reactome_pathway.tsv is updated -> 2024-10-11T20:30:58 chembl_target-reactome_pathway +> 2024-10-18T20:36:28 chembl_target-reactome_pathway Rule for TSV (output/tsv/chembl_target-reactome_pathway.tsv) ------------------------------ Investigating output/tsv/chembl_target-reactome_pathway.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:58 +0900 +timestamp: 2024-10-18 20:36:28 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for chembl_target-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/chembl_target-uniprot.tsv is newer than config/chembl_target-uniprot/config.yaml # File output/tsv/chembl_target-uniprot.tsv has no timestamp file -# File output/tsv/chembl_target-uniprot.tsv is created 5.026973122953033 days ago (will be updated when >5 days) +# File output/tsv/chembl_target-uniprot.tsv is created 7.003822923705984 days ago (will be updated when >5 days) ## Update config/chembl_target-uniprot/config.yaml => output/tsv/chembl_target-uniprot.tsv -< 2024-10-11T20:30:58 chembl_target-uniprot +< 2024-10-18T20:36:28 chembl_target-uniprot togoid-config config/chembl_target-uniprot update # Success: output/tsv/chembl_target-uniprot.tsv is updated -> 2024-10-11T20:30:58 chembl_target-uniprot +> 2024-10-18T20:36:29 chembl_target-uniprot Rule for TSV (output/tsv/chembl_target-uniprot.tsv) ------------------------------ Investigating output/tsv/chembl_target-uniprot.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:30:58 +0900 +timestamp: 2024-10-18 20:36:29 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for clinvar-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-dbsnp.tsv is newer than config/clinvar-dbsnp/config.yaml # File output/tsv/clinvar-dbsnp.tsv is older than input/clinvar/download.lock ## Update config/clinvar-dbsnp/config.yaml => output/tsv/clinvar-dbsnp.tsv -< 2024-10-11T20:30:58 clinvar-dbsnp +< 2024-10-18T20:36:29 clinvar-dbsnp togoid-config config/clinvar-dbsnp update # Success: output/tsv/clinvar-dbsnp.tsv is updated -> 2024-10-11T20:31:39 clinvar-dbsnp +> 2024-10-18T20:37:08 clinvar-dbsnp Rule for TSV (output/tsv/clinvar-dbsnp.tsv) ------------------------------ Investigating output/tsv/clinvar-dbsnp.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:31:39 +0900 +timestamp: 2024-10-18 20:37:08 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-10-11 20:31:39 +0900) -latest-prerequisite time: 2024-10-11 20:31:39 +0900 +--prepare:clinvar (2024-10-18 20:37:08 +0900) +latest-prerequisite time: 2024-10-18 20:37:08 +0900 ................................ ### Update TSV for clinvar-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-hgnc.tsv is newer than config/clinvar-hgnc/config.yaml # File output/tsv/clinvar-hgnc.tsv is older than input/clinvar/download.lock ## Update config/clinvar-hgnc/config.yaml => output/tsv/clinvar-hgnc.tsv -< 2024-10-11T20:31:39 clinvar-hgnc +< 2024-10-18T20:37:08 clinvar-hgnc togoid-config config/clinvar-hgnc update # Success: output/tsv/clinvar-hgnc.tsv is updated -> 2024-10-11T20:32:31 clinvar-hgnc +> 2024-10-18T20:38:02 clinvar-hgnc Rule for TSV (output/tsv/clinvar-hgnc.tsv) ------------------------------ Investigating output/tsv/clinvar-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:32:31 +0900 +timestamp: 2024-10-18 20:38:02 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-10-11 20:32:31 +0900) -latest-prerequisite time: 2024-10-11 20:32:31 +0900 +--prepare:clinvar (2024-10-18 20:38:02 +0900) +latest-prerequisite time: 2024-10-18 20:38:02 +0900 ................................ ### Update TSV for clinvar-medgen if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-medgen.tsv is newer than config/clinvar-medgen/config.yaml # File output/tsv/clinvar-medgen.tsv is older than input/clinvar/download.lock ## Update config/clinvar-medgen/config.yaml => output/tsv/clinvar-medgen.tsv -< 2024-10-11T20:32:31 clinvar-medgen +< 2024-10-18T20:38:02 clinvar-medgen togoid-config config/clinvar-medgen update # Success: output/tsv/clinvar-medgen.tsv is updated -> 2024-10-11T20:34:06 clinvar-medgen +> 2024-10-18T20:39:36 clinvar-medgen Rule for TSV (output/tsv/clinvar-medgen.tsv) ------------------------------ Investigating output/tsv/clinvar-medgen.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:34:06 +0900 +timestamp: 2024-10-18 20:39:36 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-10-11 20:34:06 +0900) -latest-prerequisite time: 2024-10-11 20:34:06 +0900 +--prepare:clinvar (2024-10-18 20:39:36 +0900) +latest-prerequisite time: 2024-10-18 20:39:36 +0900 ................................ ### Update TSV for clinvar-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-mondo.tsv is newer than config/clinvar-mondo/config.yaml # File output/tsv/clinvar-mondo.tsv is older than input/clinvar/download.lock ## Update config/clinvar-mondo/config.yaml => output/tsv/clinvar-mondo.tsv -< 2024-10-11T20:34:06 clinvar-mondo +< 2024-10-18T20:39:36 clinvar-mondo togoid-config config/clinvar-mondo update # Success: output/tsv/clinvar-mondo.tsv is updated -> 2024-10-11T20:35:35 clinvar-mondo +> 2024-10-18T20:41:06 clinvar-mondo Rule for TSV (output/tsv/clinvar-mondo.tsv) ------------------------------ Investigating output/tsv/clinvar-mondo.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:35:35 +0900 +timestamp: 2024-10-18 20:41:06 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-10-11 20:35:35 +0900) -latest-prerequisite time: 2024-10-11 20:35:35 +0900 +--prepare:clinvar (2024-10-18 20:41:06 +0900) +latest-prerequisite time: 2024-10-18 20:41:06 +0900 ................................ ### Update TSV for clinvar-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-ncbigene.tsv is newer than config/clinvar-ncbigene/config.yaml # File output/tsv/clinvar-ncbigene.tsv is older than input/clinvar/download.lock ## Update config/clinvar-ncbigene/config.yaml => output/tsv/clinvar-ncbigene.tsv -< 2024-10-11T20:35:35 clinvar-ncbigene +< 2024-10-18T20:41:06 clinvar-ncbigene togoid-config config/clinvar-ncbigene update # Success: output/tsv/clinvar-ncbigene.tsv is updated -> 2024-10-11T20:36:26 clinvar-ncbigene +> 2024-10-18T20:41:57 clinvar-ncbigene Rule for TSV (output/tsv/clinvar-ncbigene.tsv) ------------------------------ Investigating output/tsv/clinvar-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:36:26 +0900 +timestamp: 2024-10-18 20:41:57 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-10-11 20:36:26 +0900) -latest-prerequisite time: 2024-10-11 20:36:26 +0900 +--prepare:clinvar (2024-10-18 20:41:57 +0900) +latest-prerequisite time: 2024-10-18 20:41:57 +0900 ................................ ### Update TSV for clinvar-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-omim_phenotype.tsv is newer than config/clinvar-omim_phenotype/config.yaml # File output/tsv/clinvar-omim_phenotype.tsv is older than input/clinvar/download.lock ## Update config/clinvar-omim_phenotype/config.yaml => output/tsv/clinvar-omim_phenotype.tsv -< 2024-10-11T20:36:26 clinvar-omim_phenotype +< 2024-10-18T20:41:57 clinvar-omim_phenotype togoid-config config/clinvar-omim_phenotype update # Success: output/tsv/clinvar-omim_phenotype.tsv is updated -> 2024-10-11T20:37:57 clinvar-omim_phenotype +> 2024-10-18T20:43:27 clinvar-omim_phenotype Rule for TSV (output/tsv/clinvar-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/clinvar-omim_phenotype.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:37:57 +0900 +timestamp: 2024-10-18 20:43:27 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-10-11 20:37:57 +0900) -latest-prerequisite time: 2024-10-11 20:37:57 +0900 +--prepare:clinvar (2024-10-18 20:43:27 +0900) +latest-prerequisite time: 2024-10-18 20:43:27 +0900 ................................ ### Update TSV for clinvar-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-orphanet_phenotype.tsv is newer than config/clinvar-orphanet_phenotype/config.yaml # File output/tsv/clinvar-orphanet_phenotype.tsv is older than input/clinvar/download.lock ## Update config/clinvar-orphanet_phenotype/config.yaml => output/tsv/clinvar-orphanet_phenotype.tsv -< 2024-10-11T20:37:57 clinvar-orphanet_phenotype +< 2024-10-18T20:43:27 clinvar-orphanet_phenotype togoid-config config/clinvar-orphanet_phenotype update # Success: output/tsv/clinvar-orphanet_phenotype.tsv is updated -> 2024-10-11T20:39:26 clinvar-orphanet_phenotype +> 2024-10-18T20:44:56 clinvar-orphanet_phenotype Rule for TSV (output/tsv/clinvar-orphanet_phenotype.tsv) ------------------------------ Investigating output/tsv/clinvar-orphanet_phenotype.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:39:26 +0900 +timestamp: 2024-10-18 20:44:56 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-10-11 20:39:26 +0900) -latest-prerequisite time: 2024-10-11 20:39:26 +0900 +--prepare:clinvar (2024-10-18 20:44:56 +0900) +latest-prerequisite time: 2024-10-18 20:44:56 +0900 ................................ ### Update TSV for clinvar-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/clinvar-uniprot.tsv is newer than config/clinvar-uniprot/config.yaml # File output/tsv/clinvar-uniprot.tsv is older than input/clinvar/download.lock ## Update config/clinvar-uniprot/config.yaml => output/tsv/clinvar-uniprot.tsv -< 2024-10-11T20:39:26 clinvar-uniprot +< 2024-10-18T20:44:56 clinvar-uniprot togoid-config config/clinvar-uniprot update # Success: output/tsv/clinvar-uniprot.tsv is updated -> 2024-10-11T20:40:15 clinvar-uniprot +> 2024-10-18T20:45:46 clinvar-uniprot Rule for TSV (output/tsv/clinvar-uniprot.tsv) ------------------------------ Investigating output/tsv/clinvar-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:40:15 +0900 +timestamp: 2024-10-18 20:45:46 +0900 pre-requisites: --output/tsv/ () ---prepare:clinvar (2024-10-11 20:40:15 +0900) -latest-prerequisite time: 2024-10-11 20:40:15 +0900 +--prepare:clinvar (2024-10-18 20:45:46 +0900) +latest-prerequisite time: 2024-10-18 20:45:46 +0900 ................................ ### Update TSV for cog-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1099,8 +1098,8 @@ task needed: true timestamp: 2023-07-28 17:55:29 +0900 pre-requisites: --output/tsv/ () ---prepare:cog (2024-10-11 20:40:15 +0900) -latest-prerequisite time: 2024-10-11 20:40:15 +0900 +--prepare:cog (2024-10-18 20:45:46 +0900) +latest-prerequisite time: 2024-10-18 20:45:46 +0900 ................................ ### Update TSV for cog-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1115,163 +1114,163 @@ task needed: true timestamp: 2023-07-28 17:55:40 +0900 pre-requisites: --output/tsv/ () ---prepare:cog (2024-10-11 20:40:15 +0900) -latest-prerequisite time: 2024-10-11 20:40:15 +0900 +--prepare:cog (2024-10-18 20:45:46 +0900) +latest-prerequisite time: 2024-10-18 20:45:46 +0900 ................................ ### Update TSV for doid-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-mesh.tsv is newer than config/doid-mesh/config.yaml # File output/tsv/doid-mesh.tsv has no timestamp file -# File output/tsv/doid-mesh.tsv is created 5.027035664259456 days ago (will be updated when >5 days) +# File output/tsv/doid-mesh.tsv is created 7.0038232957658675 days ago (will be updated when >5 days) ## Update config/doid-mesh/config.yaml => output/tsv/doid-mesh.tsv -< 2024-10-11T20:40:15 doid-mesh +< 2024-10-18T20:45:46 doid-mesh togoid-config config/doid-mesh update # Success: output/tsv/doid-mesh.tsv is updated -> 2024-10-11T20:40:16 doid-mesh +> 2024-10-18T20:45:47 doid-mesh Rule for TSV (output/tsv/doid-mesh.tsv) ------------------------------ Investigating output/tsv/doid-mesh.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:40:16 +0900 +timestamp: 2024-10-18 20:45:47 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for doid-ncit_disease if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-ncit_disease.tsv is newer than config/doid-ncit_disease/config.yaml # File output/tsv/doid-ncit_disease.tsv has no timestamp file -# File output/tsv/doid-ncit_disease.tsv is created 5.027035645993333 days ago (will be updated when >5 days) +# File output/tsv/doid-ncit_disease.tsv is created 7.003823024343218 days ago (will be updated when >5 days) ## Update config/doid-ncit_disease/config.yaml => output/tsv/doid-ncit_disease.tsv -< 2024-10-11T20:40:16 doid-ncit_disease +< 2024-10-18T20:45:47 doid-ncit_disease togoid-config config/doid-ncit_disease update # Success: output/tsv/doid-ncit_disease.tsv is updated -> 2024-10-11T20:40:16 doid-ncit_disease +> 2024-10-18T20:45:47 doid-ncit_disease Rule for TSV (output/tsv/doid-ncit_disease.tsv) ------------------------------ Investigating output/tsv/doid-ncit_disease.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:40:16 +0900 +timestamp: 2024-10-18 20:45:47 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for doid-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/doid-omim_phenotype.tsv is newer than config/doid-omim_phenotype/config.yaml # File output/tsv/doid-omim_phenotype.tsv has no timestamp file -# File output/tsv/doid-omim_phenotype.tsv is created 5.02703604518699 days ago (will be updated when >5 days) +# File output/tsv/doid-omim_phenotype.tsv is created 7.003822867496794 days ago (will be updated when >5 days) ## Update config/doid-omim_phenotype/config.yaml => output/tsv/doid-omim_phenotype.tsv -< 2024-10-11T20:40:16 doid-omim_phenotype +< 2024-10-18T20:45:47 doid-omim_phenotype togoid-config config/doid-omim_phenotype update # Success: output/tsv/doid-omim_phenotype.tsv is updated -> 2024-10-11T20:40:17 doid-omim_phenotype +> 2024-10-18T20:45:47 doid-omim_phenotype Rule for TSV (output/tsv/doid-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/doid-omim_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:40:17 +0900 +timestamp: 2024-10-18 20:45:47 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for ensembl_gene-affy_probeset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-affy_probeset.tsv is newer than config/ensembl_gene-affy_probeset/config.yaml # File output/tsv/ensembl_gene-affy_probeset.tsv has no timestamp file -# File output/tsv/ensembl_gene-affy_probeset.tsv is created 5.026549795032466 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-affy_probeset.tsv is created 7.0032308969164125 days ago (will be updated when >5 days) ## Update config/ensembl_gene-affy_probeset/config.yaml => output/tsv/ensembl_gene-affy_probeset.tsv -< 2024-10-11T20:40:17 ensembl_gene-affy_probeset +< 2024-10-18T20:45:47 ensembl_gene-affy_probeset togoid-config config/ensembl_gene-affy_probeset update # Success: output/tsv/ensembl_gene-affy_probeset.tsv is updated -> 2024-10-11T20:41:08 ensembl_gene-affy_probeset +> 2024-10-18T20:54:13 ensembl_gene-affy_probeset Rule for TSV (output/tsv/ensembl_gene-affy_probeset.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-affy_probeset.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:41:08 +0900 +timestamp: 2024-10-18 20:54:13 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-10-11 20:41:08 +0900) -latest-prerequisite time: 2024-10-11 20:41:08 +0900 +--prepare:ensembl (2024-10-18 20:54:13 +0900) +latest-prerequisite time: 2024-10-18 20:54:13 +0900 ................................ ### Update TSV for ensembl_gene-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ensembl_protein.tsv is newer than config/ensembl_gene-ensembl_protein/config.yaml # File output/tsv/ensembl_gene-ensembl_protein.tsv has no timestamp file -# File output/tsv/ensembl_gene-ensembl_protein.tsv is created 5.025866889478865 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ensembl_protein.tsv is created 7.007840302459294 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ensembl_protein/config.yaml => output/tsv/ensembl_gene-ensembl_protein.tsv -< 2024-10-11T20:41:08 ensembl_gene-ensembl_protein +< 2024-10-18T20:54:13 ensembl_gene-ensembl_protein togoid-config config/ensembl_gene-ensembl_protein update # Success: output/tsv/ensembl_gene-ensembl_protein.tsv is updated -> 2024-10-11T20:42:56 ensembl_gene-ensembl_protein +> 2024-10-18T20:56:06 ensembl_gene-ensembl_protein Rule for TSV (output/tsv/ensembl_gene-ensembl_protein.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-ensembl_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:42:56 +0900 +timestamp: 2024-10-18 20:56:06 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-10-11 20:42:56 +0900) -latest-prerequisite time: 2024-10-11 20:42:56 +0900 +--prepare:ensembl (2024-10-18 20:56:06 +0900) +latest-prerequisite time: 2024-10-18 20:56:06 +0900 ................................ ### Update TSV for ensembl_gene-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ensembl_transcript.tsv is newer than config/ensembl_gene-ensembl_transcript/config.yaml # File output/tsv/ensembl_gene-ensembl_transcript.tsv has no timestamp file -# File output/tsv/ensembl_gene-ensembl_transcript.tsv is created 5.025694969883021 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ensembl_transcript.tsv is created 7.007752736262465 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ensembl_transcript/config.yaml => output/tsv/ensembl_gene-ensembl_transcript.tsv -< 2024-10-11T20:42:56 ensembl_gene-ensembl_transcript +< 2024-10-18T20:56:06 ensembl_gene-ensembl_transcript togoid-config config/ensembl_gene-ensembl_transcript update # Success: output/tsv/ensembl_gene-ensembl_transcript.tsv is updated -> 2024-10-11T20:44:56 ensembl_gene-ensembl_transcript +> 2024-10-18T20:58:09 ensembl_gene-ensembl_transcript Rule for TSV (output/tsv/ensembl_gene-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:44:56 +0900 +timestamp: 2024-10-18 20:58:09 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-10-11 20:44:56 +0900) -latest-prerequisite time: 2024-10-11 20:44:56 +0900 +--prepare:ensembl (2024-10-18 20:58:09 +0900) +latest-prerequisite time: 2024-10-18 20:58:09 +0900 ................................ ### Update TSV for ensembl_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-hgnc.tsv is newer than config/ensembl_gene-hgnc/config.yaml # File output/tsv/ensembl_gene-hgnc.tsv has no timestamp file -# File output/tsv/ensembl_gene-hgnc.tsv is created 5.027080015501956 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-hgnc.tsv is created 7.009174718070184 days ago (will be updated when >5 days) ## Update config/ensembl_gene-hgnc/config.yaml => output/tsv/ensembl_gene-hgnc.tsv -< 2024-10-11T20:44:56 ensembl_gene-hgnc +< 2024-10-18T20:58:09 ensembl_gene-hgnc togoid-config config/ensembl_gene-hgnc update # Success: output/tsv/ensembl_gene-hgnc.tsv is updated -> 2024-10-11T20:44:57 ensembl_gene-hgnc +> 2024-10-18T20:58:10 ensembl_gene-hgnc Rule for TSV (output/tsv/ensembl_gene-hgnc.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:44:57 +0900 +timestamp: 2024-10-18 20:58:10 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-10-11 20:44:57 +0900) -latest-prerequisite time: 2024-10-11 20:44:57 +0900 +--prepare:ensembl (2024-10-18 20:58:10 +0900) +latest-prerequisite time: 2024-10-18 20:58:10 +0900 ................................ ### Update TSV for ensembl_gene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-ncbigene.tsv is newer than config/ensembl_gene-ncbigene/config.yaml # File output/tsv/ensembl_gene-ncbigene.tsv has no timestamp file -# File output/tsv/ensembl_gene-ncbigene.tsv is created 5.0257474862301965 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-ncbigene.tsv is created 7.00781898936008 days ago (will be updated when >5 days) ## Update config/ensembl_gene-ncbigene/config.yaml => output/tsv/ensembl_gene-ncbigene.tsv -< 2024-10-11T20:44:57 ensembl_gene-ncbigene +< 2024-10-18T20:58:10 ensembl_gene-ncbigene togoid-config config/ensembl_gene-ncbigene update Warning: Failed to retrieve taxon:8840 in loop_count:1 Warning: Failed to retrieve taxon:9771 in loop_count:1 @@ -1337,25 +1336,25 @@ Warning: Failed to retrieve taxon:99837 in loop_count:1 Warning: Failed to retrieve taxon:37032 in loop_count:1 Warning: Failed to retrieve taxon:181631 in loop_count:1 # Success: output/tsv/ensembl_gene-ncbigene.tsv is updated -> 2024-10-11T20:46:54 ensembl_gene-ncbigene +> 2024-10-18T21:00:06 ensembl_gene-ncbigene Rule for TSV (output/tsv/ensembl_gene-ncbigene.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:46:54 +0900 +timestamp: 2024-10-18 21:00:06 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-10-11 20:46:54 +0900) -latest-prerequisite time: 2024-10-11 20:46:54 +0900 +--prepare:ensembl (2024-10-18 21:00:06 +0900) +latest-prerequisite time: 2024-10-18 21:00:06 +0900 ................................ ### Update TSV for ensembl_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_gene-uniprot.tsv is newer than config/ensembl_gene-uniprot/config.yaml # File output/tsv/ensembl_gene-uniprot.tsv has no timestamp file -# File output/tsv/ensembl_gene-uniprot.tsv is created 5.026210153148854 days ago (will be updated when >5 days) +# File output/tsv/ensembl_gene-uniprot.tsv is created 7.008176697093345 days ago (will be updated when >5 days) ## Update config/ensembl_gene-uniprot/config.yaml => output/tsv/ensembl_gene-uniprot.tsv -< 2024-10-11T20:46:54 ensembl_gene-uniprot +< 2024-10-18T21:00:06 ensembl_gene-uniprot togoid-config config/ensembl_gene-uniprot update Warning: Failed to retrieve taxon:9771 in loop_count:1 Warning: Failed to retrieve taxon:8823 in loop_count:1 @@ -1414,109 +1413,109 @@ Warning: Failed to retrieve taxon:37032 in loop_count:1 Warning: Failed to retrieve taxon:181631 in loop_count:1 Warning: Failed to retrieve taxon:9999 in loop_count:1 # Success: output/tsv/ensembl_gene-uniprot.tsv is updated -> 2024-10-11T20:48:20 ensembl_gene-uniprot +> 2024-10-18T21:01:30 ensembl_gene-uniprot Rule for TSV (output/tsv/ensembl_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/ensembl_gene-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:48:20 +0900 +timestamp: 2024-10-18 21:01:30 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-10-11 20:48:20 +0900) -latest-prerequisite time: 2024-10-11 20:48:20 +0900 +--prepare:ensembl (2024-10-18 21:01:30 +0900) +latest-prerequisite time: 2024-10-18 21:01:30 +0900 ................................ ### Update TSV for ensembl_protein-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_protein-ensembl_transcript.tsv is newer than config/ensembl_protein-ensembl_transcript/config.yaml # File output/tsv/ensembl_protein-ensembl_transcript.tsv has no timestamp file -# File output/tsv/ensembl_protein-ensembl_transcript.tsv is created 5.025800339259641 days ago (will be updated when >5 days) +# File output/tsv/ensembl_protein-ensembl_transcript.tsv is created 7.007847789417997 days ago (will be updated when >5 days) ## Update config/ensembl_protein-ensembl_transcript/config.yaml => output/tsv/ensembl_protein-ensembl_transcript.tsv -< 2024-10-11T20:48:20 ensembl_protein-ensembl_transcript +< 2024-10-18T21:01:30 ensembl_protein-ensembl_transcript togoid-config config/ensembl_protein-ensembl_transcript update # Success: output/tsv/ensembl_protein-ensembl_transcript.tsv is updated -> 2024-10-11T20:50:12 ensembl_protein-ensembl_transcript +> 2024-10-18T21:03:26 ensembl_protein-ensembl_transcript Rule for TSV (output/tsv/ensembl_protein-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/ensembl_protein-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:50:12 +0900 +timestamp: 2024-10-18 21:03:26 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-10-11 20:50:12 +0900) -latest-prerequisite time: 2024-10-11 20:50:12 +0900 +--prepare:ensembl (2024-10-18 21:03:26 +0900) +latest-prerequisite time: 2024-10-18 21:03:26 +0900 ................................ ### Update TSV for ensembl_transcript-affy_probeset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-affy_probeset.tsv is newer than config/ensembl_transcript-affy_probeset/config.yaml # File output/tsv/ensembl_transcript-affy_probeset.tsv has no timestamp file -# File output/tsv/ensembl_transcript-affy_probeset.tsv is created 5.026657349415301 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-affy_probeset.tsv is created 7.008542695860695 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-affy_probeset/config.yaml => output/tsv/ensembl_transcript-affy_probeset.tsv -< 2024-10-11T20:50:12 ensembl_transcript-affy_probeset +< 2024-10-18T21:03:26 ensembl_transcript-affy_probeset togoid-config config/ensembl_transcript-affy_probeset update # Success: output/tsv/ensembl_transcript-affy_probeset.tsv is updated -> 2024-10-11T20:51:08 ensembl_transcript-affy_probeset +> 2024-10-18T21:11:40 ensembl_transcript-affy_probeset Rule for TSV (output/tsv/ensembl_transcript-affy_probeset.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-affy_probeset.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:51:08 +0900 +timestamp: 2024-10-18 21:11:40 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-10-11 20:51:08 +0900) -latest-prerequisite time: 2024-10-11 20:51:08 +0900 +--prepare:ensembl (2024-10-18 21:11:40 +0900) +latest-prerequisite time: 2024-10-18 21:11:40 +0900 ................................ ### Update TSV for ensembl_transcript-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-go.tsv is newer than config/ensembl_transcript-go/config.yaml # File output/tsv/ensembl_transcript-go.tsv has no timestamp file -# File output/tsv/ensembl_transcript-go.tsv is created 5.0244756558901384 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-go.tsv is created 7.011464149574606 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-go/config.yaml => output/tsv/ensembl_transcript-go.tsv -< 2024-10-11T20:51:08 ensembl_transcript-go +< 2024-10-18T21:11:40 ensembl_transcript-go togoid-config config/ensembl_transcript-go update # Success: output/tsv/ensembl_transcript-go.tsv is updated -> 2024-10-11T20:55:10 ensembl_transcript-go +> 2024-10-18T21:15:43 ensembl_transcript-go Rule for TSV (output/tsv/ensembl_transcript-go.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:55:10 +0900 +timestamp: 2024-10-18 21:15:43 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-10-11 20:55:10 +0900) -latest-prerequisite time: 2024-10-11 20:55:10 +0900 +--prepare:ensembl (2024-10-18 21:15:43 +0900) +latest-prerequisite time: 2024-10-18 21:15:43 +0900 ................................ ### Update TSV for ensembl_transcript-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-hgnc.tsv is newer than config/ensembl_transcript-hgnc/config.yaml # File output/tsv/ensembl_transcript-hgnc.tsv has no timestamp file -# File output/tsv/ensembl_transcript-hgnc.tsv is created 5.027267333672616 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-hgnc.tsv is created 7.014258113859132 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-hgnc/config.yaml => output/tsv/ensembl_transcript-hgnc.tsv -< 2024-10-11T20:55:10 ensembl_transcript-hgnc +< 2024-10-18T21:15:43 ensembl_transcript-hgnc togoid-config config/ensembl_transcript-hgnc update # Success: output/tsv/ensembl_transcript-hgnc.tsv is updated -> 2024-10-11T20:55:11 ensembl_transcript-hgnc +> 2024-10-18T21:15:44 ensembl_transcript-hgnc Rule for TSV (output/tsv/ensembl_transcript-hgnc.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:55:11 +0900 +timestamp: 2024-10-18 21:15:44 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-10-11 20:55:11 +0900) -latest-prerequisite time: 2024-10-11 20:55:11 +0900 +--prepare:ensembl (2024-10-18 21:15:44 +0900) +latest-prerequisite time: 2024-10-18 21:15:44 +0900 ................................ ### Update TSV for ensembl_transcript-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ensembl_transcript-refseq_rna.tsv is newer than config/ensembl_transcript-refseq_rna/config.yaml # File output/tsv/ensembl_transcript-refseq_rna.tsv has no timestamp file -# File output/tsv/ensembl_transcript-refseq_rna.tsv is created 5.024952655398125 days ago (will be updated when >5 days) +# File output/tsv/ensembl_transcript-refseq_rna.tsv is created 7.011887949771528 days ago (will be updated when >5 days) ## Update config/ensembl_transcript-refseq_rna/config.yaml => output/tsv/ensembl_transcript-refseq_rna.tsv -< 2024-10-11T20:55:11 ensembl_transcript-refseq_rna +< 2024-10-18T21:15:44 ensembl_transcript-refseq_rna togoid-config config/ensembl_transcript-refseq_rna update Warning: Failed to retrieve taxon:8840 in loop_count:1 Warning: Failed to retrieve taxon:9771 in loop_count:1 @@ -1587,73 +1586,73 @@ Warning: Failed to retrieve taxon:99837 in loop_count:1 Warning: Failed to retrieve taxon:181631 in loop_count:1 Warning: Failed to retrieve taxon:99883 in loop_count:1 # Success: output/tsv/ensembl_transcript-refseq_rna.tsv is updated -> 2024-10-11T20:58:36 ensembl_transcript-refseq_rna +> 2024-10-18T21:19:07 ensembl_transcript-refseq_rna Rule for TSV (output/tsv/ensembl_transcript-refseq_rna.tsv) ------------------------------ Investigating output/tsv/ensembl_transcript-refseq_rna.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:58:36 +0900 +timestamp: 2024-10-18 21:19:07 +0900 pre-requisites: --output/tsv/ () ---prepare:ensembl (2024-10-11 20:58:36 +0900) -latest-prerequisite time: 2024-10-11 20:58:36 +0900 +--prepare:ensembl (2024-10-18 21:19:07 +0900) +latest-prerequisite time: 2024-10-18 21:19:07 +0900 ................................ ### Update TSV for gea-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/gea-bioproject.tsv is newer than config/gea-bioproject/config.yaml # File output/tsv/gea-bioproject.tsv has no timestamp file -# File output/tsv/gea-bioproject.tsv is created 5.027328340832384 days ago (will be updated when >5 days) +# File output/tsv/gea-bioproject.tsv is created 7.014232095051955 days ago (will be updated when >5 days) ## Update config/gea-bioproject/config.yaml => output/tsv/gea-bioproject.tsv -< 2024-10-11T20:58:36 gea-bioproject +< 2024-10-18T21:19:07 gea-bioproject togoid-config config/gea-bioproject update # Success: output/tsv/gea-bioproject.tsv is updated -> 2024-10-11T20:58:37 gea-bioproject +> 2024-10-18T21:19:07 gea-bioproject Rule for TSV (output/tsv/gea-bioproject.tsv) ------------------------------ Investigating output/tsv/gea-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:58:37 +0900 +timestamp: 2024-10-18 21:19:07 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for gea-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/gea-biosample.tsv is newer than config/gea-biosample/config.yaml # File output/tsv/gea-biosample.tsv has no timestamp file -# File output/tsv/gea-biosample.tsv is created 5.027328117562535 days ago (will be updated when >5 days) +# File output/tsv/gea-biosample.tsv is created 7.014231600494526 days ago (will be updated when >5 days) ## Update config/gea-biosample/config.yaml => output/tsv/gea-biosample.tsv -< 2024-10-11T20:58:37 gea-biosample +< 2024-10-18T21:19:07 gea-biosample togoid-config config/gea-biosample update # Success: output/tsv/gea-biosample.tsv is updated -> 2024-10-11T20:58:37 gea-biosample +> 2024-10-18T21:19:07 gea-biosample Rule for TSV (output/tsv/gea-biosample.tsv) ------------------------------ Investigating output/tsv/gea-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:58:37 +0900 +timestamp: 2024-10-18 21:19:07 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for glycomotif-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glycomotif-glytoucan.tsv is newer than config/glycomotif-glytoucan/config.yaml # File output/tsv/glycomotif-glytoucan.tsv has no timestamp file -# File output/tsv/glycomotif-glytoucan.tsv is created 55.98013836715283 days ago (will be updated when >5 days) +# File output/tsv/glycomotif-glytoucan.tsv is created 62.99437466890773 days ago (will be updated when >5 days) ## Update config/glycomotif-glytoucan/config.yaml => output/tsv/glycomotif-glytoucan.tsv -< 2024-10-11T20:58:37 glycomotif-glytoucan +< 2024-10-18T21:19:07 glycomotif-glytoucan togoid-config config/glycomotif-glytoucan update -Error: HTTP Error 502: Bad Gateway: https://api.alpha.glycosmos.org/partialmatch?wurcs=WURCS%3D2.0%2F4%2C11%2C10%2F%5Ba2122h-1b_1-5%5D%5Ba2112h-1b_1-5%5D%5Ba2122h-1b_1-5_2%2ANCC%2F3%3DO%5D%5Ba1221m-1a_1-5%5D%2F1-2-3-2-3-2-3-4-2-3-2%2Fa4-b1_b3-c1_c4-d1_d3-e1_e4-f1_f3-g1_g3-h1_g4-i1_i3-j1_j4-k1&rootnode=true G64227KZ +Error: HTTP Error 502: Bad Gateway: https://api.alpha.glycosmos.org/partialmatch?wurcs=WURCS%3D2.0%2F4%2C10%2C9%2F%5Ba2122h-1b_1-5%5D%5Ba2112h-1b_1-5%5D%5BAad21122h-2a_2-6_5%2ANCC%2F3%3DO%5D%5Ba2112h-1b_1-5_2%2ANCC%2F3%3DO%5D%2F1-2-3-3-3-4-2-3-3-3%2Fa4-b1_b3-c2_b4-f1_c8-d2_d8-e2_f3-g1_f6-j2_g3-h2_h8-i2&rootnode=true G14091MR # Error: output/tsv/glycomotif-glytoucan.tsv new file size per old 0 / 2804382 = 0.0 < 0.5 # Error: Failed to create output/tsv/glycomotif-glytoucan.tsv or created file was empty # Failure: output/tsv/glycomotif-glytoucan.tsv is not updated -> 2024-10-11T20:59:09 glycomotif-glytoucan +> 2024-10-18T21:19:43 glycomotif-glytoucan Rule for TSV (output/tsv/glycomotif-glytoucan.tsv) ------------------------------ Investigating output/tsv/glycomotif-glytoucan.tsv @@ -1662,19 +1661,19 @@ task needed: true timestamp: 2024-08-16 21:27:13 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for glytoucan-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-doid.tsv is newer than config/glytoucan-doid/config.yaml # File output/tsv/glytoucan-doid.tsv is older than input/glytoucan/download.lock ## Update config/glytoucan-doid/config.yaml => output/tsv/glytoucan-doid.tsv -< 2024-10-11T20:59:09 glytoucan-doid +< 2024-10-18T21:19:43 glytoucan-doid togoid-config config/glytoucan-doid update # Error: output/tsv/glytoucan-doid.tsv new file size per old 1538 / 4376 = 0.35146252285191953 < 0.5 # Failure: output/tsv/glytoucan-doid.tsv is not updated -> 2024-10-11T20:59:17 glytoucan-doid +> 2024-10-18T21:19:50 glytoucan-doid Rule for TSV (output/tsv/glytoucan-doid.tsv) ------------------------------ Investigating output/tsv/glytoucan-doid.tsv @@ -1683,59 +1682,59 @@ task needed: true timestamp: 2024-03-22 20:42:15 +0900 pre-requisites: --output/tsv/ () ---prepare:glytoucan (2024-10-11 20:59:17 +0900) -latest-prerequisite time: 2024-10-11 20:59:17 +0900 +--prepare:glytoucan (2024-10-18 21:19:50 +0900) +latest-prerequisite time: 2024-10-18 21:19:50 +0900 ................................ ### Update TSV for glytoucan-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-ncbigene.tsv is newer than config/glytoucan-ncbigene/config.yaml # File output/tsv/glytoucan-ncbigene.tsv is older than input/glytoucan/download.lock ## Update config/glytoucan-ncbigene/config.yaml => output/tsv/glytoucan-ncbigene.tsv -< 2024-10-11T20:59:17 glytoucan-ncbigene +< 2024-10-18T21:19:50 glytoucan-ncbigene togoid-config config/glytoucan-ncbigene update # Success: output/tsv/glytoucan-ncbigene.tsv is updated -> 2024-10-11T20:59:17 glytoucan-ncbigene +> 2024-10-18T21:19:51 glytoucan-ncbigene Rule for TSV (output/tsv/glytoucan-ncbigene.tsv) ------------------------------ Investigating output/tsv/glytoucan-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:59:17 +0900 +timestamp: 2024-10-18 21:19:51 +0900 pre-requisites: --output/tsv/ () ---prepare:glytoucan (2024-10-11 20:59:17 +0900) -latest-prerequisite time: 2024-10-11 20:59:17 +0900 +--prepare:glytoucan (2024-10-18 21:19:51 +0900) +latest-prerequisite time: 2024-10-18 21:19:51 +0900 ................................ ### Update TSV for glytoucan-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/glytoucan-uniprot.tsv is newer than config/glytoucan-uniprot/config.yaml # File output/tsv/glytoucan-uniprot.tsv is older than input/glytoucan/download.lock ## Update config/glytoucan-uniprot/config.yaml => output/tsv/glytoucan-uniprot.tsv -< 2024-10-11T20:59:17 glytoucan-uniprot +< 2024-10-18T21:19:51 glytoucan-uniprot togoid-config config/glytoucan-uniprot update # Success: output/tsv/glytoucan-uniprot.tsv is updated -> 2024-10-11T20:59:19 glytoucan-uniprot +> 2024-10-18T21:19:53 glytoucan-uniprot Rule for TSV (output/tsv/glytoucan-uniprot.tsv) ------------------------------ Investigating output/tsv/glytoucan-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 20:59:19 +0900 +timestamp: 2024-10-18 21:19:53 +0900 pre-requisites: --output/tsv/ () ---prepare:glytoucan (2024-10-11 20:59:19 +0900) -latest-prerequisite time: 2024-10-11 20:59:19 +0900 +--prepare:glytoucan (2024-10-18 21:19:53 +0900) +latest-prerequisite time: 2024-10-18 21:19:53 +0900 ................................ ### Update TSV for hgnc-ccds if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ccds.tsv is newer than config/hgnc-ccds/config.yaml # File output/tsv/hgnc-ccds.tsv is older than input/hgnc/download.lock ## Update config/hgnc-ccds/config.yaml => output/tsv/hgnc-ccds.tsv -< 2024-10-11T20:59:19 hgnc-ccds +< 2024-10-18T21:19:53 hgnc-ccds togoid-config config/hgnc-ccds update # Error: output/tsv/hgnc-ccds.tsv new file size per old 260816 / 544502 = 0.47899915886443023 < 0.5 # Failure: output/tsv/hgnc-ccds.tsv is not updated -> 2024-10-11T20:59:20 hgnc-ccds +> 2024-10-18T21:19:54 hgnc-ccds Rule for TSV (output/tsv/hgnc-ccds.tsv) ------------------------------ Investigating output/tsv/hgnc-ccds.tsv @@ -1744,232 +1743,288 @@ task needed: true timestamp: 2024-08-16 21:27:23 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:19:54 +0900) +latest-prerequisite time: 2024-10-18 21:19:54 +0900 ................................ -### Update TSV for hgnc-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ec.tsv is newer than config/hgnc-ec/config.yaml -# File output/tsv/hgnc-ec.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-ec.tsv +# File output/tsv/hgnc-ec.tsv is older than input/hgnc/download.lock +## Update config/hgnc-ec/config.yaml => output/tsv/hgnc-ec.tsv +< 2024-10-18T21:19:54 hgnc-ec +togoid-config config/hgnc-ec update +# Success: output/tsv/hgnc-ec.tsv is updated +> 2024-10-18T21:19:54 hgnc-ec Rule for TSV (output/tsv/hgnc-ec.tsv) ------------------------------ Investigating output/tsv/hgnc-ec.tsv class: Rake::FileTask task needed: true -timestamp: 2024-08-30 21:03:04 +0900 +timestamp: 2024-10-18 21:19:54 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:19:54 +0900) +latest-prerequisite time: 2024-10-18 21:19:54 +0900 ................................ -### Update TSV for hgnc-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ensembl_gene.tsv is newer than config/hgnc-ensembl_gene/config.yaml -# File output/tsv/hgnc-ensembl_gene.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-ensembl_gene.tsv +# File output/tsv/hgnc-ensembl_gene.tsv is older than input/hgnc/download.lock +## Update config/hgnc-ensembl_gene/config.yaml => output/tsv/hgnc-ensembl_gene.tsv +< 2024-10-18T21:19:54 hgnc-ensembl_gene +togoid-config config/hgnc-ensembl_gene update +# Success: output/tsv/hgnc-ensembl_gene.tsv is updated +> 2024-10-18T21:19:55 hgnc-ensembl_gene Rule for TSV (output/tsv/hgnc-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/hgnc-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-08-30 21:03:05 +0900 +timestamp: 2024-10-18 21:19:55 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:19:55 +0900) +latest-prerequisite time: 2024-10-18 21:19:55 +0900 ................................ -### Update TSV for hgnc-hgnc_symbol if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-hgnc_symbol if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-hgnc_symbol.tsv is newer than config/hgnc-hgnc_symbol/config.yaml -# File output/tsv/hgnc-hgnc_symbol.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-hgnc_symbol.tsv +# File output/tsv/hgnc-hgnc_symbol.tsv is older than input/hgnc/download.lock +## Update config/hgnc-hgnc_symbol/config.yaml => output/tsv/hgnc-hgnc_symbol.tsv +< 2024-10-18T21:19:55 hgnc-hgnc_symbol +togoid-config config/hgnc-hgnc_symbol update +# Success: output/tsv/hgnc-hgnc_symbol.tsv is updated +> 2024-10-18T21:19:55 hgnc-hgnc_symbol Rule for TSV (output/tsv/hgnc-hgnc_symbol.tsv) ------------------------------ Investigating output/tsv/hgnc-hgnc_symbol.tsv class: Rake::FileTask task needed: true -timestamp: 2024-08-30 21:03:05 +0900 +timestamp: 2024-10-18 21:19:55 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:19:55 +0900) +latest-prerequisite time: 2024-10-18 21:19:55 +0900 ................................ -### Update TSV for hgnc-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-insdc.tsv is newer than config/hgnc-insdc/config.yaml -# File output/tsv/hgnc-insdc.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-insdc.tsv +# File output/tsv/hgnc-insdc.tsv is older than input/hgnc/download.lock +## Update config/hgnc-insdc/config.yaml => output/tsv/hgnc-insdc.tsv +< 2024-10-18T21:19:55 hgnc-insdc +togoid-config config/hgnc-insdc update +# Success: output/tsv/hgnc-insdc.tsv is updated +> 2024-10-18T21:19:56 hgnc-insdc Rule for TSV (output/tsv/hgnc-insdc.tsv) ------------------------------ Investigating output/tsv/hgnc-insdc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-08-30 21:03:06 +0900 +timestamp: 2024-10-18 21:19:56 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:19:56 +0900) +latest-prerequisite time: 2024-10-18 21:19:56 +0900 ................................ -### Update TSV for hgnc-lrg if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-lrg if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-lrg.tsv is newer than config/hgnc-lrg/config.yaml -# File output/tsv/hgnc-lrg.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-lrg.tsv +# File output/tsv/hgnc-lrg.tsv is older than input/hgnc/download.lock +## Update config/hgnc-lrg/config.yaml => output/tsv/hgnc-lrg.tsv +< 2024-10-18T21:19:56 hgnc-lrg +togoid-config config/hgnc-lrg update +# Success: output/tsv/hgnc-lrg.tsv is updated +> 2024-10-18T21:19:56 hgnc-lrg Rule for TSV (output/tsv/hgnc-lrg.tsv) ------------------------------ Investigating output/tsv/hgnc-lrg.tsv class: Rake::FileTask task needed: true -timestamp: 2024-08-30 21:03:06 +0900 +timestamp: 2024-10-18 21:19:56 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:19:56 +0900) +latest-prerequisite time: 2024-10-18 21:19:56 +0900 ................................ -### Update TSV for hgnc-mgi_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-mgi_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-mgi_gene.tsv is newer than config/hgnc-mgi_gene/config.yaml -# File output/tsv/hgnc-mgi_gene.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-mgi_gene.tsv +# File output/tsv/hgnc-mgi_gene.tsv is older than input/hgnc/download.lock +## Update config/hgnc-mgi_gene/config.yaml => output/tsv/hgnc-mgi_gene.tsv +< 2024-10-18T21:19:56 hgnc-mgi_gene +togoid-config config/hgnc-mgi_gene update +# Success: output/tsv/hgnc-mgi_gene.tsv is updated +> 2024-10-18T21:19:57 hgnc-mgi_gene Rule for TSV (output/tsv/hgnc-mgi_gene.tsv) ------------------------------ Investigating output/tsv/hgnc-mgi_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-08-30 21:03:07 +0900 +timestamp: 2024-10-18 21:19:57 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:19:57 +0900) +latest-prerequisite time: 2024-10-18 21:19:57 +0900 ................................ -### Update TSV for hgnc-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-mirbase.tsv is newer than config/hgnc-mirbase/config.yaml -# File output/tsv/hgnc-mirbase.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-mirbase.tsv +# File output/tsv/hgnc-mirbase.tsv is older than input/hgnc/download.lock +## Update config/hgnc-mirbase/config.yaml => output/tsv/hgnc-mirbase.tsv +< 2024-10-18T21:19:57 hgnc-mirbase +togoid-config config/hgnc-mirbase update +# Success: output/tsv/hgnc-mirbase.tsv is updated +> 2024-10-18T21:19:57 hgnc-mirbase Rule for TSV (output/tsv/hgnc-mirbase.tsv) ------------------------------ Investigating output/tsv/hgnc-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-08-30 21:03:07 +0900 +timestamp: 2024-10-18 21:19:57 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:19:57 +0900) +latest-prerequisite time: 2024-10-18 21:19:57 +0900 ................................ -### Update TSV for hgnc-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-ncbigene.tsv is newer than config/hgnc-ncbigene/config.yaml -# File output/tsv/hgnc-ncbigene.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-ncbigene.tsv +# File output/tsv/hgnc-ncbigene.tsv is older than input/hgnc/download.lock +## Update config/hgnc-ncbigene/config.yaml => output/tsv/hgnc-ncbigene.tsv +< 2024-10-18T21:19:57 hgnc-ncbigene +togoid-config config/hgnc-ncbigene update +# Success: output/tsv/hgnc-ncbigene.tsv is updated +> 2024-10-18T21:19:58 hgnc-ncbigene Rule for TSV (output/tsv/hgnc-ncbigene.tsv) ------------------------------ Investigating output/tsv/hgnc-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-08-30 21:03:08 +0900 +timestamp: 2024-10-18 21:19:58 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:19:58 +0900) +latest-prerequisite time: 2024-10-18 21:19:58 +0900 ................................ -### Update TSV for hgnc-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-omim_gene.tsv is newer than config/hgnc-omim_gene/config.yaml -# File output/tsv/hgnc-omim_gene.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-omim_gene.tsv +# File output/tsv/hgnc-omim_gene.tsv is older than input/hgnc/download.lock +## Update config/hgnc-omim_gene/config.yaml => output/tsv/hgnc-omim_gene.tsv +< 2024-10-18T21:19:58 hgnc-omim_gene +togoid-config config/hgnc-omim_gene update +# Success: output/tsv/hgnc-omim_gene.tsv is updated +> 2024-10-18T21:19:58 hgnc-omim_gene Rule for TSV (output/tsv/hgnc-omim_gene.tsv) ------------------------------ Investigating output/tsv/hgnc-omim_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-08-30 21:03:08 +0900 +timestamp: 2024-10-18 21:19:58 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:19:58 +0900) +latest-prerequisite time: 2024-10-18 21:19:58 +0900 ................................ -### Update TSV for hgnc-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-pubmed.tsv is newer than config/hgnc-pubmed/config.yaml -# File output/tsv/hgnc-pubmed.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-pubmed.tsv +# File output/tsv/hgnc-pubmed.tsv is older than input/hgnc/download.lock +## Update config/hgnc-pubmed/config.yaml => output/tsv/hgnc-pubmed.tsv +< 2024-10-18T21:19:58 hgnc-pubmed +togoid-config config/hgnc-pubmed update +# Success: output/tsv/hgnc-pubmed.tsv is updated +> 2024-10-18T21:19:59 hgnc-pubmed Rule for TSV (output/tsv/hgnc-pubmed.tsv) ------------------------------ Investigating output/tsv/hgnc-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-08-30 21:03:09 +0900 +timestamp: 2024-10-18 21:19:59 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:19:59 +0900) +latest-prerequisite time: 2024-10-18 21:19:59 +0900 ................................ -### Update TSV for hgnc-refseq_genomic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-refseq_genomic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-refseq_genomic.tsv is newer than config/hgnc-refseq_genomic/config.yaml -# File output/tsv/hgnc-refseq_genomic.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-refseq_genomic.tsv +# File output/tsv/hgnc-refseq_genomic.tsv is older than input/hgnc/download.lock +## Update config/hgnc-refseq_genomic/config.yaml => output/tsv/hgnc-refseq_genomic.tsv +< 2024-10-18T21:19:59 hgnc-refseq_genomic +togoid-config config/hgnc-refseq_genomic update +# Success: output/tsv/hgnc-refseq_genomic.tsv is updated +> 2024-10-18T21:19:59 hgnc-refseq_genomic Rule for TSV (output/tsv/hgnc-refseq_genomic.tsv) ------------------------------ Investigating output/tsv/hgnc-refseq_genomic.tsv class: Rake::FileTask task needed: true -timestamp: 2024-08-30 21:03:09 +0900 +timestamp: 2024-10-18 21:19:59 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:19:59 +0900) +latest-prerequisite time: 2024-10-18 21:19:59 +0900 ................................ -### Update TSV for hgnc-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-refseq_rna.tsv is newer than config/hgnc-refseq_rna/config.yaml -# File output/tsv/hgnc-refseq_rna.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-refseq_rna.tsv +# File output/tsv/hgnc-refseq_rna.tsv is older than input/hgnc/download.lock +## Update config/hgnc-refseq_rna/config.yaml => output/tsv/hgnc-refseq_rna.tsv +< 2024-10-18T21:19:59 hgnc-refseq_rna +togoid-config config/hgnc-refseq_rna update +# Success: output/tsv/hgnc-refseq_rna.tsv is updated +> 2024-10-18T21:20:00 hgnc-refseq_rna Rule for TSV (output/tsv/hgnc-refseq_rna.tsv) ------------------------------ Investigating output/tsv/hgnc-refseq_rna.tsv class: Rake::FileTask task needed: true -timestamp: 2024-08-30 21:03:10 +0900 +timestamp: 2024-10-18 21:20:00 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:20:00 +0900) +latest-prerequisite time: 2024-10-18 21:20:00 +0900 ................................ -### Update TSV for hgnc-rgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-rgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-rgd.tsv is newer than config/hgnc-rgd/config.yaml -# File output/tsv/hgnc-rgd.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-rgd.tsv +# File output/tsv/hgnc-rgd.tsv is older than input/hgnc/download.lock +## Update config/hgnc-rgd/config.yaml => output/tsv/hgnc-rgd.tsv +< 2024-10-18T21:20:00 hgnc-rgd +togoid-config config/hgnc-rgd update +# Success: output/tsv/hgnc-rgd.tsv is updated +> 2024-10-18T21:20:01 hgnc-rgd Rule for TSV (output/tsv/hgnc-rgd.tsv) ------------------------------ Investigating output/tsv/hgnc-rgd.tsv class: Rake::FileTask task needed: true -timestamp: 2024-08-30 21:03:11 +0900 +timestamp: 2024-10-18 21:20:01 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:20:01 +0900) +latest-prerequisite time: 2024-10-18 21:20:01 +0900 ................................ -### Update TSV for hgnc-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for hgnc-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hgnc-uniprot.tsv is newer than config/hgnc-uniprot/config.yaml -# File output/tsv/hgnc-uniprot.tsv is newer than input/hgnc/download.lock -# => Preserving output/tsv/hgnc-uniprot.tsv +# File output/tsv/hgnc-uniprot.tsv is older than input/hgnc/download.lock +## Update config/hgnc-uniprot/config.yaml => output/tsv/hgnc-uniprot.tsv +< 2024-10-18T21:20:01 hgnc-uniprot +togoid-config config/hgnc-uniprot update +# Success: output/tsv/hgnc-uniprot.tsv is updated +> 2024-10-18T21:20:01 hgnc-uniprot Rule for TSV (output/tsv/hgnc-uniprot.tsv) ------------------------------ Investigating output/tsv/hgnc-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-08-30 21:03:11 +0900 +timestamp: 2024-10-18 21:20:01 +0900 pre-requisites: --output/tsv/ () ---prepare:hgnc (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hgnc (2024-10-18 21:20:01 +0900) +latest-prerequisite time: 2024-10-18 21:20:01 +0900 ................................ ### Update TSV for hmdb-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -1984,8 +2039,8 @@ task needed: true timestamp: 2023-07-03 13:03:28 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hmdb (2024-10-18 21:20:01 +0900) +latest-prerequisite time: 2024-10-18 21:20:01 +0900 ................................ ### Update TSV for hmdb-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2000,8 +2055,8 @@ task needed: true timestamp: 2023-07-03 13:03:51 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hmdb (2024-10-18 21:20:01 +0900) +latest-prerequisite time: 2024-10-18 21:20:01 +0900 ................................ ### Update TSV for hmdb-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2016,8 +2071,8 @@ task needed: true timestamp: 2024-01-20 02:10:47 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hmdb (2024-10-18 21:20:01 +0900) +latest-prerequisite time: 2024-10-18 21:20:01 +0900 ................................ ### Update TSV for hmdb-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2032,8 +2087,8 @@ task needed: true timestamp: 2023-07-03 13:06:27 +0900 pre-requisites: --output/tsv/ () ---prepare:hmdb (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:hmdb (2024-10-18 21:20:01 +0900) +latest-prerequisite time: 2024-10-18 21:20:01 +0900 ................................ ### Update TSV for homologene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2048,29 +2103,29 @@ task needed: true timestamp: 2023-06-02 19:58:16 +0900 pre-requisites: --output/tsv/ () ---prepare:homologene (2024-10-11 20:59:20 +0900) -latest-prerequisite time: 2024-10-11 20:59:20 +0900 +--prepare:homologene (2024-10-18 21:20:01 +0900) +latest-prerequisite time: 2024-10-18 21:20:01 +0900 ................................ ### Update TSV for hp_inheritance-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/hp_inheritance-omim_phenotype.tsv is newer than config/hp_inheritance-omim_phenotype/config.yaml # File output/tsv/hp_inheritance-omim_phenotype.tsv has no timestamp file -# File output/tsv/hp_inheritance-omim_phenotype.tsv is created 5.027324455870151 days ago (will be updated when >5 days) +# File output/tsv/hp_inheritance-omim_phenotype.tsv is created 7.01435553495478 days ago (will be updated when >5 days) ## Update config/hp_inheritance-omim_phenotype/config.yaml => output/tsv/hp_inheritance-omim_phenotype.tsv -< 2024-10-11T20:59:20 hp_inheritance-omim_phenotype +< 2024-10-18T21:20:01 hp_inheritance-omim_phenotype togoid-config config/hp_inheritance-omim_phenotype update # Success: output/tsv/hp_inheritance-omim_phenotype.tsv is updated -> 2024-10-11T20:59:21 hp_inheritance-omim_phenotype +> 2024-10-18T21:20:02 hp_inheritance-omim_phenotype Rule for TSV (output/tsv/hp_inheritance-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/hp_inheritance-omim_phenotype.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:59:21 +0900 +timestamp: 2024-10-18 21:20:02 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for hp_phenotype-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2085,8 +2140,8 @@ task needed: true timestamp: 2024-08-16 21:27:32 +0900 pre-requisites: --output/tsv/ () ---prepare:hp_phenotype (2024-10-11 20:59:21 +0900) -latest-prerequisite time: 2024-10-11 20:59:21 +0900 +--prepare:hp_phenotype (2024-10-18 21:20:02 +0900) +latest-prerequisite time: 2024-10-18 21:20:02 +0900 ................................ ### Update TSV for hp_phenotype-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2101,92 +2156,92 @@ task needed: true timestamp: 2024-08-16 21:27:33 +0900 pre-requisites: --output/tsv/ () ---prepare:hp_phenotype (2024-10-11 20:59:21 +0900) -latest-prerequisite time: 2024-10-11 20:59:21 +0900 +--prepare:hp_phenotype (2024-10-18 21:20:02 +0900) +latest-prerequisite time: 2024-10-18 21:20:02 +0900 ................................ ### Update TSV for insdc-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc-bioproject.tsv is newer than config/insdc-bioproject/config.yaml # File output/tsv/insdc-bioproject.tsv has no timestamp file -# File output/tsv/insdc-bioproject.tsv is created 5.027069544204745 days ago (will be updated when >5 days) +# File output/tsv/insdc-bioproject.tsv is created 7.014096726773368 days ago (will be updated when >5 days) ## Update config/insdc-bioproject/config.yaml => output/tsv/insdc-bioproject.tsv -< 2024-10-11T20:59:21 insdc-bioproject +< 2024-10-18T21:20:02 insdc-bioproject togoid-config config/insdc-bioproject update # Success: output/tsv/insdc-bioproject.tsv is updated -> 2024-10-11T20:59:44 insdc-bioproject +> 2024-10-18T21:20:29 insdc-bioproject Rule for TSV (output/tsv/insdc-bioproject.tsv) ------------------------------ Investigating output/tsv/insdc-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 20:59:44 +0900 +timestamp: 2024-10-18 21:20:29 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for insdc-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc-biosample.tsv is newer than config/insdc-biosample/config.yaml # File output/tsv/insdc-biosample.tsv has no timestamp file -# File output/tsv/insdc-biosample.tsv is created 5.02645981861706 days ago (will be updated when >5 days) +# File output/tsv/insdc-biosample.tsv is created 7.013526151151146 days ago (will be updated when >5 days) ## Update config/insdc-biosample/config.yaml => output/tsv/insdc-biosample.tsv -< 2024-10-11T20:59:44 insdc-biosample +< 2024-10-18T21:20:29 insdc-biosample togoid-config config/insdc-biosample update # Success: output/tsv/insdc-biosample.tsv is updated -> 2024-10-11T21:01:00 insdc-biosample +> 2024-10-18T21:21:55 insdc-biosample Rule for TSV (output/tsv/insdc-biosample.tsv) ------------------------------ Investigating output/tsv/insdc-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 21:01:00 +0900 +timestamp: 2024-10-18 21:21:55 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for insdc_master-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc_master-bioproject.tsv is newer than config/insdc_master-bioproject/config.yaml # File output/tsv/insdc_master-bioproject.tsv has no timestamp file -# File output/tsv/insdc_master-bioproject.tsv is created 5.027323621952847 days ago (will be updated when >5 days) +# File output/tsv/insdc_master-bioproject.tsv is created 7.014503328638345 days ago (will be updated when >5 days) ## Update config/insdc_master-bioproject/config.yaml => output/tsv/insdc_master-bioproject.tsv -< 2024-10-11T21:01:00 insdc_master-bioproject +< 2024-10-18T21:21:55 insdc_master-bioproject togoid-config config/insdc_master-bioproject update # Success: output/tsv/insdc_master-bioproject.tsv is updated -> 2024-10-11T21:01:02 insdc_master-bioproject +> 2024-10-18T21:21:57 insdc_master-bioproject Rule for TSV (output/tsv/insdc_master-bioproject.tsv) ------------------------------ Investigating output/tsv/insdc_master-bioproject.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 21:01:02 +0900 +timestamp: 2024-10-18 21:21:57 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for insdc_master-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/insdc_master-biosample.tsv is newer than config/insdc_master-biosample/config.yaml # File output/tsv/insdc_master-biosample.tsv has no timestamp file -# File output/tsv/insdc_master-biosample.tsv is created 5.027322765730267 days ago (will be updated when >5 days) +# File output/tsv/insdc_master-biosample.tsv is created 7.014507826837511 days ago (will be updated when >5 days) ## Update config/insdc_master-biosample/config.yaml => output/tsv/insdc_master-biosample.tsv -< 2024-10-11T21:01:02 insdc_master-biosample +< 2024-10-18T21:21:57 insdc_master-biosample togoid-config config/insdc_master-biosample update # Success: output/tsv/insdc_master-biosample.tsv is updated -> 2024-10-11T21:01:03 insdc_master-biosample +> 2024-10-18T21:21:58 insdc_master-biosample Rule for TSV (output/tsv/insdc_master-biosample.tsv) ------------------------------ Investigating output/tsv/insdc_master-biosample.tsv class: Rake::FileTask task needed: false -timestamp: 2024-10-11 21:01:03 +0900 +timestamp: 2024-10-18 21:21:58 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for interpro-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2201,8 +2256,8 @@ task needed: true timestamp: 2024-10-06 20:21:42 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-10-11 21:01:03 +0900) -latest-prerequisite time: 2024-10-11 21:01:03 +0900 +--prepare:interpro (2024-10-18 21:21:58 +0900) +latest-prerequisite time: 2024-10-18 21:21:58 +0900 ................................ ### Update TSV for interpro-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2217,8 +2272,8 @@ task needed: true timestamp: 2024-10-06 20:21:44 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-10-11 21:01:03 +0900) -latest-prerequisite time: 2024-10-11 21:01:03 +0900 +--prepare:interpro (2024-10-18 21:21:58 +0900) +latest-prerequisite time: 2024-10-18 21:21:58 +0900 ................................ ### Update TSV for interpro-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2233,8 +2288,8 @@ task needed: true timestamp: 2024-10-06 20:21:46 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-10-11 21:01:03 +0900) -latest-prerequisite time: 2024-10-11 21:01:03 +0900 +--prepare:interpro (2024-10-18 21:21:58 +0900) +latest-prerequisite time: 2024-10-18 21:21:58 +0900 ................................ ### Update TSV for interpro-prosite if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2249,8 +2304,8 @@ task needed: true timestamp: 2024-10-06 20:21:47 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-10-11 21:01:03 +0900) -latest-prerequisite time: 2024-10-11 21:01:03 +0900 +--prepare:interpro (2024-10-18 21:21:58 +0900) +latest-prerequisite time: 2024-10-18 21:21:58 +0900 ................................ ### Update TSV for interpro-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2265,8 +2320,8 @@ task needed: true timestamp: 2024-10-06 20:21:49 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-10-11 21:01:03 +0900) -latest-prerequisite time: 2024-10-11 21:01:03 +0900 +--prepare:interpro (2024-10-18 21:21:58 +0900) +latest-prerequisite time: 2024-10-18 21:21:58 +0900 ................................ ### Update TSV for interpro-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2281,8 +2336,8 @@ task needed: true timestamp: 2024-10-06 20:21:51 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-10-11 21:01:03 +0900) -latest-prerequisite time: 2024-10-11 21:01:03 +0900 +--prepare:interpro (2024-10-18 21:21:58 +0900) +latest-prerequisite time: 2024-10-18 21:21:58 +0900 ................................ ### Update TSV for interpro-smart if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2297,8 +2352,8 @@ task needed: true timestamp: 2024-10-06 20:21:53 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-10-11 21:01:03 +0900) -latest-prerequisite time: 2024-10-11 21:01:03 +0900 +--prepare:interpro (2024-10-18 21:21:58 +0900) +latest-prerequisite time: 2024-10-18 21:21:58 +0900 ................................ ### Update TSV for interpro-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -2313,67 +2368,79 @@ task needed: true timestamp: 2024-10-07 00:10:25 +0900 pre-requisites: --output/tsv/ () ---prepare:interpro (2024-10-11 21:01:03 +0900) -latest-prerequisite time: 2024-10-11 21:01:03 +0900 +--prepare:interpro (2024-10-18 21:21:58 +0900) +latest-prerequisite time: 2024-10-18 21:21:58 +0900 ................................ -### Update TSV for jga_study-jga_dataset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for jga_study-jga_dataset if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-jga_dataset.tsv is newer than config/jga_study-jga_dataset/config.yaml # File output/tsv/jga_study-jga_dataset.tsv has no timestamp file -# File output/tsv/jga_study-jga_dataset.tsv is created 4.8684779829223155 days ago (will be updated when >5 days) -# => Preserving output/tsv/jga_study-jga_dataset.tsv +# File output/tsv/jga_study-jga_dataset.tsv is created 11.88300357598882 days ago (will be updated when >5 days) +## Update config/jga_study-jga_dataset/config.yaml => output/tsv/jga_study-jga_dataset.tsv +< 2024-10-18T21:21:58 jga_study-jga_dataset +togoid-config config/jga_study-jga_dataset update +# Success: output/tsv/jga_study-jga_dataset.tsv is updated +> 2024-10-18T21:21:59 jga_study-jga_dataset Rule for TSV (output/tsv/jga_study-jga_dataset.tsv) ------------------------------ Investigating output/tsv/jga_study-jga_dataset.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 00:10:27 +0900 +task needed: false +timestamp: 2024-10-18 21:21:59 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for jga_study-nbdc_human_db if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for jga_study-nbdc_human_db if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-nbdc_human_db.tsv is newer than config/jga_study-nbdc_human_db/config.yaml # File output/tsv/jga_study-nbdc_human_db.tsv has no timestamp file -# File output/tsv/jga_study-nbdc_human_db.tsv is created 4.8684734665161695 days ago (will be updated when >5 days) -# => Preserving output/tsv/jga_study-nbdc_human_db.tsv +# File output/tsv/jga_study-nbdc_human_db.tsv is created 11.883006066844642 days ago (will be updated when >5 days) +## Update config/jga_study-nbdc_human_db/config.yaml => output/tsv/jga_study-nbdc_human_db.tsv +< 2024-10-18T21:21:59 jga_study-nbdc_human_db +togoid-config config/jga_study-nbdc_human_db update +# Success: output/tsv/jga_study-nbdc_human_db.tsv is updated +> 2024-10-18T21:21:59 jga_study-nbdc_human_db Rule for TSV (output/tsv/jga_study-nbdc_human_db.tsv) ------------------------------ Investigating output/tsv/jga_study-nbdc_human_db.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 00:10:27 +0900 +task needed: false +timestamp: 2024-10-18 21:21:59 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for jga_study-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for jga_study-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/jga_study-pubmed.tsv is newer than config/jga_study-pubmed/config.yaml # File output/tsv/jga_study-pubmed.tsv has no timestamp file -# File output/tsv/jga_study-pubmed.tsv is created 4.8684686857284145 days ago (will be updated when >5 days) -# => Preserving output/tsv/jga_study-pubmed.tsv +# File output/tsv/jga_study-pubmed.tsv is created 11.883006302614733 days ago (will be updated when >5 days) +## Update config/jga_study-pubmed/config.yaml => output/tsv/jga_study-pubmed.tsv +< 2024-10-18T21:21:59 jga_study-pubmed +togoid-config config/jga_study-pubmed update +# Success: output/tsv/jga_study-pubmed.tsv is updated +> 2024-10-18T21:22:00 jga_study-pubmed Rule for TSV (output/tsv/jga_study-pubmed.tsv) ------------------------------ Investigating output/tsv/jga_study-pubmed.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 00:10:28 +0900 +task needed: false +timestamp: 2024-10-18 21:22:00 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for lipidmaps-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-chebi.tsv is newer than config/lipidmaps-chebi/config.yaml # File output/tsv/lipidmaps-chebi.tsv has no timestamp file -# File output/tsv/lipidmaps-chebi.tsv is created 20.68905855340698 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-chebi.tsv is created 27.70360147658065 days ago (will be updated when >5 days) ## Update config/lipidmaps-chebi/config.yaml => output/tsv/lipidmaps-chebi.tsv -< 2024-10-11T21:01:03 lipidmaps-chebi +< 2024-10-18T21:22:00 lipidmaps-chebi togoid-config config/lipidmaps-chebi update # Error: output/tsv/lipidmaps-chebi.tsv new file size per old 248 / 253350 = 0.0009788829682257747 < 0.5 # Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML @@ -2393,7 +2460,7 @@ togoid-config config/lipidmaps-chebi update # Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML problems. Please try again later.

# Error: output/tsv/lipidmaps-chebi.tsv seems to contain HTML # Failure: output/tsv/lipidmaps-chebi.tsv is not updated -> 2024-10-11T21:01:06 lipidmaps-chebi +> 2024-10-18T21:22:03 lipidmaps-chebi Rule for TSV (output/tsv/lipidmaps-chebi.tsv) ------------------------------ Investigating output/tsv/lipidmaps-chebi.tsv @@ -2402,16 +2469,16 @@ task needed: true timestamp: 2024-09-21 04:28:49 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for lipidmaps-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-inchi_key.tsv is newer than config/lipidmaps-inchi_key/config.yaml # File output/tsv/lipidmaps-inchi_key.tsv has no timestamp file -# File output/tsv/lipidmaps-inchi_key.tsv is created 20.689047506271365 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-inchi_key.tsv is created 27.70359093376825 days ago (will be updated when >5 days) ## Update config/lipidmaps-inchi_key/config.yaml => output/tsv/lipidmaps-inchi_key.tsv -< 2024-10-11T21:01:06 lipidmaps-inchi_key +< 2024-10-18T21:22:03 lipidmaps-inchi_key togoid-config config/lipidmaps-inchi_key update # Error: output/tsv/lipidmaps-inchi_key.tsv new file size per old 248 / 1976727 = 0.0001254599142926666 < 0.5 # Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML @@ -2431,7 +2498,7 @@ togoid-config config/lipidmaps-inchi_key update # Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML problems. Please try again later.

# Error: output/tsv/lipidmaps-inchi_key.tsv seems to contain HTML # Failure: output/tsv/lipidmaps-inchi_key.tsv is not updated -> 2024-10-11T21:01:08 lipidmaps-inchi_key +> 2024-10-18T21:22:04 lipidmaps-inchi_key Rule for TSV (output/tsv/lipidmaps-inchi_key.tsv) ------------------------------ Investigating output/tsv/lipidmaps-inchi_key.tsv @@ -2440,16 +2507,16 @@ task needed: true timestamp: 2024-09-21 04:28:53 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for lipidmaps-swisslipids if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/lipidmaps-swisslipids.tsv is newer than config/lipidmaps-swisslipids/config.yaml # File output/tsv/lipidmaps-swisslipids.tsv has no timestamp file -# File output/tsv/lipidmaps-swisslipids.tsv is created 20.689028449531854 days ago (will be updated when >5 days) +# File output/tsv/lipidmaps-swisslipids.tsv is created 27.703572830859027 days ago (will be updated when >5 days) ## Update config/lipidmaps-swisslipids/config.yaml => output/tsv/lipidmaps-swisslipids.tsv -< 2024-10-11T21:01:08 lipidmaps-swisslipids +< 2024-10-18T21:22:04 lipidmaps-swisslipids togoid-config config/lipidmaps-swisslipids update # Error: output/tsv/lipidmaps-swisslipids.tsv new file size per old 248 / 284047 = 0.0008730949455547849 < 0.5 # Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML @@ -2469,7 +2536,7 @@ togoid-config config/lipidmaps-swisslipids update # Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML problems. Please try again later.

# Error: output/tsv/lipidmaps-swisslipids.tsv seems to contain HTML # Failure: output/tsv/lipidmaps-swisslipids.tsv is not updated -> 2024-10-11T21:01:09 lipidmaps-swisslipids +> 2024-10-18T21:22:06 lipidmaps-swisslipids Rule for TSV (output/tsv/lipidmaps-swisslipids.tsv) ------------------------------ Investigating output/tsv/lipidmaps-swisslipids.tsv @@ -2478,317 +2545,632 @@ task needed: true timestamp: 2024-09-21 04:28:56 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for mbgd_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for mbgd_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mbgd_gene-uniprot.tsv is newer than config/mbgd_gene-uniprot/config.yaml # File output/tsv/mbgd_gene-uniprot.tsv has no timestamp file -# File output/tsv/mbgd_gene-uniprot.tsv is created 4.83852375560118 days ago (will be updated when >5 days) -# => Preserving output/tsv/mbgd_gene-uniprot.tsv +# File output/tsv/mbgd_gene-uniprot.tsv is created 11.85306963658839 days ago (will be updated when >5 days) +## Update config/mbgd_gene-uniprot/config.yaml => output/tsv/mbgd_gene-uniprot.tsv +< 2024-10-18T21:22:06 mbgd_gene-uniprot +togoid-config config/mbgd_gene-uniprot update +Warning: Failed to retrieve taxon:cdg in loop_count:1 +Warning: Failed to retrieve taxon:coe in loop_count:1 +Warning: Failed to retrieve taxon:ene in loop_count:1 +Warning: Failed to retrieve taxon:chr in loop_count:1 +Warning: Failed to retrieve taxon:hpyr in loop_count:1 +Warning: Failed to retrieve taxon:lmoe in loop_count:1 +Warning: Failed to retrieve taxon:gm02408 in loop_count:1 +Warning: Failed to retrieve taxon:hhm in loop_count:1 +Warning: Failed to retrieve taxon:hpym in loop_count:1 +Warning: Failed to retrieve taxon:ctln in loop_count:1 +Warning: Failed to retrieve taxon:gm02410 in loop_count:1 +Warning: Failed to retrieve taxon:amal in loop_count:1 +Warning: Failed to retrieve taxon:lmob in loop_count:1 +Warning: Failed to retrieve taxon:cjei in loop_count:1 +Warning: Failed to retrieve taxon:sik in loop_count:1 +Warning: Failed to retrieve taxon:srb in loop_count:1 +Warning: Failed to retrieve taxon:axn in loop_count:1 +Warning: Failed to retrieve taxon:gm02954 in loop_count:1 +Warning: Failed to retrieve taxon:axo in loop_count:1 +Warning: Failed to retrieve taxon:lpm in loop_count:1 +Warning: Failed to retrieve taxon:hem in loop_count:1 +Warning: Failed to retrieve taxon:hpaz in loop_count:1 +Warning: Failed to retrieve taxon:sagr in loop_count:1 +Warning: Failed to retrieve taxon:dmg in loop_count:1 +Warning: Failed to retrieve taxon:nev in loop_count:1 +Warning: Failed to retrieve taxon:gm02988 in loop_count:1 +Warning: Failed to retrieve taxon:gm02989 in loop_count:1 +Warning: Failed to retrieve taxon:gm02990 in loop_count:1 +Warning: Failed to retrieve taxon:gm02835 in loop_count:1 +Warning: Failed to retrieve taxon:gm02950 in loop_count:1 +Warning: Failed to retrieve taxon:gm02997 in loop_count:1 +Warning: Failed to retrieve taxon:bcee in loop_count:1 +Warning: Failed to retrieve taxon:gm02986 in loop_count:1 +Warning: Failed to retrieve taxon:gm02994 in loop_count:1 +Warning: Failed to retrieve taxon:gm02995 in loop_count:1 +Warning: Failed to retrieve taxon:gm02996 in loop_count:1 +Warning: Failed to retrieve taxon:ppol in loop_count:1 +Warning: Failed to retrieve taxon:gm02958 in loop_count:1 +Warning: Failed to retrieve taxon:gm02978 in loop_count:1 +Warning: Failed to retrieve taxon:gm02979 in loop_count:1 +Warning: Failed to retrieve taxon:gm02980 in loop_count:1 +Warning: Failed to retrieve taxon:gm02981 in loop_count:1 +Warning: Failed to retrieve taxon:gm02993 in loop_count:1 +Warning: Failed to retrieve taxon:gm03003 in loop_count:1 +Warning: Failed to retrieve taxon:gm03004 in loop_count:1 +Warning: Failed to retrieve taxon:gm03005 in loop_count:1 +Warning: Failed to retrieve taxon:gm02952 in loop_count:1 +Warning: Failed to retrieve taxon:gm02953 in loop_count:1 +Warning: Failed to retrieve taxon:nvn in loop_count:1 +Warning: Failed to retrieve taxon:gm03001 in loop_count:1 +Warning: Failed to retrieve taxon:gm03002 in loop_count:1 +Warning: Failed to retrieve taxon:gm03155 in loop_count:1 +Warning: Failed to retrieve taxon:gm03139 in loop_count:1 +Warning: Failed to retrieve taxon:paec in loop_count:1 +Warning: Failed to retrieve taxon:paeo in loop_count:1 +Warning: Failed to retrieve taxon:spyo in loop_count:1 +Warning: Failed to retrieve taxon:gm03151 in loop_count:1 +Warning: Failed to retrieve taxon:gm03336 in loop_count:1 +Warning: Failed to retrieve taxon:gm03182 in loop_count:1 +Warning: Failed to retrieve taxon:hct in loop_count:1 +Warning: Failed to retrieve taxon:paei in loop_count:1 +Warning: Failed to retrieve taxon:paev in loop_count:1 +Warning: Failed to retrieve taxon:gm03365 in loop_count:1 +Warning: Failed to retrieve taxon:sio in loop_count:1 +Warning: Failed to retrieve taxon:siq in loop_count:1 +Warning: Failed to retrieve taxon:gm03361 in loop_count:1 +Warning: Failed to retrieve taxon:gm03425 in loop_count:1 +Warning: Failed to retrieve taxon:kpk in loop_count:1 +Warning: Failed to retrieve taxon:gm03413 in loop_count:1 +Warning: Failed to retrieve taxon:yel in loop_count:1 +Warning: Failed to retrieve taxon:gba in loop_count:1 +Warning: Failed to retrieve taxon:gm03667 in loop_count:1 +Warning: Failed to retrieve taxon:gm03600 in loop_count:1 +Warning: Failed to retrieve taxon:nid in loop_count:1 +Warning: Failed to retrieve taxon:mthe in loop_count:1 +Warning: Failed to retrieve taxon:gm03592 in loop_count:1 +Warning: Failed to retrieve taxon:gm03687 in loop_count:1 +Warning: Failed to retrieve taxon:gm03688 in loop_count:1 +Warning: Failed to retrieve taxon:gm03689 in loop_count:1 +Warning: Failed to retrieve taxon:gm03554 in loop_count:1 +Warning: Failed to retrieve taxon:alu in loop_count:1 +Warning: Failed to retrieve taxon:agw in loop_count:1 +Warning: Failed to retrieve taxon:arg in loop_count:1 +Warning: Failed to retrieve taxon:gm03624 in loop_count:1 +Warning: Failed to retrieve taxon:gm03679 in loop_count:1 +Warning: Failed to retrieve taxon:gm03680 in loop_count:1 +Warning: Failed to retrieve taxon:gm03681 in loop_count:1 +Warning: Failed to retrieve taxon:gm03682 in loop_count:1 +Warning: Failed to retrieve taxon:gm03683 in loop_count:1 +Warning: Failed to retrieve taxon:gm03684 in loop_count:1 +Warning: Failed to retrieve taxon:gm03685 in loop_count:1 +Warning: Failed to retrieve taxon:gm03686 in loop_count:1 +Warning: Failed to retrieve taxon:gm03674 in loop_count:1 +Warning: Failed to retrieve taxon:gm03675 in loop_count:1 +Warning: Failed to retrieve taxon:gm03676 in loop_count:1 +Warning: Failed to retrieve taxon:gm03677 in loop_count:1 +Warning: Failed to retrieve taxon:gm03678 in loop_count:1 +Warning: Failed to retrieve taxon:msz in loop_count:1 +Warning: Failed to retrieve taxon:bchi in loop_count:1 +Warning: Failed to retrieve taxon:bbgw in loop_count:1 +Warning: Failed to retrieve taxon:bgw in loop_count:1 +Warning: Failed to retrieve taxon:gm04044 in loop_count:1 +Warning: Failed to retrieve taxon:hcc in loop_count:1 +Warning: Failed to retrieve taxon:hcd in loop_count:1 +Warning: Failed to retrieve taxon:srg in loop_count:1 +Warning: Failed to retrieve taxon:tmg in loop_count:1 +Warning: Failed to retrieve taxon:gm03996 in loop_count:1 +Warning: Failed to retrieve taxon:gm04001 in loop_count:1 +Warning: Failed to retrieve taxon:plb in loop_count:1 +Warning: Failed to retrieve taxon:plc in loop_count:1 +Warning: Failed to retrieve taxon:pli in loop_count:1 +Warning: Failed to retrieve taxon:gm04124 in loop_count:1 +Warning: Failed to retrieve taxon:gm04125 in loop_count:1 +Warning: Failed to retrieve taxon:gm06281 in loop_count:1 +Warning: Failed to retrieve taxon:gm06283 in loop_count:1 +Warning: Failed to retrieve taxon:gm04174 in loop_count:1 +Warning: Failed to retrieve taxon:gm04275 in loop_count:1 +Warning: Failed to retrieve taxon:gm04705 in loop_count:1 +Warning: Failed to retrieve taxon:gm04817 in loop_count:1 +Warning: Failed to retrieve taxon:gm04818 in loop_count:1 +Warning: Failed to retrieve taxon:gm04824 in loop_count:1 +Warning: Failed to retrieve taxon:gm04529 in loop_count:1 +Warning: Failed to retrieve taxon:gm04861 in loop_count:1 +Warning: Failed to retrieve taxon:gm04864 in loop_count:1 +Warning: Failed to retrieve taxon:gm04248 in loop_count:1 +Warning: Failed to retrieve taxon:gm04841 in loop_count:1 +Warning: Failed to retrieve taxon:gm04842 in loop_count:1 +Warning: Failed to retrieve taxon:gm04844 in loop_count:1 +Warning: Failed to retrieve taxon:gm04845 in loop_count:1 +Warning: Failed to retrieve taxon:gm04870 in loop_count:1 +Warning: Failed to retrieve taxon:gm04783 in loop_count:1 +Warning: Failed to retrieve taxon:gm04877 in loop_count:1 +Warning: Failed to retrieve taxon:gm04788 in loop_count:1 +Warning: Failed to retrieve taxon:gm04819 in loop_count:1 +Warning: Failed to retrieve taxon:gm04820 in loop_count:1 +Warning: Failed to retrieve taxon:senb in loop_count:1 +Warning: Failed to retrieve taxon:gm04858 in loop_count:1 +Warning: Failed to retrieve taxon:gm04594 in loop_count:1 +Warning: Failed to retrieve taxon:gm04596 in loop_count:1 +Warning: Failed to retrieve taxon:gm04597 in loop_count:1 +Warning: Failed to retrieve taxon:gm04686 in loop_count:1 +Warning: Failed to retrieve taxon:gm04825 in loop_count:1 +Warning: Failed to retrieve taxon:gm04826 in loop_count:1 +Warning: Failed to retrieve taxon:gm04829 in loop_count:1 +Warning: Failed to retrieve taxon:gm04830 in loop_count:1 +Warning: Failed to retrieve taxon:gm04834 in loop_count:1 +Warning: Failed to retrieve taxon:gm04853 in loop_count:1 +Warning: Failed to retrieve taxon:gm04854 in loop_count:1 +Warning: Failed to retrieve taxon:gm04862 in loop_count:1 +Warning: Failed to retrieve taxon:gm04863 in loop_count:1 +Warning: Failed to retrieve taxon:gm04804 in loop_count:1 +Warning: Failed to retrieve taxon:gm04805 in loop_count:1 +Warning: Failed to retrieve taxon:gm04813 in loop_count:1 +Warning: Failed to retrieve taxon:gm04814 in loop_count:1 +Warning: Failed to retrieve taxon:gm04273 in loop_count:1 +Warning: Failed to retrieve taxon:mib in loop_count:1 +Warning: Failed to retrieve taxon:wba in loop_count:1 +Warning: Failed to retrieve taxon:gm04653 in loop_count:1 +Warning: Failed to retrieve taxon:gm04821 in loop_count:1 +Warning: Failed to retrieve taxon:gm04822 in loop_count:1 +Warning: Failed to retrieve taxon:gm04823 in loop_count:1 +Warning: Failed to retrieve taxon:gm04835 in loop_count:1 +Warning: Failed to retrieve taxon:gm04836 in loop_count:1 +Warning: Failed to retrieve taxon:gm04847 in loop_count:1 +Warning: Failed to retrieve taxon:gm04848 in loop_count:1 +Warning: Failed to retrieve taxon:gm04598 in loop_count:1 +Warning: Failed to retrieve taxon:gm04610 in loop_count:1 +Warning: Failed to retrieve taxon:gm04803 in loop_count:1 +Warning: Failed to retrieve taxon:gm04810 in loop_count:1 +Warning: Failed to retrieve taxon:gm04811 in loop_count:1 +Warning: Failed to retrieve taxon:pcv in loop_count:1 +Warning: Failed to retrieve taxon:mgb in loop_count:1 +Warning: Failed to retrieve taxon:rbu in loop_count:1 +Warning: Failed to retrieve taxon:gm04833 in loop_count:1 +Warning: Failed to retrieve taxon:gm04839 in loop_count:1 +Warning: Failed to retrieve taxon:gm04840 in loop_count:1 +Warning: Failed to retrieve taxon:gm04850 in loop_count:1 +Warning: Failed to retrieve taxon:gm04851 in loop_count:1 +Warning: Failed to retrieve taxon:gm04855 in loop_count:1 +Warning: Failed to retrieve taxon:gm04865 in loop_count:1 +Warning: Failed to retrieve taxon:gm04866 in loop_count:1 +Warning: Failed to retrieve taxon:gm04786 in loop_count:1 +Warning: Failed to retrieve taxon:gm04787 in loop_count:1 +Warning: Failed to retrieve taxon:gm04807 in loop_count:1 +Warning: Failed to retrieve taxon:gm04808 in loop_count:1 +Warning: Failed to retrieve taxon:gm04809 in loop_count:1 +Warning: Failed to retrieve taxon:gm04815 in loop_count:1 +Warning: Failed to retrieve taxon:gm04816 in loop_count:1 +Warning: Failed to retrieve taxon:gm04837 in loop_count:1 +Warning: Failed to retrieve taxon:gm04838 in loop_count:1 +Warning: Failed to retrieve taxon:gm04843 in loop_count:1 +Warning: Failed to retrieve taxon:gm04856 in loop_count:1 +Warning: Failed to retrieve taxon:gm04857 in loop_count:1 +Warning: Failed to retrieve taxon:gm04812 in loop_count:1 +Warning: Failed to retrieve taxon:gm06263 in loop_count:1 +Warning: Failed to retrieve taxon:gm06264 in loop_count:1 +Warning: Failed to retrieve taxon:gm06286 in loop_count:1 +Warning: Failed to retrieve taxon:gm06287 in loop_count:1 +Warning: Failed to retrieve taxon:gm06288 in loop_count:1 +Warning: Failed to retrieve taxon:gm06292 in loop_count:1 +Warning: Failed to retrieve taxon:gm06293 in loop_count:1 +Warning: Failed to retrieve taxon:gm06315 in loop_count:1 +Warning: Failed to retrieve taxon:cgw in loop_count:1 +Warning: Failed to retrieve taxon:pwo in loop_count:1 +Warning: Failed to retrieve taxon:gm04661 in loop_count:1 +Warning: Failed to retrieve taxon:gm04859 in loop_count:1 +Warning: Failed to retrieve taxon:gm04860 in loop_count:1 +Warning: Failed to retrieve taxon:gm04874 in loop_count:1 +Warning: Failed to retrieve taxon:gm04798 in loop_count:1 +Warning: Failed to retrieve taxon:gm04799 in loop_count:1 +Warning: Failed to retrieve taxon:gm04802 in loop_count:1 +Warning: Failed to retrieve taxon:gm05041 in loop_count:1 +Warning: Failed to retrieve taxon:gm04827 in loop_count:1 +Warning: Failed to retrieve taxon:gm04828 in loop_count:1 +Warning: Failed to retrieve taxon:gm04831 in loop_count:1 +Warning: Failed to retrieve taxon:gm04832 in loop_count:1 +Warning: Failed to retrieve taxon:gm04849 in loop_count:1 +Warning: Failed to retrieve taxon:gm04587 in loop_count:1 +Warning: Failed to retrieve taxon:gm04871 in loop_count:1 +Warning: Failed to retrieve taxon:gm04872 in loop_count:1 +Warning: Failed to retrieve taxon:gm04875 in loop_count:1 +Warning: Failed to retrieve taxon:gm04876 in loop_count:1 +Warning: Failed to retrieve taxon:cum in loop_count:1 +Warning: Failed to retrieve taxon:gm06267 in loop_count:1 +Warning: Failed to retrieve taxon:gm06365 in loop_count:1 +Warning: Failed to retrieve taxon:gm06366 in loop_count:1 +Warning: Failed to retrieve taxon:gm06368 in loop_count:1 +Warning: Failed to retrieve taxon:gm06369 in loop_count:1 +Warning: Failed to retrieve taxon:gm06376 in loop_count:1 +Warning: Failed to retrieve taxon:gm06377 in loop_count:1 +Warning: Failed to retrieve taxon:gm06403 in loop_count:1 +Warning: Failed to retrieve taxon:gm04846 in loop_count:1 +Warning: Failed to retrieve taxon:gm04852 in loop_count:1 +Warning: Failed to retrieve taxon:gm04867 in loop_count:1 +Warning: Failed to retrieve taxon:gm04868 in loop_count:1 +Warning: Failed to retrieve taxon:gm04869 in loop_count:1 +Warning: Failed to retrieve taxon:gm04873 in loop_count:1 +Warning: Failed to retrieve taxon:gm04789 in loop_count:1 +Warning: Failed to retrieve taxon:gm04790 in loop_count:1 +Warning: Failed to retrieve taxon:gm04791 in loop_count:1 +Warning: Failed to retrieve taxon:gm06297 in loop_count:1 +Warning: Failed to retrieve taxon:gm06299 in loop_count:1 +Warning: Failed to retrieve taxon:gm04792 in loop_count:1 +Warning: Failed to retrieve taxon:gm04793 in loop_count:1 +Warning: Failed to retrieve taxon:gm04794 in loop_count:1 +Warning: Failed to retrieve taxon:gm04795 in loop_count:1 +Warning: Failed to retrieve taxon:gm04796 in loop_count:1 +Warning: Failed to retrieve taxon:gm04797 in loop_count:1 +Warning: Failed to retrieve taxon:gm05497 in loop_count:1 +Warning: Failed to retrieve taxon:pspg in loop_count:1 +Warning: Failed to retrieve taxon:gm06477 in loop_count:1 +Warning: Failed to retrieve taxon:gm04800 in loop_count:1 +Warning: Failed to retrieve taxon:gm04801 in loop_count:1 +Warning: Failed to retrieve taxon:gm04806 in loop_count:1 +Warning: Failed to retrieve taxon:gm06296 in loop_count:1 +Warning: Failed to retrieve taxon:prf in loop_count:1 +Warning: Failed to retrieve taxon:gm06341 in loop_count:1 +Warning: Failed to retrieve taxon:gm06342 in loop_count:1 +Warning: Failed to retrieve taxon:gm06304 in loop_count:1 +Warning: Failed to retrieve taxon:gm06323 in loop_count:1 +Warning: Failed to retrieve taxon:gm06325 in loop_count:1 +Warning: Failed to retrieve taxon:anm in loop_count:1 +Warning: Failed to retrieve taxon:gm06260 in loop_count:1 +Warning: Failed to retrieve taxon:gm06261 in loop_count:1 +Warning: Failed to retrieve taxon:gm06262 in loop_count:1 +Warning: Failed to retrieve taxon:gm06269 in loop_count:1 +Warning: Failed to retrieve taxon:gm06336 in loop_count:1 +Warning: Failed to retrieve taxon:gm06373 in loop_count:1 +Warning: Failed to retrieve taxon:gm06276 in loop_count:1 +Warning: Failed to retrieve taxon:gm06319 in loop_count:1 +Warning: Failed to retrieve taxon:gm06338 in loop_count:1 +Warning: Failed to retrieve taxon:gm06280 in loop_count:1 +Warning: Failed to retrieve taxon:gm06363 in loop_count:1 +Warning: Failed to retrieve taxon:gm06364 in loop_count:1 +Warning: Failed to retrieve taxon:gm06440 in loop_count:1 +Warning: Failed to retrieve taxon:gm06441 in loop_count:1 +Warning: Failed to retrieve taxon:gm06347 in loop_count:1 +Warning: Failed to retrieve taxon:gao in loop_count:1 +Warning: Failed to retrieve taxon:thx in loop_count:1 +Warning: Failed to retrieve taxon:cop in loop_count:1 +Warning: Failed to retrieve taxon:abd in loop_count:1 +Warning: Failed to retrieve taxon:mtg in loop_count:1 +Warning: Failed to retrieve taxon:mti in loop_count:1 +# Success: output/tsv/mbgd_gene-uniprot.tsv is updated +> 2024-10-18T22:08:10 mbgd_gene-uniprot Rule for TSV (output/tsv/mbgd_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/mbgd_gene-uniprot.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 00:53:40 +0900 +task needed: false +timestamp: 2024-10-18 22:08:10 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for mbgd_organism-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for mbgd_organism-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mbgd_organism-taxonomy.tsv is newer than config/mbgd_organism-taxonomy/config.yaml # File output/tsv/mbgd_organism-taxonomy.tsv has no timestamp file -# File output/tsv/mbgd_organism-taxonomy.tsv is created 4.838519036338137 days ago (will be updated when >5 days) -# => Preserving output/tsv/mbgd_organism-taxonomy.tsv +# File output/tsv/mbgd_organism-taxonomy.tsv is created 11.88505551029 days ago (will be updated when >5 days) +## Update config/mbgd_organism-taxonomy/config.yaml => output/tsv/mbgd_organism-taxonomy.tsv +< 2024-10-18T22:08:10 mbgd_organism-taxonomy +togoid-config config/mbgd_organism-taxonomy update +# Success: output/tsv/mbgd_organism-taxonomy.tsv is updated +> 2024-10-18T22:08:10 mbgd_organism-taxonomy Rule for TSV (output/tsv/mbgd_organism-taxonomy.tsv) ------------------------------ Investigating output/tsv/mbgd_organism-taxonomy.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 00:53:41 +0900 +task needed: false +timestamp: 2024-10-18 22:08:10 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for medgen-hp_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for medgen-hp_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-hp_phenotype.tsv is newer than config/medgen-hp_phenotype/config.yaml # File output/tsv/medgen-hp_phenotype.tsv has no timestamp file -# File output/tsv/medgen-hp_phenotype.tsv is created 4.8385122221025 days ago (will be updated when >5 days) -# => Preserving output/tsv/medgen-hp_phenotype.tsv +# File output/tsv/medgen-hp_phenotype.tsv is created 11.885053671972441 days ago (will be updated when >5 days) +## Update config/medgen-hp_phenotype/config.yaml => output/tsv/medgen-hp_phenotype.tsv +< 2024-10-18T22:08:10 medgen-hp_phenotype +togoid-config config/medgen-hp_phenotype update +# Success: output/tsv/medgen-hp_phenotype.tsv is updated +> 2024-10-18T22:08:11 medgen-hp_phenotype Rule for TSV (output/tsv/medgen-hp_phenotype.tsv) ------------------------------ Investigating output/tsv/medgen-hp_phenotype.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 00:53:41 +0900 +task needed: false +timestamp: 2024-10-18 22:08:11 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for medgen-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for medgen-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-mesh.tsv is newer than config/medgen-mesh/config.yaml # File output/tsv/medgen-mesh.tsv has no timestamp file -# File output/tsv/medgen-mesh.tsv is created 4.838507099945764 days ago (will be updated when >5 days) -# => Preserving output/tsv/medgen-mesh.tsv +# File output/tsv/medgen-mesh.tsv is created 11.885055427260047 days ago (will be updated when >5 days) +## Update config/medgen-mesh/config.yaml => output/tsv/medgen-mesh.tsv +< 2024-10-18T22:08:11 medgen-mesh +togoid-config config/medgen-mesh update +# Success: output/tsv/medgen-mesh.tsv is updated +> 2024-10-18T22:08:11 medgen-mesh Rule for TSV (output/tsv/medgen-mesh.tsv) ------------------------------ Investigating output/tsv/medgen-mesh.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 00:53:42 +0900 +task needed: false +timestamp: 2024-10-18 22:08:11 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for medgen-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for medgen-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-mondo.tsv is newer than config/medgen-mondo/config.yaml # File output/tsv/medgen-mondo.tsv has no timestamp file -# File output/tsv/medgen-mondo.tsv is created 4.838501640069583 days ago (will be updated when >5 days) -# => Preserving output/tsv/medgen-mondo.tsv +# File output/tsv/medgen-mondo.tsv is created 11.885054833116747 days ago (will be updated when >5 days) +## Update config/medgen-mondo/config.yaml => output/tsv/medgen-mondo.tsv +< 2024-10-18T22:08:11 medgen-mondo +togoid-config config/medgen-mondo update +# Success: output/tsv/medgen-mondo.tsv is updated +> 2024-10-18T22:08:12 medgen-mondo Rule for TSV (output/tsv/medgen-mondo.tsv) ------------------------------ Investigating output/tsv/medgen-mondo.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 00:53:42 +0900 +task needed: false +timestamp: 2024-10-18 22:08:12 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for medgen-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for medgen-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-ncbigene.tsv is newer than config/medgen-ncbigene/config.yaml # File output/tsv/medgen-ncbigene.tsv has no timestamp file -# File output/tsv/medgen-ncbigene.tsv is created 4.838496735446609 days ago (will be updated when >5 days) -# => Preserving output/tsv/medgen-ncbigene.tsv +# File output/tsv/medgen-ncbigene.tsv is created 11.88505515654751 days ago (will be updated when >5 days) +## Update config/medgen-ncbigene/config.yaml => output/tsv/medgen-ncbigene.tsv +< 2024-10-18T22:08:12 medgen-ncbigene +togoid-config config/medgen-ncbigene update +# Success: output/tsv/medgen-ncbigene.tsv is updated +> 2024-10-18T22:08:12 medgen-ncbigene Rule for TSV (output/tsv/medgen-ncbigene.tsv) ------------------------------ Investigating output/tsv/medgen-ncbigene.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 00:53:43 +0900 +task needed: false +timestamp: 2024-10-18 22:08:12 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for medgen-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for medgen-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-omim_phenotype.tsv is newer than config/medgen-omim_phenotype/config.yaml # File output/tsv/medgen-omim_phenotype.tsv has no timestamp file -# File output/tsv/medgen-omim_phenotype.tsv is created 4.838491819162014 days ago (will be updated when >5 days) -# => Preserving output/tsv/medgen-omim_phenotype.tsv +# File output/tsv/medgen-omim_phenotype.tsv is created 11.885055395104017 days ago (will be updated when >5 days) +## Update config/medgen-omim_phenotype/config.yaml => output/tsv/medgen-omim_phenotype.tsv +< 2024-10-18T22:08:12 medgen-omim_phenotype +togoid-config config/medgen-omim_phenotype update +# Success: output/tsv/medgen-omim_phenotype.tsv is updated +> 2024-10-18T22:08:12 medgen-omim_phenotype Rule for TSV (output/tsv/medgen-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/medgen-omim_phenotype.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 00:53:43 +0900 +task needed: false +timestamp: 2024-10-18 22:08:12 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for medgen-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for medgen-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/medgen-orphanet_phenotype.tsv is newer than config/medgen-orphanet_phenotype/config.yaml # File output/tsv/medgen-orphanet_phenotype.tsv has no timestamp file -# File output/tsv/medgen-orphanet_phenotype.tsv is created 4.838486902835799 days ago (will be updated when >5 days) -# => Preserving output/tsv/medgen-orphanet_phenotype.tsv +# File output/tsv/medgen-orphanet_phenotype.tsv is created 11.885055628632234 days ago (will be updated when >5 days) +## Update config/medgen-orphanet_phenotype/config.yaml => output/tsv/medgen-orphanet_phenotype.tsv +< 2024-10-18T22:08:12 medgen-orphanet_phenotype +togoid-config config/medgen-orphanet_phenotype update +# Success: output/tsv/medgen-orphanet_phenotype.tsv is updated +> 2024-10-18T22:08:13 medgen-orphanet_phenotype Rule for TSV (output/tsv/medgen-orphanet_phenotype.tsv) ------------------------------ Investigating output/tsv/medgen-orphanet_phenotype.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 00:53:44 +0900 +task needed: false +timestamp: 2024-10-18 22:08:13 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for mgi_gene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-ensembl_gene.tsv is newer than config/mgi_gene-ensembl_gene/config.yaml # File output/tsv/mgi_gene-ensembl_gene.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-ensembl_gene/config.yaml => output/tsv/mgi_gene-ensembl_gene.tsv -< 2024-10-11T21:01:09 mgi_gene-ensembl_gene +< 2024-10-18T22:08:13 mgi_gene-ensembl_gene togoid-config config/mgi_gene-ensembl_gene update # Success: output/tsv/mgi_gene-ensembl_gene.tsv is updated -> 2024-10-11T21:01:09 mgi_gene-ensembl_gene +> 2024-10-18T22:08:13 mgi_gene-ensembl_gene Rule for TSV (output/tsv/mgi_gene-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/mgi_gene-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:01:09 +0900 +timestamp: 2024-10-18 22:08:13 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-10-11 21:01:09 +0900) -latest-prerequisite time: 2024-10-11 21:01:09 +0900 +--prepare:mgi_gene (2024-10-18 22:08:13 +0900) +latest-prerequisite time: 2024-10-18 22:08:13 +0900 ................................ ### Update TSV for mgi_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-hgnc.tsv is newer than config/mgi_gene-hgnc/config.yaml # File output/tsv/mgi_gene-hgnc.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-hgnc/config.yaml => output/tsv/mgi_gene-hgnc.tsv -< 2024-10-11T21:01:09 mgi_gene-hgnc +< 2024-10-18T22:08:13 mgi_gene-hgnc togoid-config config/mgi_gene-hgnc update # Success: output/tsv/mgi_gene-hgnc.tsv is updated -> 2024-10-11T21:01:10 mgi_gene-hgnc +> 2024-10-18T22:08:14 mgi_gene-hgnc Rule for TSV (output/tsv/mgi_gene-hgnc.tsv) ------------------------------ Investigating output/tsv/mgi_gene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:01:10 +0900 +timestamp: 2024-10-18 22:08:14 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-10-11 21:01:10 +0900) -latest-prerequisite time: 2024-10-11 21:01:10 +0900 +--prepare:mgi_gene (2024-10-18 22:08:14 +0900) +latest-prerequisite time: 2024-10-18 22:08:14 +0900 ................................ ### Update TSV for mgi_gene-mgi_allele if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-mgi_allele.tsv is newer than config/mgi_gene-mgi_allele/config.yaml # File output/tsv/mgi_gene-mgi_allele.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-mgi_allele/config.yaml => output/tsv/mgi_gene-mgi_allele.tsv -< 2024-10-11T21:01:10 mgi_gene-mgi_allele +< 2024-10-18T22:08:14 mgi_gene-mgi_allele togoid-config config/mgi_gene-mgi_allele update # Success: output/tsv/mgi_gene-mgi_allele.tsv is updated -> 2024-10-11T21:01:11 mgi_gene-mgi_allele +> 2024-10-18T22:08:15 mgi_gene-mgi_allele Rule for TSV (output/tsv/mgi_gene-mgi_allele.tsv) ------------------------------ Investigating output/tsv/mgi_gene-mgi_allele.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:01:11 +0900 +timestamp: 2024-10-18 22:08:15 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-10-11 21:01:11 +0900) -latest-prerequisite time: 2024-10-11 21:01:11 +0900 +--prepare:mgi_gene (2024-10-18 22:08:15 +0900) +latest-prerequisite time: 2024-10-18 22:08:15 +0900 ................................ ### Update TSV for mgi_gene-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-ncbigene.tsv is newer than config/mgi_gene-ncbigene/config.yaml # File output/tsv/mgi_gene-ncbigene.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-ncbigene/config.yaml => output/tsv/mgi_gene-ncbigene.tsv -< 2024-10-11T21:01:11 mgi_gene-ncbigene +< 2024-10-18T22:08:15 mgi_gene-ncbigene togoid-config config/mgi_gene-ncbigene update # Success: output/tsv/mgi_gene-ncbigene.tsv is updated -> 2024-10-11T21:01:12 mgi_gene-ncbigene +> 2024-10-18T22:08:16 mgi_gene-ncbigene Rule for TSV (output/tsv/mgi_gene-ncbigene.tsv) ------------------------------ Investigating output/tsv/mgi_gene-ncbigene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:01:12 +0900 +timestamp: 2024-10-18 22:08:16 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-10-11 21:01:12 +0900) -latest-prerequisite time: 2024-10-11 21:01:12 +0900 +--prepare:mgi_gene (2024-10-18 22:08:16 +0900) +latest-prerequisite time: 2024-10-18 22:08:16 +0900 ................................ ### Update TSV for mgi_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_gene-uniprot.tsv is newer than config/mgi_gene-uniprot/config.yaml # File output/tsv/mgi_gene-uniprot.tsv is older than input/mgi_gene/download.lock ## Update config/mgi_gene-uniprot/config.yaml => output/tsv/mgi_gene-uniprot.tsv -< 2024-10-11T21:01:12 mgi_gene-uniprot +< 2024-10-18T22:08:16 mgi_gene-uniprot togoid-config config/mgi_gene-uniprot update # Success: output/tsv/mgi_gene-uniprot.tsv is updated -> 2024-10-11T21:01:12 mgi_gene-uniprot +> 2024-10-18T22:08:16 mgi_gene-uniprot Rule for TSV (output/tsv/mgi_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/mgi_gene-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:01:12 +0900 +timestamp: 2024-10-18 22:08:16 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_gene (2024-10-11 21:01:12 +0900) -latest-prerequisite time: 2024-10-11 21:01:12 +0900 +--prepare:mgi_gene (2024-10-18 22:08:16 +0900) +latest-prerequisite time: 2024-10-18 22:08:16 +0900 ................................ ### Update TSV for mgi_genotype-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-doid.tsv is newer than config/mgi_genotype-doid/config.yaml # File output/tsv/mgi_genotype-doid.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-doid/config.yaml => output/tsv/mgi_genotype-doid.tsv -< 2024-10-11T21:01:12 mgi_genotype-doid +< 2024-10-18T22:08:16 mgi_genotype-doid togoid-config config/mgi_genotype-doid update # Success: output/tsv/mgi_genotype-doid.tsv is updated -> 2024-10-11T21:01:14 mgi_genotype-doid +> 2024-10-18T22:08:19 mgi_genotype-doid Rule for TSV (output/tsv/mgi_genotype-doid.tsv) ------------------------------ Investigating output/tsv/mgi_genotype-doid.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:01:14 +0900 +timestamp: 2024-10-18 22:08:19 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_genotype (2024-10-11 21:01:14 +0900) -latest-prerequisite time: 2024-10-11 21:01:14 +0900 +--prepare:mgi_genotype (2024-10-18 22:08:19 +0900) +latest-prerequisite time: 2024-10-18 22:08:19 +0900 ................................ ### Update TSV for mgi_genotype-mgi_allele if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-mgi_allele.tsv is newer than config/mgi_genotype-mgi_allele/config.yaml # File output/tsv/mgi_genotype-mgi_allele.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-mgi_allele/config.yaml => output/tsv/mgi_genotype-mgi_allele.tsv -< 2024-10-11T21:01:14 mgi_genotype-mgi_allele +< 2024-10-18T22:08:19 mgi_genotype-mgi_allele togoid-config config/mgi_genotype-mgi_allele update # Success: output/tsv/mgi_genotype-mgi_allele.tsv is updated -> 2024-10-11T21:01:15 mgi_genotype-mgi_allele +> 2024-10-18T22:08:20 mgi_genotype-mgi_allele Rule for TSV (output/tsv/mgi_genotype-mgi_allele.tsv) ------------------------------ Investigating output/tsv/mgi_genotype-mgi_allele.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:01:15 +0900 +timestamp: 2024-10-18 22:08:20 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_genotype (2024-10-11 21:01:15 +0900) -latest-prerequisite time: 2024-10-11 21:01:15 +0900 +--prepare:mgi_genotype (2024-10-18 22:08:20 +0900) +latest-prerequisite time: 2024-10-18 22:08:20 +0900 ................................ ### Update TSV for mgi_genotype-mp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mgi_genotype-mp.tsv is newer than config/mgi_genotype-mp/config.yaml # File output/tsv/mgi_genotype-mp.tsv is older than input/mgi_genotype/download.lock ## Update config/mgi_genotype-mp/config.yaml => output/tsv/mgi_genotype-mp.tsv -< 2024-10-11T21:01:15 mgi_genotype-mp +< 2024-10-18T22:08:20 mgi_genotype-mp togoid-config config/mgi_genotype-mp update # Success: output/tsv/mgi_genotype-mp.tsv is updated -> 2024-10-11T21:01:18 mgi_genotype-mp +> 2024-10-18T22:08:23 mgi_genotype-mp Rule for TSV (output/tsv/mgi_genotype-mp.tsv) ------------------------------ Investigating output/tsv/mgi_genotype-mp.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:01:18 +0900 +timestamp: 2024-10-18 22:08:23 +0900 pre-requisites: --output/tsv/ () ---prepare:mgi_genotype (2024-10-11 21:01:18 +0900) -latest-prerequisite time: 2024-10-11 21:01:18 +0900 +--prepare:mgi_genotype (2024-10-18 22:08:23 +0900) +latest-prerequisite time: 2024-10-18 22:08:23 +0900 ................................ ### Update TSV for mondo-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-doid.tsv is newer than config/mondo-doid/config.yaml # File output/tsv/mondo-doid.tsv has no timestamp file -# File output/tsv/mondo-doid.tsv is created 139.24483124525716 days ago (will be updated when >5 days) +# File output/tsv/mondo-doid.tsv is created 146.29141763384416 days ago (will be updated when >5 days) ## Update config/mondo-doid/config.yaml => output/tsv/mondo-doid.tsv -< 2024-10-11T21:01:18 mondo-doid +< 2024-10-18T22:08:23 mondo-doid togoid-config config/mondo-doid update # Error: output/tsv/mondo-doid.tsv new file size per old 0 / 155460 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-doid.tsv or created file was empty # Failure: output/tsv/mondo-doid.tsv is not updated -> 2024-10-11T21:01:18 mondo-doid +> 2024-10-18T22:08:23 mondo-doid Rule for TSV (output/tsv/mondo-doid.tsv) ------------------------------ Investigating output/tsv/mondo-doid.tsv @@ -2797,21 +3179,21 @@ task needed: true timestamp: 2024-05-25 15:08:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for mondo-hp_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-hp_phenotype.tsv is newer than config/mondo-hp_phenotype/config.yaml # File output/tsv/mondo-hp_phenotype.tsv has no timestamp file -# File output/tsv/mondo-hp_phenotype.tsv is created 139.2448299750575 days ago (will be updated when >5 days) +# File output/tsv/mondo-hp_phenotype.tsv is created 146.2914164621836 days ago (will be updated when >5 days) ## Update config/mondo-hp_phenotype/config.yaml => output/tsv/mondo-hp_phenotype.tsv -< 2024-10-11T21:01:18 mondo-hp_phenotype +< 2024-10-18T22:08:23 mondo-hp_phenotype togoid-config config/mondo-hp_phenotype update # Error: output/tsv/mondo-hp_phenotype.tsv new file size per old 0 / 9184 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-hp_phenotype.tsv or created file was empty # Failure: output/tsv/mondo-hp_phenotype.tsv is not updated -> 2024-10-11T21:01:19 mondo-hp_phenotype +> 2024-10-18T22:08:24 mondo-hp_phenotype Rule for TSV (output/tsv/mondo-hp_phenotype.tsv) ------------------------------ Investigating output/tsv/mondo-hp_phenotype.tsv @@ -2820,21 +3202,21 @@ task needed: true timestamp: 2024-05-25 15:08:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for mondo-meddra if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-meddra.tsv is newer than config/mondo-meddra/config.yaml # File output/tsv/mondo-meddra.tsv has no timestamp file -# File output/tsv/mondo-meddra.tsv is created 139.24482998455767 days ago (will be updated when >5 days) +# File output/tsv/mondo-meddra.tsv is created 146.2914212964225 days ago (will be updated when >5 days) ## Update config/mondo-meddra/config.yaml => output/tsv/mondo-meddra.tsv -< 2024-10-11T21:01:19 mondo-meddra +< 2024-10-18T22:08:24 mondo-meddra togoid-config config/mondo-meddra update # Error: output/tsv/mondo-meddra.tsv new file size per old 0 / 25262 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-meddra.tsv or created file was empty # Failure: output/tsv/mondo-meddra.tsv is not updated -> 2024-10-11T21:01:19 mondo-meddra +> 2024-10-18T22:08:25 mondo-meddra Rule for TSV (output/tsv/mondo-meddra.tsv) ------------------------------ Investigating output/tsv/mondo-meddra.tsv @@ -2843,21 +3225,21 @@ task needed: true timestamp: 2024-05-25 15:08:45 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for mondo-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-mesh.tsv is newer than config/mondo-mesh/config.yaml # File output/tsv/mondo-mesh.tsv has no timestamp file -# File output/tsv/mondo-mesh.tsv is created 139.24482868577357 days ago (will be updated when >5 days) +# File output/tsv/mondo-mesh.tsv is created 146.29142441259552 days ago (will be updated when >5 days) ## Update config/mondo-mesh/config.yaml => output/tsv/mondo-mesh.tsv -< 2024-10-11T21:01:19 mondo-mesh +< 2024-10-18T22:08:25 mondo-mesh togoid-config config/mondo-mesh update # Error: output/tsv/mondo-mesh.tsv new file size per old 0 / 133836 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-mesh.tsv or created file was empty # Failure: output/tsv/mondo-mesh.tsv is not updated -> 2024-10-11T21:01:19 mondo-mesh +> 2024-10-18T22:08:25 mondo-mesh Rule for TSV (output/tsv/mondo-mesh.tsv) ------------------------------ Investigating output/tsv/mondo-mesh.tsv @@ -2866,21 +3248,21 @@ task needed: true timestamp: 2024-05-25 15:08:46 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for mondo-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-omim_phenotype.tsv is newer than config/mondo-omim_phenotype/config.yaml # File output/tsv/mondo-omim_phenotype.tsv has no timestamp file -# File output/tsv/mondo-omim_phenotype.tsv is created 139.24482874595859 days ago (will be updated when >5 days) +# File output/tsv/mondo-omim_phenotype.tsv is created 146.29142497825674 days ago (will be updated when >5 days) ## Update config/mondo-omim_phenotype/config.yaml => output/tsv/mondo-omim_phenotype.tsv -< 2024-10-11T21:01:19 mondo-omim_phenotype +< 2024-10-18T22:08:25 mondo-omim_phenotype togoid-config config/mondo-omim_phenotype update # Error: output/tsv/mondo-omim_phenotype.tsv new file size per old 0 / 145395 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-omim_phenotype.tsv or created file was empty # Failure: output/tsv/mondo-omim_phenotype.tsv is not updated -> 2024-10-11T21:01:20 mondo-omim_phenotype +> 2024-10-18T22:08:26 mondo-omim_phenotype Rule for TSV (output/tsv/mondo-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/mondo-omim_phenotype.tsv @@ -2889,21 +3271,21 @@ task needed: true timestamp: 2024-05-25 15:08:46 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for mondo-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/mondo-orphanet_phenotype.tsv is newer than config/mondo-orphanet_phenotype/config.yaml # File output/tsv/mondo-orphanet_phenotype.tsv has no timestamp file -# File output/tsv/mondo-orphanet_phenotype.tsv is created 139.24482861053863 days ago (will be updated when >5 days) +# File output/tsv/mondo-orphanet_phenotype.tsv is created 146.29142845961232 days ago (will be updated when >5 days) ## Update config/mondo-orphanet_phenotype/config.yaml => output/tsv/mondo-orphanet_phenotype.tsv -< 2024-10-11T21:01:20 mondo-orphanet_phenotype +< 2024-10-18T22:08:26 mondo-orphanet_phenotype togoid-config config/mondo-orphanet_phenotype update # Error: output/tsv/mondo-orphanet_phenotype.tsv new file size per old 0 / 146923 = 0.0 < 0.5 # Error: Failed to create output/tsv/mondo-orphanet_phenotype.tsv or created file was empty # Failure: output/tsv/mondo-orphanet_phenotype.tsv is not updated -> 2024-10-11T21:01:20 mondo-orphanet_phenotype +> 2024-10-18T22:08:27 mondo-orphanet_phenotype Rule for TSV (output/tsv/mondo-orphanet_phenotype.tsv) ------------------------------ Investigating output/tsv/mondo-orphanet_phenotype.tsv @@ -2912,442 +3294,450 @@ task needed: true timestamp: 2024-05-25 15:08:47 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for nando-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for nando-mondo if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/nando-mondo.tsv is newer than config/nando-mondo/config.yaml # File output/tsv/nando-mondo.tsv has no timestamp file -# File output/tsv/nando-mondo.tsv is created 4.838436437414178 days ago (will be updated when >5 days) -# => Preserving output/tsv/nando-mondo.tsv +# File output/tsv/nando-mondo.tsv is created 11.885036994568715 days ago (will be updated when >5 days) +## Update config/nando-mondo/config.yaml => output/tsv/nando-mondo.tsv +< 2024-10-18T22:08:27 nando-mondo +togoid-config config/nando-mondo update +# Success: output/tsv/nando-mondo.tsv is updated +> 2024-10-18T22:08:27 nando-mondo Rule for TSV (output/tsv/nando-mondo.tsv) ------------------------------ Investigating output/tsv/nando-mondo.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 00:53:59 +0900 +task needed: false +timestamp: 2024-10-18 22:08:27 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for ncbigene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_gene.tsv is newer than config/ncbigene-ensembl_gene/config.yaml # File output/tsv/ncbigene-ensembl_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_gene/config.yaml => output/tsv/ncbigene-ensembl_gene.tsv -< 2024-10-11T21:01:20 ncbigene-ensembl_gene +< 2024-10-18T22:08:27 ncbigene-ensembl_gene togoid-config config/ncbigene-ensembl_gene update # Success: output/tsv/ncbigene-ensembl_gene.tsv is updated -> 2024-10-11T21:01:59 ncbigene-ensembl_gene +> 2024-10-18T22:09:08 ncbigene-ensembl_gene Rule for TSV (output/tsv/ncbigene-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-ensembl_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:01:59 +0900 +timestamp: 2024-10-18 22:09:08 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:01:59 +0900) -latest-prerequisite time: 2024-10-11 21:01:59 +0900 +--prepare:ncbigene (2024-10-18 22:09:08 +0900) +latest-prerequisite time: 2024-10-18 22:09:08 +0900 ................................ ### Update TSV for ncbigene-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_protein.tsv is newer than config/ncbigene-ensembl_protein/config.yaml # File output/tsv/ncbigene-ensembl_protein.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_protein/config.yaml => output/tsv/ncbigene-ensembl_protein.tsv -< 2024-10-11T21:01:59 ncbigene-ensembl_protein +< 2024-10-18T22:09:08 ncbigene-ensembl_protein togoid-config config/ncbigene-ensembl_protein update # Success: output/tsv/ncbigene-ensembl_protein.tsv is updated -> 2024-10-11T21:03:12 ncbigene-ensembl_protein +> 2024-10-18T22:10:18 ncbigene-ensembl_protein Rule for TSV (output/tsv/ncbigene-ensembl_protein.tsv) ------------------------------ Investigating output/tsv/ncbigene-ensembl_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:03:12 +0900 +timestamp: 2024-10-18 22:10:18 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:03:12 +0900) -latest-prerequisite time: 2024-10-11 21:03:12 +0900 +--prepare:ncbigene (2024-10-18 22:10:18 +0900) +latest-prerequisite time: 2024-10-18 22:10:18 +0900 ................................ ### Update TSV for ncbigene-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-ensembl_transcript.tsv is newer than config/ncbigene-ensembl_transcript/config.yaml # File output/tsv/ncbigene-ensembl_transcript.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-ensembl_transcript/config.yaml => output/tsv/ncbigene-ensembl_transcript.tsv -< 2024-10-11T21:03:12 ncbigene-ensembl_transcript +< 2024-10-18T22:10:18 ncbigene-ensembl_transcript togoid-config config/ncbigene-ensembl_transcript update # Success: output/tsv/ncbigene-ensembl_transcript.tsv is updated -> 2024-10-11T21:04:19 ncbigene-ensembl_transcript +> 2024-10-18T22:11:32 ncbigene-ensembl_transcript Rule for TSV (output/tsv/ncbigene-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/ncbigene-ensembl_transcript.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:04:19 +0900 +timestamp: 2024-10-18 22:11:32 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:04:19 +0900) -latest-prerequisite time: 2024-10-11 21:04:19 +0900 +--prepare:ncbigene (2024-10-18 22:11:32 +0900) +latest-prerequisite time: 2024-10-18 22:11:32 +0900 ................................ ### Update TSV for ncbigene-flybase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-flybase_gene.tsv is newer than config/ncbigene-flybase_gene/config.yaml # File output/tsv/ncbigene-flybase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-flybase_gene/config.yaml => output/tsv/ncbigene-flybase_gene.tsv -< 2024-10-11T21:04:19 ncbigene-flybase_gene +< 2024-10-18T22:11:32 ncbigene-flybase_gene togoid-config config/ncbigene-flybase_gene update # Success: output/tsv/ncbigene-flybase_gene.tsv is updated -> 2024-10-11T21:05:56 ncbigene-flybase_gene +> 2024-10-18T22:13:04 ncbigene-flybase_gene Rule for TSV (output/tsv/ncbigene-flybase_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-flybase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:05:56 +0900 +timestamp: 2024-10-18 22:13:04 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:05:56 +0900) -latest-prerequisite time: 2024-10-11 21:05:56 +0900 +--prepare:ncbigene (2024-10-18 22:13:04 +0900) +latest-prerequisite time: 2024-10-18 22:13:04 +0900 ................................ ### Update TSV for ncbigene-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-go.tsv is newer than config/ncbigene-go/config.yaml # File output/tsv/ncbigene-go.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-go/config.yaml => output/tsv/ncbigene-go.tsv -< 2024-10-11T21:05:56 ncbigene-go +< 2024-10-18T22:13:04 ncbigene-go togoid-config config/ncbigene-go update # Success: output/tsv/ncbigene-go.tsv is updated -> 2024-10-11T21:11:40 ncbigene-go +> 2024-10-18T22:19:20 ncbigene-go Rule for TSV (output/tsv/ncbigene-go.tsv) ------------------------------ Investigating output/tsv/ncbigene-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:11:40 +0900 +timestamp: 2024-10-18 22:19:20 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:11:40 +0900) -latest-prerequisite time: 2024-10-11 21:11:40 +0900 +--prepare:ncbigene (2024-10-18 22:19:20 +0900) +latest-prerequisite time: 2024-10-18 22:19:20 +0900 ................................ ### Update TSV for ncbigene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-hgnc.tsv is newer than config/ncbigene-hgnc/config.yaml # File output/tsv/ncbigene-hgnc.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-hgnc/config.yaml => output/tsv/ncbigene-hgnc.tsv -< 2024-10-11T21:11:40 ncbigene-hgnc +< 2024-10-18T22:19:20 ncbigene-hgnc togoid-config config/ncbigene-hgnc update # Success: output/tsv/ncbigene-hgnc.tsv is updated -> 2024-10-11T21:11:41 ncbigene-hgnc +> 2024-10-18T22:19:21 ncbigene-hgnc Rule for TSV (output/tsv/ncbigene-hgnc.tsv) ------------------------------ Investigating output/tsv/ncbigene-hgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:11:41 +0900 +timestamp: 2024-10-18 22:19:21 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:11:41 +0900) -latest-prerequisite time: 2024-10-11 21:11:41 +0900 +--prepare:ncbigene (2024-10-18 22:19:21 +0900) +latest-prerequisite time: 2024-10-18 22:19:21 +0900 ................................ ### Update TSV for ncbigene-mgi_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-mgi_gene.tsv is newer than config/ncbigene-mgi_gene/config.yaml # File output/tsv/ncbigene-mgi_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-mgi_gene/config.yaml => output/tsv/ncbigene-mgi_gene.tsv -< 2024-10-11T21:11:41 ncbigene-mgi_gene +< 2024-10-18T22:19:21 ncbigene-mgi_gene togoid-config config/ncbigene-mgi_gene update # Success: output/tsv/ncbigene-mgi_gene.tsv is updated -> 2024-10-11T21:12:49 ncbigene-mgi_gene +> 2024-10-18T22:20:29 ncbigene-mgi_gene Rule for TSV (output/tsv/ncbigene-mgi_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-mgi_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:12:49 +0900 +timestamp: 2024-10-18 22:20:29 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:12:49 +0900) -latest-prerequisite time: 2024-10-11 21:12:49 +0900 +--prepare:ncbigene (2024-10-18 22:20:29 +0900) +latest-prerequisite time: 2024-10-18 22:20:29 +0900 ................................ ### Update TSV for ncbigene-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-mirbase.tsv is newer than config/ncbigene-mirbase/config.yaml # File output/tsv/ncbigene-mirbase.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-mirbase/config.yaml => output/tsv/ncbigene-mirbase.tsv -< 2024-10-11T21:12:49 ncbigene-mirbase +< 2024-10-18T22:20:29 ncbigene-mirbase togoid-config config/ncbigene-mirbase update # Success: output/tsv/ncbigene-mirbase.tsv is updated -> 2024-10-11T21:14:40 ncbigene-mirbase +> 2024-10-18T22:22:22 ncbigene-mirbase Rule for TSV (output/tsv/ncbigene-mirbase.tsv) ------------------------------ Investigating output/tsv/ncbigene-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:14:40 +0900 +timestamp: 2024-10-18 22:22:22 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:14:40 +0900) -latest-prerequisite time: 2024-10-11 21:14:40 +0900 +--prepare:ncbigene (2024-10-18 22:22:22 +0900) +latest-prerequisite time: 2024-10-18 22:22:22 +0900 ................................ ### Update TSV for ncbigene-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-omim_gene.tsv is newer than config/ncbigene-omim_gene/config.yaml # File output/tsv/ncbigene-omim_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-omim_gene/config.yaml => output/tsv/ncbigene-omim_gene.tsv -< 2024-10-11T21:14:40 ncbigene-omim_gene +< 2024-10-18T22:22:22 ncbigene-omim_gene togoid-config config/ncbigene-omim_gene update # Success: output/tsv/ncbigene-omim_gene.tsv is updated -> 2024-10-11T21:14:41 ncbigene-omim_gene +> 2024-10-18T22:22:23 ncbigene-omim_gene Rule for TSV (output/tsv/ncbigene-omim_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-omim_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:14:41 +0900 +timestamp: 2024-10-18 22:22:23 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:14:41 +0900) -latest-prerequisite time: 2024-10-11 21:14:41 +0900 +--prepare:ncbigene (2024-10-18 22:22:23 +0900) +latest-prerequisite time: 2024-10-18 22:22:23 +0900 ................................ ### Update TSV for ncbigene-refseq_genomic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_genomic.tsv is newer than config/ncbigene-refseq_genomic/config.yaml # File output/tsv/ncbigene-refseq_genomic.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_genomic/config.yaml => output/tsv/ncbigene-refseq_genomic.tsv -< 2024-10-11T21:14:41 ncbigene-refseq_genomic +< 2024-10-18T22:22:23 ncbigene-refseq_genomic togoid-config config/ncbigene-refseq_genomic update # Success: output/tsv/ncbigene-refseq_genomic.tsv is updated -> 2024-10-11T21:18:57 ncbigene-refseq_genomic +> 2024-10-18T22:27:11 ncbigene-refseq_genomic Rule for TSV (output/tsv/ncbigene-refseq_genomic.tsv) ------------------------------ Investigating output/tsv/ncbigene-refseq_genomic.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:18:57 +0900 +timestamp: 2024-10-18 22:27:11 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:18:57 +0900) -latest-prerequisite time: 2024-10-11 21:18:57 +0900 +--prepare:ncbigene (2024-10-18 22:27:11 +0900) +latest-prerequisite time: 2024-10-18 22:27:11 +0900 ................................ ### Update TSV for ncbigene-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_protein.tsv is newer than config/ncbigene-refseq_protein/config.yaml # File output/tsv/ncbigene-refseq_protein.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_protein/config.yaml => output/tsv/ncbigene-refseq_protein.tsv -< 2024-10-11T21:18:57 ncbigene-refseq_protein +< 2024-10-18T22:27:11 ncbigene-refseq_protein togoid-config config/ncbigene-refseq_protein update # Success: output/tsv/ncbigene-refseq_protein.tsv is updated -> 2024-10-11T21:23:31 ncbigene-refseq_protein +> 2024-10-18T22:32:02 ncbigene-refseq_protein Rule for TSV (output/tsv/ncbigene-refseq_protein.tsv) ------------------------------ Investigating output/tsv/ncbigene-refseq_protein.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:23:31 +0900 +timestamp: 2024-10-18 22:32:01 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:23:31 +0900) -latest-prerequisite time: 2024-10-11 21:23:31 +0900 +--prepare:ncbigene (2024-10-18 22:32:02 +0900) +latest-prerequisite time: 2024-10-18 22:32:02 +0900 ................................ ### Update TSV for ncbigene-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-refseq_rna.tsv is newer than config/ncbigene-refseq_rna/config.yaml # File output/tsv/ncbigene-refseq_rna.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-refseq_rna/config.yaml => output/tsv/ncbigene-refseq_rna.tsv -< 2024-10-11T21:23:31 ncbigene-refseq_rna +< 2024-10-18T22:32:02 ncbigene-refseq_rna togoid-config config/ncbigene-refseq_rna update # Success: output/tsv/ncbigene-refseq_rna.tsv is updated -> 2024-10-11T21:27:47 ncbigene-refseq_rna +> 2024-10-18T22:36:20 ncbigene-refseq_rna Rule for TSV (output/tsv/ncbigene-refseq_rna.tsv) ------------------------------ Investigating output/tsv/ncbigene-refseq_rna.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:27:47 +0900 +timestamp: 2024-10-18 22:36:20 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:27:47 +0900) -latest-prerequisite time: 2024-10-11 21:27:47 +0900 +--prepare:ncbigene (2024-10-18 22:36:20 +0900) +latest-prerequisite time: 2024-10-18 22:36:20 +0900 ................................ ### Update TSV for ncbigene-rgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-rgd.tsv is newer than config/ncbigene-rgd/config.yaml # File output/tsv/ncbigene-rgd.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-rgd/config.yaml => output/tsv/ncbigene-rgd.tsv -< 2024-10-11T21:27:47 ncbigene-rgd +< 2024-10-18T22:36:20 ncbigene-rgd togoid-config config/ncbigene-rgd update # Success: output/tsv/ncbigene-rgd.tsv is updated -> 2024-10-11T21:28:53 ncbigene-rgd +> 2024-10-18T22:37:27 ncbigene-rgd Rule for TSV (output/tsv/ncbigene-rgd.tsv) ------------------------------ Investigating output/tsv/ncbigene-rgd.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:28:53 +0900 +timestamp: 2024-10-18 22:37:27 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:28:53 +0900) -latest-prerequisite time: 2024-10-11 21:28:53 +0900 +--prepare:ncbigene (2024-10-18 22:37:27 +0900) +latest-prerequisite time: 2024-10-18 22:37:27 +0900 ................................ ### Update TSV for ncbigene-sgd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-sgd.tsv is newer than config/ncbigene-sgd/config.yaml # File output/tsv/ncbigene-sgd.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-sgd/config.yaml => output/tsv/ncbigene-sgd.tsv -< 2024-10-11T21:28:53 ncbigene-sgd +< 2024-10-18T22:37:27 ncbigene-sgd togoid-config config/ncbigene-sgd update # Success: output/tsv/ncbigene-sgd.tsv is updated -> 2024-10-11T21:30:09 ncbigene-sgd +> 2024-10-18T22:38:44 ncbigene-sgd Rule for TSV (output/tsv/ncbigene-sgd.tsv) ------------------------------ Investigating output/tsv/ncbigene-sgd.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:30:09 +0900 +timestamp: 2024-10-18 22:38:44 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:30:09 +0900) -latest-prerequisite time: 2024-10-11 21:30:09 +0900 +--prepare:ncbigene (2024-10-18 22:38:44 +0900) +latest-prerequisite time: 2024-10-18 22:38:44 +0900 ................................ ### Update TSV for ncbigene-tair if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-tair.tsv is newer than config/ncbigene-tair/config.yaml # File output/tsv/ncbigene-tair.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-tair/config.yaml => output/tsv/ncbigene-tair.tsv -< 2024-10-11T21:30:09 ncbigene-tair +< 2024-10-18T22:38:44 ncbigene-tair togoid-config config/ncbigene-tair update # Success: output/tsv/ncbigene-tair.tsv is updated -> 2024-10-11T21:31:25 ncbigene-tair +> 2024-10-18T22:40:02 ncbigene-tair Rule for TSV (output/tsv/ncbigene-tair.tsv) ------------------------------ Investigating output/tsv/ncbigene-tair.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:31:25 +0900 +timestamp: 2024-10-18 22:40:02 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:31:25 +0900) -latest-prerequisite time: 2024-10-11 21:31:25 +0900 +--prepare:ncbigene (2024-10-18 22:40:02 +0900) +latest-prerequisite time: 2024-10-18 22:40:02 +0900 ................................ ### Update TSV for ncbigene-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-taxonomy.tsv is newer than config/ncbigene-taxonomy/config.yaml # File output/tsv/ncbigene-taxonomy.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-taxonomy/config.yaml => output/tsv/ncbigene-taxonomy.tsv -< 2024-10-11T21:31:25 ncbigene-taxonomy +< 2024-10-18T22:40:02 ncbigene-taxonomy togoid-config config/ncbigene-taxonomy update # Success: output/tsv/ncbigene-taxonomy.tsv is updated -> 2024-10-11T21:32:17 ncbigene-taxonomy +> 2024-10-18T22:40:50 ncbigene-taxonomy Rule for TSV (output/tsv/ncbigene-taxonomy.tsv) ------------------------------ Investigating output/tsv/ncbigene-taxonomy.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:32:17 +0900 +timestamp: 2024-10-18 22:40:50 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:32:17 +0900) -latest-prerequisite time: 2024-10-11 21:32:17 +0900 +--prepare:ncbigene (2024-10-18 22:40:50 +0900) +latest-prerequisite time: 2024-10-18 22:40:50 +0900 ................................ ### Update TSV for ncbigene-vgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-vgnc.tsv is newer than config/ncbigene-vgnc/config.yaml # File output/tsv/ncbigene-vgnc.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-vgnc/config.yaml => output/tsv/ncbigene-vgnc.tsv -< 2024-10-11T21:32:17 ncbigene-vgnc +< 2024-10-18T22:40:50 ncbigene-vgnc togoid-config config/ncbigene-vgnc update # Success: output/tsv/ncbigene-vgnc.tsv is updated -> 2024-10-11T21:33:33 ncbigene-vgnc +> 2024-10-18T22:42:11 ncbigene-vgnc Rule for TSV (output/tsv/ncbigene-vgnc.tsv) ------------------------------ Investigating output/tsv/ncbigene-vgnc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:33:33 +0900 +timestamp: 2024-10-18 22:42:11 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:33:33 +0900) -latest-prerequisite time: 2024-10-11 21:33:33 +0900 +--prepare:ncbigene (2024-10-18 22:42:11 +0900) +latest-prerequisite time: 2024-10-18 22:42:11 +0900 ................................ ### Update TSV for ncbigene-wormbase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-wormbase_gene.tsv is newer than config/ncbigene-wormbase_gene/config.yaml # File output/tsv/ncbigene-wormbase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-wormbase_gene/config.yaml => output/tsv/ncbigene-wormbase_gene.tsv -< 2024-10-11T21:33:33 ncbigene-wormbase_gene +< 2024-10-18T22:42:11 ncbigene-wormbase_gene togoid-config config/ncbigene-wormbase_gene update # Success: output/tsv/ncbigene-wormbase_gene.tsv is updated -> 2024-10-11T21:34:50 ncbigene-wormbase_gene +> 2024-10-18T22:43:28 ncbigene-wormbase_gene Rule for TSV (output/tsv/ncbigene-wormbase_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-wormbase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:34:50 +0900 +timestamp: 2024-10-18 22:43:28 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:34:50 +0900) -latest-prerequisite time: 2024-10-11 21:34:50 +0900 +--prepare:ncbigene (2024-10-18 22:43:28 +0900) +latest-prerequisite time: 2024-10-18 22:43:28 +0900 ................................ ### Update TSV for ncbigene-xenbase_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-xenbase_gene.tsv is newer than config/ncbigene-xenbase_gene/config.yaml # File output/tsv/ncbigene-xenbase_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-xenbase_gene/config.yaml => output/tsv/ncbigene-xenbase_gene.tsv -< 2024-10-11T21:34:50 ncbigene-xenbase_gene +< 2024-10-18T22:43:28 ncbigene-xenbase_gene togoid-config config/ncbigene-xenbase_gene update # Success: output/tsv/ncbigene-xenbase_gene.tsv is updated -> 2024-10-11T21:36:07 ncbigene-xenbase_gene +> 2024-10-18T22:44:45 ncbigene-xenbase_gene Rule for TSV (output/tsv/ncbigene-xenbase_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-xenbase_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:36:07 +0900 +timestamp: 2024-10-18 22:44:45 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:36:07 +0900) -latest-prerequisite time: 2024-10-11 21:36:07 +0900 +--prepare:ncbigene (2024-10-18 22:44:45 +0900) +latest-prerequisite time: 2024-10-18 22:44:45 +0900 ................................ ### Update TSV for ncbigene-zfin_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncbigene-zfin_gene.tsv is newer than config/ncbigene-zfin_gene/config.yaml # File output/tsv/ncbigene-zfin_gene.tsv is older than input/ncbigene/download.lock ## Update config/ncbigene-zfin_gene/config.yaml => output/tsv/ncbigene-zfin_gene.tsv -< 2024-10-11T21:36:07 ncbigene-zfin_gene +< 2024-10-18T22:44:45 ncbigene-zfin_gene togoid-config config/ncbigene-zfin_gene update # Success: output/tsv/ncbigene-zfin_gene.tsv is updated -> 2024-10-11T21:37:24 ncbigene-zfin_gene +> 2024-10-18T22:46:02 ncbigene-zfin_gene Rule for TSV (output/tsv/ncbigene-zfin_gene.tsv) ------------------------------ Investigating output/tsv/ncbigene-zfin_gene.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:37:24 +0900 +timestamp: 2024-10-18 22:46:02 +0900 pre-requisites: --output/tsv/ () ---prepare:ncbigene (2024-10-11 21:37:24 +0900) -latest-prerequisite time: 2024-10-11 21:37:24 +0900 +--prepare:ncbigene (2024-10-18 22:46:02 +0900) +latest-prerequisite time: 2024-10-18 22:46:02 +0900 ................................ -### Update TSV for ncit_disease-ncit_tissue if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for ncit_disease-ncit_tissue if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/ncit_disease-ncit_tissue.tsv is newer than config/ncit_disease-ncit_tissue/config.yaml # File output/tsv/ncit_disease-ncit_tissue.tsv has no timestamp file -# File output/tsv/ncit_disease-ncit_tissue.tsv is created 4.837251438123796 days ago (will be updated when >5 days) -# => Preserving output/tsv/ncit_disease-ncit_tissue.tsv +# File output/tsv/ncit_disease-ncit_tissue.tsv is created 11.884911534781585 days ago (will be updated when >5 days) +## Update config/ncit_disease-ncit_tissue/config.yaml => output/tsv/ncit_disease-ncit_tissue.tsv +< 2024-10-18T22:46:02 ncit_disease-ncit_tissue +togoid-config config/ncit_disease-ncit_tissue update +# Success: output/tsv/ncit_disease-ncit_tissue.tsv is updated +> 2024-10-18T22:46:05 ncit_disease-ncit_tissue Rule for TSV (output/tsv/ncit_disease-ncit_tissue.tsv) ------------------------------ Investigating output/tsv/ncit_disease-ncit_tissue.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:31:45 +0900 +task needed: false +timestamp: 2024-10-18 22:46:05 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for oma_protein-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3362,8 +3752,8 @@ task needed: true timestamp: 2024-09-27 22:31:53 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-10-11 21:37:24 +0900) -latest-prerequisite time: 2024-10-11 21:37:24 +0900 +--prepare:oma_protein (2024-10-18 22:46:05 +0900) +latest-prerequisite time: 2024-10-18 22:46:05 +0900 ................................ ### Update TSV for oma_protein-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3378,8 +3768,8 @@ task needed: true timestamp: 2024-09-27 22:39:06 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-10-11 21:37:24 +0900) -latest-prerequisite time: 2024-10-11 21:37:24 +0900 +--prepare:oma_protein (2024-10-18 22:46:05 +0900) +latest-prerequisite time: 2024-10-18 22:46:05 +0900 ................................ ### Update TSV for oma_protein-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3394,8 +3784,8 @@ task needed: true timestamp: 2024-09-27 22:39:32 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-10-11 21:37:24 +0900) -latest-prerequisite time: 2024-10-11 21:37:24 +0900 +--prepare:oma_protein (2024-10-18 22:46:05 +0900) +latest-prerequisite time: 2024-10-18 22:46:05 +0900 ................................ ### Update TSV for oma_protein-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3410,249 +3800,301 @@ task needed: true timestamp: 2024-09-27 22:39:39 +0900 pre-requisites: --output/tsv/ () ---prepare:oma_protein (2024-10-11 21:37:24 +0900) -latest-prerequisite time: 2024-10-11 21:37:24 +0900 +--prepare:oma_protein (2024-10-18 22:46:05 +0900) +latest-prerequisite time: 2024-10-18 22:46:05 +0900 ................................ -### Update TSV for orphanet_gene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for orphanet_gene-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-ensembl_gene.tsv is newer than config/orphanet_gene-ensembl_gene/config.yaml # File output/tsv/orphanet_gene-ensembl_gene.tsv has no timestamp file -# File output/tsv/orphanet_gene-ensembl_gene.tsv is created 4.837245883888009 days ago (will be updated when >5 days) -# => Preserving output/tsv/orphanet_gene-ensembl_gene.tsv +# File output/tsv/orphanet_gene-ensembl_gene.tsv is created 11.884937369648611 days ago (will be updated when >5 days) +## Update config/orphanet_gene-ensembl_gene/config.yaml => output/tsv/orphanet_gene-ensembl_gene.tsv +< 2024-10-18T22:46:05 orphanet_gene-ensembl_gene +togoid-config config/orphanet_gene-ensembl_gene update +# Success: output/tsv/orphanet_gene-ensembl_gene.tsv is updated +> 2024-10-18T22:46:05 orphanet_gene-ensembl_gene Rule for TSV (output/tsv/orphanet_gene-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-ensembl_gene.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:31:46 +0900 +task needed: false +timestamp: 2024-10-18 22:46:05 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for orphanet_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for orphanet_gene-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-hgnc.tsv is newer than config/orphanet_gene-hgnc/config.yaml # File output/tsv/orphanet_gene-hgnc.tsv has no timestamp file -# File output/tsv/orphanet_gene-hgnc.tsv is created 4.837240866202349 days ago (will be updated when >5 days) -# => Preserving output/tsv/orphanet_gene-hgnc.tsv +# File output/tsv/orphanet_gene-hgnc.tsv is created 11.884936961684156 days ago (will be updated when >5 days) +## Update config/orphanet_gene-hgnc/config.yaml => output/tsv/orphanet_gene-hgnc.tsv +< 2024-10-18T22:46:05 orphanet_gene-hgnc +togoid-config config/orphanet_gene-hgnc update +# Success: output/tsv/orphanet_gene-hgnc.tsv is updated +> 2024-10-18T22:46:05 orphanet_gene-hgnc Rule for TSV (output/tsv/orphanet_gene-hgnc.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-hgnc.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:31:46 +0900 +task needed: false +timestamp: 2024-10-18 22:46:05 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for orphanet_gene-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for orphanet_gene-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-omim_gene.tsv is newer than config/orphanet_gene-omim_gene/config.yaml # File output/tsv/orphanet_gene-omim_gene.tsv has no timestamp file -# File output/tsv/orphanet_gene-omim_gene.tsv is created 4.837236079663183 days ago (will be updated when >5 days) -# => Preserving output/tsv/orphanet_gene-omim_gene.tsv +# File output/tsv/orphanet_gene-omim_gene.tsv is created 11.884936753937454 days ago (will be updated when >5 days) +## Update config/orphanet_gene-omim_gene/config.yaml => output/tsv/orphanet_gene-omim_gene.tsv +< 2024-10-18T22:46:05 orphanet_gene-omim_gene +togoid-config config/orphanet_gene-omim_gene update +# Success: output/tsv/orphanet_gene-omim_gene.tsv is updated +> 2024-10-18T22:46:06 orphanet_gene-omim_gene Rule for TSV (output/tsv/orphanet_gene-omim_gene.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-omim_gene.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:31:47 +0900 +task needed: false +timestamp: 2024-10-18 22:46:06 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for orphanet_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for orphanet_gene-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_gene-uniprot.tsv is newer than config/orphanet_gene-uniprot/config.yaml # File output/tsv/orphanet_gene-uniprot.tsv has no timestamp file -# File output/tsv/orphanet_gene-uniprot.tsv is created 4.83723128176581 days ago (will be updated when >5 days) -# => Preserving output/tsv/orphanet_gene-uniprot.tsv +# File output/tsv/orphanet_gene-uniprot.tsv is created 11.884936863664212 days ago (will be updated when >5 days) +## Update config/orphanet_gene-uniprot/config.yaml => output/tsv/orphanet_gene-uniprot.tsv +< 2024-10-18T22:46:06 orphanet_gene-uniprot +togoid-config config/orphanet_gene-uniprot update +# Success: output/tsv/orphanet_gene-uniprot.tsv is updated +> 2024-10-18T22:46:06 orphanet_gene-uniprot Rule for TSV (output/tsv/orphanet_gene-uniprot.tsv) ------------------------------ Investigating output/tsv/orphanet_gene-uniprot.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:31:47 +0900 +task needed: false +timestamp: 2024-10-18 22:46:06 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for orphanet_phenotype-meddra if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for orphanet_phenotype-meddra if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-meddra.tsv is newer than config/orphanet_phenotype-meddra/config.yaml # File output/tsv/orphanet_phenotype-meddra.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-meddra.tsv is created 4.837226576316655 days ago (will be updated when >5 days) -# => Preserving output/tsv/orphanet_phenotype-meddra.tsv +# File output/tsv/orphanet_phenotype-meddra.tsv is created 11.88493642700669 days ago (will be updated when >5 days) +## Update config/orphanet_phenotype-meddra/config.yaml => output/tsv/orphanet_phenotype-meddra.tsv +< 2024-10-18T22:46:06 orphanet_phenotype-meddra +togoid-config config/orphanet_phenotype-meddra update +# Success: output/tsv/orphanet_phenotype-meddra.tsv is updated +> 2024-10-18T22:46:07 orphanet_phenotype-meddra Rule for TSV (output/tsv/orphanet_phenotype-meddra.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-meddra.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:31:48 +0900 +task needed: false +timestamp: 2024-10-18 22:46:07 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for orphanet_phenotype-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for orphanet_phenotype-mesh if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-mesh.tsv is newer than config/orphanet_phenotype-mesh/config.yaml # File output/tsv/orphanet_phenotype-mesh.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-mesh.tsv is created 4.837221419538773 days ago (will be updated when >5 days) -# => Preserving output/tsv/orphanet_phenotype-mesh.tsv +# File output/tsv/orphanet_phenotype-mesh.tsv is created 11.884935703171516 days ago (will be updated when >5 days) +## Update config/orphanet_phenotype-mesh/config.yaml => output/tsv/orphanet_phenotype-mesh.tsv +< 2024-10-18T22:46:07 orphanet_phenotype-mesh +togoid-config config/orphanet_phenotype-mesh update +# Success: output/tsv/orphanet_phenotype-mesh.tsv is updated +> 2024-10-18T22:46:07 orphanet_phenotype-mesh Rule for TSV (output/tsv/orphanet_phenotype-mesh.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-mesh.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:31:48 +0900 +task needed: false +timestamp: 2024-10-18 22:46:07 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for orphanet_phenotype-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for orphanet_phenotype-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-omim_phenotype.tsv is newer than config/orphanet_phenotype-omim_phenotype/config.yaml # File output/tsv/orphanet_phenotype-omim_phenotype.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-omim_phenotype.tsv is created 4.837216644664248 days ago (will be updated when >5 days) -# => Preserving output/tsv/orphanet_phenotype-omim_phenotype.tsv +# File output/tsv/orphanet_phenotype-omim_phenotype.tsv is created 11.884935700465011 days ago (will be updated when >5 days) +## Update config/orphanet_phenotype-omim_phenotype/config.yaml => output/tsv/orphanet_phenotype-omim_phenotype.tsv +< 2024-10-18T22:46:07 orphanet_phenotype-omim_phenotype +togoid-config config/orphanet_phenotype-omim_phenotype update +# Success: output/tsv/orphanet_phenotype-omim_phenotype.tsv is updated +> 2024-10-18T22:46:07 orphanet_phenotype-omim_phenotype Rule for TSV (output/tsv/orphanet_phenotype-omim_phenotype.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-omim_phenotype.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:31:49 +0900 +task needed: false +timestamp: 2024-10-18 22:46:07 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for orphanet_phenotype-orphanet_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for orphanet_phenotype-orphanet_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/orphanet_phenotype-orphanet_gene.tsv is newer than config/orphanet_phenotype-orphanet_gene/config.yaml # File output/tsv/orphanet_phenotype-orphanet_gene.tsv has no timestamp file -# File output/tsv/orphanet_phenotype-orphanet_gene.tsv is created 4.8372112216892935 days ago (will be updated when >5 days) -# => Preserving output/tsv/orphanet_phenotype-orphanet_gene.tsv +# File output/tsv/orphanet_phenotype-orphanet_gene.tsv is created 11.884935090051156 days ago (will be updated when >5 days) +## Update config/orphanet_phenotype-orphanet_gene/config.yaml => output/tsv/orphanet_phenotype-orphanet_gene.tsv +< 2024-10-18T22:46:07 orphanet_phenotype-orphanet_gene +togoid-config config/orphanet_phenotype-orphanet_gene update +# Success: output/tsv/orphanet_phenotype-orphanet_gene.tsv is updated +> 2024-10-18T22:46:08 orphanet_phenotype-orphanet_gene Rule for TSV (output/tsv/orphanet_phenotype-orphanet_gene.tsv) ------------------------------ Investigating output/tsv/orphanet_phenotype-orphanet_gene.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:31:49 +0900 +task needed: false +timestamp: 2024-10-18 22:46:08 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pdb-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pdb-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-go.tsv is newer than config/pdb-go/config.yaml # File output/tsv/pdb-go.tsv has no timestamp file -# File output/tsv/pdb-go.tsv is created 4.837162846864757 days ago (will be updated when >5 days) -# => Preserving output/tsv/pdb-go.tsv +# File output/tsv/pdb-go.tsv is created 11.884891291464584 days ago (will be updated when >5 days) +## Update config/pdb-go/config.yaml => output/tsv/pdb-go.tsv +< 2024-10-18T22:46:08 pdb-go +togoid-config config/pdb-go update +# Success: output/tsv/pdb-go.tsv is updated +> 2024-10-18T22:46:12 pdb-go Rule for TSV (output/tsv/pdb-go.tsv) ------------------------------ Investigating output/tsv/pdb-go.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:31:53 +0900 +task needed: false +timestamp: 2024-10-18 22:46:12 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pdb-interpro if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pdb-interpro if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-interpro.tsv is newer than config/pdb-interpro/config.yaml # File output/tsv/pdb-interpro.tsv has no timestamp file -# File output/tsv/pdb-interpro.tsv is created 4.837145321351285 days ago (will be updated when >5 days) -# => Preserving output/tsv/pdb-interpro.tsv +# File output/tsv/pdb-interpro.tsv is created 11.884920488302349 days ago (will be updated when >5 days) +## Update config/pdb-interpro/config.yaml => output/tsv/pdb-interpro.tsv +< 2024-10-18T22:46:12 pdb-interpro +togoid-config config/pdb-interpro update +# Success: output/tsv/pdb-interpro.tsv is updated +> 2024-10-18T22:46:13 pdb-interpro Rule for TSV (output/tsv/pdb-interpro.tsv) ------------------------------ Investigating output/tsv/pdb-interpro.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:31:55 +0900 +task needed: false +timestamp: 2024-10-18 22:46:13 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pdb-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pdb-pdb_ccd if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-pdb_ccd.tsv is newer than config/pdb-pdb_ccd/config.yaml # File output/tsv/pdb-pdb_ccd.tsv has no timestamp file -# File output/tsv/pdb-pdb_ccd.tsv is created 4.8371323844356136 days ago (will be updated when >5 days) -# => Preserving output/tsv/pdb-pdb_ccd.tsv +# File output/tsv/pdb-pdb_ccd.tsv is created 11.884925517405694 days ago (will be updated when >5 days) +## Update config/pdb-pdb_ccd/config.yaml => output/tsv/pdb-pdb_ccd.tsv +< 2024-10-18T22:46:13 pdb-pdb_ccd +togoid-config config/pdb-pdb_ccd update +# Success: output/tsv/pdb-pdb_ccd.tsv is updated +> 2024-10-18T22:46:15 pdb-pdb_ccd Rule for TSV (output/tsv/pdb-pdb_ccd.tsv) ------------------------------ Investigating output/tsv/pdb-pdb_ccd.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:31:56 +0900 +task needed: false +timestamp: 2024-10-18 22:46:15 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pdb-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pdb-pfam if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-pfam.tsv is newer than config/pdb-pfam/config.yaml # File output/tsv/pdb-pfam.tsv has no timestamp file -# File output/tsv/pdb-pfam.tsv is created 4.837121440851297 days ago (will be updated when >5 days) -# => Preserving output/tsv/pdb-pfam.tsv +# File output/tsv/pdb-pfam.tsv is created 11.884928179428496 days ago (will be updated when >5 days) +## Update config/pdb-pfam/config.yaml => output/tsv/pdb-pfam.tsv +< 2024-10-18T22:46:15 pdb-pfam +togoid-config config/pdb-pfam update +# Success: output/tsv/pdb-pfam.tsv is updated +> 2024-10-18T22:46:15 pdb-pfam Rule for TSV (output/tsv/pdb-pfam.tsv) ------------------------------ Investigating output/tsv/pdb-pfam.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:31:57 +0900 +task needed: false +timestamp: 2024-10-18 22:46:15 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pdb-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pdb-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pdb-uniprot.tsv is newer than config/pdb-uniprot/config.yaml # File output/tsv/pdb-uniprot.tsv has no timestamp file -# File output/tsv/pdb-uniprot.tsv is created 4.837111029098472 days ago (will be updated when >5 days) -# => Preserving output/tsv/pdb-uniprot.tsv +# File output/tsv/pdb-uniprot.tsv is created 11.88492815651287 days ago (will be updated when >5 days) +## Update config/pdb-uniprot/config.yaml => output/tsv/pdb-uniprot.tsv +< 2024-10-18T22:46:15 pdb-uniprot +togoid-config config/pdb-uniprot update +# Success: output/tsv/pdb-uniprot.tsv is updated +> 2024-10-18T22:46:16 pdb-uniprot Rule for TSV (output/tsv/pdb-uniprot.tsv) ------------------------------ Investigating output/tsv/pdb-uniprot.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:31:58 +0900 +task needed: false +timestamp: 2024-10-18 22:46:16 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for pmc-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pmc-pubmed.tsv is newer than config/pmc-pubmed/config.yaml # File output/tsv/pmc-pubmed.tsv is older than input/pmc/download.lock ## Update config/pmc-pubmed/config.yaml => output/tsv/pmc-pubmed.tsv -< 2024-10-11T21:37:24 pmc-pubmed +< 2024-10-18T22:46:16 pmc-pubmed togoid-config config/pmc-pubmed update # Success: output/tsv/pmc-pubmed.tsv is updated -> 2024-10-11T21:43:06 pmc-pubmed +> 2024-10-18T22:51:57 pmc-pubmed Rule for TSV (output/tsv/pmc-pubmed.tsv) ------------------------------ Investigating output/tsv/pmc-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:43:06 +0900 +timestamp: 2024-10-18 22:51:57 +0900 pre-requisites: --output/tsv/ () ---prepare:pmc (2024-10-11 21:43:06 +0900) -latest-prerequisite time: 2024-10-11 21:43:06 +0900 +--prepare:pmc (2024-10-18 22:51:57 +0900) +latest-prerequisite time: 2024-10-18 22:51:57 +0900 ................................ ### Update TSV for prosite-prosite_prorule if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -3667,419 +4109,511 @@ task needed: true timestamp: 2024-10-07 01:37:39 +0900 pre-requisites: --output/tsv/ () ---prepare:prosite (2024-10-11 21:43:06 +0900) -latest-prerequisite time: 2024-10-11 21:43:06 +0900 +--prepare:prosite (2024-10-18 22:51:57 +0900) +latest-prerequisite time: 2024-10-18 22:51:57 +0900 ................................ -### Update TSV for pubchem_compound-atc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pubchem_compound-atc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-atc.tsv is newer than config/pubchem_compound-atc/config.yaml # File output/tsv/pubchem_compound-atc.tsv has no timestamp file -# File output/tsv/pubchem_compound-atc.tsv is created 4.837114121167639 days ago (will be updated when >5 days) -# => Preserving output/tsv/pubchem_compound-atc.tsv +# File output/tsv/pubchem_compound-atc.tsv is created 11.884925941633774 days ago (will be updated when >5 days) +## Update config/pubchem_compound-atc/config.yaml => output/tsv/pubchem_compound-atc.tsv +< 2024-10-18T22:51:57 pubchem_compound-atc +togoid-config config/pubchem_compound-atc update +# Success: output/tsv/pubchem_compound-atc.tsv is updated +> 2024-10-18T22:51:57 pubchem_compound-atc Rule for TSV (output/tsv/pubchem_compound-atc.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-atc.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:37:39 +0900 +task needed: false +timestamp: 2024-10-18 22:51:57 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pubchem_compound-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pubchem_compound-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-chebi.tsv is newer than config/pubchem_compound-chebi/config.yaml # File output/tsv/pubchem_compound-chebi.tsv has no timestamp file -# File output/tsv/pubchem_compound-chebi.tsv is created 4.8371065117732295 days ago (will be updated when >5 days) -# => Preserving output/tsv/pubchem_compound-chebi.tsv +# File output/tsv/pubchem_compound-chebi.tsv is created 11.884923362686862 days ago (will be updated when >5 days) +## Update config/pubchem_compound-chebi/config.yaml => output/tsv/pubchem_compound-chebi.tsv +< 2024-10-18T22:51:57 pubchem_compound-chebi +togoid-config config/pubchem_compound-chebi update +# Success: output/tsv/pubchem_compound-chebi.tsv is updated +> 2024-10-18T22:51:58 pubchem_compound-chebi Rule for TSV (output/tsv/pubchem_compound-chebi.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-chebi.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:37:40 +0900 +task needed: false +timestamp: 2024-10-18 22:51:58 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pubchem_compound-chembl_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pubchem_compound-chembl_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-chembl_compound.tsv is newer than config/pubchem_compound-chembl_compound/config.yaml # File output/tsv/pubchem_compound-chembl_compound.tsv has no timestamp file -# File output/tsv/pubchem_compound-chembl_compound.tsv is created 4.837045741845822 days ago (will be updated when >5 days) -# => Preserving output/tsv/pubchem_compound-chembl_compound.tsv +# File output/tsv/pubchem_compound-chembl_compound.tsv is created 11.884871914566979 days ago (will be updated when >5 days) +## Update config/pubchem_compound-chembl_compound/config.yaml => output/tsv/pubchem_compound-chembl_compound.tsv +< 2024-10-18T22:51:58 pubchem_compound-chembl_compound +togoid-config config/pubchem_compound-chembl_compound update +# Success: output/tsv/pubchem_compound-chembl_compound.tsv is updated +> 2024-10-18T22:52:03 pubchem_compound-chembl_compound Rule for TSV (output/tsv/pubchem_compound-chembl_compound.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-chembl_compound.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:37:45 +0900 +task needed: false +timestamp: 2024-10-18 22:52:03 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pubchem_compound-drugbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pubchem_compound-drugbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-drugbank.tsv is newer than config/pubchem_compound-drugbank/config.yaml # File output/tsv/pubchem_compound-drugbank.tsv has no timestamp file -# File output/tsv/pubchem_compound-drugbank.tsv is created 4.837040712505533 days ago (will be updated when >5 days) -# => Preserving output/tsv/pubchem_compound-drugbank.tsv +# File output/tsv/pubchem_compound-drugbank.tsv is created 11.884924684049793 days ago (will be updated when >5 days) +## Update config/pubchem_compound-drugbank/config.yaml => output/tsv/pubchem_compound-drugbank.tsv +< 2024-10-18T22:52:03 pubchem_compound-drugbank +togoid-config config/pubchem_compound-drugbank update +# Success: output/tsv/pubchem_compound-drugbank.tsv is updated +> 2024-10-18T22:52:04 pubchem_compound-drugbank Rule for TSV (output/tsv/pubchem_compound-drugbank.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-drugbank.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:37:46 +0900 +task needed: false +timestamp: 2024-10-18 22:52:04 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pubchem_compound-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pubchem_compound-glytoucan if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-glytoucan.tsv is newer than config/pubchem_compound-glytoucan/config.yaml # File output/tsv/pubchem_compound-glytoucan.tsv has no timestamp file -# File output/tsv/pubchem_compound-glytoucan.tsv is created 4.8370345528861 days ago (will be updated when >5 days) -# => Preserving output/tsv/pubchem_compound-glytoucan.tsv +# File output/tsv/pubchem_compound-glytoucan.tsv is created 11.884923393072153 days ago (will be updated when >5 days) +## Update config/pubchem_compound-glytoucan/config.yaml => output/tsv/pubchem_compound-glytoucan.tsv +< 2024-10-18T22:52:04 pubchem_compound-glytoucan +togoid-config config/pubchem_compound-glytoucan update +# Success: output/tsv/pubchem_compound-glytoucan.tsv is updated +> 2024-10-18T22:52:04 pubchem_compound-glytoucan Rule for TSV (output/tsv/pubchem_compound-glytoucan.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-glytoucan.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:37:46 +0900 +task needed: false +timestamp: 2024-10-18 22:52:04 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pubchem_compound-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pubchem_compound-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_compound-inchi_key.tsv is newer than config/pubchem_compound-inchi_key/config.yaml # File output/tsv/pubchem_compound-inchi_key.tsv has no timestamp file -# File output/tsv/pubchem_compound-inchi_key.tsv is created 4.830625748633206 days ago (will be updated when >5 days) -# => Preserving output/tsv/pubchem_compound-inchi_key.tsv +# File output/tsv/pubchem_compound-inchi_key.tsv is created 11.878520600119908 days ago (will be updated when >5 days) +## Update config/pubchem_compound-inchi_key/config.yaml => output/tsv/pubchem_compound-inchi_key.tsv +< 2024-10-18T22:52:04 pubchem_compound-inchi_key +togoid-config config/pubchem_compound-inchi_key update +# Success: output/tsv/pubchem_compound-inchi_key.tsv is updated +> 2024-10-18T23:00:55 pubchem_compound-inchi_key Rule for TSV (output/tsv/pubchem_compound-inchi_key.tsv) ------------------------------ Investigating output/tsv/pubchem_compound-inchi_key.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:47:00 +0900 +task needed: false +timestamp: 2024-10-18 23:00:55 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pubchem_pathway-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pubchem_pathway-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-ncbigene.tsv is newer than config/pubchem_pathway-ncbigene/config.yaml # File output/tsv/pubchem_pathway-ncbigene.tsv has no timestamp file -# File output/tsv/pubchem_pathway-ncbigene.tsv is created 4.830619989997674 days ago (will be updated when >5 days) -# => Preserving output/tsv/pubchem_pathway-ncbigene.tsv +# File output/tsv/pubchem_pathway-ncbigene.tsv is created 11.884663512202362 days ago (will be updated when >5 days) +## Update config/pubchem_pathway-ncbigene/config.yaml => output/tsv/pubchem_pathway-ncbigene.tsv +< 2024-10-18T23:00:55 pubchem_pathway-ncbigene +togoid-config config/pubchem_pathway-ncbigene update +# Success: output/tsv/pubchem_pathway-ncbigene.tsv is updated +> 2024-10-18T23:00:56 pubchem_pathway-ncbigene Rule for TSV (output/tsv/pubchem_pathway-ncbigene.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-ncbigene.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:47:01 +0900 +task needed: false +timestamp: 2024-10-18 23:00:56 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pubchem_pathway-pathbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pubchem_pathway-pathbank if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-pathbank.tsv is newer than config/pubchem_pathway-pathbank/config.yaml # File output/tsv/pubchem_pathway-pathbank.tsv has no timestamp file -# File output/tsv/pubchem_pathway-pathbank.tsv is created 4.830613826214595 days ago (will be updated when >5 days) -# => Preserving output/tsv/pubchem_pathway-pathbank.tsv +# File output/tsv/pubchem_pathway-pathbank.tsv is created 11.884662789894676 days ago (will be updated when >5 days) +## Update config/pubchem_pathway-pathbank/config.yaml => output/tsv/pubchem_pathway-pathbank.tsv +< 2024-10-18T23:00:56 pubchem_pathway-pathbank +togoid-config config/pubchem_pathway-pathbank update +# Success: output/tsv/pubchem_pathway-pathbank.tsv is updated +> 2024-10-18T23:00:56 pubchem_pathway-pathbank Rule for TSV (output/tsv/pubchem_pathway-pathbank.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-pathbank.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:47:01 +0900 +task needed: false +timestamp: 2024-10-18 23:00:56 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pubchem_pathway-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pubchem_pathway-pubchem_compound if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-pubchem_compound.tsv is newer than config/pubchem_pathway-pubchem_compound/config.yaml # File output/tsv/pubchem_pathway-pubchem_compound.tsv has no timestamp file -# File output/tsv/pubchem_pathway-pubchem_compound.tsv is created 4.830580601948079 days ago (will be updated when >5 days) -# => Preserving output/tsv/pubchem_pathway-pubchem_compound.tsv +# File output/tsv/pubchem_pathway-pubchem_compound.tsv is created 11.884635191833635 days ago (will be updated when >5 days) +## Update config/pubchem_pathway-pubchem_compound/config.yaml => output/tsv/pubchem_pathway-pubchem_compound.tsv +< 2024-10-18T23:00:56 pubchem_pathway-pubchem_compound +togoid-config config/pubchem_pathway-pubchem_compound update +# Success: output/tsv/pubchem_pathway-pubchem_compound.tsv is updated +> 2024-10-18T23:01:00 pubchem_pathway-pubchem_compound Rule for TSV (output/tsv/pubchem_pathway-pubchem_compound.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-pubchem_compound.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:47:04 +0900 +task needed: false +timestamp: 2024-10-18 23:01:00 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pubchem_pathway-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pubchem_pathway-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-reactome_pathway.tsv is newer than config/pubchem_pathway-reactome_pathway/config.yaml # File output/tsv/pubchem_pathway-reactome_pathway.tsv has no timestamp file -# File output/tsv/pubchem_pathway-reactome_pathway.tsv is created 4.830575734474479 days ago (will be updated when >5 days) -# => Preserving output/tsv/pubchem_pathway-reactome_pathway.tsv +# File output/tsv/pubchem_pathway-reactome_pathway.tsv is created 11.884670181302477 days ago (will be updated when >5 days) +## Update config/pubchem_pathway-reactome_pathway/config.yaml => output/tsv/pubchem_pathway-reactome_pathway.tsv +< 2024-10-18T23:01:00 pubchem_pathway-reactome_pathway +togoid-config config/pubchem_pathway-reactome_pathway update +# Success: output/tsv/pubchem_pathway-reactome_pathway.tsv is updated +> 2024-10-18T23:01:00 pubchem_pathway-reactome_pathway Rule for TSV (output/tsv/pubchem_pathway-reactome_pathway.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-reactome_pathway.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:47:04 +0900 +task needed: false +timestamp: 2024-10-18 23:01:00 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pubchem_pathway-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pubchem_pathway-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-uniprot.tsv is newer than config/pubchem_pathway-uniprot/config.yaml # File output/tsv/pubchem_pathway-uniprot.tsv has no timestamp file -# File output/tsv/pubchem_pathway-uniprot.tsv is created 4.830559096026782 days ago (will be updated when >5 days) -# => Preserving output/tsv/pubchem_pathway-uniprot.tsv +# File output/tsv/pubchem_pathway-uniprot.tsv is created 11.88465815309317 days ago (will be updated when >5 days) +## Update config/pubchem_pathway-uniprot/config.yaml => output/tsv/pubchem_pathway-uniprot.tsv +< 2024-10-18T23:01:00 pubchem_pathway-uniprot +togoid-config config/pubchem_pathway-uniprot update +# Success: output/tsv/pubchem_pathway-uniprot.tsv is updated +> 2024-10-18T23:01:02 pubchem_pathway-uniprot Rule for TSV (output/tsv/pubchem_pathway-uniprot.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-uniprot.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:47:06 +0900 +task needed: false +timestamp: 2024-10-18 23:01:02 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for pubchem_pathway-wikipathways if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for pubchem_pathway-wikipathways if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/pubchem_pathway-wikipathways.tsv is newer than config/pubchem_pathway-wikipathways/config.yaml # File output/tsv/pubchem_pathway-wikipathways.tsv has no timestamp file -# File output/tsv/pubchem_pathway-wikipathways.tsv is created 4.830554321025672 days ago (will be updated when >5 days) -# => Preserving output/tsv/pubchem_pathway-wikipathways.tsv +# File output/tsv/pubchem_pathway-wikipathways.tsv is created 11.884671338633392 days ago (will be updated when >5 days) +## Update config/pubchem_pathway-wikipathways/config.yaml => output/tsv/pubchem_pathway-wikipathways.tsv +< 2024-10-18T23:01:02 pubchem_pathway-wikipathways +togoid-config config/pubchem_pathway-wikipathways update +# Success: output/tsv/pubchem_pathway-wikipathways.tsv is updated +> 2024-10-18T23:01:02 pubchem_pathway-wikipathways Rule for TSV (output/tsv/pubchem_pathway-wikipathways.tsv) ------------------------------ Investigating output/tsv/pubchem_pathway-wikipathways.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 01:47:06 +0900 +task needed: false +timestamp: 2024-10-18 23:01:02 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for reactome_pathway-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for reactome_pathway-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-chebi.tsv is newer than config/reactome_pathway-chebi/config.yaml # File output/tsv/reactome_pathway-chebi.tsv has no timestamp file -# File output/tsv/reactome_pathway-chebi.tsv is created 4.830544743229908 days ago (will be updated when >5 days) -# => Preserving output/tsv/reactome_pathway-chebi.tsv +# File output/tsv/reactome_pathway-chebi.tsv is created 11.884666387764584 days ago (will be updated when >5 days) +## Update config/reactome_pathway-chebi/config.yaml => output/tsv/reactome_pathway-chebi.tsv +< 2024-10-18T23:01:02 reactome_pathway-chebi +togoid-config config/reactome_pathway-chebi update +# Success: output/tsv/reactome_pathway-chebi.tsv is updated +> 2024-10-18T23:01:03 reactome_pathway-chebi Rule for TSV (output/tsv/reactome_pathway-chebi.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:47:07 +0900 +timestamp: 2024-10-18 23:01:03 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-10-11 21:43:06 +0900) -latest-prerequisite time: 2024-10-11 21:43:06 +0900 +--prepare:reactome (2024-10-18 23:01:03 +0900) +latest-prerequisite time: 2024-10-18 23:01:03 +0900 ................................ -### Update TSV for reactome_pathway-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for reactome_pathway-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-go.tsv is newer than config/reactome_pathway-go/config.yaml # File output/tsv/reactome_pathway-go.tsv has no timestamp file -# File output/tsv/reactome_pathway-go.tsv is created 4.830539482129305 days ago (will be updated when >5 days) -# => Preserving output/tsv/reactome_pathway-go.tsv +# File output/tsv/reactome_pathway-go.tsv is created 11.884668033814433 days ago (will be updated when >5 days) +## Update config/reactome_pathway-go/config.yaml => output/tsv/reactome_pathway-go.tsv +< 2024-10-18T23:01:03 reactome_pathway-go +togoid-config config/reactome_pathway-go update +# Success: output/tsv/reactome_pathway-go.tsv is updated +> 2024-10-18T23:01:03 reactome_pathway-go Rule for TSV (output/tsv/reactome_pathway-go.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:47:07 +0900 +timestamp: 2024-10-18 23:01:03 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-10-11 21:43:06 +0900) -latest-prerequisite time: 2024-10-11 21:43:06 +0900 +--prepare:reactome (2024-10-18 23:01:03 +0900) +latest-prerequisite time: 2024-10-18 23:01:03 +0900 ................................ -### Update TSV for reactome_pathway-iuphar_ligand if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for reactome_pathway-iuphar_ligand if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-iuphar_ligand.tsv is newer than config/reactome_pathway-iuphar_ligand/config.yaml # File output/tsv/reactome_pathway-iuphar_ligand.tsv has no timestamp file -# File output/tsv/reactome_pathway-iuphar_ligand.tsv is created 4.830534776771447 days ago (will be updated when >5 days) -# => Preserving output/tsv/reactome_pathway-iuphar_ligand.tsv +# File output/tsv/reactome_pathway-iuphar_ligand.tsv is created 11.884668655426447 days ago (will be updated when >5 days) +## Update config/reactome_pathway-iuphar_ligand/config.yaml => output/tsv/reactome_pathway-iuphar_ligand.tsv +< 2024-10-18T23:01:03 reactome_pathway-iuphar_ligand +togoid-config config/reactome_pathway-iuphar_ligand update +# Success: output/tsv/reactome_pathway-iuphar_ligand.tsv is updated +> 2024-10-18T23:01:04 reactome_pathway-iuphar_ligand Rule for TSV (output/tsv/reactome_pathway-iuphar_ligand.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-iuphar_ligand.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:47:08 +0900 +timestamp: 2024-10-18 23:01:04 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-10-11 21:43:06 +0900) -latest-prerequisite time: 2024-10-11 21:43:06 +0900 +--prepare:reactome (2024-10-18 23:01:04 +0900) +latest-prerequisite time: 2024-10-18 23:01:04 +0900 ................................ -### Update TSV for reactome_pathway-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for reactome_pathway-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-mirbase.tsv is newer than config/reactome_pathway-mirbase/config.yaml # File output/tsv/reactome_pathway-mirbase.tsv has no timestamp file -# File output/tsv/reactome_pathway-mirbase.tsv is created 4.830532189363217 days ago (will be updated when >5 days) -# => Preserving output/tsv/reactome_pathway-mirbase.tsv +# File output/tsv/reactome_pathway-mirbase.tsv is created 11.884669767610486 days ago (will be updated when >5 days) +## Update config/reactome_pathway-mirbase/config.yaml => output/tsv/reactome_pathway-mirbase.tsv +< 2024-10-18T23:01:04 reactome_pathway-mirbase +togoid-config config/reactome_pathway-mirbase update +# Success: output/tsv/reactome_pathway-mirbase.tsv is updated +> 2024-10-18T23:01:04 reactome_pathway-mirbase Rule for TSV (output/tsv/reactome_pathway-mirbase.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:47:08 +0900 +timestamp: 2024-10-18 23:01:04 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-10-11 21:43:06 +0900) -latest-prerequisite time: 2024-10-11 21:43:06 +0900 +--prepare:reactome (2024-10-18 23:01:04 +0900) +latest-prerequisite time: 2024-10-18 23:01:04 +0900 ................................ -### Update TSV for reactome_pathway-reactome_reaction if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for reactome_pathway-reactome_reaction if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-reactome_reaction.tsv is newer than config/reactome_pathway-reactome_reaction/config.yaml # File output/tsv/reactome_pathway-reactome_reaction.tsv has no timestamp file -# File output/tsv/reactome_pathway-reactome_reaction.tsv is created 4.830518250994491 days ago (will be updated when >5 days) -# => Preserving output/tsv/reactome_pathway-reactome_reaction.tsv +# File output/tsv/reactome_pathway-reactome_reaction.tsv is created 11.884658393161343 days ago (will be updated when >5 days) +## Update config/reactome_pathway-reactome_reaction/config.yaml => output/tsv/reactome_pathway-reactome_reaction.tsv +< 2024-10-18T23:01:04 reactome_pathway-reactome_reaction +togoid-config config/reactome_pathway-reactome_reaction update +# Success: output/tsv/reactome_pathway-reactome_reaction.tsv is updated +> 2024-10-18T23:01:05 reactome_pathway-reactome_reaction Rule for TSV (output/tsv/reactome_pathway-reactome_reaction.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-reactome_reaction.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:47:09 +0900 +timestamp: 2024-10-18 23:01:05 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-10-11 21:43:06 +0900) -latest-prerequisite time: 2024-10-11 21:43:06 +0900 +--prepare:reactome (2024-10-18 23:01:05 +0900) +latest-prerequisite time: 2024-10-18 23:01:05 +0900 ................................ -### Update TSV for reactome_pathway-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for reactome_pathway-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_pathway-uniprot.tsv is newer than config/reactome_pathway-uniprot/config.yaml # File output/tsv/reactome_pathway-uniprot.tsv has no timestamp file -# File output/tsv/reactome_pathway-uniprot.tsv is created 4.83049054768059 days ago (will be updated when >5 days) -# => Preserving output/tsv/reactome_pathway-uniprot.tsv +# File output/tsv/reactome_pathway-uniprot.tsv is created 11.88464371445374 days ago (will be updated when >5 days) +## Update config/reactome_pathway-uniprot/config.yaml => output/tsv/reactome_pathway-uniprot.tsv +< 2024-10-18T23:01:05 reactome_pathway-uniprot +togoid-config config/reactome_pathway-uniprot update +# Success: output/tsv/reactome_pathway-uniprot.tsv is updated +> 2024-10-18T23:01:06 reactome_pathway-uniprot Rule for TSV (output/tsv/reactome_pathway-uniprot.tsv) ------------------------------ Investigating output/tsv/reactome_pathway-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:47:12 +0900 +timestamp: 2024-10-18 23:01:06 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-10-11 21:43:06 +0900) -latest-prerequisite time: 2024-10-11 21:43:06 +0900 +--prepare:reactome (2024-10-18 23:01:06 +0900) +latest-prerequisite time: 2024-10-18 23:01:06 +0900 ................................ -### Update TSV for reactome_reaction-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for reactome_reaction-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-chebi.tsv is newer than config/reactome_reaction-chebi/config.yaml # File output/tsv/reactome_reaction-chebi.tsv has no timestamp file -# File output/tsv/reactome_reaction-chebi.tsv is created 4.830479522832234 days ago (will be updated when >5 days) -# => Preserving output/tsv/reactome_reaction-chebi.tsv +# File output/tsv/reactome_reaction-chebi.tsv is created 11.88464749595816 days ago (will be updated when >5 days) +## Update config/reactome_reaction-chebi/config.yaml => output/tsv/reactome_reaction-chebi.tsv +< 2024-10-18T23:01:06 reactome_reaction-chebi +togoid-config config/reactome_reaction-chebi update +# Success: output/tsv/reactome_reaction-chebi.tsv is updated +> 2024-10-18T23:01:07 reactome_reaction-chebi Rule for TSV (output/tsv/reactome_reaction-chebi.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:47:13 +0900 +timestamp: 2024-10-18 23:01:07 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-10-11 21:43:06 +0900) -latest-prerequisite time: 2024-10-11 21:43:06 +0900 +--prepare:reactome (2024-10-18 23:01:07 +0900) +latest-prerequisite time: 2024-10-18 23:01:07 +0900 ................................ -### Update TSV for reactome_reaction-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for reactome_reaction-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-go.tsv is newer than config/reactome_reaction-go/config.yaml # File output/tsv/reactome_reaction-go.tsv has no timestamp file -# File output/tsv/reactome_reaction-go.tsv is created 4.830474574244607 days ago (will be updated when >5 days) -# => Preserving output/tsv/reactome_reaction-go.tsv +# File output/tsv/reactome_reaction-go.tsv is created 11.884648729271678 days ago (will be updated when >5 days) +## Update config/reactome_reaction-go/config.yaml => output/tsv/reactome_reaction-go.tsv +< 2024-10-18T23:01:07 reactome_reaction-go +togoid-config config/reactome_reaction-go update +# Success: output/tsv/reactome_reaction-go.tsv is updated +> 2024-10-18T23:01:07 reactome_reaction-go Rule for TSV (output/tsv/reactome_reaction-go.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-go.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:47:13 +0900 +timestamp: 2024-10-18 23:01:07 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-10-11 21:43:06 +0900) -latest-prerequisite time: 2024-10-11 21:43:06 +0900 +--prepare:reactome (2024-10-18 23:01:07 +0900) +latest-prerequisite time: 2024-10-18 23:01:07 +0900 ................................ -### Update TSV for reactome_reaction-iuphar_ligand if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for reactome_reaction-iuphar_ligand if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-iuphar_ligand.tsv is newer than config/reactome_reaction-iuphar_ligand/config.yaml # File output/tsv/reactome_reaction-iuphar_ligand.tsv has no timestamp file -# File output/tsv/reactome_reaction-iuphar_ligand.tsv is created 4.8304715470941435 days ago (will be updated when >5 days) -# => Preserving output/tsv/reactome_reaction-iuphar_ligand.tsv +# File output/tsv/reactome_reaction-iuphar_ligand.tsv is created 11.884650422750301 days ago (will be updated when >5 days) +## Update config/reactome_reaction-iuphar_ligand/config.yaml => output/tsv/reactome_reaction-iuphar_ligand.tsv +< 2024-10-18T23:01:07 reactome_reaction-iuphar_ligand +togoid-config config/reactome_reaction-iuphar_ligand update +# Success: output/tsv/reactome_reaction-iuphar_ligand.tsv is updated +> 2024-10-18T23:01:07 reactome_reaction-iuphar_ligand Rule for TSV (output/tsv/reactome_reaction-iuphar_ligand.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-iuphar_ligand.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:47:13 +0900 +timestamp: 2024-10-18 23:01:07 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-10-11 21:43:06 +0900) -latest-prerequisite time: 2024-10-11 21:43:06 +0900 +--prepare:reactome (2024-10-18 23:01:07 +0900) +latest-prerequisite time: 2024-10-18 23:01:07 +0900 ................................ -### Update TSV for reactome_reaction-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for reactome_reaction-mirbase if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-mirbase.tsv is newer than config/reactome_reaction-mirbase/config.yaml # File output/tsv/reactome_reaction-mirbase.tsv has no timestamp file -# File output/tsv/reactome_reaction-mirbase.tsv is created 4.830469457246712 days ago (will be updated when >5 days) -# => Preserving output/tsv/reactome_reaction-mirbase.tsv +# File output/tsv/reactome_reaction-mirbase.tsv is created 11.884651320938774 days ago (will be updated when >5 days) +## Update config/reactome_reaction-mirbase/config.yaml => output/tsv/reactome_reaction-mirbase.tsv +< 2024-10-18T23:01:07 reactome_reaction-mirbase +togoid-config config/reactome_reaction-mirbase update +# Success: output/tsv/reactome_reaction-mirbase.tsv is updated +> 2024-10-18T23:01:08 reactome_reaction-mirbase Rule for TSV (output/tsv/reactome_reaction-mirbase.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-mirbase.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:47:14 +0900 +timestamp: 2024-10-18 23:01:08 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-10-11 21:43:06 +0900) -latest-prerequisite time: 2024-10-11 21:43:06 +0900 +--prepare:reactome (2024-10-18 23:01:08 +0900) +latest-prerequisite time: 2024-10-18 23:01:08 +0900 ................................ -### Update TSV for reactome_reaction-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for reactome_reaction-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/reactome_reaction-uniprot.tsv is newer than config/reactome_reaction-uniprot/config.yaml # File output/tsv/reactome_reaction-uniprot.tsv has no timestamp file -# File output/tsv/reactome_reaction-uniprot.tsv is created 4.830448617390752 days ago (will be updated when >5 days) -# => Preserving output/tsv/reactome_reaction-uniprot.tsv +# File output/tsv/reactome_reaction-uniprot.tsv is created 11.884632159445207 days ago (will be updated when >5 days) +## Update config/reactome_reaction-uniprot/config.yaml => output/tsv/reactome_reaction-uniprot.tsv +< 2024-10-18T23:01:08 reactome_reaction-uniprot +togoid-config config/reactome_reaction-uniprot update +# Success: output/tsv/reactome_reaction-uniprot.tsv is updated +> 2024-10-18T23:01:09 reactome_reaction-uniprot Rule for TSV (output/tsv/reactome_reaction-uniprot.tsv) ------------------------------ Investigating output/tsv/reactome_reaction-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:47:15 +0900 +timestamp: 2024-10-18 23:01:09 +0900 pre-requisites: --output/tsv/ () ---prepare:reactome (2024-10-11 21:43:06 +0900) -latest-prerequisite time: 2024-10-11 21:43:06 +0900 +--prepare:reactome (2024-10-18 23:01:09 +0900) +latest-prerequisite time: 2024-10-18 23:01:09 +0900 ................................ ### Update TSV for refseq_protein-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/refseq_protein-uniprot.tsv is newer than config/refseq_protein-uniprot/config.yaml # File output/tsv/refseq_protein-uniprot.tsv is older than input/refseq_protein/download.lock ## Update config/refseq_protein-uniprot/config.yaml => output/tsv/refseq_protein-uniprot.tsv -< 2024-10-11T21:43:06 refseq_protein-uniprot +< 2024-10-18T23:01:09 refseq_protein-uniprot togoid-config config/refseq_protein-uniprot update # Success: output/tsv/refseq_protein-uniprot.tsv is updated -> 2024-10-11T21:49:27 refseq_protein-uniprot +> 2024-10-18T23:07:25 refseq_protein-uniprot Rule for TSV (output/tsv/refseq_protein-uniprot.tsv) ------------------------------ Investigating output/tsv/refseq_protein-uniprot.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:49:27 +0900 +timestamp: 2024-10-18 23:07:25 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_protein (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:refseq_protein (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ ### Update TSV for refseq_rna-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4094,8 +4628,8 @@ task needed: true timestamp: 2024-09-21 06:40:08 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:refseq_rna (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ ### Update TSV for refseq_rna-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4110,8 +4644,8 @@ task needed: true timestamp: 2024-09-21 06:41:55 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:refseq_rna (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ ### Update TSV for refseq_rna-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4126,8 +4660,8 @@ task needed: true timestamp: 2024-09-21 06:46:43 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:refseq_rna (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ ### Update TSV for refseq_rna-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4142,8 +4676,8 @@ task needed: true timestamp: 2024-09-21 06:48:33 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:refseq_rna (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ ### Update TSV for refseq_rna-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4158,8 +4692,8 @@ task needed: true timestamp: 2024-09-21 06:50:34 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:refseq_rna (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ ### Update TSV for refseq_rna-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4174,8 +4708,8 @@ task needed: true timestamp: 2024-09-21 06:55:14 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:refseq_rna (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ ### Update TSV for refseq_rna-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4190,8 +4724,8 @@ task needed: true timestamp: 2024-09-21 06:58:58 +0900 pre-requisites: --output/tsv/ () ---prepare:refseq_rna (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:refseq_rna (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ ### Update TSV for rhea-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4206,8 +4740,8 @@ task needed: true timestamp: 2024-10-07 01:54:59 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:rhea (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ ### Update TSV for rhea-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4222,8 +4756,8 @@ task needed: true timestamp: 2024-10-07 01:55:00 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:rhea (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ ### Update TSV for rhea-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4238,8 +4772,8 @@ task needed: true timestamp: 2024-10-07 01:55:00 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:rhea (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ ### Update TSV for rhea-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4254,8 +4788,8 @@ task needed: true timestamp: 2024-10-07 01:55:02 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:rhea (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ ### Update TSV for rhea-reactome_reaction if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4270,8 +4804,8 @@ task needed: true timestamp: 2024-10-07 01:55:03 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:rhea (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ ### Update TSV for rhea-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4286,548 +4820,656 @@ task needed: true timestamp: 2024-10-07 01:55:41 +0900 pre-requisites: --output/tsv/ () ---prepare:rhea (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:rhea (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ -### Update TSV for sra_accession-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_accession-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-bioproject.tsv is newer than config/sra_accession-bioproject/config.yaml # File output/tsv/sra_accession-bioproject.tsv has no timestamp file -# File output/tsv/sra_accession-bioproject.tsv is created 4.827119914957708 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_accession-bioproject.tsv +# File output/tsv/sra_accession-bioproject.tsv is created 6.395081311850694 days ago (will be updated when >5 days) +## Update config/sra_accession-bioproject/config.yaml => output/tsv/sra_accession-bioproject.tsv +< 2024-10-18T23:07:25 sra_accession-bioproject +togoid-config config/sra_accession-bioproject update +# Success: output/tsv/sra_accession-bioproject.tsv is updated +> 2024-10-18T23:09:14 sra_accession-bioproject Rule for TSV (output/tsv/sra_accession-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_accession-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 01:58:24 +0900 +timestamp: 2024-10-18 23:09:14 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-18 23:09:14 +0900) +latest-prerequisite time: 2024-10-18 23:09:14 +0900 ................................ -### Update TSV for sra_accession-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_accession-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-biosample.tsv is newer than config/sra_accession-biosample/config.yaml # File output/tsv/sra_accession-biosample.tsv has no timestamp file -# File output/tsv/sra_accession-biosample.tsv is created 4.821403117174792 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_accession-biosample.tsv +# File output/tsv/sra_accession-biosample.tsv is created 6.390563437871806 days ago (will be updated when >5 days) +## Update config/sra_accession-biosample/config.yaml => output/tsv/sra_accession-biosample.tsv +< 2024-10-18T23:09:14 sra_accession-biosample +togoid-config config/sra_accession-biosample update +# Success: output/tsv/sra_accession-biosample.tsv is updated +> 2024-10-18T23:17:25 sra_accession-biosample Rule for TSV (output/tsv/sra_accession-biosample.tsv) ------------------------------ Investigating output/tsv/sra_accession-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:06:38 +0900 +timestamp: 2024-10-18 23:17:25 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-18 23:17:25 +0900) +latest-prerequisite time: 2024-10-18 23:17:25 +0900 ................................ -### Update TSV for sra_accession-sra_analysis if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_accession-sra_analysis if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_analysis.tsv is newer than config/sra_accession-sra_analysis/config.yaml # File output/tsv/sra_accession-sra_analysis.tsv has no timestamp file -# File output/tsv/sra_accession-sra_analysis.tsv is created 4.820614331288495 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_accession-sra_analysis.tsv +# File output/tsv/sra_accession-sra_analysis.tsv is created 6.395309173791979 days ago (will be updated when >5 days) +## Update config/sra_accession-sra_analysis/config.yaml => output/tsv/sra_accession-sra_analysis.tsv +< 2024-10-18T23:17:25 sra_accession-sra_analysis +togoid-config config/sra_accession-sra_analysis update +# Success: output/tsv/sra_accession-sra_analysis.tsv is updated +> 2024-10-18T23:18:33 sra_accession-sra_analysis Rule for TSV (output/tsv/sra_accession-sra_analysis.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_analysis.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:07:46 +0900 +timestamp: 2024-10-18 23:18:33 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-18 23:18:33 +0900) +latest-prerequisite time: 2024-10-18 23:18:33 +0900 ................................ -### Update TSV for sra_accession-sra_experiment if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_accession-sra_experiment if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_experiment.tsv is newer than config/sra_accession-sra_experiment/config.yaml # File output/tsv/sra_accession-sra_experiment.tsv has no timestamp file -# File output/tsv/sra_accession-sra_experiment.tsv is created 4.815920701392049 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_accession-sra_experiment.tsv +# File output/tsv/sra_accession-sra_experiment.tsv is created 6.39121187335368 days ago (will be updated when >5 days) +## Update config/sra_accession-sra_experiment/config.yaml => output/tsv/sra_accession-sra_experiment.tsv +< 2024-10-18T23:18:33 sra_accession-sra_experiment +togoid-config config/sra_accession-sra_experiment update +# Success: output/tsv/sra_accession-sra_experiment.tsv is updated +> 2024-10-18T23:25:33 sra_accession-sra_experiment Rule for TSV (output/tsv/sra_accession-sra_experiment.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_experiment.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:14:31 +0900 +timestamp: 2024-10-18 23:25:33 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-18 23:25:33 +0900) +latest-prerequisite time: 2024-10-18 23:25:33 +0900 ................................ -### Update TSV for sra_accession-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_accession-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_project.tsv is newer than config/sra_accession-sra_project/config.yaml # File output/tsv/sra_accession-sra_project.tsv has no timestamp file -# File output/tsv/sra_accession-sra_project.tsv is created 4.815154809143669 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_accession-sra_project.tsv +# File output/tsv/sra_accession-sra_project.tsv is created 6.395242266038379 days ago (will be updated when >5 days) +## Update config/sra_accession-sra_project/config.yaml => output/tsv/sra_accession-sra_project.tsv +< 2024-10-18T23:25:33 sra_accession-sra_project +togoid-config config/sra_accession-sra_project update +# Success: output/tsv/sra_accession-sra_project.tsv is updated +> 2024-10-18T23:26:40 sra_accession-sra_project Rule for TSV (output/tsv/sra_accession-sra_project.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:15:37 +0900 +timestamp: 2024-10-18 23:26:40 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-18 23:26:40 +0900) +latest-prerequisite time: 2024-10-18 23:26:40 +0900 ................................ -### Update TSV for sra_accession-sra_run if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_accession-sra_run if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_run.tsv is newer than config/sra_accession-sra_run/config.yaml # File output/tsv/sra_accession-sra_run.tsv has no timestamp file -# File output/tsv/sra_accession-sra_run.tsv is created 4.809942332974144 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_accession-sra_run.tsv +# File output/tsv/sra_accession-sra_run.tsv is created 6.390451837286609 days ago (will be updated when >5 days) +## Update config/sra_accession-sra_run/config.yaml => output/tsv/sra_accession-sra_run.tsv +< 2024-10-18T23:26:40 sra_accession-sra_run +togoid-config config/sra_accession-sra_run update +# Success: output/tsv/sra_accession-sra_run.tsv is updated +> 2024-10-18T23:34:28 sra_accession-sra_run Rule for TSV (output/tsv/sra_accession-sra_run.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_run.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:23:08 +0900 +timestamp: 2024-10-18 23:34:28 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-18 23:34:28 +0900) +latest-prerequisite time: 2024-10-18 23:34:28 +0900 ................................ -### Update TSV for sra_accession-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_accession-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_accession-sra_sample.tsv is newer than config/sra_accession-sra_sample/config.yaml # File output/tsv/sra_accession-sra_sample.tsv has no timestamp file -# File output/tsv/sra_accession-sra_sample.tsv is created 4.805452905965092 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_accession-sra_sample.tsv +# File output/tsv/sra_accession-sra_sample.tsv is created 6.391061663625787 days ago (will be updated when >5 days) +## Update config/sra_accession-sra_sample/config.yaml => output/tsv/sra_accession-sra_sample.tsv +< 2024-10-18T23:34:28 sra_accession-sra_sample +togoid-config config/sra_accession-sra_sample update +# Success: output/tsv/sra_accession-sra_sample.tsv is updated +> 2024-10-18T23:41:07 sra_accession-sra_sample Rule for TSV (output/tsv/sra_accession-sra_sample.tsv) ------------------------------ Investigating output/tsv/sra_accession-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:29:36 +0900 +timestamp: 2024-10-18 23:41:07 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-18 23:41:07 +0900) +latest-prerequisite time: 2024-10-18 23:41:07 +0900 ................................ -### Update TSV for sra_experiment-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_experiment-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-bioproject.tsv is newer than config/sra_experiment-bioproject/config.yaml # File output/tsv/sra_experiment-bioproject.tsv has no timestamp file -# File output/tsv/sra_experiment-bioproject.tsv is created 4.802959007135406 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_experiment-bioproject.tsv +# File output/tsv/sra_experiment-bioproject.tsv is created 6.3930719803841205 days ago (will be updated when >5 days) +## Update config/sra_experiment-bioproject/config.yaml => output/tsv/sra_experiment-bioproject.tsv +< 2024-10-18T23:41:07 sra_experiment-bioproject +togoid-config config/sra_experiment-bioproject update +# Success: output/tsv/sra_experiment-bioproject.tsv is updated +> 2024-10-18T23:44:42 sra_experiment-bioproject Rule for TSV (output/tsv/sra_experiment-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_experiment-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:33:11 +0900 +timestamp: 2024-10-18 23:44:42 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-18 23:44:42 +0900) +latest-prerequisite time: 2024-10-18 23:44:42 +0900 ................................ -### Update TSV for sra_experiment-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_experiment-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-biosample.tsv is newer than config/sra_experiment-biosample/config.yaml # File output/tsv/sra_experiment-biosample.tsv has no timestamp file -# File output/tsv/sra_experiment-biosample.tsv is created 4.800546969131447 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_experiment-biosample.tsv +# File output/tsv/sra_experiment-biosample.tsv is created 6.392879099532222 days ago (will be updated when >5 days) +## Update config/sra_experiment-biosample/config.yaml => output/tsv/sra_experiment-biosample.tsv +< 2024-10-18T23:44:42 sra_experiment-biosample +togoid-config config/sra_experiment-biosample update +# Success: output/tsv/sra_experiment-biosample.tsv is updated +> 2024-10-18T23:48:11 sra_experiment-biosample Rule for TSV (output/tsv/sra_experiment-biosample.tsv) ------------------------------ Investigating output/tsv/sra_experiment-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:36:40 +0900 +timestamp: 2024-10-18 23:48:11 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-18 23:48:11 +0900) +latest-prerequisite time: 2024-10-18 23:48:11 +0900 ................................ -### Update TSV for sra_experiment-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_experiment-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-sra_project.tsv is newer than config/sra_experiment-sra_project/config.yaml # File output/tsv/sra_experiment-sra_project.tsv has no timestamp file -# File output/tsv/sra_experiment-sra_project.tsv is created 4.798479100008588 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_experiment-sra_project.tsv +# File output/tsv/sra_experiment-sra_project.tsv is created 6.393139851159491 days ago (will be updated when >5 days) +## Update config/sra_experiment-sra_project/config.yaml => output/tsv/sra_experiment-sra_project.tsv +< 2024-10-18T23:48:11 sra_experiment-sra_project +togoid-config config/sra_experiment-sra_project update +# Success: output/tsv/sra_experiment-sra_project.tsv is updated +> 2024-10-18T23:51:12 sra_experiment-sra_project Rule for TSV (output/tsv/sra_experiment-sra_project.tsv) ------------------------------ Investigating output/tsv/sra_experiment-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:39:38 +0900 +timestamp: 2024-10-18 23:51:12 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-18 23:51:12 +0900) +latest-prerequisite time: 2024-10-18 23:51:12 +0900 ................................ -### Update TSV for sra_experiment-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_experiment-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_experiment-sra_sample.tsv is newer than config/sra_experiment-sra_sample/config.yaml # File output/tsv/sra_experiment-sra_sample.tsv has no timestamp file -# File output/tsv/sra_experiment-sra_sample.tsv is created 4.796442654589977 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_experiment-sra_sample.tsv +# File output/tsv/sra_experiment-sra_sample.tsv is created 6.393115514560244 days ago (will be updated when >5 days) +## Update config/sra_experiment-sra_sample/config.yaml => output/tsv/sra_experiment-sra_sample.tsv +< 2024-10-18T23:51:12 sra_experiment-sra_sample +togoid-config config/sra_experiment-sra_sample update +# Success: output/tsv/sra_experiment-sra_sample.tsv is updated +> 2024-10-18T23:54:08 sra_experiment-sra_sample Rule for TSV (output/tsv/sra_experiment-sra_sample.tsv) ------------------------------ Investigating output/tsv/sra_experiment-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:42:34 +0900 +timestamp: 2024-10-18 23:54:07 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-18 23:54:08 +0900) +latest-prerequisite time: 2024-10-18 23:54:08 +0900 ................................ -### Update TSV for sra_project-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_project-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_project-bioproject.tsv is newer than config/sra_project-bioproject/config.yaml # File output/tsv/sra_project-bioproject.tsv has no timestamp file -# File output/tsv/sra_project-bioproject.tsv is created 4.7956534291769675 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_project-bioproject.tsv +# File output/tsv/sra_project-bioproject.tsv is created 6.3943325808183795 days ago (will be updated when >5 days) +## Update config/sra_project-bioproject/config.yaml => output/tsv/sra_project-bioproject.tsv +< 2024-10-18T23:54:08 sra_project-bioproject +togoid-config config/sra_project-bioproject update +# Success: output/tsv/sra_project-bioproject.tsv is updated +> 2024-10-18T23:55:17 sra_project-bioproject Rule for TSV (output/tsv/sra_project-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_project-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:43:42 +0900 +timestamp: 2024-10-18 23:55:17 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-18 23:55:17 +0900) +latest-prerequisite time: 2024-10-18 23:55:17 +0900 ................................ -### Update TSV for sra_run-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_run-bioproject if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-bioproject.tsv is newer than config/sra_run-bioproject/config.yaml # File output/tsv/sra_run-bioproject.tsv has no timestamp file -# File output/tsv/sra_run-bioproject.tsv is created 4.79286202863853 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_run-bioproject.tsv +# File output/tsv/sra_run-bioproject.tsv is created 6.3921408920518985 days ago (will be updated when >5 days) +## Update config/sra_run-bioproject/config.yaml => output/tsv/sra_run-bioproject.tsv +< 2024-10-18T23:55:17 sra_run-bioproject +togoid-config config/sra_run-bioproject update +# Success: output/tsv/sra_run-bioproject.tsv is updated +> 2024-10-18T23:59:19 sra_run-bioproject Rule for TSV (output/tsv/sra_run-bioproject.tsv) ------------------------------ Investigating output/tsv/sra_run-bioproject.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:47:44 +0900 +timestamp: 2024-10-18 23:59:19 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-18 23:59:19 +0900) +latest-prerequisite time: 2024-10-18 23:59:19 +0900 ................................ -### Update TSV for sra_run-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_run-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-biosample.tsv is newer than config/sra_run-biosample/config.yaml # File output/tsv/sra_run-biosample.tsv has no timestamp file -# File output/tsv/sra_run-biosample.tsv is created 4.790148772118715 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_run-biosample.tsv +# File output/tsv/sra_run-biosample.tsv is created 6.392103013228727 days ago (will be updated when >5 days) +## Update config/sra_run-biosample/config.yaml => output/tsv/sra_run-biosample.tsv +< 2024-10-18T23:59:19 sra_run-biosample +togoid-config config/sra_run-biosample update +# Success: output/tsv/sra_run-biosample.tsv is updated +> 2024-10-19T00:03:14 sra_run-biosample Rule for TSV (output/tsv/sra_run-biosample.tsv) ------------------------------ Investigating output/tsv/sra_run-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:51:38 +0900 +timestamp: 2024-10-19 00:03:14 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-19 00:03:14 +0900) +latest-prerequisite time: 2024-10-19 00:03:14 +0900 ................................ -### Update TSV for sra_run-sra_experiment if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_run-sra_experiment if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_experiment.tsv is newer than config/sra_run-sra_experiment/config.yaml # File output/tsv/sra_run-sra_experiment.tsv has no timestamp file -# File output/tsv/sra_run-sra_experiment.tsv is created 4.788036758481122 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_run-sra_experiment.tsv +# File output/tsv/sra_run-sra_experiment.tsv is created 6.392404133104132 days ago (will be updated when >5 days) +## Update config/sra_run-sra_experiment/config.yaml => output/tsv/sra_run-sra_experiment.tsv +< 2024-10-19T00:03:14 sra_run-sra_experiment +togoid-config config/sra_run-sra_experiment update +# Success: output/tsv/sra_run-sra_experiment.tsv is updated +> 2024-10-19T00:06:19 sra_run-sra_experiment Rule for TSV (output/tsv/sra_run-sra_experiment.tsv) ------------------------------ Investigating output/tsv/sra_run-sra_experiment.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:54:40 +0900 +timestamp: 2024-10-19 00:06:19 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-19 00:06:19 +0900) +latest-prerequisite time: 2024-10-19 00:06:19 +0900 ................................ -### Update TSV for sra_run-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_run-sra_project if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_project.tsv is newer than config/sra_run-sra_project/config.yaml # File output/tsv/sra_run-sra_project.tsv has no timestamp file -# File output/tsv/sra_run-sra_project.tsv is created 4.785778702218356 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_run-sra_project.tsv +# File output/tsv/sra_run-sra_project.tsv is created 6.392185624166389 days ago (will be updated when >5 days) +## Update config/sra_run-sra_project/config.yaml => output/tsv/sra_run-sra_project.tsv +< 2024-10-19T00:06:19 sra_run-sra_project +togoid-config config/sra_run-sra_project update +# Success: output/tsv/sra_run-sra_project.tsv is updated +> 2024-10-19T00:09:36 sra_run-sra_project Rule for TSV (output/tsv/sra_run-sra_project.tsv) ------------------------------ Investigating output/tsv/sra_run-sra_project.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 02:57:56 +0900 +timestamp: 2024-10-19 00:09:36 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-19 00:09:36 +0900) +latest-prerequisite time: 2024-10-19 00:09:36 +0900 ................................ -### Update TSV for sra_run-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_run-sra_sample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_run-sra_sample.tsv is newer than config/sra_run-sra_sample/config.yaml # File output/tsv/sra_run-sra_sample.tsv has no timestamp file -# File output/tsv/sra_run-sra_sample.tsv is created 4.7835783429784255 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_run-sra_sample.tsv +# File output/tsv/sra_run-sra_sample.tsv is created 6.392020768705312 days ago (will be updated when >5 days) +## Update config/sra_run-sra_sample/config.yaml => output/tsv/sra_run-sra_sample.tsv +< 2024-10-19T00:09:36 sra_run-sra_sample +togoid-config config/sra_run-sra_sample update +# Success: output/tsv/sra_run-sra_sample.tsv is updated +> 2024-10-19T00:12:46 sra_run-sra_sample Rule for TSV (output/tsv/sra_run-sra_sample.tsv) ------------------------------ Investigating output/tsv/sra_run-sra_sample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 03:01:06 +0900 +timestamp: 2024-10-19 00:12:46 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-19 00:12:46 +0900) +latest-prerequisite time: 2024-10-19 00:12:46 +0900 ................................ -### Update TSV for sra_sample-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for sra_sample-biosample if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/sra_sample-biosample.tsv is newer than config/sra_sample-biosample/config.yaml # File output/tsv/sra_sample-biosample.tsv has no timestamp file -# File output/tsv/sra_sample-biosample.tsv is created 4.781416803759653 days ago (will be updated when >5 days) -# => Preserving output/tsv/sra_sample-biosample.tsv +# File output/tsv/sra_sample-biosample.tsv is created 6.3919281000433905 days ago (will be updated when >5 days) +## Update config/sra_sample-biosample/config.yaml => output/tsv/sra_sample-biosample.tsv +< 2024-10-19T00:12:46 sra_sample-biosample +togoid-config config/sra_sample-biosample update +# Success: output/tsv/sra_sample-biosample.tsv is updated +> 2024-10-19T00:15:54 sra_sample-biosample Rule for TSV (output/tsv/sra_sample-biosample.tsv) ------------------------------ Investigating output/tsv/sra_sample-biosample.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 03:04:12 +0900 +timestamp: 2024-10-19 00:15:54 +0900 pre-requisites: --output/tsv/ () ---prepare:sra (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--prepare:sra (2024-10-19 00:15:54 +0900) +latest-prerequisite time: 2024-10-19 00:15:54 +0900 ................................ ### Update TSV for swisslipids-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-chebi.tsv is newer than config/swisslipids-chebi/config.yaml # File output/tsv/swisslipids-chebi.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-chebi/config.yaml => output/tsv/swisslipids-chebi.tsv -< 2024-10-11T21:49:27 swisslipids-chebi +< 2024-10-19T00:15:54 swisslipids-chebi togoid-config config/swisslipids-chebi update # Success: output/tsv/swisslipids-chebi.tsv is updated -> 2024-10-11T21:49:42 swisslipids-chebi +> 2024-10-19T00:16:08 swisslipids-chebi Rule for TSV (output/tsv/swisslipids-chebi.tsv) ------------------------------ Investigating output/tsv/swisslipids-chebi.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:49:42 +0900 +timestamp: 2024-10-19 00:16:08 +0900 pre-requisites: --output/tsv/ () ---prepare:swisslipids (2024-10-11 21:49:42 +0900) -latest-prerequisite time: 2024-10-11 21:49:42 +0900 +--prepare:swisslipids (2024-10-19 00:16:08 +0900) +latest-prerequisite time: 2024-10-19 00:16:08 +0900 ................................ ### Update TSV for swisslipids-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-hmdb.tsv is newer than config/swisslipids-hmdb/config.yaml # File output/tsv/swisslipids-hmdb.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-hmdb/config.yaml => output/tsv/swisslipids-hmdb.tsv -< 2024-10-11T21:49:42 swisslipids-hmdb +< 2024-10-19T00:16:08 swisslipids-hmdb togoid-config config/swisslipids-hmdb update # Success: output/tsv/swisslipids-hmdb.tsv is updated -> 2024-10-11T21:49:56 swisslipids-hmdb +> 2024-10-19T00:16:22 swisslipids-hmdb Rule for TSV (output/tsv/swisslipids-hmdb.tsv) ------------------------------ Investigating output/tsv/swisslipids-hmdb.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:49:56 +0900 +timestamp: 2024-10-19 00:16:22 +0900 pre-requisites: --output/tsv/ () ---prepare:swisslipids (2024-10-11 21:49:56 +0900) -latest-prerequisite time: 2024-10-11 21:49:56 +0900 +--prepare:swisslipids (2024-10-19 00:16:22 +0900) +latest-prerequisite time: 2024-10-19 00:16:22 +0900 ................................ ### Update TSV for swisslipids-inchi_key if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/swisslipids-inchi_key.tsv is newer than config/swisslipids-inchi_key/config.yaml # File output/tsv/swisslipids-inchi_key.tsv is older than input/swisslipids/download.lock ## Update config/swisslipids-inchi_key/config.yaml => output/tsv/swisslipids-inchi_key.tsv -< 2024-10-11T21:49:56 swisslipids-inchi_key +< 2024-10-19T00:16:22 swisslipids-inchi_key togoid-config config/swisslipids-inchi_key update # Success: output/tsv/swisslipids-inchi_key.tsv is updated -> 2024-10-11T21:50:08 swisslipids-inchi_key +> 2024-10-19T00:16:34 swisslipids-inchi_key Rule for TSV (output/tsv/swisslipids-inchi_key.tsv) ------------------------------ Investigating output/tsv/swisslipids-inchi_key.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:50:08 +0900 +timestamp: 2024-10-19 00:16:34 +0900 pre-requisites: --output/tsv/ () ---prepare:swisslipids (2024-10-11 21:50:08 +0900) -latest-prerequisite time: 2024-10-11 21:50:08 +0900 +--prepare:swisslipids (2024-10-19 00:16:34 +0900) +latest-prerequisite time: 2024-10-19 00:16:34 +0900 ................................ ### Update TSV for taxonomy-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/taxonomy-pubmed.tsv is newer than config/taxonomy-pubmed/config.yaml # File output/tsv/taxonomy-pubmed.tsv is older than input/taxonomy/download.lock ## Update config/taxonomy-pubmed/config.yaml => output/tsv/taxonomy-pubmed.tsv -< 2024-10-11T21:50:08 taxonomy-pubmed +< 2024-10-19T00:16:34 taxonomy-pubmed togoid-config config/taxonomy-pubmed update awk: cmd. line:1: warning: escape sequence `\|' treated as plain `|' # Success: output/tsv/taxonomy-pubmed.tsv is updated -> 2024-10-11T21:50:09 taxonomy-pubmed +> 2024-10-19T00:16:35 taxonomy-pubmed Rule for TSV (output/tsv/taxonomy-pubmed.tsv) ------------------------------ Investigating output/tsv/taxonomy-pubmed.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:50:09 +0900 +timestamp: 2024-10-19 00:16:35 +0900 pre-requisites: --output/tsv/ () ---prepare:taxonomy (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:taxonomy (2024-10-19 00:16:35 +0900) +latest-prerequisite time: 2024-10-19 00:16:35 +0900 ................................ -### Update TSV for togovar-clinvar if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for togovar-clinvar if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-clinvar.tsv is newer than config/togovar-clinvar/config.yaml # File output/tsv/togovar-clinvar.tsv has no timestamp file -# File output/tsv/togovar-clinvar.tsv is created 4.780795777870359 days ago (will be updated when >5 days) -# => Preserving output/tsv/togovar-clinvar.tsv +# File output/tsv/togovar-clinvar.tsv is created 11.882487612230358 days ago (will be updated when >5 days) +## Update config/togovar-clinvar/config.yaml => output/tsv/togovar-clinvar.tsv +< 2024-10-19T00:16:35 togovar-clinvar +togoid-config config/togovar-clinvar update +# Success: output/tsv/togovar-clinvar.tsv is updated +> 2024-10-19T00:17:42 togovar-clinvar Rule for TSV (output/tsv/togovar-clinvar.tsv) ------------------------------ Investigating output/tsv/togovar-clinvar.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 03:05:48 +0900 +task needed: false +timestamp: 2024-10-19 00:17:42 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for togovar-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for togovar-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-dbsnp.tsv is newer than config/togovar-dbsnp/config.yaml # File output/tsv/togovar-dbsnp.tsv has no timestamp file -# File output/tsv/togovar-dbsnp.tsv is created 4.780370756280023 days ago (will be updated when >5 days) -# => Preserving output/tsv/togovar-dbsnp.tsv +# File output/tsv/togovar-dbsnp.tsv is created 11.882837464437754 days ago (will be updated when >5 days) +## Update config/togovar-dbsnp/config.yaml => output/tsv/togovar-dbsnp.tsv +< 2024-10-19T00:17:42 togovar-dbsnp +togoid-config config/togovar-dbsnp update +# Success: output/tsv/togovar-dbsnp.tsv is updated +> 2024-10-19T00:18:16 togovar-dbsnp Rule for TSV (output/tsv/togovar-dbsnp.tsv) ------------------------------ Investigating output/tsv/togovar-dbsnp.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 03:06:25 +0900 +task needed: false +timestamp: 2024-10-19 00:18:16 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for togovar-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for togovar-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ensembl_gene.tsv is newer than config/togovar-ensembl_gene/config.yaml # File output/tsv/togovar-ensembl_gene.tsv has no timestamp file -# File output/tsv/togovar-ensembl_gene.tsv is created 4.779948408225 days ago (will be updated when >5 days) -# => Preserving output/tsv/togovar-ensembl_gene.tsv +# File output/tsv/togovar-ensembl_gene.tsv is created 11.882809153306955 days ago (will be updated when >5 days) +## Update config/togovar-ensembl_gene/config.yaml => output/tsv/togovar-ensembl_gene.tsv +< 2024-10-19T00:18:16 togovar-ensembl_gene +togoid-config config/togovar-ensembl_gene update +# Success: output/tsv/togovar-ensembl_gene.tsv is updated +> 2024-10-19T00:18:54 togovar-ensembl_gene Rule for TSV (output/tsv/togovar-ensembl_gene.tsv) ------------------------------ Investigating output/tsv/togovar-ensembl_gene.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 03:07:01 +0900 +task needed: false +timestamp: 2024-10-19 00:18:54 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for togovar-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for togovar-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ensembl_transcript.tsv is newer than config/togovar-ensembl_transcript/config.yaml # File output/tsv/togovar-ensembl_transcript.tsv has no timestamp file -# File output/tsv/togovar-ensembl_transcript.tsv is created 4.778270718050601 days ago (will be updated when >5 days) -# => Preserving output/tsv/togovar-ensembl_transcript.tsv +# File output/tsv/togovar-ensembl_transcript.tsv is created 11.88156610611962 days ago (will be updated when >5 days) +## Update config/togovar-ensembl_transcript/config.yaml => output/tsv/togovar-ensembl_transcript.tsv +< 2024-10-19T00:18:54 togovar-ensembl_transcript +togoid-config config/togovar-ensembl_transcript update +# Success: output/tsv/togovar-ensembl_transcript.tsv is updated +> 2024-10-19T00:21:31 togovar-ensembl_transcript Rule for TSV (output/tsv/togovar-ensembl_transcript.tsv) ------------------------------ Investigating output/tsv/togovar-ensembl_transcript.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 03:09:26 +0900 +task needed: false +timestamp: 2024-10-19 00:21:31 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for togovar-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for togovar-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-hgnc.tsv is newer than config/togovar-hgnc/config.yaml # File output/tsv/togovar-hgnc.tsv has no timestamp file -# File output/tsv/togovar-hgnc.tsv is created 4.778001287864687 days ago (will be updated when >5 days) -# => Preserving output/tsv/togovar-hgnc.tsv +# File output/tsv/togovar-hgnc.tsv is created 11.883117809181678 days ago (will be updated when >5 days) +## Update config/togovar-hgnc/config.yaml => output/tsv/togovar-hgnc.tsv +< 2024-10-19T00:21:31 togovar-hgnc +togoid-config config/togovar-hgnc update +# Success: output/tsv/togovar-hgnc.tsv is updated +> 2024-10-19T00:21:56 togovar-hgnc Rule for TSV (output/tsv/togovar-hgnc.tsv) ------------------------------ Investigating output/tsv/togovar-hgnc.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 03:09:49 +0900 +task needed: false +timestamp: 2024-10-19 00:21:56 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for togovar-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for togovar-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-ncbigene.tsv is newer than config/togovar-ncbigene/config.yaml # File output/tsv/togovar-ncbigene.tsv has no timestamp file -# File output/tsv/togovar-ncbigene.tsv is created 4.777736695333924 days ago (will be updated when >5 days) -# => Preserving output/tsv/togovar-ncbigene.tsv +# File output/tsv/togovar-ncbigene.tsv is created 11.883138601933716 days ago (will be updated when >5 days) +## Update config/togovar-ncbigene/config.yaml => output/tsv/togovar-ncbigene.tsv +< 2024-10-19T00:21:56 togovar-ncbigene +togoid-config config/togovar-ncbigene update +# Success: output/tsv/togovar-ncbigene.tsv is updated +> 2024-10-19T00:22:19 togovar-ncbigene Rule for TSV (output/tsv/togovar-ncbigene.tsv) ------------------------------ Investigating output/tsv/togovar-ncbigene.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 03:10:12 +0900 +task needed: false +timestamp: 2024-10-19 00:22:19 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for togovar-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for togovar-pubmed if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-pubmed.tsv is newer than config/togovar-pubmed/config.yaml # File output/tsv/togovar-pubmed.tsv has no timestamp file -# File output/tsv/togovar-pubmed.tsv is created 4.77772785699294 days ago (will be updated when >5 days) -# => Preserving output/tsv/togovar-pubmed.tsv +# File output/tsv/togovar-pubmed.tsv is created 11.883397424305718 days ago (will be updated when >5 days) +## Update config/togovar-pubmed/config.yaml => output/tsv/togovar-pubmed.tsv +< 2024-10-19T00:22:19 togovar-pubmed +togoid-config config/togovar-pubmed update +# Success: output/tsv/togovar-pubmed.tsv is updated +> 2024-10-19T00:22:19 togovar-pubmed Rule for TSV (output/tsv/togovar-pubmed.tsv) ------------------------------ Investigating output/tsv/togovar-pubmed.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 03:10:13 +0900 +task needed: false +timestamp: 2024-10-19 00:22:19 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for togovar-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for togovar-refseq_rna if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/togovar-refseq_rna.tsv is newer than config/togovar-refseq_rna/config.yaml # File output/tsv/togovar-refseq_rna.tsv has no timestamp file -# File output/tsv/togovar-refseq_rna.tsv is created 4.7767610950579975 days ago (will be updated when >5 days) -# => Preserving output/tsv/togovar-refseq_rna.tsv +# File output/tsv/togovar-refseq_rna.tsv is created 11.882439278388137 days ago (will be updated when >5 days) +## Update config/togovar-refseq_rna/config.yaml => output/tsv/togovar-refseq_rna.tsv +< 2024-10-19T00:22:19 togovar-refseq_rna +togoid-config config/togovar-refseq_rna update +# Success: output/tsv/togovar-refseq_rna.tsv is updated +> 2024-10-19T00:23:54 togovar-refseq_rna Rule for TSV (output/tsv/togovar-refseq_rna.tsv) ------------------------------ Investigating output/tsv/togovar-refseq_rna.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 03:11:37 +0900 +task needed: false +timestamp: 2024-10-19 00:23:54 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for uberon-ncit_tissue if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uberon-ncit_tissue if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uberon-ncit_tissue.tsv is newer than config/uberon-ncit_tissue/config.yaml # File output/tsv/uberon-ncit_tissue.tsv has no timestamp file -# File output/tsv/uberon-ncit_tissue.tsv is created 4.776740011093785 days ago (will be updated when >5 days) -# => Preserving output/tsv/uberon-ncit_tissue.tsv +# File output/tsv/uberon-ncit_tissue.tsv is created 11.883508161613877 days ago (will be updated when >5 days) +## Update config/uberon-ncit_tissue/config.yaml => output/tsv/uberon-ncit_tissue.tsv +< 2024-10-19T00:23:54 uberon-ncit_tissue +togoid-config config/uberon-ncit_tissue update +# Success: output/tsv/uberon-ncit_tissue.tsv is updated +> 2024-10-19T00:23:56 uberon-ncit_tissue Rule for TSV (output/tsv/uberon-ncit_tissue.tsv) ------------------------------ Investigating output/tsv/uberon-ncit_tissue.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 03:11:38 +0900 +task needed: false +timestamp: 2024-10-19 00:23:56 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for uniprot-chembl_target if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4842,8 +5484,8 @@ task needed: true timestamp: 2024-10-07 03:49:45 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-dbsnp if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4858,8 +5500,8 @@ task needed: true timestamp: 2024-10-07 03:50:14 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-ec if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4874,8 +5516,8 @@ task needed: true timestamp: 2024-10-07 04:41:06 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-ensembl_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4890,8 +5532,8 @@ task needed: true timestamp: 2024-10-07 05:28:14 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-ensembl_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4906,8 +5548,8 @@ task needed: true timestamp: 2024-10-07 06:14:28 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-ensembl_transcript if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4922,8 +5564,8 @@ task needed: true timestamp: 2024-10-07 07:01:01 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-go if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4938,8 +5580,8 @@ task needed: true timestamp: 2024-10-07 07:19:03 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-hgnc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4954,8 +5596,8 @@ task needed: true timestamp: 2024-10-07 07:57:17 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4970,8 +5612,8 @@ task needed: true timestamp: 2024-10-07 08:43:29 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-intact if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -4986,8 +5628,8 @@ task needed: true timestamp: 2024-10-07 08:45:13 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5002,8 +5644,8 @@ task needed: true timestamp: 2024-10-07 09:23:48 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-oma_group if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5018,8 +5660,8 @@ task needed: true timestamp: 2024-10-07 10:02:59 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-omim_gene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5034,8 +5676,8 @@ task needed: true timestamp: 2024-10-07 10:03:07 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-omim_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5050,8 +5692,8 @@ task needed: true timestamp: 2024-10-07 10:03:10 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-orphanet_phenotype if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5066,8 +5708,8 @@ task needed: true timestamp: 2024-10-07 10:49:35 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-pdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5082,8 +5724,8 @@ task needed: true timestamp: 2024-10-07 11:28:15 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-reactome_pathway if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5098,8 +5740,8 @@ task needed: true timestamp: 2024-10-07 12:14:19 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-refseq_protein if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5114,8 +5756,8 @@ task needed: true timestamp: 2024-10-07 12:53:40 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5130,8 +5772,8 @@ task needed: true timestamp: 2024-10-07 13:26:44 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ ### Update TSV for uniprot-uniprot_mnemonic if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false @@ -5146,71 +5788,83 @@ task needed: true timestamp: 2024-10-07 14:21:31 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:56 +0900) +latest-prerequisite time: 2024-10-19 00:23:56 +0900 ................................ -### Update TSV for uniprot_reference_proteome-assembly_insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot_reference_proteome-assembly_insdc if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is newer than config/uniprot_reference_proteome-assembly_insdc/config.yaml # File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is created 4.311538693374328 days ago (will be updated when >5 days) -# => Preserving output/tsv/uniprot_reference_proteome-assembly_insdc.tsv +# File output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is created 11.418331425665059 days ago (will be updated when >5 days) +## Update config/uniprot_reference_proteome-assembly_insdc/config.yaml => output/tsv/uniprot_reference_proteome-assembly_insdc.tsv +< 2024-10-19T00:23:56 uniprot_reference_proteome-assembly_insdc +togoid-config config/uniprot_reference_proteome-assembly_insdc update +# Success: output/tsv/uniprot_reference_proteome-assembly_insdc.tsv is updated +> 2024-10-19T00:23:57 uniprot_reference_proteome-assembly_insdc Rule for TSV (output/tsv/uniprot_reference_proteome-assembly_insdc.tsv) ------------------------------ Investigating output/tsv/uniprot_reference_proteome-assembly_insdc.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 14:21:32 +0900 +timestamp: 2024-10-19 00:23:57 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:57 +0900) +latest-prerequisite time: 2024-10-19 00:23:57 +0900 ................................ -### Update TSV for uniprot_reference_proteome-assembly_refseq if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot_reference_proteome-assembly_refseq if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is newer than config/uniprot_reference_proteome-assembly_refseq/config.yaml # File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is created 4.3115317062048035 days ago (will be updated when >5 days) -# => Preserving output/tsv/uniprot_reference_proteome-assembly_refseq.tsv +# File output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is created 11.418333452415649 days ago (will be updated when >5 days) +## Update config/uniprot_reference_proteome-assembly_refseq/config.yaml => output/tsv/uniprot_reference_proteome-assembly_refseq.tsv +< 2024-10-19T00:23:57 uniprot_reference_proteome-assembly_refseq +togoid-config config/uniprot_reference_proteome-assembly_refseq update +# Success: output/tsv/uniprot_reference_proteome-assembly_refseq.tsv is updated +> 2024-10-19T00:23:57 uniprot_reference_proteome-assembly_refseq Rule for TSV (output/tsv/uniprot_reference_proteome-assembly_refseq.tsv) ------------------------------ Investigating output/tsv/uniprot_reference_proteome-assembly_refseq.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 14:21:33 +0900 +timestamp: 2024-10-19 00:23:57 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:57 +0900) +latest-prerequisite time: 2024-10-19 00:23:57 +0900 ................................ -### Update TSV for uniprot_reference_proteome-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for uniprot_reference_proteome-taxonomy if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/uniprot_reference_proteome-taxonomy.tsv is newer than config/uniprot_reference_proteome-taxonomy/config.yaml # File output/tsv/uniprot_reference_proteome-taxonomy.tsv has no timestamp file -# File output/tsv/uniprot_reference_proteome-taxonomy.tsv is created 4.311525367343067 days ago (will be updated when >5 days) -# => Preserving output/tsv/uniprot_reference_proteome-taxonomy.tsv +# File output/tsv/uniprot_reference_proteome-taxonomy.tsv is created 11.418333236499873 days ago (will be updated when >5 days) +## Update config/uniprot_reference_proteome-taxonomy/config.yaml => output/tsv/uniprot_reference_proteome-taxonomy.tsv +< 2024-10-19T00:23:57 uniprot_reference_proteome-taxonomy +togoid-config config/uniprot_reference_proteome-taxonomy update +# Success: output/tsv/uniprot_reference_proteome-taxonomy.tsv is updated +> 2024-10-19T00:23:58 uniprot_reference_proteome-taxonomy Rule for TSV (output/tsv/uniprot_reference_proteome-taxonomy.tsv) ------------------------------ Investigating output/tsv/uniprot_reference_proteome-taxonomy.tsv class: Rake::FileTask task needed: true -timestamp: 2024-10-07 14:21:33 +0900 +timestamp: 2024-10-19 00:23:58 +0900 pre-requisites: --output/tsv/ () ---prepare:uniprot (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 +--prepare:uniprot (2024-10-19 00:23:58 +0900) +latest-prerequisite time: 2024-10-19 00:23:58 +0900 ................................ ### Update TSV for wikipathways-chebi if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-chebi.tsv is newer than config/wikipathways-chebi/config.yaml # File output/tsv/wikipathways-chebi.tsv has no timestamp file -# File output/tsv/wikipathways-chebi.tsv is created 216.9203439520037 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-chebi.tsv is created 224.02715825204905 days ago (will be updated when >5 days) ## Update config/wikipathways-chebi/config.yaml => output/tsv/wikipathways-chebi.tsv -< 2024-10-11T21:50:09 wikipathways-chebi +< 2024-10-19T00:23:58 wikipathways-chebi togoid-config config/wikipathways-chebi update -# Error: output/tsv/wikipathways-chebi.tsv new file size per old 72255 / 148433 = 0.48678528359596585 < 0.5 +# Error: output/tsv/wikipathways-chebi.tsv new file size per old 73351 / 148433 = 0.49416908638914525 < 0.5 # Failure: output/tsv/wikipathways-chebi.tsv is not updated -> 2024-10-11T21:50:13 wikipathways-chebi +> 2024-10-19T00:24:02 wikipathways-chebi Rule for TSV (output/tsv/wikipathways-chebi.tsv) ------------------------------ Investigating output/tsv/wikipathways-chebi.tsv @@ -5219,88 +5873,104 @@ task needed: true timestamp: 2024-03-08 23:44:51 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for wikipathways-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for wikipathways-doid if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-doid.tsv is newer than config/wikipathways-doid/config.yaml # File output/tsv/wikipathways-doid.tsv has no timestamp file -# File output/tsv/wikipathways-doid.tsv is created 4.311506663820162 days ago (will be updated when >5 days) -# => Preserving output/tsv/wikipathways-doid.tsv +# File output/tsv/wikipathways-doid.tsv is created 11.418320362276608 days ago (will be updated when >5 days) +## Update config/wikipathways-doid/config.yaml => output/tsv/wikipathways-doid.tsv +< 2024-10-19T00:24:02 wikipathways-doid +togoid-config config/wikipathways-doid update +# Success: output/tsv/wikipathways-doid.tsv is updated +> 2024-10-19T00:24:04 wikipathways-doid Rule for TSV (output/tsv/wikipathways-doid.tsv) ------------------------------ Investigating output/tsv/wikipathways-doid.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 14:21:39 +0900 +task needed: false +timestamp: 2024-10-19 00:24:04 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for wikipathways-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for wikipathways-hmdb if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-hmdb.tsv is newer than config/wikipathways-hmdb/config.yaml # File output/tsv/wikipathways-hmdb.tsv has no timestamp file -# File output/tsv/wikipathways-hmdb.tsv is created 4.311481341818276 days ago (will be updated when >5 days) -# => Preserving output/tsv/wikipathways-hmdb.tsv +# File output/tsv/wikipathways-hmdb.tsv is created 11.41831746302544 days ago (will be updated when >5 days) +## Update config/wikipathways-hmdb/config.yaml => output/tsv/wikipathways-hmdb.tsv +< 2024-10-19T00:24:04 wikipathways-hmdb +togoid-config config/wikipathways-hmdb update +# Success: output/tsv/wikipathways-hmdb.tsv is updated +> 2024-10-19T00:24:06 wikipathways-hmdb Rule for TSV (output/tsv/wikipathways-hmdb.tsv) ------------------------------ Investigating output/tsv/wikipathways-hmdb.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 14:21:41 +0900 +task needed: false +timestamp: 2024-10-19 00:24:06 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for wikipathways-lipidmaps if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for wikipathways-lipidmaps if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-lipidmaps.tsv is newer than config/wikipathways-lipidmaps/config.yaml # File output/tsv/wikipathways-lipidmaps.tsv has no timestamp file -# File output/tsv/wikipathways-lipidmaps.tsv is created 4.311461359110845 days ago (will be updated when >5 days) -# => Preserving output/tsv/wikipathways-lipidmaps.tsv +# File output/tsv/wikipathways-lipidmaps.tsv is created 11.418321403936758 days ago (will be updated when >5 days) +## Update config/wikipathways-lipidmaps/config.yaml => output/tsv/wikipathways-lipidmaps.tsv +< 2024-10-19T00:24:06 wikipathways-lipidmaps +togoid-config config/wikipathways-lipidmaps update +# Success: output/tsv/wikipathways-lipidmaps.tsv is updated +> 2024-10-19T00:24:08 wikipathways-lipidmaps Rule for TSV (output/tsv/wikipathways-lipidmaps.tsv) ------------------------------ Investigating output/tsv/wikipathways-lipidmaps.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 14:21:43 +0900 +task needed: false +timestamp: 2024-10-19 00:24:08 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ -### Update TSV for wikipathways-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp false +### Update TSV for wikipathways-ncbigene if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-ncbigene.tsv is newer than config/wikipathways-ncbigene/config.yaml # File output/tsv/wikipathways-ncbigene.tsv has no timestamp file -# File output/tsv/wikipathways-ncbigene.tsv is created 4.311307520878808 days ago (will be updated when >5 days) -# => Preserving output/tsv/wikipathways-ncbigene.tsv +# File output/tsv/wikipathways-ncbigene.tsv is created 11.418188927668599 days ago (will be updated when >5 days) +## Update config/wikipathways-ncbigene/config.yaml => output/tsv/wikipathways-ncbigene.tsv +< 2024-10-19T00:24:08 wikipathways-ncbigene +togoid-config config/wikipathways-ncbigene update +# Success: output/tsv/wikipathways-ncbigene.tsv is updated +> 2024-10-19T00:24:21 wikipathways-ncbigene Rule for TSV (output/tsv/wikipathways-ncbigene.tsv) ------------------------------ Investigating output/tsv/wikipathways-ncbigene.tsv class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 14:21:56 +0900 +task needed: false +timestamp: 2024-10-19 00:24:21 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TSV for wikipathways-uniprot if check_tsv_filesize false or check_config_timestamp false or check_tsv_timestamp true # File output/tsv/wikipathways-uniprot.tsv is newer than config/wikipathways-uniprot/config.yaml # File output/tsv/wikipathways-uniprot.tsv has no timestamp file -# File output/tsv/wikipathways-uniprot.tsv is created 216.91997184200397 days ago (will be updated when >5 days) +# File output/tsv/wikipathways-uniprot.tsv is created 224.02701098764805 days ago (will be updated when >5 days) ## Update config/wikipathways-uniprot/config.yaml => output/tsv/wikipathways-uniprot.tsv -< 2024-10-11T21:50:13 wikipathways-uniprot +< 2024-10-19T00:24:21 wikipathways-uniprot togoid-config config/wikipathways-uniprot update -# Error: output/tsv/wikipathways-uniprot.tsv new file size per old 59610 / 470542 = 0.12668369667319815 < 0.5 +# Error: output/tsv/wikipathways-uniprot.tsv new file size per old 59666 / 470542 = 0.12680270836609697 < 0.5 # Failure: output/tsv/wikipathways-uniprot.tsv is not updated -> 2024-10-11T21:50:17 wikipathways-uniprot +> 2024-10-19T00:24:25 wikipathways-uniprot Rule for TSV (output/tsv/wikipathways-uniprot.tsv) ------------------------------ Investigating output/tsv/wikipathways-uniprot.tsv @@ -5309,70 +5979,70 @@ task needed: true timestamp: 2024-03-08 23:45:28 +0900 pre-requisites: --output/tsv/ () ---input/update.txt (2024-10-11 20:11:01 +0900) -latest-prerequisite time: 2024-10-11 20:11:01 +0900 +--input/update.txt (2024-10-18 20:16:23 +0900) +latest-prerequisite time: 2024-10-18 20:16:23 +0900 ................................ ### Update TTL for affy_probeset-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/affy_probeset-ncbigene.ttl is older than output/tsv/affy_probeset-ncbigene.tsv ## Convert output/tsv/affy_probeset-ncbigene.tsv => output/ttl/affy_probeset-ncbigene.ttl -< 2024-10-11T21:50:17 affy_probeset-ncbigene +< 2024-10-19T00:24:25 affy_probeset-ncbigene togoid-config config/affy_probeset-ncbigene convert -> 2024-10-11T21:50:18 affy_probeset-ncbigene +> 2024-10-19T00:24:26 affy_probeset-ncbigene ### Update TTL for assembly_insdc-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-bioproject.ttl is older than output/tsv/assembly_insdc-bioproject.tsv ## Convert output/tsv/assembly_insdc-bioproject.tsv => output/ttl/assembly_insdc-bioproject.ttl -< 2024-10-11T21:50:18 assembly_insdc-bioproject +< 2024-10-19T00:24:26 assembly_insdc-bioproject togoid-config config/assembly_insdc-bioproject convert -> 2024-10-11T21:50:36 assembly_insdc-bioproject +> 2024-10-19T00:24:46 assembly_insdc-bioproject ### Update TTL for assembly_insdc-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-biosample.ttl is older than output/tsv/assembly_insdc-biosample.tsv ## Convert output/tsv/assembly_insdc-biosample.tsv => output/ttl/assembly_insdc-biosample.ttl -< 2024-10-11T21:50:36 assembly_insdc-biosample +< 2024-10-19T00:24:46 assembly_insdc-biosample togoid-config config/assembly_insdc-biosample convert -> 2024-10-11T21:50:55 assembly_insdc-biosample +> 2024-10-19T00:25:05 assembly_insdc-biosample ### Update TTL for assembly_insdc-insdc_master if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/assembly_insdc-insdc_master.ttl is older than output/tsv/assembly_insdc-insdc_master.tsv ## Convert output/tsv/assembly_insdc-insdc_master.tsv => output/ttl/assembly_insdc-insdc_master.ttl -< 2024-10-11T21:50:55 assembly_insdc-insdc_master +< 2024-10-19T00:25:05 assembly_insdc-insdc_master togoid-config config/assembly_insdc-insdc_master convert -> 2024-10-11T21:51:15 assembly_insdc-insdc_master +> 2024-10-19T00:25:24 assembly_insdc-insdc_master ### Update TTL for bioproject-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-biosample.ttl is older than output/tsv/bioproject-biosample.tsv ## Convert output/tsv/bioproject-biosample.tsv => output/ttl/bioproject-biosample.ttl -< 2024-10-11T21:51:15 bioproject-biosample +< 2024-10-19T00:25:24 bioproject-biosample togoid-config config/bioproject-biosample convert -> 2024-10-11T21:51:35 bioproject-biosample +> 2024-10-19T00:25:46 bioproject-biosample ### Update TTL for bioproject-geo_series if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-geo_series.ttl is older than output/tsv/bioproject-geo_series.tsv ## Convert output/tsv/bioproject-geo_series.tsv => output/ttl/bioproject-geo_series.ttl -< 2024-10-11T21:51:35 bioproject-geo_series +< 2024-10-19T00:25:46 bioproject-geo_series togoid-config config/bioproject-geo_series convert -> 2024-10-11T21:51:37 bioproject-geo_series +> 2024-10-19T00:25:48 bioproject-geo_series ### Update TTL for bioproject-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject-pubmed.ttl is older than output/tsv/bioproject-pubmed.tsv ## Convert output/tsv/bioproject-pubmed.tsv => output/ttl/bioproject-pubmed.ttl -< 2024-10-11T21:51:37 bioproject-pubmed +< 2024-10-19T00:25:48 bioproject-pubmed togoid-config config/bioproject-pubmed convert -> 2024-10-11T21:51:39 bioproject-pubmed +> 2024-10-19T00:25:50 bioproject-pubmed ### Update TTL for bioproject_umbrella-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/bioproject_umbrella-bioproject.ttl is older than output/tsv/bioproject_umbrella-bioproject.tsv ## Convert output/tsv/bioproject_umbrella-bioproject.tsv => output/ttl/bioproject_umbrella-bioproject.ttl -< 2024-10-11T21:51:39 bioproject_umbrella-bioproject +< 2024-10-19T00:25:50 bioproject_umbrella-bioproject togoid-config config/bioproject_umbrella-bioproject convert -> 2024-10-11T21:51:40 bioproject_umbrella-bioproject +> 2024-10-19T00:25:51 bioproject_umbrella-bioproject ### Update TTL for biosample-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/biosample-bioproject.ttl is older than output/tsv/biosample-bioproject.tsv ## Convert output/tsv/biosample-bioproject.tsv => output/ttl/biosample-bioproject.ttl -< 2024-10-11T21:51:40 biosample-bioproject +< 2024-10-19T00:25:51 biosample-bioproject togoid-config config/biosample-bioproject convert -> 2024-10-11T21:54:25 biosample-bioproject +> 2024-10-19T00:28:37 biosample-bioproject ### Update TTL for biosample-geo_sample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/biosample-geo_sample.ttl is older than output/tsv/biosample-geo_sample.tsv ## Convert output/tsv/biosample-geo_sample.tsv => output/ttl/biosample-geo_sample.ttl -< 2024-10-11T21:54:25 biosample-geo_sample +< 2024-10-19T00:28:37 biosample-geo_sample togoid-config config/biosample-geo_sample convert -> 2024-10-11T21:55:44 biosample-geo_sample +> 2024-10-19T00:29:51 biosample-geo_sample ### Update TTL for cellosaurus-ncit_disease if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/cellosaurus-ncit_disease.ttl is newer than output/tsv/cellosaurus-ncit_disease.tsv # => Preserving output/ttl/cellosaurus-ncit_disease.ttl @@ -5382,162 +6052,162 @@ togoid-config config/biosample-geo_sample convert ### Update TTL for chebi-glytoucan if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chebi-glytoucan.ttl is older than output/tsv/chebi-glytoucan.tsv ## Convert output/tsv/chebi-glytoucan.tsv => output/ttl/chebi-glytoucan.ttl -< 2024-10-11T21:55:44 chebi-glytoucan +< 2024-10-19T00:29:51 chebi-glytoucan togoid-config config/chebi-glytoucan convert -> 2024-10-11T21:55:44 chebi-glytoucan +> 2024-10-19T00:29:52 chebi-glytoucan ### Update TTL for chebi-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chebi-inchi_key.ttl is older than output/tsv/chebi-inchi_key.tsv ## Convert output/tsv/chebi-inchi_key.tsv => output/ttl/chebi-inchi_key.ttl -< 2024-10-11T21:55:44 chebi-inchi_key +< 2024-10-19T00:29:52 chebi-inchi_key togoid-config config/chebi-inchi_key convert -> 2024-10-11T21:55:46 chebi-inchi_key +> 2024-10-19T00:29:54 chebi-inchi_key ### Update TTL for chembl_compound-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-chebi.ttl is older than output/tsv/chembl_compound-chebi.tsv ## Convert output/tsv/chembl_compound-chebi.tsv => output/ttl/chembl_compound-chebi.ttl -< 2024-10-11T21:55:46 chembl_compound-chebi +< 2024-10-19T00:29:54 chembl_compound-chebi togoid-config config/chembl_compound-chebi convert -> 2024-10-11T21:55:47 chembl_compound-chebi +> 2024-10-19T00:29:54 chembl_compound-chebi ### Update TTL for chembl_compound-chembl_target if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-chembl_target.ttl is older than output/tsv/chembl_compound-chembl_target.tsv ## Convert output/tsv/chembl_compound-chembl_target.tsv => output/ttl/chembl_compound-chembl_target.ttl -< 2024-10-11T21:55:47 chembl_compound-chembl_target +< 2024-10-19T00:29:54 chembl_compound-chembl_target togoid-config config/chembl_compound-chembl_target convert -> 2024-10-11T21:56:16 chembl_compound-chembl_target +> 2024-10-19T00:30:23 chembl_compound-chembl_target ### Update TTL for chembl_compound-drugbank if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-drugbank.ttl is older than output/tsv/chembl_compound-drugbank.tsv ## Convert output/tsv/chembl_compound-drugbank.tsv => output/ttl/chembl_compound-drugbank.ttl -< 2024-10-11T21:56:16 chembl_compound-drugbank +< 2024-10-19T00:30:23 chembl_compound-drugbank togoid-config config/chembl_compound-drugbank convert -> 2024-10-11T21:56:16 chembl_compound-drugbank +> 2024-10-19T00:30:23 chembl_compound-drugbank ### Update TTL for chembl_compound-hmdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-hmdb.ttl is older than output/tsv/chembl_compound-hmdb.tsv ## Convert output/tsv/chembl_compound-hmdb.tsv => output/ttl/chembl_compound-hmdb.ttl -< 2024-10-11T21:56:16 chembl_compound-hmdb +< 2024-10-19T00:30:23 chembl_compound-hmdb togoid-config config/chembl_compound-hmdb convert -> 2024-10-11T21:56:16 chembl_compound-hmdb +> 2024-10-19T00:30:24 chembl_compound-hmdb ### Update TTL for chembl_compound-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-inchi_key.ttl is older than output/tsv/chembl_compound-inchi_key.tsv ## Convert output/tsv/chembl_compound-inchi_key.tsv => output/ttl/chembl_compound-inchi_key.ttl -< 2024-10-11T21:56:16 chembl_compound-inchi_key +< 2024-10-19T00:30:24 chembl_compound-inchi_key togoid-config config/chembl_compound-inchi_key convert -> 2024-10-11T21:56:35 chembl_compound-inchi_key +> 2024-10-19T00:30:43 chembl_compound-inchi_key ### Update TTL for chembl_compound-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-mesh.ttl is older than output/tsv/chembl_compound-mesh.tsv ## Convert output/tsv/chembl_compound-mesh.tsv => output/ttl/chembl_compound-mesh.ttl -< 2024-10-11T21:56:35 chembl_compound-mesh +< 2024-10-19T00:30:43 chembl_compound-mesh togoid-config config/chembl_compound-mesh convert -> 2024-10-11T21:56:35 chembl_compound-mesh +> 2024-10-19T00:30:44 chembl_compound-mesh ### Update TTL for chembl_compound-pdb_ccd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pdb_ccd.ttl is older than output/tsv/chembl_compound-pdb_ccd.tsv ## Convert output/tsv/chembl_compound-pdb_ccd.tsv => output/ttl/chembl_compound-pdb_ccd.ttl -< 2024-10-11T21:56:35 chembl_compound-pdb_ccd +< 2024-10-19T00:30:44 chembl_compound-pdb_ccd togoid-config config/chembl_compound-pdb_ccd convert -> 2024-10-11T21:56:36 chembl_compound-pdb_ccd +> 2024-10-19T00:30:44 chembl_compound-pdb_ccd ### Update TTL for chembl_compound-pubchem_compound if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubchem_compound.ttl is older than output/tsv/chembl_compound-pubchem_compound.tsv ## Convert output/tsv/chembl_compound-pubchem_compound.tsv => output/ttl/chembl_compound-pubchem_compound.ttl -< 2024-10-11T21:56:36 chembl_compound-pubchem_compound +< 2024-10-19T00:30:44 chembl_compound-pubchem_compound togoid-config config/chembl_compound-pubchem_compound convert -> 2024-10-11T21:56:52 chembl_compound-pubchem_compound +> 2024-10-19T00:31:00 chembl_compound-pubchem_compound ### Update TTL for chembl_compound-pubchem_substance if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubchem_substance.ttl is older than output/tsv/chembl_compound-pubchem_substance.tsv ## Convert output/tsv/chembl_compound-pubchem_substance.tsv => output/ttl/chembl_compound-pubchem_substance.ttl -< 2024-10-11T21:56:52 chembl_compound-pubchem_substance +< 2024-10-19T00:31:00 chembl_compound-pubchem_substance togoid-config config/chembl_compound-pubchem_substance convert -> 2024-10-11T21:56:55 chembl_compound-pubchem_substance +> 2024-10-19T00:31:04 chembl_compound-pubchem_substance ### Update TTL for chembl_compound-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_compound-pubmed.ttl is older than output/tsv/chembl_compound-pubmed.tsv ## Convert output/tsv/chembl_compound-pubmed.tsv => output/ttl/chembl_compound-pubmed.ttl -< 2024-10-11T21:56:55 chembl_compound-pubmed +< 2024-10-19T00:31:04 chembl_compound-pubmed togoid-config config/chembl_compound-pubmed convert -> 2024-10-11T21:57:06 chembl_compound-pubmed +> 2024-10-19T00:31:16 chembl_compound-pubmed ### Update TTL for chembl_target-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/chembl_target-ensembl_gene.ttl is newer than output/tsv/chembl_target-ensembl_gene.tsv # => Preserving output/ttl/chembl_target-ensembl_gene.ttl ### Update TTL for chembl_target-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-go.ttl is older than output/tsv/chembl_target-go.tsv ## Convert output/tsv/chembl_target-go.tsv => output/ttl/chembl_target-go.ttl -< 2024-10-11T21:57:06 chembl_target-go +< 2024-10-19T00:31:16 chembl_target-go togoid-config config/chembl_target-go convert -> 2024-10-11T21:57:07 chembl_target-go +> 2024-10-19T00:31:16 chembl_target-go ### Update TTL for chembl_target-interpro if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-interpro.ttl is older than output/tsv/chembl_target-interpro.tsv ## Convert output/tsv/chembl_target-interpro.tsv => output/ttl/chembl_target-interpro.ttl -< 2024-10-11T21:57:07 chembl_target-interpro +< 2024-10-19T00:31:16 chembl_target-interpro togoid-config config/chembl_target-interpro convert -> 2024-10-11T21:57:07 chembl_target-interpro +> 2024-10-19T00:31:16 chembl_target-interpro ### Update TTL for chembl_target-pdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-pdb.ttl is older than output/tsv/chembl_target-pdb.tsv ## Convert output/tsv/chembl_target-pdb.tsv => output/ttl/chembl_target-pdb.ttl -< 2024-10-11T21:57:07 chembl_target-pdb +< 2024-10-19T00:31:16 chembl_target-pdb togoid-config config/chembl_target-pdb convert -> 2024-10-11T21:57:07 chembl_target-pdb +> 2024-10-19T00:31:17 chembl_target-pdb ### Update TTL for chembl_target-pfam if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-pfam.ttl is older than output/tsv/chembl_target-pfam.tsv ## Convert output/tsv/chembl_target-pfam.tsv => output/ttl/chembl_target-pfam.ttl -< 2024-10-11T21:57:07 chembl_target-pfam +< 2024-10-19T00:31:17 chembl_target-pfam togoid-config config/chembl_target-pfam convert -> 2024-10-11T21:57:08 chembl_target-pfam +> 2024-10-19T00:31:17 chembl_target-pfam ### Update TTL for chembl_target-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-reactome_pathway.ttl is older than output/tsv/chembl_target-reactome_pathway.tsv ## Convert output/tsv/chembl_target-reactome_pathway.tsv => output/ttl/chembl_target-reactome_pathway.ttl -< 2024-10-11T21:57:08 chembl_target-reactome_pathway +< 2024-10-19T00:31:17 chembl_target-reactome_pathway togoid-config config/chembl_target-reactome_pathway convert -> 2024-10-11T21:57:08 chembl_target-reactome_pathway +> 2024-10-19T00:31:17 chembl_target-reactome_pathway ### Update TTL for chembl_target-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/chembl_target-uniprot.ttl is older than output/tsv/chembl_target-uniprot.tsv ## Convert output/tsv/chembl_target-uniprot.tsv => output/ttl/chembl_target-uniprot.ttl -< 2024-10-11T21:57:08 chembl_target-uniprot +< 2024-10-19T00:31:17 chembl_target-uniprot togoid-config config/chembl_target-uniprot convert -> 2024-10-11T21:57:08 chembl_target-uniprot +> 2024-10-19T00:31:17 chembl_target-uniprot ### Update TTL for clinvar-dbsnp if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-dbsnp.ttl is older than output/tsv/clinvar-dbsnp.tsv ## Convert output/tsv/clinvar-dbsnp.tsv => output/ttl/clinvar-dbsnp.ttl -< 2024-10-11T21:57:08 clinvar-dbsnp +< 2024-10-19T00:31:17 clinvar-dbsnp togoid-config config/clinvar-dbsnp convert -> 2024-10-11T21:57:30 clinvar-dbsnp +> 2024-10-19T00:31:40 clinvar-dbsnp ### Update TTL for clinvar-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-hgnc.ttl is older than output/tsv/clinvar-hgnc.tsv ## Convert output/tsv/clinvar-hgnc.tsv => output/ttl/clinvar-hgnc.ttl -< 2024-10-11T21:57:30 clinvar-hgnc +< 2024-10-19T00:31:40 clinvar-hgnc togoid-config config/clinvar-hgnc convert -> 2024-10-11T21:57:51 clinvar-hgnc +> 2024-10-19T00:32:02 clinvar-hgnc ### Update TTL for clinvar-medgen if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-medgen.ttl is older than output/tsv/clinvar-medgen.tsv ## Convert output/tsv/clinvar-medgen.tsv => output/ttl/clinvar-medgen.ttl -< 2024-10-11T21:57:51 clinvar-medgen +< 2024-10-19T00:32:02 clinvar-medgen togoid-config config/clinvar-medgen convert -> 2024-10-11T21:58:20 clinvar-medgen +> 2024-10-19T00:32:33 clinvar-medgen ### Update TTL for clinvar-mondo if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-mondo.ttl is older than output/tsv/clinvar-mondo.tsv ## Convert output/tsv/clinvar-mondo.tsv => output/ttl/clinvar-mondo.ttl -< 2024-10-11T21:58:20 clinvar-mondo +< 2024-10-19T00:32:33 clinvar-mondo togoid-config config/clinvar-mondo convert -> 2024-10-11T21:58:34 clinvar-mondo +> 2024-10-19T00:32:47 clinvar-mondo ### Update TTL for clinvar-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-ncbigene.ttl is older than output/tsv/clinvar-ncbigene.tsv ## Convert output/tsv/clinvar-ncbigene.tsv => output/ttl/clinvar-ncbigene.ttl -< 2024-10-11T21:58:34 clinvar-ncbigene +< 2024-10-19T00:32:47 clinvar-ncbigene togoid-config config/clinvar-ncbigene convert -> 2024-10-11T21:58:56 clinvar-ncbigene +> 2024-10-19T00:33:10 clinvar-ncbigene ### Update TTL for clinvar-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-omim_phenotype.ttl is older than output/tsv/clinvar-omim_phenotype.tsv ## Convert output/tsv/clinvar-omim_phenotype.tsv => output/ttl/clinvar-omim_phenotype.ttl -< 2024-10-11T21:58:56 clinvar-omim_phenotype +< 2024-10-19T00:33:10 clinvar-omim_phenotype togoid-config config/clinvar-omim_phenotype convert -> 2024-10-11T21:59:07 clinvar-omim_phenotype +> 2024-10-19T00:33:23 clinvar-omim_phenotype ### Update TTL for clinvar-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-orphanet_phenotype.ttl is older than output/tsv/clinvar-orphanet_phenotype.tsv ## Convert output/tsv/clinvar-orphanet_phenotype.tsv => output/ttl/clinvar-orphanet_phenotype.ttl -< 2024-10-11T21:59:07 clinvar-orphanet_phenotype +< 2024-10-19T00:33:23 clinvar-orphanet_phenotype togoid-config config/clinvar-orphanet_phenotype convert -> 2024-10-11T21:59:21 clinvar-orphanet_phenotype +> 2024-10-19T00:33:37 clinvar-orphanet_phenotype ### Update TTL for clinvar-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/clinvar-uniprot.ttl is older than output/tsv/clinvar-uniprot.tsv ## Convert output/tsv/clinvar-uniprot.tsv => output/ttl/clinvar-uniprot.ttl -< 2024-10-11T21:59:21 clinvar-uniprot +< 2024-10-19T00:33:37 clinvar-uniprot togoid-config config/clinvar-uniprot convert -> 2024-10-11T21:59:21 clinvar-uniprot +> 2024-10-19T00:33:37 clinvar-uniprot ### Update TTL for cog-insdc if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/cog-insdc.ttl is newer than output/tsv/cog-insdc.tsv # => Preserving output/ttl/cog-insdc.ttl @@ -5547,99 +6217,99 @@ togoid-config config/clinvar-uniprot convert ### Update TTL for doid-mesh if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-mesh.ttl is older than output/tsv/doid-mesh.tsv ## Convert output/tsv/doid-mesh.tsv => output/ttl/doid-mesh.ttl -< 2024-10-11T21:59:21 doid-mesh +< 2024-10-19T00:33:37 doid-mesh togoid-config config/doid-mesh convert -> 2024-10-11T21:59:21 doid-mesh +> 2024-10-19T00:33:38 doid-mesh ### Update TTL for doid-ncit_disease if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-ncit_disease.ttl is older than output/tsv/doid-ncit_disease.tsv ## Convert output/tsv/doid-ncit_disease.tsv => output/ttl/doid-ncit_disease.ttl -< 2024-10-11T21:59:21 doid-ncit_disease +< 2024-10-19T00:33:38 doid-ncit_disease togoid-config config/doid-ncit_disease convert -> 2024-10-11T21:59:21 doid-ncit_disease +> 2024-10-19T00:33:38 doid-ncit_disease ### Update TTL for doid-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/doid-omim_phenotype.ttl is older than output/tsv/doid-omim_phenotype.tsv ## Convert output/tsv/doid-omim_phenotype.tsv => output/ttl/doid-omim_phenotype.ttl -< 2024-10-11T21:59:21 doid-omim_phenotype +< 2024-10-19T00:33:38 doid-omim_phenotype togoid-config config/doid-omim_phenotype convert -> 2024-10-11T21:59:22 doid-omim_phenotype +> 2024-10-19T00:33:38 doid-omim_phenotype ### Update TTL for ensembl_gene-affy_probeset if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-affy_probeset.ttl is older than output/tsv/ensembl_gene-affy_probeset.tsv ## Convert output/tsv/ensembl_gene-affy_probeset.tsv => output/ttl/ensembl_gene-affy_probeset.ttl -< 2024-10-11T21:59:22 ensembl_gene-affy_probeset +< 2024-10-19T00:33:38 ensembl_gene-affy_probeset togoid-config config/ensembl_gene-affy_probeset convert -> 2024-10-11T21:59:22 ensembl_gene-affy_probeset +> 2024-10-19T00:33:39 ensembl_gene-affy_probeset ### Update TTL for ensembl_gene-ensembl_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ensembl_protein.ttl is older than output/tsv/ensembl_gene-ensembl_protein.tsv ## Convert output/tsv/ensembl_gene-ensembl_protein.tsv => output/ttl/ensembl_gene-ensembl_protein.ttl -< 2024-10-11T21:59:22 ensembl_gene-ensembl_protein +< 2024-10-19T00:33:39 ensembl_gene-ensembl_protein togoid-config config/ensembl_gene-ensembl_protein convert -> 2024-10-11T22:01:28 ensembl_gene-ensembl_protein +> 2024-10-19T00:35:46 ensembl_gene-ensembl_protein ### Update TTL for ensembl_gene-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ensembl_transcript.ttl is older than output/tsv/ensembl_gene-ensembl_transcript.tsv ## Convert output/tsv/ensembl_gene-ensembl_transcript.tsv => output/ttl/ensembl_gene-ensembl_transcript.ttl -< 2024-10-11T22:01:28 ensembl_gene-ensembl_transcript +< 2024-10-19T00:35:46 ensembl_gene-ensembl_transcript togoid-config config/ensembl_gene-ensembl_transcript convert -> 2024-10-11T22:04:00 ensembl_gene-ensembl_transcript +> 2024-10-19T00:38:28 ensembl_gene-ensembl_transcript ### Update TTL for ensembl_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-hgnc.ttl is older than output/tsv/ensembl_gene-hgnc.tsv ## Convert output/tsv/ensembl_gene-hgnc.tsv => output/ttl/ensembl_gene-hgnc.ttl -< 2024-10-11T22:04:00 ensembl_gene-hgnc +< 2024-10-19T00:38:28 ensembl_gene-hgnc togoid-config config/ensembl_gene-hgnc convert -> 2024-10-11T22:04:01 ensembl_gene-hgnc +> 2024-10-19T00:38:28 ensembl_gene-hgnc ### Update TTL for ensembl_gene-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-ncbigene.ttl is older than output/tsv/ensembl_gene-ncbigene.tsv ## Convert output/tsv/ensembl_gene-ncbigene.tsv => output/ttl/ensembl_gene-ncbigene.ttl -< 2024-10-11T22:04:01 ensembl_gene-ncbigene +< 2024-10-19T00:38:28 ensembl_gene-ncbigene togoid-config config/ensembl_gene-ncbigene convert -> 2024-10-11T22:06:21 ensembl_gene-ncbigene +> 2024-10-19T00:40:44 ensembl_gene-ncbigene ### Update TTL for ensembl_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_gene-uniprot.ttl is older than output/tsv/ensembl_gene-uniprot.tsv ## Convert output/tsv/ensembl_gene-uniprot.tsv => output/ttl/ensembl_gene-uniprot.ttl -< 2024-10-11T22:06:21 ensembl_gene-uniprot +< 2024-10-19T00:40:44 ensembl_gene-uniprot togoid-config config/ensembl_gene-uniprot convert -> 2024-10-11T22:07:07 ensembl_gene-uniprot +> 2024-10-19T00:41:31 ensembl_gene-uniprot ### Update TTL for ensembl_protein-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_protein-ensembl_transcript.ttl is older than output/tsv/ensembl_protein-ensembl_transcript.tsv ## Convert output/tsv/ensembl_protein-ensembl_transcript.tsv => output/ttl/ensembl_protein-ensembl_transcript.ttl -< 2024-10-11T22:07:07 ensembl_protein-ensembl_transcript +< 2024-10-19T00:41:31 ensembl_protein-ensembl_transcript togoid-config config/ensembl_protein-ensembl_transcript convert -> 2024-10-11T22:09:09 ensembl_protein-ensembl_transcript +> 2024-10-19T00:43:43 ensembl_protein-ensembl_transcript ### Update TTL for ensembl_transcript-affy_probeset if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-affy_probeset.ttl is older than output/tsv/ensembl_transcript-affy_probeset.tsv ## Convert output/tsv/ensembl_transcript-affy_probeset.tsv => output/ttl/ensembl_transcript-affy_probeset.ttl -< 2024-10-11T22:09:09 ensembl_transcript-affy_probeset +< 2024-10-19T00:43:43 ensembl_transcript-affy_probeset togoid-config config/ensembl_transcript-affy_probeset convert -> 2024-10-11T22:09:11 ensembl_transcript-affy_probeset +> 2024-10-19T00:43:46 ensembl_transcript-affy_probeset ### Update TTL for ensembl_transcript-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-go.ttl is older than output/tsv/ensembl_transcript-go.tsv ## Convert output/tsv/ensembl_transcript-go.tsv => output/ttl/ensembl_transcript-go.ttl -< 2024-10-11T22:09:11 ensembl_transcript-go +< 2024-10-19T00:43:46 ensembl_transcript-go togoid-config config/ensembl_transcript-go convert -> 2024-10-11T22:21:07 ensembl_transcript-go +> 2024-10-19T00:56:19 ensembl_transcript-go ### Update TTL for ensembl_transcript-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-hgnc.ttl is older than output/tsv/ensembl_transcript-hgnc.tsv ## Convert output/tsv/ensembl_transcript-hgnc.tsv => output/ttl/ensembl_transcript-hgnc.ttl -< 2024-10-11T22:21:07 ensembl_transcript-hgnc +< 2024-10-19T00:56:19 ensembl_transcript-hgnc togoid-config config/ensembl_transcript-hgnc convert -> 2024-10-11T22:21:09 ensembl_transcript-hgnc +> 2024-10-19T00:56:21 ensembl_transcript-hgnc ### Update TTL for ensembl_transcript-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ensembl_transcript-refseq_rna.ttl is older than output/tsv/ensembl_transcript-refseq_rna.tsv ## Convert output/tsv/ensembl_transcript-refseq_rna.tsv => output/ttl/ensembl_transcript-refseq_rna.ttl -< 2024-10-11T22:21:09 ensembl_transcript-refseq_rna +< 2024-10-19T00:56:21 ensembl_transcript-refseq_rna togoid-config config/ensembl_transcript-refseq_rna convert -> 2024-10-11T22:29:06 ensembl_transcript-refseq_rna +> 2024-10-19T01:04:58 ensembl_transcript-refseq_rna ### Update TTL for gea-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/gea-bioproject.ttl is older than output/tsv/gea-bioproject.tsv ## Convert output/tsv/gea-bioproject.tsv => output/ttl/gea-bioproject.ttl -< 2024-10-11T22:29:06 gea-bioproject +< 2024-10-19T01:04:58 gea-bioproject togoid-config config/gea-bioproject convert -> 2024-10-11T22:29:06 gea-bioproject +> 2024-10-19T01:04:58 gea-bioproject ### Update TTL for gea-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/gea-biosample.ttl is older than output/tsv/gea-biosample.tsv ## Convert output/tsv/gea-biosample.tsv => output/ttl/gea-biosample.ttl -< 2024-10-11T22:29:06 gea-biosample +< 2024-10-19T01:04:58 gea-biosample togoid-config config/gea-biosample convert -> 2024-10-11T22:29:06 gea-biosample +> 2024-10-19T01:04:59 gea-biosample ### Update TTL for glycomotif-glytoucan if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/glycomotif-glytoucan.ttl is newer than output/tsv/glycomotif-glytoucan.tsv # => Preserving output/ttl/glycomotif-glytoucan.ttl @@ -5649,60 +6319,102 @@ togoid-config config/gea-biosample convert ### Update TTL for glytoucan-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/glytoucan-ncbigene.ttl is older than output/tsv/glytoucan-ncbigene.tsv ## Convert output/tsv/glytoucan-ncbigene.tsv => output/ttl/glytoucan-ncbigene.ttl -< 2024-10-11T22:29:06 glytoucan-ncbigene +< 2024-10-19T01:04:59 glytoucan-ncbigene togoid-config config/glytoucan-ncbigene convert -> 2024-10-11T22:29:06 glytoucan-ncbigene +> 2024-10-19T01:04:59 glytoucan-ncbigene ### Update TTL for glytoucan-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/glytoucan-uniprot.ttl is older than output/tsv/glytoucan-uniprot.tsv ## Convert output/tsv/glytoucan-uniprot.tsv => output/ttl/glytoucan-uniprot.ttl -< 2024-10-11T22:29:06 glytoucan-uniprot +< 2024-10-19T01:04:59 glytoucan-uniprot togoid-config config/glytoucan-uniprot convert -> 2024-10-11T22:29:07 glytoucan-uniprot +> 2024-10-19T01:05:00 glytoucan-uniprot ### Update TTL for hgnc-ccds if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/hgnc-ccds.ttl is newer than output/tsv/hgnc-ccds.tsv # => Preserving output/ttl/hgnc-ccds.ttl -### Update TTL for hgnc-ec if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-ec.ttl is newer than output/tsv/hgnc-ec.tsv -# => Preserving output/ttl/hgnc-ec.ttl -### Update TTL for hgnc-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-ensembl_gene.ttl is newer than output/tsv/hgnc-ensembl_gene.tsv -# => Preserving output/ttl/hgnc-ensembl_gene.ttl -### Update TTL for hgnc-hgnc_symbol if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-hgnc_symbol.ttl is newer than output/tsv/hgnc-hgnc_symbol.tsv -# => Preserving output/ttl/hgnc-hgnc_symbol.ttl -### Update TTL for hgnc-insdc if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-insdc.ttl is newer than output/tsv/hgnc-insdc.tsv -# => Preserving output/ttl/hgnc-insdc.ttl -### Update TTL for hgnc-lrg if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-lrg.ttl is newer than output/tsv/hgnc-lrg.tsv -# => Preserving output/ttl/hgnc-lrg.ttl -### Update TTL for hgnc-mgi_gene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-mgi_gene.ttl is newer than output/tsv/hgnc-mgi_gene.tsv -# => Preserving output/ttl/hgnc-mgi_gene.ttl -### Update TTL for hgnc-mirbase if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-mirbase.ttl is newer than output/tsv/hgnc-mirbase.tsv -# => Preserving output/ttl/hgnc-mirbase.ttl -### Update TTL for hgnc-ncbigene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-ncbigene.ttl is newer than output/tsv/hgnc-ncbigene.tsv -# => Preserving output/ttl/hgnc-ncbigene.ttl -### Update TTL for hgnc-omim_gene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-omim_gene.ttl is newer than output/tsv/hgnc-omim_gene.tsv -# => Preserving output/ttl/hgnc-omim_gene.ttl -### Update TTL for hgnc-pubmed if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-pubmed.ttl is newer than output/tsv/hgnc-pubmed.tsv -# => Preserving output/ttl/hgnc-pubmed.ttl -### Update TTL for hgnc-refseq_genomic if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-refseq_genomic.ttl is newer than output/tsv/hgnc-refseq_genomic.tsv -# => Preserving output/ttl/hgnc-refseq_genomic.ttl -### Update TTL for hgnc-refseq_rna if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-refseq_rna.ttl is newer than output/tsv/hgnc-refseq_rna.tsv -# => Preserving output/ttl/hgnc-refseq_rna.ttl -### Update TTL for hgnc-rgd if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-rgd.ttl is newer than output/tsv/hgnc-rgd.tsv -# => Preserving output/ttl/hgnc-rgd.ttl -### Update TTL for hgnc-uniprot if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/hgnc-uniprot.ttl is newer than output/tsv/hgnc-uniprot.tsv -# => Preserving output/ttl/hgnc-uniprot.ttl +### Update TTL for hgnc-ec if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-ec.ttl is older than output/tsv/hgnc-ec.tsv +## Convert output/tsv/hgnc-ec.tsv => output/ttl/hgnc-ec.ttl +< 2024-10-19T01:05:00 hgnc-ec +togoid-config config/hgnc-ec convert +> 2024-10-19T01:05:00 hgnc-ec +### Update TTL for hgnc-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-ensembl_gene.ttl is older than output/tsv/hgnc-ensembl_gene.tsv +## Convert output/tsv/hgnc-ensembl_gene.tsv => output/ttl/hgnc-ensembl_gene.ttl +< 2024-10-19T01:05:00 hgnc-ensembl_gene +togoid-config config/hgnc-ensembl_gene convert +> 2024-10-19T01:05:01 hgnc-ensembl_gene +### Update TTL for hgnc-hgnc_symbol if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-hgnc_symbol.ttl is older than output/tsv/hgnc-hgnc_symbol.tsv +## Convert output/tsv/hgnc-hgnc_symbol.tsv => output/ttl/hgnc-hgnc_symbol.ttl +< 2024-10-19T01:05:01 hgnc-hgnc_symbol +togoid-config config/hgnc-hgnc_symbol convert +> 2024-10-19T01:05:01 hgnc-hgnc_symbol +### Update TTL for hgnc-insdc if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-insdc.ttl is older than output/tsv/hgnc-insdc.tsv +## Convert output/tsv/hgnc-insdc.tsv => output/ttl/hgnc-insdc.ttl +< 2024-10-19T01:05:01 hgnc-insdc +togoid-config config/hgnc-insdc convert +> 2024-10-19T01:05:01 hgnc-insdc +### Update TTL for hgnc-lrg if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-lrg.ttl is older than output/tsv/hgnc-lrg.tsv +## Convert output/tsv/hgnc-lrg.tsv => output/ttl/hgnc-lrg.ttl +< 2024-10-19T01:05:01 hgnc-lrg +togoid-config config/hgnc-lrg convert +> 2024-10-19T01:05:02 hgnc-lrg +### Update TTL for hgnc-mgi_gene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-mgi_gene.ttl is older than output/tsv/hgnc-mgi_gene.tsv +## Convert output/tsv/hgnc-mgi_gene.tsv => output/ttl/hgnc-mgi_gene.ttl +< 2024-10-19T01:05:02 hgnc-mgi_gene +togoid-config config/hgnc-mgi_gene convert +> 2024-10-19T01:05:02 hgnc-mgi_gene +### Update TTL for hgnc-mirbase if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-mirbase.ttl is older than output/tsv/hgnc-mirbase.tsv +## Convert output/tsv/hgnc-mirbase.tsv => output/ttl/hgnc-mirbase.ttl +< 2024-10-19T01:05:02 hgnc-mirbase +togoid-config config/hgnc-mirbase convert +> 2024-10-19T01:05:02 hgnc-mirbase +### Update TTL for hgnc-ncbigene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-ncbigene.ttl is older than output/tsv/hgnc-ncbigene.tsv +## Convert output/tsv/hgnc-ncbigene.tsv => output/ttl/hgnc-ncbigene.ttl +< 2024-10-19T01:05:02 hgnc-ncbigene +togoid-config config/hgnc-ncbigene convert +> 2024-10-19T01:05:03 hgnc-ncbigene +### Update TTL for hgnc-omim_gene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-omim_gene.ttl is older than output/tsv/hgnc-omim_gene.tsv +## Convert output/tsv/hgnc-omim_gene.tsv => output/ttl/hgnc-omim_gene.ttl +< 2024-10-19T01:05:03 hgnc-omim_gene +togoid-config config/hgnc-omim_gene convert +> 2024-10-19T01:05:03 hgnc-omim_gene +### Update TTL for hgnc-pubmed if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-pubmed.ttl is older than output/tsv/hgnc-pubmed.tsv +## Convert output/tsv/hgnc-pubmed.tsv => output/ttl/hgnc-pubmed.ttl +< 2024-10-19T01:05:03 hgnc-pubmed +togoid-config config/hgnc-pubmed convert +> 2024-10-19T01:05:04 hgnc-pubmed +### Update TTL for hgnc-refseq_genomic if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-refseq_genomic.ttl is older than output/tsv/hgnc-refseq_genomic.tsv +## Convert output/tsv/hgnc-refseq_genomic.tsv => output/ttl/hgnc-refseq_genomic.ttl +< 2024-10-19T01:05:04 hgnc-refseq_genomic +togoid-config config/hgnc-refseq_genomic convert +> 2024-10-19T01:05:04 hgnc-refseq_genomic +### Update TTL for hgnc-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-refseq_rna.ttl is older than output/tsv/hgnc-refseq_rna.tsv +## Convert output/tsv/hgnc-refseq_rna.tsv => output/ttl/hgnc-refseq_rna.ttl +< 2024-10-19T01:05:04 hgnc-refseq_rna +togoid-config config/hgnc-refseq_rna convert +> 2024-10-19T01:05:05 hgnc-refseq_rna +### Update TTL for hgnc-rgd if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-rgd.ttl is older than output/tsv/hgnc-rgd.tsv +## Convert output/tsv/hgnc-rgd.tsv => output/ttl/hgnc-rgd.ttl +< 2024-10-19T01:05:05 hgnc-rgd +togoid-config config/hgnc-rgd convert +> 2024-10-19T01:05:05 hgnc-rgd +### Update TTL for hgnc-uniprot if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/hgnc-uniprot.ttl is older than output/tsv/hgnc-uniprot.tsv +## Convert output/tsv/hgnc-uniprot.tsv => output/ttl/hgnc-uniprot.ttl +< 2024-10-19T01:05:05 hgnc-uniprot +togoid-config config/hgnc-uniprot convert +> 2024-10-19T01:05:05 hgnc-uniprot ### Update TTL for hmdb-chebi if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/hmdb-chebi.ttl is newer than output/tsv/hmdb-chebi.tsv # => Preserving output/ttl/hmdb-chebi.ttl @@ -5721,9 +6433,9 @@ togoid-config config/glytoucan-uniprot convert ### Update TTL for hp_inheritance-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/hp_inheritance-omim_phenotype.ttl is older than output/tsv/hp_inheritance-omim_phenotype.tsv ## Convert output/tsv/hp_inheritance-omim_phenotype.tsv => output/ttl/hp_inheritance-omim_phenotype.ttl -< 2024-10-11T22:29:07 hp_inheritance-omim_phenotype +< 2024-10-19T01:05:05 hp_inheritance-omim_phenotype togoid-config config/hp_inheritance-omim_phenotype convert -> 2024-10-11T22:29:07 hp_inheritance-omim_phenotype +> 2024-10-19T01:05:06 hp_inheritance-omim_phenotype ### Update TTL for hp_phenotype-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/hp_phenotype-omim_phenotype.ttl is newer than output/tsv/hp_phenotype-omim_phenotype.tsv # => Preserving output/ttl/hp_phenotype-omim_phenotype.ttl @@ -5733,27 +6445,27 @@ togoid-config config/hp_inheritance-omim_phenotype convert ### Update TTL for insdc-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc-bioproject.ttl is older than output/tsv/insdc-bioproject.tsv ## Convert output/tsv/insdc-bioproject.tsv => output/ttl/insdc-bioproject.ttl -< 2024-10-11T22:29:07 insdc-bioproject +< 2024-10-19T01:05:06 insdc-bioproject togoid-config config/insdc-bioproject convert -> 2024-10-11T22:38:24 insdc-bioproject +> 2024-10-19T01:14:41 insdc-bioproject ### Update TTL for insdc-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc-biosample.ttl is older than output/tsv/insdc-biosample.tsv ## Convert output/tsv/insdc-biosample.tsv => output/ttl/insdc-biosample.ttl -< 2024-10-11T22:38:24 insdc-biosample +< 2024-10-19T01:14:41 insdc-biosample togoid-config config/insdc-biosample convert -> 2024-10-11T23:19:00 insdc-biosample +> 2024-10-19T01:52:50 insdc-biosample ### Update TTL for insdc_master-bioproject if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc_master-bioproject.ttl is older than output/tsv/insdc_master-bioproject.tsv ## Convert output/tsv/insdc_master-bioproject.tsv => output/ttl/insdc_master-bioproject.ttl -< 2024-10-11T23:19:00 insdc_master-bioproject +< 2024-10-19T01:52:50 insdc_master-bioproject togoid-config config/insdc_master-bioproject convert -> 2024-10-11T23:19:12 insdc_master-bioproject +> 2024-10-19T01:53:03 insdc_master-bioproject ### Update TTL for insdc_master-biosample if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/insdc_master-biosample.ttl is older than output/tsv/insdc_master-biosample.tsv ## Convert output/tsv/insdc_master-biosample.tsv => output/ttl/insdc_master-biosample.ttl -< 2024-10-11T23:19:12 insdc_master-biosample +< 2024-10-19T01:53:03 insdc_master-biosample togoid-config config/insdc_master-biosample convert -> 2024-10-11T23:19:25 insdc_master-biosample +> 2024-10-19T01:53:15 insdc_master-biosample ### Update TTL for interpro-go if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/interpro-go.ttl is newer than output/tsv/interpro-go.tsv # => Preserving output/ttl/interpro-go.ttl @@ -5778,15 +6490,24 @@ togoid-config config/insdc_master-biosample convert ### Update TTL for interpro-uniprot if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/interpro-uniprot.ttl is newer than output/tsv/interpro-uniprot.tsv # => Preserving output/ttl/interpro-uniprot.ttl -### Update TTL for jga_study-jga_dataset if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/jga_study-jga_dataset.ttl is newer than output/tsv/jga_study-jga_dataset.tsv -# => Preserving output/ttl/jga_study-jga_dataset.ttl -### Update TTL for jga_study-nbdc_human_db if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/jga_study-nbdc_human_db.ttl is newer than output/tsv/jga_study-nbdc_human_db.tsv -# => Preserving output/ttl/jga_study-nbdc_human_db.ttl -### Update TTL for jga_study-pubmed if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/jga_study-pubmed.ttl is newer than output/tsv/jga_study-pubmed.tsv -# => Preserving output/ttl/jga_study-pubmed.ttl +### Update TTL for jga_study-jga_dataset if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/jga_study-jga_dataset.ttl is older than output/tsv/jga_study-jga_dataset.tsv +## Convert output/tsv/jga_study-jga_dataset.tsv => output/ttl/jga_study-jga_dataset.ttl +< 2024-10-19T01:53:15 jga_study-jga_dataset +togoid-config config/jga_study-jga_dataset convert +> 2024-10-19T01:53:16 jga_study-jga_dataset +### Update TTL for jga_study-nbdc_human_db if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/jga_study-nbdc_human_db.ttl is older than output/tsv/jga_study-nbdc_human_db.tsv +## Convert output/tsv/jga_study-nbdc_human_db.tsv => output/ttl/jga_study-nbdc_human_db.ttl +< 2024-10-19T01:53:16 jga_study-nbdc_human_db +togoid-config config/jga_study-nbdc_human_db convert +> 2024-10-19T01:53:16 jga_study-nbdc_human_db +### Update TTL for jga_study-pubmed if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/jga_study-pubmed.ttl is older than output/tsv/jga_study-pubmed.tsv +## Convert output/tsv/jga_study-pubmed.tsv => output/ttl/jga_study-pubmed.ttl +< 2024-10-19T01:53:16 jga_study-pubmed +togoid-config config/jga_study-pubmed convert +> 2024-10-19T01:53:16 jga_study-pubmed ### Update TTL for lipidmaps-chebi if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/lipidmaps-chebi.ttl is newer than output/tsv/lipidmaps-chebi.tsv # => Preserving output/ttl/lipidmaps-chebi.ttl @@ -5796,78 +6517,102 @@ togoid-config config/insdc_master-biosample convert ### Update TTL for lipidmaps-swisslipids if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/lipidmaps-swisslipids.ttl is newer than output/tsv/lipidmaps-swisslipids.tsv # => Preserving output/ttl/lipidmaps-swisslipids.ttl -### Update TTL for mbgd_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/mbgd_gene-uniprot.ttl is newer than output/tsv/mbgd_gene-uniprot.tsv -# => Preserving output/ttl/mbgd_gene-uniprot.ttl -### Update TTL for mbgd_organism-taxonomy if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/mbgd_organism-taxonomy.ttl is newer than output/tsv/mbgd_organism-taxonomy.tsv -# => Preserving output/ttl/mbgd_organism-taxonomy.ttl -### Update TTL for medgen-hp_phenotype if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/medgen-hp_phenotype.ttl is newer than output/tsv/medgen-hp_phenotype.tsv -# => Preserving output/ttl/medgen-hp_phenotype.ttl -### Update TTL for medgen-mesh if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/medgen-mesh.ttl is newer than output/tsv/medgen-mesh.tsv -# => Preserving output/ttl/medgen-mesh.ttl -### Update TTL for medgen-mondo if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/medgen-mondo.ttl is newer than output/tsv/medgen-mondo.tsv -# => Preserving output/ttl/medgen-mondo.ttl -### Update TTL for medgen-ncbigene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/medgen-ncbigene.ttl is newer than output/tsv/medgen-ncbigene.tsv -# => Preserving output/ttl/medgen-ncbigene.ttl -### Update TTL for medgen-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/medgen-omim_phenotype.ttl is newer than output/tsv/medgen-omim_phenotype.tsv -# => Preserving output/ttl/medgen-omim_phenotype.ttl -### Update TTL for medgen-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/medgen-orphanet_phenotype.ttl is newer than output/tsv/medgen-orphanet_phenotype.tsv -# => Preserving output/ttl/medgen-orphanet_phenotype.ttl +### Update TTL for mbgd_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/mbgd_gene-uniprot.ttl is older than output/tsv/mbgd_gene-uniprot.tsv +## Convert output/tsv/mbgd_gene-uniprot.tsv => output/ttl/mbgd_gene-uniprot.ttl +< 2024-10-19T01:53:16 mbgd_gene-uniprot +togoid-config config/mbgd_gene-uniprot convert +> 2024-10-19T02:48:52 mbgd_gene-uniprot +### Update TTL for mbgd_organism-taxonomy if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/mbgd_organism-taxonomy.ttl is older than output/tsv/mbgd_organism-taxonomy.tsv +## Convert output/tsv/mbgd_organism-taxonomy.tsv => output/ttl/mbgd_organism-taxonomy.ttl +< 2024-10-19T02:48:52 mbgd_organism-taxonomy +togoid-config config/mbgd_organism-taxonomy convert +> 2024-10-19T02:48:53 mbgd_organism-taxonomy +### Update TTL for medgen-hp_phenotype if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/medgen-hp_phenotype.ttl is older than output/tsv/medgen-hp_phenotype.tsv +## Convert output/tsv/medgen-hp_phenotype.tsv => output/ttl/medgen-hp_phenotype.ttl +< 2024-10-19T02:48:53 medgen-hp_phenotype +togoid-config config/medgen-hp_phenotype convert +> 2024-10-19T02:48:53 medgen-hp_phenotype +### Update TTL for medgen-mesh if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/medgen-mesh.ttl is older than output/tsv/medgen-mesh.tsv +## Convert output/tsv/medgen-mesh.tsv => output/ttl/medgen-mesh.ttl +< 2024-10-19T02:48:53 medgen-mesh +togoid-config config/medgen-mesh convert +> 2024-10-19T02:48:53 medgen-mesh +### Update TTL for medgen-mondo if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/medgen-mondo.ttl is older than output/tsv/medgen-mondo.tsv +## Convert output/tsv/medgen-mondo.tsv => output/ttl/medgen-mondo.ttl +< 2024-10-19T02:48:53 medgen-mondo +togoid-config config/medgen-mondo convert +> 2024-10-19T02:48:53 medgen-mondo +### Update TTL for medgen-ncbigene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/medgen-ncbigene.ttl is older than output/tsv/medgen-ncbigene.tsv +## Convert output/tsv/medgen-ncbigene.tsv => output/ttl/medgen-ncbigene.ttl +< 2024-10-19T02:48:53 medgen-ncbigene +togoid-config config/medgen-ncbigene convert +> 2024-10-19T02:48:54 medgen-ncbigene +### Update TTL for medgen-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/medgen-omim_phenotype.ttl is older than output/tsv/medgen-omim_phenotype.tsv +## Convert output/tsv/medgen-omim_phenotype.tsv => output/ttl/medgen-omim_phenotype.ttl +< 2024-10-19T02:48:54 medgen-omim_phenotype +togoid-config config/medgen-omim_phenotype convert +> 2024-10-19T02:48:54 medgen-omim_phenotype +### Update TTL for medgen-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/medgen-orphanet_phenotype.ttl is older than output/tsv/medgen-orphanet_phenotype.tsv +## Convert output/tsv/medgen-orphanet_phenotype.tsv => output/ttl/medgen-orphanet_phenotype.ttl +< 2024-10-19T02:48:54 medgen-orphanet_phenotype +togoid-config config/medgen-orphanet_phenotype convert +> 2024-10-19T02:48:54 medgen-orphanet_phenotype ### Update TTL for mgi_gene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-ensembl_gene.ttl is older than output/tsv/mgi_gene-ensembl_gene.tsv ## Convert output/tsv/mgi_gene-ensembl_gene.tsv => output/ttl/mgi_gene-ensembl_gene.ttl -< 2024-10-11T23:19:25 mgi_gene-ensembl_gene +< 2024-10-19T02:48:54 mgi_gene-ensembl_gene togoid-config config/mgi_gene-ensembl_gene convert -> 2024-10-11T23:19:26 mgi_gene-ensembl_gene +> 2024-10-19T02:48:55 mgi_gene-ensembl_gene ### Update TTL for mgi_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-hgnc.ttl is older than output/tsv/mgi_gene-hgnc.tsv ## Convert output/tsv/mgi_gene-hgnc.tsv => output/ttl/mgi_gene-hgnc.ttl -< 2024-10-11T23:19:26 mgi_gene-hgnc +< 2024-10-19T02:48:55 mgi_gene-hgnc togoid-config config/mgi_gene-hgnc convert -> 2024-10-11T23:19:26 mgi_gene-hgnc +> 2024-10-19T02:48:55 mgi_gene-hgnc ### Update TTL for mgi_gene-mgi_allele if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-mgi_allele.ttl is older than output/tsv/mgi_gene-mgi_allele.tsv ## Convert output/tsv/mgi_gene-mgi_allele.tsv => output/ttl/mgi_gene-mgi_allele.ttl -< 2024-10-11T23:19:26 mgi_gene-mgi_allele +< 2024-10-19T02:48:55 mgi_gene-mgi_allele togoid-config config/mgi_gene-mgi_allele convert -> 2024-10-11T23:19:27 mgi_gene-mgi_allele +> 2024-10-19T02:48:56 mgi_gene-mgi_allele ### Update TTL for mgi_gene-ncbigene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-ncbigene.ttl is older than output/tsv/mgi_gene-ncbigene.tsv ## Convert output/tsv/mgi_gene-ncbigene.tsv => output/ttl/mgi_gene-ncbigene.ttl -< 2024-10-11T23:19:27 mgi_gene-ncbigene +< 2024-10-19T02:48:56 mgi_gene-ncbigene togoid-config config/mgi_gene-ncbigene convert -> 2024-10-11T23:19:28 mgi_gene-ncbigene +> 2024-10-19T02:48:57 mgi_gene-ncbigene ### Update TTL for mgi_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_gene-uniprot.ttl is older than output/tsv/mgi_gene-uniprot.tsv ## Convert output/tsv/mgi_gene-uniprot.tsv => output/ttl/mgi_gene-uniprot.ttl -< 2024-10-11T23:19:28 mgi_gene-uniprot +< 2024-10-19T02:48:57 mgi_gene-uniprot togoid-config config/mgi_gene-uniprot convert -> 2024-10-11T23:19:29 mgi_gene-uniprot +> 2024-10-19T02:48:58 mgi_gene-uniprot ### Update TTL for mgi_genotype-doid if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-doid.ttl is older than output/tsv/mgi_genotype-doid.tsv ## Convert output/tsv/mgi_genotype-doid.tsv => output/ttl/mgi_genotype-doid.ttl -< 2024-10-11T23:19:29 mgi_genotype-doid +< 2024-10-19T02:48:58 mgi_genotype-doid togoid-config config/mgi_genotype-doid convert -> 2024-10-11T23:19:29 mgi_genotype-doid +> 2024-10-19T02:48:58 mgi_genotype-doid ### Update TTL for mgi_genotype-mgi_allele if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-mgi_allele.ttl is older than output/tsv/mgi_genotype-mgi_allele.tsv ## Convert output/tsv/mgi_genotype-mgi_allele.tsv => output/ttl/mgi_genotype-mgi_allele.ttl -< 2024-10-11T23:19:29 mgi_genotype-mgi_allele +< 2024-10-19T02:48:58 mgi_genotype-mgi_allele togoid-config config/mgi_genotype-mgi_allele convert -> 2024-10-11T23:19:30 mgi_genotype-mgi_allele +> 2024-10-19T02:48:59 mgi_genotype-mgi_allele ### Update TTL for mgi_genotype-mp if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/mgi_genotype-mp.ttl is older than output/tsv/mgi_genotype-mp.tsv ## Convert output/tsv/mgi_genotype-mp.tsv => output/ttl/mgi_genotype-mp.ttl -< 2024-10-11T23:19:31 mgi_genotype-mp +< 2024-10-19T02:48:59 mgi_genotype-mp togoid-config config/mgi_genotype-mp convert -> 2024-10-11T23:19:34 mgi_genotype-mp +> 2024-10-19T02:49:02 mgi_genotype-mp ### Update TTL for mondo-doid if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/mondo-doid.ttl is newer than output/tsv/mondo-doid.tsv # => Preserving output/ttl/mondo-doid.ttl @@ -5886,132 +6631,138 @@ togoid-config config/mgi_genotype-mp convert ### Update TTL for mondo-orphanet_phenotype if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/mondo-orphanet_phenotype.ttl is newer than output/tsv/mondo-orphanet_phenotype.tsv # => Preserving output/ttl/mondo-orphanet_phenotype.ttl -### Update TTL for nando-mondo if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/nando-mondo.ttl is newer than output/tsv/nando-mondo.tsv -# => Preserving output/ttl/nando-mondo.ttl +### Update TTL for nando-mondo if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/nando-mondo.ttl is older than output/tsv/nando-mondo.tsv +## Convert output/tsv/nando-mondo.tsv => output/ttl/nando-mondo.ttl +< 2024-10-19T02:49:02 nando-mondo +togoid-config config/nando-mondo convert +> 2024-10-19T02:49:02 nando-mondo ### Update TTL for ncbigene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_gene.ttl is older than output/tsv/ncbigene-ensembl_gene.tsv ## Convert output/tsv/ncbigene-ensembl_gene.tsv => output/ttl/ncbigene-ensembl_gene.ttl -< 2024-10-11T23:19:34 ncbigene-ensembl_gene +< 2024-10-19T02:49:02 ncbigene-ensembl_gene togoid-config config/ncbigene-ensembl_gene convert -> 2024-10-11T23:21:12 ncbigene-ensembl_gene +> 2024-10-19T02:50:44 ncbigene-ensembl_gene ### Update TTL for ncbigene-ensembl_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_protein.ttl is older than output/tsv/ncbigene-ensembl_protein.tsv ## Convert output/tsv/ncbigene-ensembl_protein.tsv => output/ttl/ncbigene-ensembl_protein.ttl -< 2024-10-11T23:21:12 ncbigene-ensembl_protein +< 2024-10-19T02:50:44 ncbigene-ensembl_protein togoid-config config/ncbigene-ensembl_protein convert -> 2024-10-11T23:23:07 ncbigene-ensembl_protein +> 2024-10-19T02:52:41 ncbigene-ensembl_protein ### Update TTL for ncbigene-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-ensembl_transcript.ttl is older than output/tsv/ncbigene-ensembl_transcript.tsv ## Convert output/tsv/ncbigene-ensembl_transcript.tsv => output/ttl/ncbigene-ensembl_transcript.ttl -< 2024-10-11T23:23:07 ncbigene-ensembl_transcript +< 2024-10-19T02:52:41 ncbigene-ensembl_transcript togoid-config config/ncbigene-ensembl_transcript convert -> 2024-10-11T23:25:07 ncbigene-ensembl_transcript +> 2024-10-19T02:54:44 ncbigene-ensembl_transcript ### Update TTL for ncbigene-flybase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-flybase_gene.ttl is older than output/tsv/ncbigene-flybase_gene.tsv ## Convert output/tsv/ncbigene-flybase_gene.tsv => output/ttl/ncbigene-flybase_gene.ttl -< 2024-10-11T23:25:07 ncbigene-flybase_gene +< 2024-10-19T02:54:44 ncbigene-flybase_gene togoid-config config/ncbigene-flybase_gene convert -> 2024-10-11T23:25:08 ncbigene-flybase_gene +> 2024-10-19T02:54:45 ncbigene-flybase_gene ### Update TTL for ncbigene-go if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-go.ttl is older than output/tsv/ncbigene-go.tsv ## Convert output/tsv/ncbigene-go.tsv => output/ttl/ncbigene-go.ttl -< 2024-10-11T23:25:08 ncbigene-go +< 2024-10-19T02:54:45 ncbigene-go togoid-config config/ncbigene-go convert -> 2024-10-11T23:42:56 ncbigene-go +> 2024-10-19T03:12:17 ncbigene-go ### Update TTL for ncbigene-hgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-hgnc.ttl is older than output/tsv/ncbigene-hgnc.tsv ## Convert output/tsv/ncbigene-hgnc.tsv => output/ttl/ncbigene-hgnc.ttl -< 2024-10-11T23:42:56 ncbigene-hgnc +< 2024-10-19T03:12:17 ncbigene-hgnc togoid-config config/ncbigene-hgnc convert -> 2024-10-11T23:42:57 ncbigene-hgnc +> 2024-10-19T03:12:18 ncbigene-hgnc ### Update TTL for ncbigene-mgi_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-mgi_gene.ttl is older than output/tsv/ncbigene-mgi_gene.tsv ## Convert output/tsv/ncbigene-mgi_gene.tsv => output/ttl/ncbigene-mgi_gene.ttl -< 2024-10-11T23:42:57 ncbigene-mgi_gene +< 2024-10-19T03:12:18 ncbigene-mgi_gene togoid-config config/ncbigene-mgi_gene convert -> 2024-10-11T23:42:57 ncbigene-mgi_gene +> 2024-10-19T03:12:19 ncbigene-mgi_gene ### Update TTL for ncbigene-mirbase if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-mirbase.ttl is older than output/tsv/ncbigene-mirbase.tsv ## Convert output/tsv/ncbigene-mirbase.tsv => output/ttl/ncbigene-mirbase.ttl -< 2024-10-11T23:42:57 ncbigene-mirbase +< 2024-10-19T03:12:19 ncbigene-mirbase togoid-config config/ncbigene-mirbase convert -> 2024-10-11T23:42:58 ncbigene-mirbase +> 2024-10-19T03:12:19 ncbigene-mirbase ### Update TTL for ncbigene-omim_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-omim_gene.ttl is older than output/tsv/ncbigene-omim_gene.tsv ## Convert output/tsv/ncbigene-omim_gene.tsv => output/ttl/ncbigene-omim_gene.ttl -< 2024-10-11T23:42:58 ncbigene-omim_gene +< 2024-10-19T03:12:19 ncbigene-omim_gene togoid-config config/ncbigene-omim_gene convert -> 2024-10-11T23:42:58 ncbigene-omim_gene +> 2024-10-19T03:12:19 ncbigene-omim_gene ### Update TTL for ncbigene-refseq_genomic if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_genomic.ttl is older than output/tsv/ncbigene-refseq_genomic.tsv ## Convert output/tsv/ncbigene-refseq_genomic.tsv => output/ttl/ncbigene-refseq_genomic.ttl -< 2024-10-11T23:42:58 ncbigene-refseq_genomic +< 2024-10-19T03:12:19 ncbigene-refseq_genomic togoid-config config/ncbigene-refseq_genomic convert -> 2024-10-11T23:43:00 ncbigene-refseq_genomic +> 2024-10-19T03:12:21 ncbigene-refseq_genomic ### Update TTL for ncbigene-refseq_protein if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_protein.ttl is older than output/tsv/ncbigene-refseq_protein.tsv ## Convert output/tsv/ncbigene-refseq_protein.tsv => output/ttl/ncbigene-refseq_protein.ttl -< 2024-10-11T23:43:00 ncbigene-refseq_protein +< 2024-10-19T03:12:21 ncbigene-refseq_protein togoid-config config/ncbigene-refseq_protein convert -> 2024-10-11T23:56:29 ncbigene-refseq_protein +> 2024-10-19T03:25:53 ncbigene-refseq_protein ### Update TTL for ncbigene-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-refseq_rna.ttl is older than output/tsv/ncbigene-refseq_rna.tsv ## Convert output/tsv/ncbigene-refseq_rna.tsv => output/ttl/ncbigene-refseq_rna.ttl -< 2024-10-11T23:56:29 ncbigene-refseq_rna +< 2024-10-19T03:25:53 ncbigene-refseq_rna togoid-config config/ncbigene-refseq_rna convert -> 2024-10-12T00:07:31 ncbigene-refseq_rna +> 2024-10-19T03:38:01 ncbigene-refseq_rna ### Update TTL for ncbigene-rgd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-rgd.ttl is older than output/tsv/ncbigene-rgd.tsv ## Convert output/tsv/ncbigene-rgd.tsv => output/ttl/ncbigene-rgd.ttl -< 2024-10-12T00:07:31 ncbigene-rgd +< 2024-10-19T03:38:01 ncbigene-rgd togoid-config config/ncbigene-rgd convert -> 2024-10-12T00:07:32 ncbigene-rgd +> 2024-10-19T03:38:02 ncbigene-rgd ### Update TTL for ncbigene-sgd if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-sgd.ttl is older than output/tsv/ncbigene-sgd.tsv ## Convert output/tsv/ncbigene-sgd.tsv => output/ttl/ncbigene-sgd.ttl -< 2024-10-12T00:07:32 ncbigene-sgd +< 2024-10-19T03:38:02 ncbigene-sgd togoid-config config/ncbigene-sgd convert -> 2024-10-12T00:07:32 ncbigene-sgd +> 2024-10-19T03:38:02 ncbigene-sgd ### Update TTL for ncbigene-tair if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-tair.ttl is older than output/tsv/ncbigene-tair.tsv ## Convert output/tsv/ncbigene-tair.tsv => output/ttl/ncbigene-tair.ttl -< 2024-10-12T00:07:32 ncbigene-tair +< 2024-10-19T03:38:02 ncbigene-tair togoid-config config/ncbigene-tair convert -> 2024-10-12T00:07:33 ncbigene-tair +> 2024-10-19T03:38:03 ncbigene-tair ### Update TTL for ncbigene-taxonomy if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-taxonomy.ttl is older than output/tsv/ncbigene-taxonomy.tsv ## Convert output/tsv/ncbigene-taxonomy.tsv => output/ttl/ncbigene-taxonomy.ttl -< 2024-10-12T00:07:33 ncbigene-taxonomy +< 2024-10-19T03:38:03 ncbigene-taxonomy togoid-config config/ncbigene-taxonomy convert -> 2024-10-12T00:16:06 ncbigene-taxonomy +> 2024-10-19T03:46:39 ncbigene-taxonomy ### Update TTL for ncbigene-vgnc if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-vgnc.ttl is older than output/tsv/ncbigene-vgnc.tsv ## Convert output/tsv/ncbigene-vgnc.tsv => output/ttl/ncbigene-vgnc.ttl -< 2024-10-12T00:16:06 ncbigene-vgnc +< 2024-10-19T03:46:39 ncbigene-vgnc togoid-config config/ncbigene-vgnc convert -> 2024-10-12T00:16:07 ncbigene-vgnc +> 2024-10-19T03:46:40 ncbigene-vgnc ### Update TTL for ncbigene-wormbase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-wormbase_gene.ttl is older than output/tsv/ncbigene-wormbase_gene.tsv ## Convert output/tsv/ncbigene-wormbase_gene.tsv => output/ttl/ncbigene-wormbase_gene.ttl -< 2024-10-12T00:16:07 ncbigene-wormbase_gene +< 2024-10-19T03:46:40 ncbigene-wormbase_gene togoid-config config/ncbigene-wormbase_gene convert -> 2024-10-12T00:16:08 ncbigene-wormbase_gene +> 2024-10-19T03:46:41 ncbigene-wormbase_gene ### Update TTL for ncbigene-xenbase_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-xenbase_gene.ttl is older than output/tsv/ncbigene-xenbase_gene.tsv ## Convert output/tsv/ncbigene-xenbase_gene.tsv => output/ttl/ncbigene-xenbase_gene.ttl -< 2024-10-12T00:16:08 ncbigene-xenbase_gene +< 2024-10-19T03:46:41 ncbigene-xenbase_gene togoid-config config/ncbigene-xenbase_gene convert -> 2024-10-12T00:16:08 ncbigene-xenbase_gene +> 2024-10-19T03:46:42 ncbigene-xenbase_gene ### Update TTL for ncbigene-zfin_gene if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/ncbigene-zfin_gene.ttl is older than output/tsv/ncbigene-zfin_gene.tsv ## Convert output/tsv/ncbigene-zfin_gene.tsv => output/ttl/ncbigene-zfin_gene.ttl -< 2024-10-12T00:16:08 ncbigene-zfin_gene +< 2024-10-19T03:46:42 ncbigene-zfin_gene togoid-config config/ncbigene-zfin_gene convert -> 2024-10-12T00:16:09 ncbigene-zfin_gene -### Update TTL for ncit_disease-ncit_tissue if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/ncit_disease-ncit_tissue.ttl is newer than output/tsv/ncit_disease-ncit_tissue.tsv -# => Preserving output/ttl/ncit_disease-ncit_tissue.ttl +> 2024-10-19T03:46:42 ncbigene-zfin_gene +### Update TTL for ncit_disease-ncit_tissue if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/ncit_disease-ncit_tissue.ttl is older than output/tsv/ncit_disease-ncit_tissue.tsv +## Convert output/tsv/ncit_disease-ncit_tissue.tsv => output/ttl/ncit_disease-ncit_tissue.ttl +< 2024-10-19T03:46:42 ncit_disease-ncit_tissue +togoid-config config/ncit_disease-ncit_tissue convert +> 2024-10-19T03:46:42 ncit_disease-ncit_tissue ### Update TTL for oma_protein-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/oma_protein-ensembl_gene.ttl is newer than output/tsv/oma_protein-ensembl_gene.tsv # => Preserving output/ttl/oma_protein-ensembl_gene.ttl @@ -6024,129 +6775,237 @@ togoid-config config/ncbigene-zfin_gene convert ### Update TTL for oma_protein-uniprot if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/oma_protein-uniprot.ttl is newer than output/tsv/oma_protein-uniprot.tsv # => Preserving output/ttl/oma_protein-uniprot.ttl -### Update TTL for orphanet_gene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/orphanet_gene-ensembl_gene.ttl is newer than output/tsv/orphanet_gene-ensembl_gene.tsv -# => Preserving output/ttl/orphanet_gene-ensembl_gene.ttl -### Update TTL for orphanet_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/orphanet_gene-hgnc.ttl is newer than output/tsv/orphanet_gene-hgnc.tsv -# => Preserving output/ttl/orphanet_gene-hgnc.ttl -### Update TTL for orphanet_gene-omim_gene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/orphanet_gene-omim_gene.ttl is newer than output/tsv/orphanet_gene-omim_gene.tsv -# => Preserving output/ttl/orphanet_gene-omim_gene.ttl -### Update TTL for orphanet_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/orphanet_gene-uniprot.ttl is newer than output/tsv/orphanet_gene-uniprot.tsv -# => Preserving output/ttl/orphanet_gene-uniprot.ttl -### Update TTL for orphanet_phenotype-meddra if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/orphanet_phenotype-meddra.ttl is newer than output/tsv/orphanet_phenotype-meddra.tsv -# => Preserving output/ttl/orphanet_phenotype-meddra.ttl -### Update TTL for orphanet_phenotype-mesh if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/orphanet_phenotype-mesh.ttl is newer than output/tsv/orphanet_phenotype-mesh.tsv -# => Preserving output/ttl/orphanet_phenotype-mesh.ttl -### Update TTL for orphanet_phenotype-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/orphanet_phenotype-omim_phenotype.ttl is newer than output/tsv/orphanet_phenotype-omim_phenotype.tsv -# => Preserving output/ttl/orphanet_phenotype-omim_phenotype.ttl -### Update TTL for orphanet_phenotype-orphanet_gene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/orphanet_phenotype-orphanet_gene.ttl is newer than output/tsv/orphanet_phenotype-orphanet_gene.tsv -# => Preserving output/ttl/orphanet_phenotype-orphanet_gene.ttl -### Update TTL for pdb-go if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pdb-go.ttl is newer than output/tsv/pdb-go.tsv -# => Preserving output/ttl/pdb-go.ttl -### Update TTL for pdb-interpro if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pdb-interpro.ttl is newer than output/tsv/pdb-interpro.tsv -# => Preserving output/ttl/pdb-interpro.ttl -### Update TTL for pdb-pdb_ccd if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pdb-pdb_ccd.ttl is newer than output/tsv/pdb-pdb_ccd.tsv -# => Preserving output/ttl/pdb-pdb_ccd.ttl -### Update TTL for pdb-pfam if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pdb-pfam.ttl is newer than output/tsv/pdb-pfam.tsv -# => Preserving output/ttl/pdb-pfam.ttl -### Update TTL for pdb-uniprot if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pdb-uniprot.ttl is newer than output/tsv/pdb-uniprot.tsv -# => Preserving output/ttl/pdb-uniprot.ttl +### Update TTL for orphanet_gene-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/orphanet_gene-ensembl_gene.ttl is older than output/tsv/orphanet_gene-ensembl_gene.tsv +## Convert output/tsv/orphanet_gene-ensembl_gene.tsv => output/ttl/orphanet_gene-ensembl_gene.ttl +< 2024-10-19T03:46:42 orphanet_gene-ensembl_gene +togoid-config config/orphanet_gene-ensembl_gene convert +> 2024-10-19T03:46:43 orphanet_gene-ensembl_gene +### Update TTL for orphanet_gene-hgnc if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/orphanet_gene-hgnc.ttl is older than output/tsv/orphanet_gene-hgnc.tsv +## Convert output/tsv/orphanet_gene-hgnc.tsv => output/ttl/orphanet_gene-hgnc.ttl +< 2024-10-19T03:46:43 orphanet_gene-hgnc +togoid-config config/orphanet_gene-hgnc convert +> 2024-10-19T03:46:43 orphanet_gene-hgnc +### Update TTL for orphanet_gene-omim_gene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/orphanet_gene-omim_gene.ttl is older than output/tsv/orphanet_gene-omim_gene.tsv +## Convert output/tsv/orphanet_gene-omim_gene.tsv => output/ttl/orphanet_gene-omim_gene.ttl +< 2024-10-19T03:46:43 orphanet_gene-omim_gene +togoid-config config/orphanet_gene-omim_gene convert +> 2024-10-19T03:46:43 orphanet_gene-omim_gene +### Update TTL for orphanet_gene-uniprot if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/orphanet_gene-uniprot.ttl is older than output/tsv/orphanet_gene-uniprot.tsv +## Convert output/tsv/orphanet_gene-uniprot.tsv => output/ttl/orphanet_gene-uniprot.ttl +< 2024-10-19T03:46:43 orphanet_gene-uniprot +togoid-config config/orphanet_gene-uniprot convert +> 2024-10-19T03:46:43 orphanet_gene-uniprot +### Update TTL for orphanet_phenotype-meddra if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/orphanet_phenotype-meddra.ttl is older than output/tsv/orphanet_phenotype-meddra.tsv +## Convert output/tsv/orphanet_phenotype-meddra.tsv => output/ttl/orphanet_phenotype-meddra.ttl +< 2024-10-19T03:46:43 orphanet_phenotype-meddra +togoid-config config/orphanet_phenotype-meddra convert +> 2024-10-19T03:46:43 orphanet_phenotype-meddra +### Update TTL for orphanet_phenotype-mesh if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/orphanet_phenotype-mesh.ttl is older than output/tsv/orphanet_phenotype-mesh.tsv +## Convert output/tsv/orphanet_phenotype-mesh.tsv => output/ttl/orphanet_phenotype-mesh.ttl +< 2024-10-19T03:46:43 orphanet_phenotype-mesh +togoid-config config/orphanet_phenotype-mesh convert +> 2024-10-19T03:46:44 orphanet_phenotype-mesh +### Update TTL for orphanet_phenotype-omim_phenotype if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/orphanet_phenotype-omim_phenotype.ttl is older than output/tsv/orphanet_phenotype-omim_phenotype.tsv +## Convert output/tsv/orphanet_phenotype-omim_phenotype.tsv => output/ttl/orphanet_phenotype-omim_phenotype.ttl +< 2024-10-19T03:46:44 orphanet_phenotype-omim_phenotype +togoid-config config/orphanet_phenotype-omim_phenotype convert +> 2024-10-19T03:46:44 orphanet_phenotype-omim_phenotype +### Update TTL for orphanet_phenotype-orphanet_gene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/orphanet_phenotype-orphanet_gene.ttl is older than output/tsv/orphanet_phenotype-orphanet_gene.tsv +## Convert output/tsv/orphanet_phenotype-orphanet_gene.tsv => output/ttl/orphanet_phenotype-orphanet_gene.ttl +< 2024-10-19T03:46:44 orphanet_phenotype-orphanet_gene +togoid-config config/orphanet_phenotype-orphanet_gene convert +> 2024-10-19T03:46:44 orphanet_phenotype-orphanet_gene +### Update TTL for pdb-go if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pdb-go.ttl is older than output/tsv/pdb-go.tsv +## Convert output/tsv/pdb-go.tsv => output/ttl/pdb-go.ttl +< 2024-10-19T03:46:44 pdb-go +togoid-config config/pdb-go convert +> 2024-10-19T03:46:56 pdb-go +### Update TTL for pdb-interpro if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pdb-interpro.ttl is older than output/tsv/pdb-interpro.tsv +## Convert output/tsv/pdb-interpro.tsv => output/ttl/pdb-interpro.ttl +< 2024-10-19T03:46:56 pdb-interpro +togoid-config config/pdb-interpro convert +> 2024-10-19T03:47:02 pdb-interpro +### Update TTL for pdb-pdb_ccd if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pdb-pdb_ccd.ttl is older than output/tsv/pdb-pdb_ccd.tsv +## Convert output/tsv/pdb-pdb_ccd.tsv => output/ttl/pdb-pdb_ccd.ttl +< 2024-10-19T03:47:02 pdb-pdb_ccd +togoid-config config/pdb-pdb_ccd convert +> 2024-10-19T03:47:06 pdb-pdb_ccd +### Update TTL for pdb-pfam if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pdb-pfam.ttl is older than output/tsv/pdb-pfam.tsv +## Convert output/tsv/pdb-pfam.tsv => output/ttl/pdb-pfam.ttl +< 2024-10-19T03:47:06 pdb-pfam +togoid-config config/pdb-pfam convert +> 2024-10-19T03:47:09 pdb-pfam +### Update TTL for pdb-uniprot if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pdb-uniprot.ttl is older than output/tsv/pdb-uniprot.tsv +## Convert output/tsv/pdb-uniprot.tsv => output/ttl/pdb-uniprot.ttl +< 2024-10-19T03:47:09 pdb-uniprot +togoid-config config/pdb-uniprot convert +> 2024-10-19T03:47:12 pdb-uniprot ### Update TTL for pmc-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/pmc-pubmed.ttl is older than output/tsv/pmc-pubmed.tsv ## Convert output/tsv/pmc-pubmed.tsv => output/ttl/pmc-pubmed.ttl -< 2024-10-12T00:16:09 pmc-pubmed +< 2024-10-19T03:47:12 pmc-pubmed togoid-config config/pmc-pubmed convert -> 2024-10-12T00:17:17 pmc-pubmed +> 2024-10-19T03:48:26 pmc-pubmed ### Update TTL for prosite-prosite_prorule if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/prosite-prosite_prorule.ttl is newer than output/tsv/prosite-prosite_prorule.tsv # => Preserving output/ttl/prosite-prosite_prorule.ttl -### Update TTL for pubchem_compound-atc if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pubchem_compound-atc.ttl is newer than output/tsv/pubchem_compound-atc.tsv -# => Preserving output/ttl/pubchem_compound-atc.ttl -### Update TTL for pubchem_compound-chebi if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pubchem_compound-chebi.ttl is newer than output/tsv/pubchem_compound-chebi.tsv -# => Preserving output/ttl/pubchem_compound-chebi.ttl -### Update TTL for pubchem_compound-chembl_compound if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pubchem_compound-chembl_compound.ttl is newer than output/tsv/pubchem_compound-chembl_compound.tsv -# => Preserving output/ttl/pubchem_compound-chembl_compound.ttl -### Update TTL for pubchem_compound-drugbank if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pubchem_compound-drugbank.ttl is newer than output/tsv/pubchem_compound-drugbank.tsv -# => Preserving output/ttl/pubchem_compound-drugbank.ttl -### Update TTL for pubchem_compound-glytoucan if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pubchem_compound-glytoucan.ttl is newer than output/tsv/pubchem_compound-glytoucan.tsv -# => Preserving output/ttl/pubchem_compound-glytoucan.ttl -### Update TTL for pubchem_compound-inchi_key if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pubchem_compound-inchi_key.ttl is newer than output/tsv/pubchem_compound-inchi_key.tsv -# => Preserving output/ttl/pubchem_compound-inchi_key.ttl -### Update TTL for pubchem_pathway-ncbigene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pubchem_pathway-ncbigene.ttl is newer than output/tsv/pubchem_pathway-ncbigene.tsv -# => Preserving output/ttl/pubchem_pathway-ncbigene.ttl -### Update TTL for pubchem_pathway-pathbank if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pubchem_pathway-pathbank.ttl is newer than output/tsv/pubchem_pathway-pathbank.tsv -# => Preserving output/ttl/pubchem_pathway-pathbank.ttl -### Update TTL for pubchem_pathway-pubchem_compound if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pubchem_pathway-pubchem_compound.ttl is newer than output/tsv/pubchem_pathway-pubchem_compound.tsv -# => Preserving output/ttl/pubchem_pathway-pubchem_compound.ttl -### Update TTL for pubchem_pathway-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pubchem_pathway-reactome_pathway.ttl is newer than output/tsv/pubchem_pathway-reactome_pathway.tsv -# => Preserving output/ttl/pubchem_pathway-reactome_pathway.ttl -### Update TTL for pubchem_pathway-uniprot if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pubchem_pathway-uniprot.ttl is newer than output/tsv/pubchem_pathway-uniprot.tsv -# => Preserving output/ttl/pubchem_pathway-uniprot.ttl -### Update TTL for pubchem_pathway-wikipathways if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/pubchem_pathway-wikipathways.ttl is newer than output/tsv/pubchem_pathway-wikipathways.tsv -# => Preserving output/ttl/pubchem_pathway-wikipathways.ttl -### Update TTL for reactome_pathway-chebi if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/reactome_pathway-chebi.ttl is newer than output/tsv/reactome_pathway-chebi.tsv -# => Preserving output/ttl/reactome_pathway-chebi.ttl -### Update TTL for reactome_pathway-go if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/reactome_pathway-go.ttl is newer than output/tsv/reactome_pathway-go.tsv -# => Preserving output/ttl/reactome_pathway-go.ttl -### Update TTL for reactome_pathway-iuphar_ligand if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/reactome_pathway-iuphar_ligand.ttl is newer than output/tsv/reactome_pathway-iuphar_ligand.tsv -# => Preserving output/ttl/reactome_pathway-iuphar_ligand.ttl -### Update TTL for reactome_pathway-mirbase if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/reactome_pathway-mirbase.ttl is newer than output/tsv/reactome_pathway-mirbase.tsv -# => Preserving output/ttl/reactome_pathway-mirbase.ttl -### Update TTL for reactome_pathway-reactome_reaction if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/reactome_pathway-reactome_reaction.ttl is newer than output/tsv/reactome_pathway-reactome_reaction.tsv -# => Preserving output/ttl/reactome_pathway-reactome_reaction.ttl -### Update TTL for reactome_pathway-uniprot if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/reactome_pathway-uniprot.ttl is newer than output/tsv/reactome_pathway-uniprot.tsv -# => Preserving output/ttl/reactome_pathway-uniprot.ttl -### Update TTL for reactome_reaction-chebi if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/reactome_reaction-chebi.ttl is newer than output/tsv/reactome_reaction-chebi.tsv -# => Preserving output/ttl/reactome_reaction-chebi.ttl -### Update TTL for reactome_reaction-go if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/reactome_reaction-go.ttl is newer than output/tsv/reactome_reaction-go.tsv -# => Preserving output/ttl/reactome_reaction-go.ttl -### Update TTL for reactome_reaction-iuphar_ligand if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/reactome_reaction-iuphar_ligand.ttl is newer than output/tsv/reactome_reaction-iuphar_ligand.tsv -# => Preserving output/ttl/reactome_reaction-iuphar_ligand.ttl -### Update TTL for reactome_reaction-mirbase if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/reactome_reaction-mirbase.ttl is newer than output/tsv/reactome_reaction-mirbase.tsv -# => Preserving output/ttl/reactome_reaction-mirbase.ttl -### Update TTL for reactome_reaction-uniprot if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/reactome_reaction-uniprot.ttl is newer than output/tsv/reactome_reaction-uniprot.tsv -# => Preserving output/ttl/reactome_reaction-uniprot.ttl +### Update TTL for pubchem_compound-atc if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pubchem_compound-atc.ttl is older than output/tsv/pubchem_compound-atc.tsv +## Convert output/tsv/pubchem_compound-atc.tsv => output/ttl/pubchem_compound-atc.ttl +< 2024-10-19T03:48:26 pubchem_compound-atc +togoid-config config/pubchem_compound-atc convert +> 2024-10-19T03:48:26 pubchem_compound-atc +### Update TTL for pubchem_compound-chebi if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pubchem_compound-chebi.ttl is older than output/tsv/pubchem_compound-chebi.tsv +## Convert output/tsv/pubchem_compound-chebi.tsv => output/ttl/pubchem_compound-chebi.ttl +< 2024-10-19T03:48:26 pubchem_compound-chebi +togoid-config config/pubchem_compound-chebi convert +> 2024-10-19T03:48:28 pubchem_compound-chebi +### Update TTL for pubchem_compound-chembl_compound if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pubchem_compound-chembl_compound.ttl is older than output/tsv/pubchem_compound-chembl_compound.tsv +## Convert output/tsv/pubchem_compound-chembl_compound.tsv => output/ttl/pubchem_compound-chembl_compound.ttl +< 2024-10-19T03:48:28 pubchem_compound-chembl_compound +togoid-config config/pubchem_compound-chembl_compound convert +> 2024-10-19T03:48:49 pubchem_compound-chembl_compound +### Update TTL for pubchem_compound-drugbank if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pubchem_compound-drugbank.ttl is older than output/tsv/pubchem_compound-drugbank.tsv +## Convert output/tsv/pubchem_compound-drugbank.tsv => output/ttl/pubchem_compound-drugbank.ttl +< 2024-10-19T03:48:49 pubchem_compound-drugbank +togoid-config config/pubchem_compound-drugbank convert +> 2024-10-19T03:48:50 pubchem_compound-drugbank +### Update TTL for pubchem_compound-glytoucan if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pubchem_compound-glytoucan.ttl is older than output/tsv/pubchem_compound-glytoucan.tsv +## Convert output/tsv/pubchem_compound-glytoucan.tsv => output/ttl/pubchem_compound-glytoucan.ttl +< 2024-10-19T03:48:50 pubchem_compound-glytoucan +togoid-config config/pubchem_compound-glytoucan convert +> 2024-10-19T03:48:50 pubchem_compound-glytoucan +### Update TTL for pubchem_compound-inchi_key if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pubchem_compound-inchi_key.ttl is older than output/tsv/pubchem_compound-inchi_key.tsv +## Convert output/tsv/pubchem_compound-inchi_key.tsv => output/ttl/pubchem_compound-inchi_key.ttl +< 2024-10-19T03:48:50 pubchem_compound-inchi_key +togoid-config config/pubchem_compound-inchi_key convert +> 2024-10-19T04:32:08 pubchem_compound-inchi_key +### Update TTL for pubchem_pathway-ncbigene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pubchem_pathway-ncbigene.ttl is older than output/tsv/pubchem_pathway-ncbigene.tsv +## Convert output/tsv/pubchem_pathway-ncbigene.tsv => output/ttl/pubchem_pathway-ncbigene.ttl +< 2024-10-19T04:32:08 pubchem_pathway-ncbigene +togoid-config config/pubchem_pathway-ncbigene convert +> 2024-10-19T04:32:08 pubchem_pathway-ncbigene +### Update TTL for pubchem_pathway-pathbank if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pubchem_pathway-pathbank.ttl is older than output/tsv/pubchem_pathway-pathbank.tsv +## Convert output/tsv/pubchem_pathway-pathbank.tsv => output/ttl/pubchem_pathway-pathbank.ttl +< 2024-10-19T04:32:08 pubchem_pathway-pathbank +togoid-config config/pubchem_pathway-pathbank convert +> 2024-10-19T04:32:09 pubchem_pathway-pathbank +### Update TTL for pubchem_pathway-pubchem_compound if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pubchem_pathway-pubchem_compound.ttl is older than output/tsv/pubchem_pathway-pubchem_compound.tsv +## Convert output/tsv/pubchem_pathway-pubchem_compound.tsv => output/ttl/pubchem_pathway-pubchem_compound.ttl +< 2024-10-19T04:32:09 pubchem_pathway-pubchem_compound +togoid-config config/pubchem_pathway-pubchem_compound convert +> 2024-10-19T04:32:19 pubchem_pathway-pubchem_compound +### Update TTL for pubchem_pathway-reactome_pathway if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pubchem_pathway-reactome_pathway.ttl is older than output/tsv/pubchem_pathway-reactome_pathway.tsv +## Convert output/tsv/pubchem_pathway-reactome_pathway.tsv => output/ttl/pubchem_pathway-reactome_pathway.ttl +< 2024-10-19T04:32:19 pubchem_pathway-reactome_pathway +togoid-config config/pubchem_pathway-reactome_pathway convert +> 2024-10-19T04:32:19 pubchem_pathway-reactome_pathway +### Update TTL for pubchem_pathway-uniprot if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pubchem_pathway-uniprot.ttl is older than output/tsv/pubchem_pathway-uniprot.tsv +## Convert output/tsv/pubchem_pathway-uniprot.tsv => output/ttl/pubchem_pathway-uniprot.ttl +< 2024-10-19T04:32:19 pubchem_pathway-uniprot +togoid-config config/pubchem_pathway-uniprot convert +> 2024-10-19T04:32:24 pubchem_pathway-uniprot +### Update TTL for pubchem_pathway-wikipathways if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/pubchem_pathway-wikipathways.ttl is older than output/tsv/pubchem_pathway-wikipathways.tsv +## Convert output/tsv/pubchem_pathway-wikipathways.tsv => output/ttl/pubchem_pathway-wikipathways.ttl +< 2024-10-19T04:32:24 pubchem_pathway-wikipathways +togoid-config config/pubchem_pathway-wikipathways convert +> 2024-10-19T04:32:24 pubchem_pathway-wikipathways +### Update TTL for reactome_pathway-chebi if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/reactome_pathway-chebi.ttl is older than output/tsv/reactome_pathway-chebi.tsv +## Convert output/tsv/reactome_pathway-chebi.tsv => output/ttl/reactome_pathway-chebi.ttl +< 2024-10-19T04:32:24 reactome_pathway-chebi +togoid-config config/reactome_pathway-chebi convert +> 2024-10-19T04:32:26 reactome_pathway-chebi +### Update TTL for reactome_pathway-go if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/reactome_pathway-go.ttl is older than output/tsv/reactome_pathway-go.tsv +## Convert output/tsv/reactome_pathway-go.tsv => output/ttl/reactome_pathway-go.ttl +< 2024-10-19T04:32:26 reactome_pathway-go +togoid-config config/reactome_pathway-go convert +> 2024-10-19T04:32:27 reactome_pathway-go +### Update TTL for reactome_pathway-iuphar_ligand if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/reactome_pathway-iuphar_ligand.ttl is older than output/tsv/reactome_pathway-iuphar_ligand.tsv +## Convert output/tsv/reactome_pathway-iuphar_ligand.tsv => output/ttl/reactome_pathway-iuphar_ligand.ttl +< 2024-10-19T04:32:27 reactome_pathway-iuphar_ligand +togoid-config config/reactome_pathway-iuphar_ligand convert +> 2024-10-19T04:32:27 reactome_pathway-iuphar_ligand +### Update TTL for reactome_pathway-mirbase if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/reactome_pathway-mirbase.ttl is older than output/tsv/reactome_pathway-mirbase.tsv +## Convert output/tsv/reactome_pathway-mirbase.tsv => output/ttl/reactome_pathway-mirbase.ttl +< 2024-10-19T04:32:27 reactome_pathway-mirbase +togoid-config config/reactome_pathway-mirbase convert +> 2024-10-19T04:32:27 reactome_pathway-mirbase +### Update TTL for reactome_pathway-reactome_reaction if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/reactome_pathway-reactome_reaction.ttl is older than output/tsv/reactome_pathway-reactome_reaction.tsv +## Convert output/tsv/reactome_pathway-reactome_reaction.tsv => output/ttl/reactome_pathway-reactome_reaction.ttl +< 2024-10-19T04:32:27 reactome_pathway-reactome_reaction +togoid-config config/reactome_pathway-reactome_reaction convert +> 2024-10-19T04:32:31 reactome_pathway-reactome_reaction +### Update TTL for reactome_pathway-uniprot if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/reactome_pathway-uniprot.ttl is older than output/tsv/reactome_pathway-uniprot.tsv +## Convert output/tsv/reactome_pathway-uniprot.tsv => output/ttl/reactome_pathway-uniprot.ttl +< 2024-10-19T04:32:31 reactome_pathway-uniprot +togoid-config config/reactome_pathway-uniprot convert +> 2024-10-19T04:32:38 reactome_pathway-uniprot +### Update TTL for reactome_reaction-chebi if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/reactome_reaction-chebi.ttl is older than output/tsv/reactome_reaction-chebi.tsv +## Convert output/tsv/reactome_reaction-chebi.tsv => output/ttl/reactome_reaction-chebi.ttl +< 2024-10-19T04:32:38 reactome_reaction-chebi +togoid-config config/reactome_reaction-chebi convert +> 2024-10-19T04:32:40 reactome_reaction-chebi +### Update TTL for reactome_reaction-go if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/reactome_reaction-go.ttl is older than output/tsv/reactome_reaction-go.tsv +## Convert output/tsv/reactome_reaction-go.tsv => output/ttl/reactome_reaction-go.ttl +< 2024-10-19T04:32:40 reactome_reaction-go +togoid-config config/reactome_reaction-go convert +> 2024-10-19T04:32:40 reactome_reaction-go +### Update TTL for reactome_reaction-iuphar_ligand if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/reactome_reaction-iuphar_ligand.ttl is older than output/tsv/reactome_reaction-iuphar_ligand.tsv +## Convert output/tsv/reactome_reaction-iuphar_ligand.tsv => output/ttl/reactome_reaction-iuphar_ligand.ttl +< 2024-10-19T04:32:40 reactome_reaction-iuphar_ligand +togoid-config config/reactome_reaction-iuphar_ligand convert +> 2024-10-19T04:32:41 reactome_reaction-iuphar_ligand +### Update TTL for reactome_reaction-mirbase if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/reactome_reaction-mirbase.ttl is older than output/tsv/reactome_reaction-mirbase.tsv +## Convert output/tsv/reactome_reaction-mirbase.tsv => output/ttl/reactome_reaction-mirbase.ttl +< 2024-10-19T04:32:41 reactome_reaction-mirbase +togoid-config config/reactome_reaction-mirbase convert +> 2024-10-19T04:32:41 reactome_reaction-mirbase +### Update TTL for reactome_reaction-uniprot if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/reactome_reaction-uniprot.ttl is older than output/tsv/reactome_reaction-uniprot.tsv +## Convert output/tsv/reactome_reaction-uniprot.tsv => output/ttl/reactome_reaction-uniprot.ttl +< 2024-10-19T04:32:41 reactome_reaction-uniprot +togoid-config config/reactome_reaction-uniprot convert +> 2024-10-19T04:32:47 reactome_reaction-uniprot ### Update TTL for refseq_protein-uniprot if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/refseq_protein-uniprot.ttl is older than output/tsv/refseq_protein-uniprot.tsv ## Convert output/tsv/refseq_protein-uniprot.tsv => output/ttl/refseq_protein-uniprot.ttl -< 2024-10-12T00:17:17 refseq_protein-uniprot +< 2024-10-19T04:32:47 refseq_protein-uniprot togoid-config config/refseq_protein-uniprot convert -> 2024-10-12T01:06:17 refseq_protein-uniprot +> 2024-10-19T05:23:42 refseq_protein-uniprot ### Update TTL for refseq_rna-dbsnp if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/refseq_rna-dbsnp.ttl is newer than output/tsv/refseq_rna-dbsnp.tsv # => Preserving output/ttl/refseq_rna-dbsnp.ttl @@ -6186,111 +7045,192 @@ togoid-config config/refseq_protein-uniprot convert ### Update TTL for rhea-uniprot if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/rhea-uniprot.ttl is newer than output/tsv/rhea-uniprot.tsv # => Preserving output/ttl/rhea-uniprot.ttl -### Update TTL for sra_accession-bioproject if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_accession-bioproject.ttl is newer than output/tsv/sra_accession-bioproject.tsv -# => Preserving output/ttl/sra_accession-bioproject.ttl -### Update TTL for sra_accession-biosample if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_accession-biosample.ttl is newer than output/tsv/sra_accession-biosample.tsv -# => Preserving output/ttl/sra_accession-biosample.ttl -### Update TTL for sra_accession-sra_analysis if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_accession-sra_analysis.ttl is newer than output/tsv/sra_accession-sra_analysis.tsv -# => Preserving output/ttl/sra_accession-sra_analysis.ttl -### Update TTL for sra_accession-sra_experiment if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_accession-sra_experiment.ttl is newer than output/tsv/sra_accession-sra_experiment.tsv -# => Preserving output/ttl/sra_accession-sra_experiment.ttl -### Update TTL for sra_accession-sra_project if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_accession-sra_project.ttl is newer than output/tsv/sra_accession-sra_project.tsv -# => Preserving output/ttl/sra_accession-sra_project.ttl -### Update TTL for sra_accession-sra_run if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_accession-sra_run.ttl is newer than output/tsv/sra_accession-sra_run.tsv -# => Preserving output/ttl/sra_accession-sra_run.ttl -### Update TTL for sra_accession-sra_sample if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_accession-sra_sample.ttl is newer than output/tsv/sra_accession-sra_sample.tsv -# => Preserving output/ttl/sra_accession-sra_sample.ttl -### Update TTL for sra_experiment-bioproject if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_experiment-bioproject.ttl is newer than output/tsv/sra_experiment-bioproject.tsv -# => Preserving output/ttl/sra_experiment-bioproject.ttl -### Update TTL for sra_experiment-biosample if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_experiment-biosample.ttl is newer than output/tsv/sra_experiment-biosample.tsv -# => Preserving output/ttl/sra_experiment-biosample.ttl -### Update TTL for sra_experiment-sra_project if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_experiment-sra_project.ttl is newer than output/tsv/sra_experiment-sra_project.tsv -# => Preserving output/ttl/sra_experiment-sra_project.ttl -### Update TTL for sra_experiment-sra_sample if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_experiment-sra_sample.ttl is newer than output/tsv/sra_experiment-sra_sample.tsv -# => Preserving output/ttl/sra_experiment-sra_sample.ttl -### Update TTL for sra_project-bioproject if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_project-bioproject.ttl is newer than output/tsv/sra_project-bioproject.tsv -# => Preserving output/ttl/sra_project-bioproject.ttl -### Update TTL for sra_run-bioproject if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_run-bioproject.ttl is newer than output/tsv/sra_run-bioproject.tsv -# => Preserving output/ttl/sra_run-bioproject.ttl -### Update TTL for sra_run-biosample if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_run-biosample.ttl is newer than output/tsv/sra_run-biosample.tsv -# => Preserving output/ttl/sra_run-biosample.ttl -### Update TTL for sra_run-sra_experiment if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_run-sra_experiment.ttl is newer than output/tsv/sra_run-sra_experiment.tsv -# => Preserving output/ttl/sra_run-sra_experiment.ttl -### Update TTL for sra_run-sra_project if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_run-sra_project.ttl is newer than output/tsv/sra_run-sra_project.tsv -# => Preserving output/ttl/sra_run-sra_project.ttl -### Update TTL for sra_run-sra_sample if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_run-sra_sample.ttl is newer than output/tsv/sra_run-sra_sample.tsv -# => Preserving output/ttl/sra_run-sra_sample.ttl -### Update TTL for sra_sample-biosample if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/sra_sample-biosample.ttl is newer than output/tsv/sra_sample-biosample.tsv -# => Preserving output/ttl/sra_sample-biosample.ttl +### Update TTL for sra_accession-bioproject if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_accession-bioproject.ttl is older than output/tsv/sra_accession-bioproject.tsv +## Convert output/tsv/sra_accession-bioproject.tsv => output/ttl/sra_accession-bioproject.ttl +< 2024-10-19T05:23:43 sra_accession-bioproject +togoid-config config/sra_accession-bioproject convert +> 2024-10-19T05:23:47 sra_accession-bioproject +### Update TTL for sra_accession-biosample if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_accession-biosample.ttl is older than output/tsv/sra_accession-biosample.tsv +## Convert output/tsv/sra_accession-biosample.tsv => output/ttl/sra_accession-biosample.ttl +< 2024-10-19T05:23:47 sra_accession-biosample +togoid-config config/sra_accession-biosample convert +> 2024-10-19T05:29:28 sra_accession-biosample +### Update TTL for sra_accession-sra_analysis if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_accession-sra_analysis.ttl is older than output/tsv/sra_accession-sra_analysis.tsv +## Convert output/tsv/sra_accession-sra_analysis.tsv => output/ttl/sra_accession-sra_analysis.ttl +< 2024-10-19T05:29:28 sra_accession-sra_analysis +togoid-config config/sra_accession-sra_analysis convert +> 2024-10-19T05:29:31 sra_accession-sra_analysis +### Update TTL for sra_accession-sra_experiment if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_accession-sra_experiment.ttl is older than output/tsv/sra_accession-sra_experiment.tsv +## Convert output/tsv/sra_accession-sra_experiment.tsv => output/ttl/sra_accession-sra_experiment.ttl +< 2024-10-19T05:29:31 sra_accession-sra_experiment +togoid-config config/sra_accession-sra_experiment convert +> 2024-10-19T05:35:54 sra_accession-sra_experiment +### Update TTL for sra_accession-sra_project if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_accession-sra_project.ttl is older than output/tsv/sra_accession-sra_project.tsv +## Convert output/tsv/sra_accession-sra_project.tsv => output/ttl/sra_accession-sra_project.ttl +< 2024-10-19T05:35:54 sra_accession-sra_project +togoid-config config/sra_accession-sra_project convert +> 2024-10-19T05:35:59 sra_accession-sra_project +### Update TTL for sra_accession-sra_run if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_accession-sra_run.ttl is older than output/tsv/sra_accession-sra_run.tsv +## Convert output/tsv/sra_accession-sra_run.tsv => output/ttl/sra_accession-sra_run.ttl +< 2024-10-19T05:35:59 sra_accession-sra_run +togoid-config config/sra_accession-sra_run convert +> 2024-10-19T05:42:44 sra_accession-sra_run +### Update TTL for sra_accession-sra_sample if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_accession-sra_sample.ttl is older than output/tsv/sra_accession-sra_sample.tsv +## Convert output/tsv/sra_accession-sra_sample.tsv => output/ttl/sra_accession-sra_sample.ttl +< 2024-10-19T05:42:44 sra_accession-sra_sample +togoid-config config/sra_accession-sra_sample convert +> 2024-10-19T05:47:46 sra_accession-sra_sample +### Update TTL for sra_experiment-bioproject if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_experiment-bioproject.ttl is older than output/tsv/sra_experiment-bioproject.tsv +## Convert output/tsv/sra_experiment-bioproject.tsv => output/ttl/sra_experiment-bioproject.ttl +< 2024-10-19T05:47:46 sra_experiment-bioproject +togoid-config config/sra_experiment-bioproject convert +> 2024-10-19T05:53:19 sra_experiment-bioproject +### Update TTL for sra_experiment-biosample if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_experiment-biosample.ttl is older than output/tsv/sra_experiment-biosample.tsv +## Convert output/tsv/sra_experiment-biosample.tsv => output/ttl/sra_experiment-biosample.ttl +< 2024-10-19T05:53:19 sra_experiment-biosample +togoid-config config/sra_experiment-biosample convert +> 2024-10-19T05:58:12 sra_experiment-biosample +### Update TTL for sra_experiment-sra_project if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_experiment-sra_project.ttl is older than output/tsv/sra_experiment-sra_project.tsv +## Convert output/tsv/sra_experiment-sra_project.tsv => output/ttl/sra_experiment-sra_project.ttl +< 2024-10-19T05:58:12 sra_experiment-sra_project +togoid-config config/sra_experiment-sra_project convert +> 2024-10-19T06:03:51 sra_experiment-sra_project +### Update TTL for sra_experiment-sra_sample if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_experiment-sra_sample.ttl is older than output/tsv/sra_experiment-sra_sample.tsv +## Convert output/tsv/sra_experiment-sra_sample.tsv => output/ttl/sra_experiment-sra_sample.ttl +< 2024-10-19T06:03:51 sra_experiment-sra_sample +togoid-config config/sra_experiment-sra_sample convert +> 2024-10-19T06:09:44 sra_experiment-sra_sample +### Update TTL for sra_project-bioproject if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_project-bioproject.ttl is older than output/tsv/sra_project-bioproject.tsv +## Convert output/tsv/sra_project-bioproject.tsv => output/ttl/sra_project-bioproject.ttl +< 2024-10-19T06:09:44 sra_project-bioproject +togoid-config config/sra_project-bioproject convert +> 2024-10-19T06:09:49 sra_project-bioproject +### Update TTL for sra_run-bioproject if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_run-bioproject.ttl is older than output/tsv/sra_run-bioproject.tsv +## Convert output/tsv/sra_run-bioproject.tsv => output/ttl/sra_run-bioproject.ttl +< 2024-10-19T06:09:49 sra_run-bioproject +togoid-config config/sra_run-bioproject convert +> 2024-10-19T06:15:23 sra_run-bioproject +### Update TTL for sra_run-biosample if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_run-biosample.ttl is older than output/tsv/sra_run-biosample.tsv +## Convert output/tsv/sra_run-biosample.tsv => output/ttl/sra_run-biosample.ttl +< 2024-10-19T06:15:23 sra_run-biosample +togoid-config config/sra_run-biosample convert +> 2024-10-19T06:20:28 sra_run-biosample +### Update TTL for sra_run-sra_experiment if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_run-sra_experiment.ttl is older than output/tsv/sra_run-sra_experiment.tsv +## Convert output/tsv/sra_run-sra_experiment.tsv => output/ttl/sra_run-sra_experiment.ttl +< 2024-10-19T06:20:28 sra_run-sra_experiment +togoid-config config/sra_run-sra_experiment convert +> 2024-10-19T06:26:32 sra_run-sra_experiment +### Update TTL for sra_run-sra_project if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_run-sra_project.ttl is older than output/tsv/sra_run-sra_project.tsv +## Convert output/tsv/sra_run-sra_project.tsv => output/ttl/sra_run-sra_project.ttl +< 2024-10-19T06:26:32 sra_run-sra_project +togoid-config config/sra_run-sra_project convert +> 2024-10-19T06:31:33 sra_run-sra_project +### Update TTL for sra_run-sra_sample if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_run-sra_sample.ttl is older than output/tsv/sra_run-sra_sample.tsv +## Convert output/tsv/sra_run-sra_sample.tsv => output/ttl/sra_run-sra_sample.ttl +< 2024-10-19T06:31:33 sra_run-sra_sample +togoid-config config/sra_run-sra_sample convert +> 2024-10-19T06:37:23 sra_run-sra_sample +### Update TTL for sra_sample-biosample if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/sra_sample-biosample.ttl is older than output/tsv/sra_sample-biosample.tsv +## Convert output/tsv/sra_sample-biosample.tsv => output/ttl/sra_sample-biosample.ttl +< 2024-10-19T06:37:23 sra_sample-biosample +togoid-config config/sra_sample-biosample convert +> 2024-10-19T06:42:35 sra_sample-biosample ### Update TTL for swisslipids-chebi if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-chebi.ttl is older than output/tsv/swisslipids-chebi.tsv ## Convert output/tsv/swisslipids-chebi.tsv => output/ttl/swisslipids-chebi.ttl -< 2024-10-12T01:06:17 swisslipids-chebi +< 2024-10-19T06:42:35 swisslipids-chebi togoid-config config/swisslipids-chebi convert -> 2024-10-12T01:06:17 swisslipids-chebi +> 2024-10-19T06:42:36 swisslipids-chebi ### Update TTL for swisslipids-hmdb if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-hmdb.ttl is older than output/tsv/swisslipids-hmdb.tsv ## Convert output/tsv/swisslipids-hmdb.tsv => output/ttl/swisslipids-hmdb.ttl -< 2024-10-12T01:06:17 swisslipids-hmdb +< 2024-10-19T06:42:36 swisslipids-hmdb togoid-config config/swisslipids-hmdb convert -> 2024-10-12T01:06:18 swisslipids-hmdb +> 2024-10-19T06:42:36 swisslipids-hmdb ### Update TTL for swisslipids-inchi_key if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/swisslipids-inchi_key.ttl is older than output/tsv/swisslipids-inchi_key.tsv ## Convert output/tsv/swisslipids-inchi_key.tsv => output/ttl/swisslipids-inchi_key.ttl -< 2024-10-12T01:06:18 swisslipids-inchi_key +< 2024-10-19T06:42:36 swisslipids-inchi_key togoid-config config/swisslipids-inchi_key convert -> 2024-10-12T01:06:23 swisslipids-inchi_key +> 2024-10-19T06:42:42 swisslipids-inchi_key ### Update TTL for taxonomy-pubmed if check_ttl_filesize false or check_ttl_timestamp true # File output/ttl/taxonomy-pubmed.ttl is older than output/tsv/taxonomy-pubmed.tsv ## Convert output/tsv/taxonomy-pubmed.tsv => output/ttl/taxonomy-pubmed.ttl -< 2024-10-12T01:06:23 taxonomy-pubmed +< 2024-10-19T06:42:42 taxonomy-pubmed togoid-config config/taxonomy-pubmed convert -> 2024-10-12T01:06:24 taxonomy-pubmed -### Update TTL for togovar-clinvar if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/togovar-clinvar.ttl is newer than output/tsv/togovar-clinvar.tsv -# => Preserving output/ttl/togovar-clinvar.ttl -### Update TTL for togovar-dbsnp if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/togovar-dbsnp.ttl is newer than output/tsv/togovar-dbsnp.tsv -# => Preserving output/ttl/togovar-dbsnp.ttl -### Update TTL for togovar-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/togovar-ensembl_gene.ttl is newer than output/tsv/togovar-ensembl_gene.tsv -# => Preserving output/ttl/togovar-ensembl_gene.ttl -### Update TTL for togovar-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/togovar-ensembl_transcript.ttl is newer than output/tsv/togovar-ensembl_transcript.tsv -# => Preserving output/ttl/togovar-ensembl_transcript.ttl -### Update TTL for togovar-hgnc if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/togovar-hgnc.ttl is newer than output/tsv/togovar-hgnc.tsv -# => Preserving output/ttl/togovar-hgnc.ttl -### Update TTL for togovar-ncbigene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/togovar-ncbigene.ttl is newer than output/tsv/togovar-ncbigene.tsv -# => Preserving output/ttl/togovar-ncbigene.ttl -### Update TTL for togovar-pubmed if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/togovar-pubmed.ttl is newer than output/tsv/togovar-pubmed.tsv -# => Preserving output/ttl/togovar-pubmed.ttl -### Update TTL for togovar-refseq_rna if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/togovar-refseq_rna.ttl is newer than output/tsv/togovar-refseq_rna.tsv -# => Preserving output/ttl/togovar-refseq_rna.ttl -### Update TTL for uberon-ncit_tissue if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uberon-ncit_tissue.ttl is newer than output/tsv/uberon-ncit_tissue.tsv -# => Preserving output/ttl/uberon-ncit_tissue.ttl +> 2024-10-19T06:42:43 taxonomy-pubmed +### Update TTL for togovar-clinvar if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/togovar-clinvar.ttl is older than output/tsv/togovar-clinvar.tsv +## Convert output/tsv/togovar-clinvar.tsv => output/ttl/togovar-clinvar.ttl +< 2024-10-19T06:42:43 togovar-clinvar +togoid-config config/togovar-clinvar convert +> 2024-10-19T06:42:49 togovar-clinvar +### Update TTL for togovar-dbsnp if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/togovar-dbsnp.ttl is older than output/tsv/togovar-dbsnp.tsv +## Convert output/tsv/togovar-dbsnp.tsv => output/ttl/togovar-dbsnp.ttl +< 2024-10-19T06:42:49 togovar-dbsnp +togoid-config config/togovar-dbsnp convert +> 2024-10-19T06:55:17 togovar-dbsnp +### Update TTL for togovar-ensembl_gene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/togovar-ensembl_gene.ttl is older than output/tsv/togovar-ensembl_gene.tsv +## Convert output/tsv/togovar-ensembl_gene.tsv => output/ttl/togovar-ensembl_gene.ttl +< 2024-10-19T06:55:17 togovar-ensembl_gene +togoid-config config/togovar-ensembl_gene convert +> 2024-10-19T07:14:12 togovar-ensembl_gene +### Update TTL for togovar-ensembl_transcript if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/togovar-ensembl_transcript.ttl is older than output/tsv/togovar-ensembl_transcript.tsv +## Convert output/tsv/togovar-ensembl_transcript.tsv => output/ttl/togovar-ensembl_transcript.ttl +< 2024-10-19T07:14:12 togovar-ensembl_transcript +togoid-config config/togovar-ensembl_transcript convert +> 2024-10-19T09:58:48 togovar-ensembl_transcript +### Update TTL for togovar-hgnc if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/togovar-hgnc.ttl is older than output/tsv/togovar-hgnc.tsv +## Convert output/tsv/togovar-hgnc.tsv => output/ttl/togovar-hgnc.ttl +< 2024-10-19T09:58:48 togovar-hgnc +togoid-config config/togovar-hgnc convert +> 2024-10-19T10:08:36 togovar-hgnc +### Update TTL for togovar-ncbigene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/togovar-ncbigene.ttl is older than output/tsv/togovar-ncbigene.tsv +## Convert output/tsv/togovar-ncbigene.tsv => output/ttl/togovar-ncbigene.ttl +< 2024-10-19T10:08:36 togovar-ncbigene +togoid-config config/togovar-ncbigene convert +> 2024-10-19T10:18:28 togovar-ncbigene +### Update TTL for togovar-pubmed if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/togovar-pubmed.ttl is older than output/tsv/togovar-pubmed.tsv +## Convert output/tsv/togovar-pubmed.tsv => output/ttl/togovar-pubmed.ttl +< 2024-10-19T10:18:28 togovar-pubmed +togoid-config config/togovar-pubmed convert +> 2024-10-19T10:18:33 togovar-pubmed +### Update TTL for togovar-refseq_rna if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/togovar-refseq_rna.ttl is older than output/tsv/togovar-refseq_rna.tsv +## Convert output/tsv/togovar-refseq_rna.tsv => output/ttl/togovar-refseq_rna.ttl +< 2024-10-19T10:18:33 togovar-refseq_rna +togoid-config config/togovar-refseq_rna convert +> 2024-10-19T11:02:58 togovar-refseq_rna +### Update TTL for uberon-ncit_tissue if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uberon-ncit_tissue.ttl is older than output/tsv/uberon-ncit_tissue.tsv +## Convert output/tsv/uberon-ncit_tissue.tsv => output/ttl/uberon-ncit_tissue.ttl +< 2024-10-19T11:02:58 uberon-ncit_tissue +togoid-config config/uberon-ncit_tissue convert +> 2024-10-19T11:02:58 uberon-ncit_tissue ### Update TTL for uniprot-chembl_target if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/uniprot-chembl_target.ttl is newer than output/tsv/uniprot-chembl_target.tsv # => Preserving output/ttl/uniprot-chembl_target.ttl @@ -6351,30 +7291,51 @@ togoid-config config/taxonomy-pubmed convert ### Update TTL for uniprot-uniprot_mnemonic if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/uniprot-uniprot_mnemonic.ttl is newer than output/tsv/uniprot-uniprot_mnemonic.tsv # => Preserving output/ttl/uniprot-uniprot_mnemonic.ttl -### Update TTL for uniprot_reference_proteome-assembly_insdc if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot_reference_proteome-assembly_insdc.ttl is newer than output/tsv/uniprot_reference_proteome-assembly_insdc.tsv -# => Preserving output/ttl/uniprot_reference_proteome-assembly_insdc.ttl -### Update TTL for uniprot_reference_proteome-assembly_refseq if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot_reference_proteome-assembly_refseq.ttl is newer than output/tsv/uniprot_reference_proteome-assembly_refseq.tsv -# => Preserving output/ttl/uniprot_reference_proteome-assembly_refseq.ttl -### Update TTL for uniprot_reference_proteome-taxonomy if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/uniprot_reference_proteome-taxonomy.ttl is newer than output/tsv/uniprot_reference_proteome-taxonomy.tsv -# => Preserving output/ttl/uniprot_reference_proteome-taxonomy.ttl +### Update TTL for uniprot_reference_proteome-assembly_insdc if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot_reference_proteome-assembly_insdc.ttl is older than output/tsv/uniprot_reference_proteome-assembly_insdc.tsv +## Convert output/tsv/uniprot_reference_proteome-assembly_insdc.tsv => output/ttl/uniprot_reference_proteome-assembly_insdc.ttl +< 2024-10-19T11:02:58 uniprot_reference_proteome-assembly_insdc +togoid-config config/uniprot_reference_proteome-assembly_insdc convert +> 2024-10-19T11:03:04 uniprot_reference_proteome-assembly_insdc +### Update TTL for uniprot_reference_proteome-assembly_refseq if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot_reference_proteome-assembly_refseq.ttl is older than output/tsv/uniprot_reference_proteome-assembly_refseq.tsv +## Convert output/tsv/uniprot_reference_proteome-assembly_refseq.tsv => output/ttl/uniprot_reference_proteome-assembly_refseq.ttl +< 2024-10-19T11:03:04 uniprot_reference_proteome-assembly_refseq +togoid-config config/uniprot_reference_proteome-assembly_refseq convert +> 2024-10-19T11:03:04 uniprot_reference_proteome-assembly_refseq +### Update TTL for uniprot_reference_proteome-taxonomy if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/uniprot_reference_proteome-taxonomy.ttl is older than output/tsv/uniprot_reference_proteome-taxonomy.tsv +## Convert output/tsv/uniprot_reference_proteome-taxonomy.tsv => output/ttl/uniprot_reference_proteome-taxonomy.ttl +< 2024-10-19T11:03:04 uniprot_reference_proteome-taxonomy +togoid-config config/uniprot_reference_proteome-taxonomy convert +> 2024-10-19T11:03:10 uniprot_reference_proteome-taxonomy ### Update TTL for wikipathways-chebi if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/wikipathways-chebi.ttl is newer than output/tsv/wikipathways-chebi.tsv # => Preserving output/ttl/wikipathways-chebi.ttl -### Update TTL for wikipathways-doid if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/wikipathways-doid.ttl is newer than output/tsv/wikipathways-doid.tsv -# => Preserving output/ttl/wikipathways-doid.ttl -### Update TTL for wikipathways-hmdb if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/wikipathways-hmdb.ttl is newer than output/tsv/wikipathways-hmdb.tsv -# => Preserving output/ttl/wikipathways-hmdb.ttl -### Update TTL for wikipathways-lipidmaps if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/wikipathways-lipidmaps.ttl is newer than output/tsv/wikipathways-lipidmaps.tsv -# => Preserving output/ttl/wikipathways-lipidmaps.ttl -### Update TTL for wikipathways-ncbigene if check_ttl_filesize false or check_ttl_timestamp false -# File output/ttl/wikipathways-ncbigene.ttl is newer than output/tsv/wikipathways-ncbigene.tsv -# => Preserving output/ttl/wikipathways-ncbigene.ttl +### Update TTL for wikipathways-doid if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/wikipathways-doid.ttl is older than output/tsv/wikipathways-doid.tsv +## Convert output/tsv/wikipathways-doid.tsv => output/ttl/wikipathways-doid.ttl +< 2024-10-19T11:03:10 wikipathways-doid +togoid-config config/wikipathways-doid convert +> 2024-10-19T11:03:10 wikipathways-doid +### Update TTL for wikipathways-hmdb if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/wikipathways-hmdb.ttl is older than output/tsv/wikipathways-hmdb.tsv +## Convert output/tsv/wikipathways-hmdb.tsv => output/ttl/wikipathways-hmdb.ttl +< 2024-10-19T11:03:10 wikipathways-hmdb +togoid-config config/wikipathways-hmdb convert +> 2024-10-19T11:03:11 wikipathways-hmdb +### Update TTL for wikipathways-lipidmaps if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/wikipathways-lipidmaps.ttl is older than output/tsv/wikipathways-lipidmaps.tsv +## Convert output/tsv/wikipathways-lipidmaps.tsv => output/ttl/wikipathways-lipidmaps.ttl +< 2024-10-19T11:03:11 wikipathways-lipidmaps +togoid-config config/wikipathways-lipidmaps convert +> 2024-10-19T11:03:11 wikipathways-lipidmaps +### Update TTL for wikipathways-ncbigene if check_ttl_filesize false or check_ttl_timestamp true +# File output/ttl/wikipathways-ncbigene.ttl is older than output/tsv/wikipathways-ncbigene.tsv +## Convert output/tsv/wikipathways-ncbigene.tsv => output/ttl/wikipathways-ncbigene.ttl +< 2024-10-19T11:03:11 wikipathways-ncbigene +togoid-config config/wikipathways-ncbigene convert +> 2024-10-19T11:03:11 wikipathways-ncbigene ### Update TTL for wikipathways-uniprot if check_ttl_filesize false or check_ttl_timestamp false # File output/ttl/wikipathways-uniprot.ttl is newer than output/tsv/wikipathways-uniprot.tsv # => Preserving output/ttl/wikipathways-uniprot.ttl @@ -6383,12 +7344,12 @@ Rule for TTL (output/ttl/bioproject-biosample.ttl) Investigating output/ttl/bioproject-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:51:35 +0900 +timestamp: 2024-10-19 00:25:45 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/bioproject-biosample.tsv (2024-10-11 20:11:12 +0900) -latest-prerequisite time: 2024-10-11 20:11:12 +0900 +--output/tsv/bioproject-biosample.tsv (2024-10-18 20:16:34 +0900) +latest-prerequisite time: 2024-10-18 20:16:34 +0900 ................................ Rule for TTL (output/ttl/bioproject-geo_series.ttl) @@ -6396,12 +7357,12 @@ Rule for TTL (output/ttl/bioproject-geo_series.ttl) Investigating output/ttl/bioproject-geo_series.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:51:37 +0900 +timestamp: 2024-10-19 00:25:47 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/bioproject-geo_series.tsv (2024-10-11 20:11:13 +0900) -latest-prerequisite time: 2024-10-11 20:11:13 +0900 +--output/tsv/bioproject-geo_series.tsv (2024-10-18 20:16:36 +0900) +latest-prerequisite time: 2024-10-18 20:16:36 +0900 ................................ Rule for TTL (output/ttl/bioproject-pubmed.ttl) @@ -6409,12 +7370,12 @@ Rule for TTL (output/ttl/bioproject-pubmed.ttl) Investigating output/ttl/bioproject-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:51:39 +0900 +timestamp: 2024-10-19 00:25:50 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/bioproject-pubmed.tsv (2024-10-11 20:11:15 +0900) -latest-prerequisite time: 2024-10-11 20:11:15 +0900 +--output/tsv/bioproject-pubmed.tsv (2024-10-18 20:16:38 +0900) +latest-prerequisite time: 2024-10-18 20:16:38 +0900 ................................ Rule for TTL (output/ttl/bioproject_umbrella-bioproject.ttl) @@ -6422,12 +7383,12 @@ Rule for TTL (output/ttl/bioproject_umbrella-bioproject.ttl) Investigating output/ttl/bioproject_umbrella-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:51:40 +0900 +timestamp: 2024-10-19 00:25:51 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/bioproject_umbrella-bioproject.tsv (2024-10-11 20:11:15 +0900) -latest-prerequisite time: 2024-10-11 20:11:15 +0900 +--output/tsv/bioproject_umbrella-bioproject.tsv (2024-10-18 20:16:38 +0900) +latest-prerequisite time: 2024-10-18 20:16:38 +0900 ................................ Rule for TTL (output/ttl/biosample-bioproject.ttl) @@ -6435,12 +7396,12 @@ Rule for TTL (output/ttl/biosample-bioproject.ttl) Investigating output/ttl/biosample-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:54:24 +0900 +timestamp: 2024-10-19 00:28:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/biosample-bioproject.tsv (2024-10-11 20:13:10 +0900) -latest-prerequisite time: 2024-10-11 20:13:10 +0900 +--output/tsv/biosample-bioproject.tsv (2024-10-18 20:18:45 +0900) +latest-prerequisite time: 2024-10-18 20:18:45 +0900 ................................ Rule for TTL (output/ttl/biosample-geo_sample.ttl) @@ -6448,12 +7409,12 @@ Rule for TTL (output/ttl/biosample-geo_sample.ttl) Investigating output/ttl/biosample-geo_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:55:43 +0900 +timestamp: 2024-10-19 00:29:51 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/biosample-geo_sample.tsv (2024-10-11 20:14:45 +0900) -latest-prerequisite time: 2024-10-11 20:14:45 +0900 +--output/tsv/biosample-geo_sample.tsv (2024-10-18 20:20:17 +0900) +latest-prerequisite time: 2024-10-18 20:20:17 +0900 ................................ Rule for TTL (output/ttl/cellosaurus-ncit_disease.ttl) @@ -6500,12 +7461,12 @@ Rule for TTL (output/ttl/clinvar-dbsnp.ttl) Investigating output/ttl/clinvar-dbsnp.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:57:30 +0900 +timestamp: 2024-10-19 00:31:40 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/clinvar-dbsnp.tsv (2024-10-11 20:31:39 +0900) -latest-prerequisite time: 2024-10-11 20:31:39 +0900 +--output/tsv/clinvar-dbsnp.tsv (2024-10-18 20:37:08 +0900) +latest-prerequisite time: 2024-10-18 20:37:08 +0900 ................................ Rule for TTL (output/ttl/clinvar-hgnc.ttl) @@ -6513,12 +7474,12 @@ Rule for TTL (output/ttl/clinvar-hgnc.ttl) Investigating output/ttl/clinvar-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:57:51 +0900 +timestamp: 2024-10-19 00:32:02 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/clinvar-hgnc.tsv (2024-10-11 20:32:31 +0900) -latest-prerequisite time: 2024-10-11 20:32:31 +0900 +--output/tsv/clinvar-hgnc.tsv (2024-10-18 20:38:02 +0900) +latest-prerequisite time: 2024-10-18 20:38:02 +0900 ................................ Rule for TTL (output/ttl/clinvar-medgen.ttl) @@ -6526,12 +7487,12 @@ Rule for TTL (output/ttl/clinvar-medgen.ttl) Investigating output/ttl/clinvar-medgen.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:58:20 +0900 +timestamp: 2024-10-19 00:32:33 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/clinvar-medgen.tsv (2024-10-11 20:34:06 +0900) -latest-prerequisite time: 2024-10-11 20:34:06 +0900 +--output/tsv/clinvar-medgen.tsv (2024-10-18 20:39:36 +0900) +latest-prerequisite time: 2024-10-18 20:39:36 +0900 ................................ Rule for TTL (output/ttl/clinvar-mondo.ttl) @@ -6539,12 +7500,12 @@ Rule for TTL (output/ttl/clinvar-mondo.ttl) Investigating output/ttl/clinvar-mondo.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:58:34 +0900 +timestamp: 2024-10-19 00:32:47 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/clinvar-mondo.tsv (2024-10-11 20:35:35 +0900) -latest-prerequisite time: 2024-10-11 20:35:35 +0900 +--output/tsv/clinvar-mondo.tsv (2024-10-18 20:41:06 +0900) +latest-prerequisite time: 2024-10-18 20:41:06 +0900 ................................ Rule for TTL (output/ttl/clinvar-ncbigene.ttl) @@ -6552,12 +7513,12 @@ Rule for TTL (output/ttl/clinvar-ncbigene.ttl) Investigating output/ttl/clinvar-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:58:55 +0900 +timestamp: 2024-10-19 00:33:10 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/clinvar-ncbigene.tsv (2024-10-11 20:36:26 +0900) -latest-prerequisite time: 2024-10-11 20:36:26 +0900 +--output/tsv/clinvar-ncbigene.tsv (2024-10-18 20:41:57 +0900) +latest-prerequisite time: 2024-10-18 20:41:57 +0900 ................................ Rule for TTL (output/ttl/clinvar-omim_phenotype.ttl) @@ -6565,12 +7526,12 @@ Rule for TTL (output/ttl/clinvar-omim_phenotype.ttl) Investigating output/ttl/clinvar-omim_phenotype.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:59:07 +0900 +timestamp: 2024-10-19 00:33:23 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/clinvar-omim_phenotype.tsv (2024-10-11 20:37:57 +0900) -latest-prerequisite time: 2024-10-11 20:37:57 +0900 +--output/tsv/clinvar-omim_phenotype.tsv (2024-10-18 20:43:27 +0900) +latest-prerequisite time: 2024-10-18 20:43:27 +0900 ................................ Rule for TTL (output/ttl/clinvar-orphanet_phenotype.ttl) @@ -6578,12 +7539,12 @@ Rule for TTL (output/ttl/clinvar-orphanet_phenotype.ttl) Investigating output/ttl/clinvar-orphanet_phenotype.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:59:20 +0900 +timestamp: 2024-10-19 00:33:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/clinvar-orphanet_phenotype.tsv (2024-10-11 20:39:26 +0900) -latest-prerequisite time: 2024-10-11 20:39:26 +0900 +--output/tsv/clinvar-orphanet_phenotype.tsv (2024-10-18 20:44:56 +0900) +latest-prerequisite time: 2024-10-18 20:44:56 +0900 ................................ Rule for TTL (output/ttl/clinvar-uniprot.ttl) @@ -6591,12 +7552,12 @@ Rule for TTL (output/ttl/clinvar-uniprot.ttl) Investigating output/ttl/clinvar-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:59:21 +0900 +timestamp: 2024-10-19 00:33:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/clinvar-uniprot.tsv (2024-10-11 20:40:15 +0900) -latest-prerequisite time: 2024-10-11 20:40:15 +0900 +--output/tsv/clinvar-uniprot.tsv (2024-10-18 20:45:46 +0900) +latest-prerequisite time: 2024-10-18 20:45:46 +0900 ................................ Rule for TTL (output/ttl/cog-insdc.ttl) @@ -6630,12 +7591,12 @@ Rule for TTL (output/ttl/ensembl_gene-affy_probeset.ttl) Investigating output/ttl/ensembl_gene-affy_probeset.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 21:59:22 +0900 +timestamp: 2024-10-19 00:33:39 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ensembl_gene-affy_probeset.tsv (2024-10-11 20:41:08 +0900) -latest-prerequisite time: 2024-10-11 20:41:08 +0900 +--output/tsv/ensembl_gene-affy_probeset.tsv (2024-10-18 20:54:13 +0900) +latest-prerequisite time: 2024-10-18 20:54:13 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ensembl_protein.ttl) @@ -6643,12 +7604,12 @@ Rule for TTL (output/ttl/ensembl_gene-ensembl_protein.ttl) Investigating output/ttl/ensembl_gene-ensembl_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 22:01:27 +0900 +timestamp: 2024-10-19 00:35:46 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ensembl_gene-ensembl_protein.tsv (2024-10-11 20:42:56 +0900) -latest-prerequisite time: 2024-10-11 20:42:56 +0900 +--output/tsv/ensembl_gene-ensembl_protein.tsv (2024-10-18 20:56:06 +0900) +latest-prerequisite time: 2024-10-18 20:56:06 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ensembl_transcript.ttl) @@ -6656,12 +7617,12 @@ Rule for TTL (output/ttl/ensembl_gene-ensembl_transcript.ttl) Investigating output/ttl/ensembl_gene-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 22:04:00 +0900 +timestamp: 2024-10-19 00:38:27 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ensembl_gene-ensembl_transcript.tsv (2024-10-11 20:44:56 +0900) -latest-prerequisite time: 2024-10-11 20:44:56 +0900 +--output/tsv/ensembl_gene-ensembl_transcript.tsv (2024-10-18 20:58:09 +0900) +latest-prerequisite time: 2024-10-18 20:58:09 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-hgnc.ttl) @@ -6669,12 +7630,12 @@ Rule for TTL (output/ttl/ensembl_gene-hgnc.ttl) Investigating output/ttl/ensembl_gene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 22:04:01 +0900 +timestamp: 2024-10-19 00:38:28 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ensembl_gene-hgnc.tsv (2024-10-11 20:44:57 +0900) -latest-prerequisite time: 2024-10-11 20:44:57 +0900 +--output/tsv/ensembl_gene-hgnc.tsv (2024-10-18 20:58:10 +0900) +latest-prerequisite time: 2024-10-18 20:58:10 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-ncbigene.ttl) @@ -6682,12 +7643,12 @@ Rule for TTL (output/ttl/ensembl_gene-ncbigene.ttl) Investigating output/ttl/ensembl_gene-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 22:06:20 +0900 +timestamp: 2024-10-19 00:40:43 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ensembl_gene-ncbigene.tsv (2024-10-11 20:46:54 +0900) -latest-prerequisite time: 2024-10-11 20:46:54 +0900 +--output/tsv/ensembl_gene-ncbigene.tsv (2024-10-18 21:00:06 +0900) +latest-prerequisite time: 2024-10-18 21:00:06 +0900 ................................ Rule for TTL (output/ttl/ensembl_gene-uniprot.ttl) @@ -6695,12 +7656,12 @@ Rule for TTL (output/ttl/ensembl_gene-uniprot.ttl) Investigating output/ttl/ensembl_gene-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 22:07:07 +0900 +timestamp: 2024-10-19 00:41:31 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ensembl_gene-uniprot.tsv (2024-10-11 20:48:20 +0900) -latest-prerequisite time: 2024-10-11 20:48:20 +0900 +--output/tsv/ensembl_gene-uniprot.tsv (2024-10-18 21:01:30 +0900) +latest-prerequisite time: 2024-10-18 21:01:30 +0900 ................................ Rule for TTL (output/ttl/ensembl_protein-ensembl_transcript.ttl) @@ -6708,12 +7669,12 @@ Rule for TTL (output/ttl/ensembl_protein-ensembl_transcript.ttl) Investigating output/ttl/ensembl_protein-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 22:09:08 +0900 +timestamp: 2024-10-19 00:43:42 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ensembl_protein-ensembl_transcript.tsv (2024-10-11 20:50:12 +0900) -latest-prerequisite time: 2024-10-11 20:50:12 +0900 +--output/tsv/ensembl_protein-ensembl_transcript.tsv (2024-10-18 21:03:26 +0900) +latest-prerequisite time: 2024-10-18 21:03:26 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-affy_probeset.ttl) @@ -6721,12 +7682,12 @@ Rule for TTL (output/ttl/ensembl_transcript-affy_probeset.ttl) Investigating output/ttl/ensembl_transcript-affy_probeset.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 22:09:11 +0900 +timestamp: 2024-10-19 00:43:46 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ensembl_transcript-affy_probeset.tsv (2024-10-11 20:51:08 +0900) -latest-prerequisite time: 2024-10-11 20:51:08 +0900 +--output/tsv/ensembl_transcript-affy_probeset.tsv (2024-10-18 21:11:40 +0900) +latest-prerequisite time: 2024-10-18 21:11:40 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-go.ttl) @@ -6734,12 +7695,12 @@ Rule for TTL (output/ttl/ensembl_transcript-go.ttl) Investigating output/ttl/ensembl_transcript-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 22:21:05 +0900 +timestamp: 2024-10-19 00:56:18 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ensembl_transcript-go.tsv (2024-10-11 20:55:10 +0900) -latest-prerequisite time: 2024-10-11 20:55:10 +0900 +--output/tsv/ensembl_transcript-go.tsv (2024-10-18 21:15:43 +0900) +latest-prerequisite time: 2024-10-18 21:15:43 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-hgnc.ttl) @@ -6747,12 +7708,12 @@ Rule for TTL (output/ttl/ensembl_transcript-hgnc.ttl) Investigating output/ttl/ensembl_transcript-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 22:21:09 +0900 +timestamp: 2024-10-19 00:56:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ensembl_transcript-hgnc.tsv (2024-10-11 20:55:11 +0900) -latest-prerequisite time: 2024-10-11 20:55:11 +0900 +--output/tsv/ensembl_transcript-hgnc.tsv (2024-10-18 21:15:44 +0900) +latest-prerequisite time: 2024-10-18 21:15:44 +0900 ................................ Rule for TTL (output/ttl/ensembl_transcript-refseq_rna.ttl) @@ -6760,12 +7721,12 @@ Rule for TTL (output/ttl/ensembl_transcript-refseq_rna.ttl) Investigating output/ttl/ensembl_transcript-refseq_rna.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 22:29:05 +0900 +timestamp: 2024-10-19 01:04:57 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ensembl_transcript-refseq_rna.tsv (2024-10-11 20:58:36 +0900) -latest-prerequisite time: 2024-10-11 20:58:36 +0900 +--output/tsv/ensembl_transcript-refseq_rna.tsv (2024-10-18 21:19:07 +0900) +latest-prerequisite time: 2024-10-18 21:19:07 +0900 ................................ Rule for TTL (output/ttl/glycomotif-glytoucan.ttl) @@ -6799,12 +7760,12 @@ Rule for TTL (output/ttl/glytoucan-ncbigene.ttl) Investigating output/ttl/glytoucan-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 22:29:06 +0900 +timestamp: 2024-10-19 01:04:59 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/glytoucan-ncbigene.tsv (2024-10-11 20:59:17 +0900) -latest-prerequisite time: 2024-10-11 20:59:17 +0900 +--output/tsv/glytoucan-ncbigene.tsv (2024-10-18 21:19:51 +0900) +latest-prerequisite time: 2024-10-18 21:19:51 +0900 ................................ Rule for TTL (output/ttl/glytoucan-uniprot.ttl) @@ -6812,12 +7773,12 @@ Rule for TTL (output/ttl/glytoucan-uniprot.ttl) Investigating output/ttl/glytoucan-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 22:29:07 +0900 +timestamp: 2024-10-19 01:05:00 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/glytoucan-uniprot.tsv (2024-10-11 20:59:19 +0900) -latest-prerequisite time: 2024-10-11 20:59:19 +0900 +--output/tsv/glytoucan-uniprot.tsv (2024-10-18 21:19:53 +0900) +latest-prerequisite time: 2024-10-18 21:19:53 +0900 ................................ Rule for TTL (output/ttl/hgnc-ccds.ttl) @@ -6838,12 +7799,12 @@ Rule for TTL (output/ttl/hgnc-ec.ttl) Investigating output/ttl/hgnc-ec.ttl class: Rake::FileTask task needed: true -timestamp: 2024-08-31 00:41:37 +0900 +timestamp: 2024-10-19 01:05:00 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-ec.tsv (2024-08-30 21:03:04 +0900) --config/dataset.yaml (2024-09-06 11:55:18 +0900) -latest-prerequisite time: 2024-09-06 11:55:18 +0900 +--output/tsv/hgnc-ec.tsv (2024-10-18 21:19:54 +0900) +latest-prerequisite time: 2024-10-18 21:19:54 +0900 ................................ Rule for TTL (output/ttl/hgnc-ensembl_gene.ttl) @@ -6851,12 +7812,12 @@ Rule for TTL (output/ttl/hgnc-ensembl_gene.ttl) Investigating output/ttl/hgnc-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-08-31 00:41:37 +0900 +timestamp: 2024-10-19 01:05:01 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-ensembl_gene.tsv (2024-08-30 21:03:05 +0900) --config/dataset.yaml (2024-09-06 11:55:18 +0900) -latest-prerequisite time: 2024-09-06 11:55:18 +0900 +--output/tsv/hgnc-ensembl_gene.tsv (2024-10-18 21:19:55 +0900) +latest-prerequisite time: 2024-10-18 21:19:55 +0900 ................................ Rule for TTL (output/ttl/hgnc-hgnc_symbol.ttl) @@ -6864,12 +7825,12 @@ Rule for TTL (output/ttl/hgnc-hgnc_symbol.ttl) Investigating output/ttl/hgnc-hgnc_symbol.ttl class: Rake::FileTask task needed: true -timestamp: 2024-08-31 00:41:37 +0900 +timestamp: 2024-10-19 01:05:01 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-hgnc_symbol.tsv (2024-08-30 21:03:05 +0900) --config/dataset.yaml (2024-09-06 11:55:18 +0900) -latest-prerequisite time: 2024-09-06 11:55:18 +0900 +--output/tsv/hgnc-hgnc_symbol.tsv (2024-10-18 21:19:55 +0900) +latest-prerequisite time: 2024-10-18 21:19:55 +0900 ................................ Rule for TTL (output/ttl/hgnc-insdc.ttl) @@ -6877,12 +7838,12 @@ Rule for TTL (output/ttl/hgnc-insdc.ttl) Investigating output/ttl/hgnc-insdc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-08-31 00:41:38 +0900 +timestamp: 2024-10-19 01:05:01 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-insdc.tsv (2024-08-30 21:03:06 +0900) --config/dataset.yaml (2024-09-06 11:55:18 +0900) -latest-prerequisite time: 2024-09-06 11:55:18 +0900 +--output/tsv/hgnc-insdc.tsv (2024-10-18 21:19:56 +0900) +latest-prerequisite time: 2024-10-18 21:19:56 +0900 ................................ Rule for TTL (output/ttl/hgnc-lrg.ttl) @@ -6890,12 +7851,12 @@ Rule for TTL (output/ttl/hgnc-lrg.ttl) Investigating output/ttl/hgnc-lrg.ttl class: Rake::FileTask task needed: true -timestamp: 2024-08-31 00:41:38 +0900 +timestamp: 2024-10-19 01:05:02 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-lrg.tsv (2024-08-30 21:03:06 +0900) --config/dataset.yaml (2024-09-06 11:55:18 +0900) -latest-prerequisite time: 2024-09-06 11:55:18 +0900 +--output/tsv/hgnc-lrg.tsv (2024-10-18 21:19:56 +0900) +latest-prerequisite time: 2024-10-18 21:19:56 +0900 ................................ Rule for TTL (output/ttl/hgnc-mgi_gene.ttl) @@ -6903,12 +7864,12 @@ Rule for TTL (output/ttl/hgnc-mgi_gene.ttl) Investigating output/ttl/hgnc-mgi_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-08-31 00:41:38 +0900 +timestamp: 2024-10-19 01:05:02 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-mgi_gene.tsv (2024-08-30 21:03:07 +0900) --config/dataset.yaml (2024-09-06 11:55:18 +0900) -latest-prerequisite time: 2024-09-06 11:55:18 +0900 +--output/tsv/hgnc-mgi_gene.tsv (2024-10-18 21:19:57 +0900) +latest-prerequisite time: 2024-10-18 21:19:57 +0900 ................................ Rule for TTL (output/ttl/hgnc-mirbase.ttl) @@ -6916,12 +7877,12 @@ Rule for TTL (output/ttl/hgnc-mirbase.ttl) Investigating output/ttl/hgnc-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-08-31 00:41:38 +0900 +timestamp: 2024-10-19 01:05:02 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-mirbase.tsv (2024-08-30 21:03:07 +0900) --config/dataset.yaml (2024-09-06 11:55:18 +0900) -latest-prerequisite time: 2024-09-06 11:55:18 +0900 +--output/tsv/hgnc-mirbase.tsv (2024-10-18 21:19:57 +0900) +latest-prerequisite time: 2024-10-18 21:19:57 +0900 ................................ Rule for TTL (output/ttl/hgnc-ncbigene.ttl) @@ -6929,12 +7890,12 @@ Rule for TTL (output/ttl/hgnc-ncbigene.ttl) Investigating output/ttl/hgnc-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-08-31 00:41:39 +0900 +timestamp: 2024-10-19 01:05:03 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-ncbigene.tsv (2024-08-30 21:03:08 +0900) --config/dataset.yaml (2024-09-06 11:55:18 +0900) -latest-prerequisite time: 2024-09-06 11:55:18 +0900 +--output/tsv/hgnc-ncbigene.tsv (2024-10-18 21:19:58 +0900) +latest-prerequisite time: 2024-10-18 21:19:58 +0900 ................................ Rule for TTL (output/ttl/hgnc-omim_gene.ttl) @@ -6942,12 +7903,12 @@ Rule for TTL (output/ttl/hgnc-omim_gene.ttl) Investigating output/ttl/hgnc-omim_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-08-31 00:41:39 +0900 +timestamp: 2024-10-19 01:05:03 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-omim_gene.tsv (2024-08-30 21:03:08 +0900) --config/dataset.yaml (2024-09-06 11:55:18 +0900) -latest-prerequisite time: 2024-09-06 11:55:18 +0900 +--output/tsv/hgnc-omim_gene.tsv (2024-10-18 21:19:58 +0900) +latest-prerequisite time: 2024-10-18 21:19:58 +0900 ................................ Rule for TTL (output/ttl/hgnc-pubmed.ttl) @@ -6955,12 +7916,12 @@ Rule for TTL (output/ttl/hgnc-pubmed.ttl) Investigating output/ttl/hgnc-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-08-31 00:41:39 +0900 +timestamp: 2024-10-19 01:05:04 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-pubmed.tsv (2024-08-30 21:03:09 +0900) --config/dataset.yaml (2024-09-06 11:55:18 +0900) -latest-prerequisite time: 2024-09-06 11:55:18 +0900 +--output/tsv/hgnc-pubmed.tsv (2024-10-18 21:19:59 +0900) +latest-prerequisite time: 2024-10-18 21:19:59 +0900 ................................ Rule for TTL (output/ttl/hgnc-refseq_genomic.ttl) @@ -6968,12 +7929,12 @@ Rule for TTL (output/ttl/hgnc-refseq_genomic.ttl) Investigating output/ttl/hgnc-refseq_genomic.ttl class: Rake::FileTask task needed: true -timestamp: 2024-08-31 00:41:40 +0900 +timestamp: 2024-10-19 01:05:04 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-refseq_genomic.tsv (2024-08-30 21:03:09 +0900) --config/dataset.yaml (2024-09-06 11:55:18 +0900) -latest-prerequisite time: 2024-09-06 11:55:18 +0900 +--output/tsv/hgnc-refseq_genomic.tsv (2024-10-18 21:19:59 +0900) +latest-prerequisite time: 2024-10-18 21:19:59 +0900 ................................ Rule for TTL (output/ttl/hgnc-refseq_rna.ttl) @@ -6981,12 +7942,12 @@ Rule for TTL (output/ttl/hgnc-refseq_rna.ttl) Investigating output/ttl/hgnc-refseq_rna.ttl class: Rake::FileTask task needed: true -timestamp: 2024-08-31 00:41:40 +0900 +timestamp: 2024-10-19 01:05:05 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-refseq_rna.tsv (2024-08-30 21:03:10 +0900) --config/dataset.yaml (2024-09-06 11:55:18 +0900) -latest-prerequisite time: 2024-09-06 11:55:18 +0900 +--output/tsv/hgnc-refseq_rna.tsv (2024-10-18 21:20:00 +0900) +latest-prerequisite time: 2024-10-18 21:20:00 +0900 ................................ Rule for TTL (output/ttl/hgnc-rgd.ttl) @@ -6994,12 +7955,12 @@ Rule for TTL (output/ttl/hgnc-rgd.ttl) Investigating output/ttl/hgnc-rgd.ttl class: Rake::FileTask task needed: true -timestamp: 2024-08-31 00:41:40 +0900 +timestamp: 2024-10-19 01:05:05 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-rgd.tsv (2024-08-30 21:03:11 +0900) --config/dataset.yaml (2024-09-06 11:55:18 +0900) -latest-prerequisite time: 2024-09-06 11:55:18 +0900 +--output/tsv/hgnc-rgd.tsv (2024-10-18 21:20:01 +0900) +latest-prerequisite time: 2024-10-18 21:20:01 +0900 ................................ Rule for TTL (output/ttl/hgnc-uniprot.ttl) @@ -7007,12 +7968,12 @@ Rule for TTL (output/ttl/hgnc-uniprot.ttl) Investigating output/ttl/hgnc-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-08-31 00:41:41 +0900 +timestamp: 2024-10-19 01:05:05 +0900 pre-requisites: --output/ttl/ () ---output/tsv/hgnc-uniprot.tsv (2024-08-30 21:03:11 +0900) --config/dataset.yaml (2024-09-06 11:55:18 +0900) -latest-prerequisite time: 2024-09-06 11:55:18 +0900 +--output/tsv/hgnc-uniprot.tsv (2024-10-18 21:20:01 +0900) +latest-prerequisite time: 2024-10-18 21:20:01 +0900 ................................ Rule for TTL (output/ttl/hmdb-chebi.ttl) @@ -7210,45 +8171,6 @@ pre-requisites: latest-prerequisite time: 2024-10-07 00:10:25 +0900 ................................ -Rule for TTL (output/ttl/jga_study-jga_dataset.ttl) ------------------------------- -Investigating output/ttl/jga_study-jga_dataset.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 20:34:30 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/jga_study-jga_dataset.tsv (2024-10-07 00:10:27 +0900) -latest-prerequisite time: 2024-10-07 00:10:27 +0900 -................................ - -Rule for TTL (output/ttl/jga_study-nbdc_human_db.ttl) ------------------------------- -Investigating output/ttl/jga_study-nbdc_human_db.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 20:34:30 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/jga_study-nbdc_human_db.tsv (2024-10-07 00:10:27 +0900) -latest-prerequisite time: 2024-10-07 00:10:27 +0900 -................................ - -Rule for TTL (output/ttl/jga_study-pubmed.ttl) ------------------------------- -Investigating output/ttl/jga_study-pubmed.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 20:34:30 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/jga_study-pubmed.tsv (2024-10-07 00:10:28 +0900) -latest-prerequisite time: 2024-10-07 00:10:28 +0900 -................................ - Rule for TTL (output/ttl/lipidmaps-chebi.ttl) ------------------------------ Investigating output/ttl/lipidmaps-chebi.ttl @@ -7288,121 +8210,17 @@ pre-requisites: latest-prerequisite time: 2024-09-21 04:28:56 +0900 ................................ -Rule for TTL (output/ttl/mbgd_gene-uniprot.ttl) ------------------------------- -Investigating output/ttl/mbgd_gene-uniprot.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 21:26:31 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/mbgd_gene-uniprot.tsv (2024-10-07 00:53:40 +0900) -latest-prerequisite time: 2024-10-07 00:53:40 +0900 -................................ - -Rule for TTL (output/ttl/mbgd_organism-taxonomy.ttl) ------------------------------- -Investigating output/ttl/mbgd_organism-taxonomy.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 21:26:34 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/mbgd_organism-taxonomy.tsv (2024-10-07 00:53:41 +0900) -latest-prerequisite time: 2024-10-07 00:53:41 +0900 -................................ - -Rule for TTL (output/ttl/medgen-hp_phenotype.ttl) ------------------------------- -Investigating output/ttl/medgen-hp_phenotype.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 21:26:34 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/medgen-hp_phenotype.tsv (2024-10-07 00:53:41 +0900) -latest-prerequisite time: 2024-10-07 00:53:41 +0900 -................................ - -Rule for TTL (output/ttl/medgen-mesh.ttl) ------------------------------- -Investigating output/ttl/medgen-mesh.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 21:26:35 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/medgen-mesh.tsv (2024-10-07 00:53:42 +0900) -latest-prerequisite time: 2024-10-07 00:53:42 +0900 -................................ - -Rule for TTL (output/ttl/medgen-mondo.ttl) ------------------------------- -Investigating output/ttl/medgen-mondo.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 21:26:35 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/medgen-mondo.tsv (2024-10-07 00:53:42 +0900) -latest-prerequisite time: 2024-10-07 00:53:42 +0900 -................................ - -Rule for TTL (output/ttl/medgen-ncbigene.ttl) ------------------------------- -Investigating output/ttl/medgen-ncbigene.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 21:26:35 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/medgen-ncbigene.tsv (2024-10-07 00:53:43 +0900) -latest-prerequisite time: 2024-10-07 00:53:43 +0900 -................................ - -Rule for TTL (output/ttl/medgen-omim_phenotype.ttl) ------------------------------- -Investigating output/ttl/medgen-omim_phenotype.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 21:26:36 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/medgen-omim_phenotype.tsv (2024-10-07 00:53:43 +0900) -latest-prerequisite time: 2024-10-07 00:53:43 +0900 -................................ - -Rule for TTL (output/ttl/medgen-orphanet_phenotype.ttl) ------------------------------- -Investigating output/ttl/medgen-orphanet_phenotype.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 21:26:36 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/medgen-orphanet_phenotype.tsv (2024-10-07 00:53:44 +0900) -latest-prerequisite time: 2024-10-07 00:53:44 +0900 -................................ - Rule for TTL (output/ttl/mgi_gene-ensembl_gene.ttl) ------------------------------ Investigating output/ttl/mgi_gene-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:19:26 +0900 +timestamp: 2024-10-19 02:48:55 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/mgi_gene-ensembl_gene.tsv (2024-10-11 21:01:09 +0900) -latest-prerequisite time: 2024-10-11 21:01:09 +0900 +--output/tsv/mgi_gene-ensembl_gene.tsv (2024-10-18 22:08:13 +0900) +latest-prerequisite time: 2024-10-18 22:08:13 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-hgnc.ttl) @@ -7410,12 +8228,12 @@ Rule for TTL (output/ttl/mgi_gene-hgnc.ttl) Investigating output/ttl/mgi_gene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:19:26 +0900 +timestamp: 2024-10-19 02:48:55 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/mgi_gene-hgnc.tsv (2024-10-11 21:01:10 +0900) -latest-prerequisite time: 2024-10-11 21:01:10 +0900 +--output/tsv/mgi_gene-hgnc.tsv (2024-10-18 22:08:14 +0900) +latest-prerequisite time: 2024-10-18 22:08:14 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-mgi_allele.ttl) @@ -7423,12 +8241,12 @@ Rule for TTL (output/ttl/mgi_gene-mgi_allele.ttl) Investigating output/ttl/mgi_gene-mgi_allele.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:19:27 +0900 +timestamp: 2024-10-19 02:48:56 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/mgi_gene-mgi_allele.tsv (2024-10-11 21:01:11 +0900) -latest-prerequisite time: 2024-10-11 21:01:11 +0900 +--output/tsv/mgi_gene-mgi_allele.tsv (2024-10-18 22:08:15 +0900) +latest-prerequisite time: 2024-10-18 22:08:15 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-ncbigene.ttl) @@ -7436,12 +8254,12 @@ Rule for TTL (output/ttl/mgi_gene-ncbigene.ttl) Investigating output/ttl/mgi_gene-ncbigene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:19:28 +0900 +timestamp: 2024-10-19 02:48:57 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/mgi_gene-ncbigene.tsv (2024-10-11 21:01:12 +0900) -latest-prerequisite time: 2024-10-11 21:01:12 +0900 +--output/tsv/mgi_gene-ncbigene.tsv (2024-10-18 22:08:16 +0900) +latest-prerequisite time: 2024-10-18 22:08:16 +0900 ................................ Rule for TTL (output/ttl/mgi_gene-uniprot.ttl) @@ -7449,12 +8267,12 @@ Rule for TTL (output/ttl/mgi_gene-uniprot.ttl) Investigating output/ttl/mgi_gene-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:19:29 +0900 +timestamp: 2024-10-19 02:48:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/mgi_gene-uniprot.tsv (2024-10-11 21:01:12 +0900) -latest-prerequisite time: 2024-10-11 21:01:12 +0900 +--output/tsv/mgi_gene-uniprot.tsv (2024-10-18 22:08:16 +0900) +latest-prerequisite time: 2024-10-18 22:08:16 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-doid.ttl) @@ -7462,12 +8280,12 @@ Rule for TTL (output/ttl/mgi_genotype-doid.ttl) Investigating output/ttl/mgi_genotype-doid.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:19:29 +0900 +timestamp: 2024-10-19 02:48:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/mgi_genotype-doid.tsv (2024-10-11 21:01:14 +0900) -latest-prerequisite time: 2024-10-11 21:01:14 +0900 +--output/tsv/mgi_genotype-doid.tsv (2024-10-18 22:08:19 +0900) +latest-prerequisite time: 2024-10-18 22:08:19 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-mgi_allele.ttl) @@ -7475,12 +8293,12 @@ Rule for TTL (output/ttl/mgi_genotype-mgi_allele.ttl) Investigating output/ttl/mgi_genotype-mgi_allele.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:19:30 +0900 +timestamp: 2024-10-19 02:48:59 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/mgi_genotype-mgi_allele.tsv (2024-10-11 21:01:15 +0900) -latest-prerequisite time: 2024-10-11 21:01:15 +0900 +--output/tsv/mgi_genotype-mgi_allele.tsv (2024-10-18 22:08:20 +0900) +latest-prerequisite time: 2024-10-18 22:08:20 +0900 ................................ Rule for TTL (output/ttl/mgi_genotype-mp.ttl) @@ -7488,12 +8306,12 @@ Rule for TTL (output/ttl/mgi_genotype-mp.ttl) Investigating output/ttl/mgi_genotype-mp.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:19:34 +0900 +timestamp: 2024-10-19 02:49:02 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/mgi_genotype-mp.tsv (2024-10-11 21:01:18 +0900) -latest-prerequisite time: 2024-10-11 21:01:18 +0900 +--output/tsv/mgi_genotype-mp.tsv (2024-10-18 22:08:23 +0900) +latest-prerequisite time: 2024-10-18 22:08:23 +0900 ................................ Rule for TTL (output/ttl/mondo-doid.ttl) @@ -7574,30 +8392,17 @@ pre-requisites: latest-prerequisite time: 2024-09-06 11:55:18 +0900 ................................ -Rule for TTL (output/ttl/nando-mondo.ttl) ------------------------------- -Investigating output/ttl/nando-mondo.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 21:26:45 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/nando-mondo.tsv (2024-10-07 00:53:59 +0900) -latest-prerequisite time: 2024-10-07 00:53:59 +0900 -................................ - Rule for TTL (output/ttl/ncbigene-ensembl_gene.ttl) ------------------------------ Investigating output/ttl/ncbigene-ensembl_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:21:11 +0900 +timestamp: 2024-10-19 02:50:44 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-ensembl_gene.tsv (2024-10-11 21:01:59 +0900) -latest-prerequisite time: 2024-10-11 21:01:59 +0900 +--output/tsv/ncbigene-ensembl_gene.tsv (2024-10-18 22:09:08 +0900) +latest-prerequisite time: 2024-10-18 22:09:08 +0900 ................................ Rule for TTL (output/ttl/ncbigene-ensembl_protein.ttl) @@ -7605,12 +8410,12 @@ Rule for TTL (output/ttl/ncbigene-ensembl_protein.ttl) Investigating output/ttl/ncbigene-ensembl_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:23:06 +0900 +timestamp: 2024-10-19 02:52:40 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-ensembl_protein.tsv (2024-10-11 21:03:12 +0900) -latest-prerequisite time: 2024-10-11 21:03:12 +0900 +--output/tsv/ncbigene-ensembl_protein.tsv (2024-10-18 22:10:18 +0900) +latest-prerequisite time: 2024-10-18 22:10:18 +0900 ................................ Rule for TTL (output/ttl/ncbigene-ensembl_transcript.ttl) @@ -7618,12 +8423,12 @@ Rule for TTL (output/ttl/ncbigene-ensembl_transcript.ttl) Investigating output/ttl/ncbigene-ensembl_transcript.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:25:06 +0900 +timestamp: 2024-10-19 02:54:43 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-ensembl_transcript.tsv (2024-10-11 21:04:19 +0900) -latest-prerequisite time: 2024-10-11 21:04:19 +0900 +--output/tsv/ncbigene-ensembl_transcript.tsv (2024-10-18 22:11:32 +0900) +latest-prerequisite time: 2024-10-18 22:11:32 +0900 ................................ Rule for TTL (output/ttl/ncbigene-flybase_gene.ttl) @@ -7631,12 +8436,12 @@ Rule for TTL (output/ttl/ncbigene-flybase_gene.ttl) Investigating output/ttl/ncbigene-flybase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:25:08 +0900 +timestamp: 2024-10-19 02:54:45 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-flybase_gene.tsv (2024-10-11 21:05:56 +0900) -latest-prerequisite time: 2024-10-11 21:05:56 +0900 +--output/tsv/ncbigene-flybase_gene.tsv (2024-10-18 22:13:04 +0900) +latest-prerequisite time: 2024-10-18 22:13:04 +0900 ................................ Rule for TTL (output/ttl/ncbigene-go.ttl) @@ -7644,12 +8449,12 @@ Rule for TTL (output/ttl/ncbigene-go.ttl) Investigating output/ttl/ncbigene-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:42:54 +0900 +timestamp: 2024-10-19 03:12:14 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-go.tsv (2024-10-11 21:11:40 +0900) -latest-prerequisite time: 2024-10-11 21:11:40 +0900 +--output/tsv/ncbigene-go.tsv (2024-10-18 22:19:20 +0900) +latest-prerequisite time: 2024-10-18 22:19:20 +0900 ................................ Rule for TTL (output/ttl/ncbigene-hgnc.ttl) @@ -7657,12 +8462,12 @@ Rule for TTL (output/ttl/ncbigene-hgnc.ttl) Investigating output/ttl/ncbigene-hgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:42:57 +0900 +timestamp: 2024-10-19 03:12:18 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-hgnc.tsv (2024-10-11 21:11:41 +0900) -latest-prerequisite time: 2024-10-11 21:11:41 +0900 +--output/tsv/ncbigene-hgnc.tsv (2024-10-18 22:19:21 +0900) +latest-prerequisite time: 2024-10-18 22:19:21 +0900 ................................ Rule for TTL (output/ttl/ncbigene-mgi_gene.ttl) @@ -7670,12 +8475,12 @@ Rule for TTL (output/ttl/ncbigene-mgi_gene.ttl) Investigating output/ttl/ncbigene-mgi_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:42:57 +0900 +timestamp: 2024-10-19 03:12:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-mgi_gene.tsv (2024-10-11 21:12:49 +0900) -latest-prerequisite time: 2024-10-11 21:12:49 +0900 +--output/tsv/ncbigene-mgi_gene.tsv (2024-10-18 22:20:29 +0900) +latest-prerequisite time: 2024-10-18 22:20:29 +0900 ................................ Rule for TTL (output/ttl/ncbigene-mirbase.ttl) @@ -7683,12 +8488,12 @@ Rule for TTL (output/ttl/ncbigene-mirbase.ttl) Investigating output/ttl/ncbigene-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:42:58 +0900 +timestamp: 2024-10-19 03:12:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-mirbase.tsv (2024-10-11 21:14:40 +0900) -latest-prerequisite time: 2024-10-11 21:14:40 +0900 +--output/tsv/ncbigene-mirbase.tsv (2024-10-18 22:22:22 +0900) +latest-prerequisite time: 2024-10-18 22:22:22 +0900 ................................ Rule for TTL (output/ttl/ncbigene-omim_gene.ttl) @@ -7696,12 +8501,12 @@ Rule for TTL (output/ttl/ncbigene-omim_gene.ttl) Investigating output/ttl/ncbigene-omim_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:42:58 +0900 +timestamp: 2024-10-19 03:12:19 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-omim_gene.tsv (2024-10-11 21:14:41 +0900) -latest-prerequisite time: 2024-10-11 21:14:41 +0900 +--output/tsv/ncbigene-omim_gene.tsv (2024-10-18 22:22:23 +0900) +latest-prerequisite time: 2024-10-18 22:22:23 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_genomic.ttl) @@ -7709,12 +8514,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_genomic.ttl) Investigating output/ttl/ncbigene-refseq_genomic.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:43:00 +0900 +timestamp: 2024-10-19 03:12:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-refseq_genomic.tsv (2024-10-11 21:18:57 +0900) -latest-prerequisite time: 2024-10-11 21:18:57 +0900 +--output/tsv/ncbigene-refseq_genomic.tsv (2024-10-18 22:27:11 +0900) +latest-prerequisite time: 2024-10-18 22:27:11 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_protein.ttl) @@ -7722,12 +8527,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_protein.ttl) Investigating output/ttl/ncbigene-refseq_protein.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-11 23:56:27 +0900 +timestamp: 2024-10-19 03:25:49 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-refseq_protein.tsv (2024-10-11 21:23:31 +0900) -latest-prerequisite time: 2024-10-11 21:23:31 +0900 +--output/tsv/ncbigene-refseq_protein.tsv (2024-10-18 22:32:01 +0900) +latest-prerequisite time: 2024-10-18 22:32:01 +0900 ................................ Rule for TTL (output/ttl/ncbigene-refseq_rna.ttl) @@ -7735,12 +8540,12 @@ Rule for TTL (output/ttl/ncbigene-refseq_rna.ttl) Investigating output/ttl/ncbigene-refseq_rna.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-12 00:07:29 +0900 +timestamp: 2024-10-19 03:37:58 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-refseq_rna.tsv (2024-10-11 21:27:47 +0900) -latest-prerequisite time: 2024-10-11 21:27:47 +0900 +--output/tsv/ncbigene-refseq_rna.tsv (2024-10-18 22:36:20 +0900) +latest-prerequisite time: 2024-10-18 22:36:20 +0900 ................................ Rule for TTL (output/ttl/ncbigene-rgd.ttl) @@ -7748,12 +8553,12 @@ Rule for TTL (output/ttl/ncbigene-rgd.ttl) Investigating output/ttl/ncbigene-rgd.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-12 00:07:32 +0900 +timestamp: 2024-10-19 03:38:02 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-rgd.tsv (2024-10-11 21:28:53 +0900) -latest-prerequisite time: 2024-10-11 21:28:53 +0900 +--output/tsv/ncbigene-rgd.tsv (2024-10-18 22:37:27 +0900) +latest-prerequisite time: 2024-10-18 22:37:27 +0900 ................................ Rule for TTL (output/ttl/ncbigene-sgd.ttl) @@ -7761,12 +8566,12 @@ Rule for TTL (output/ttl/ncbigene-sgd.ttl) Investigating output/ttl/ncbigene-sgd.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-12 00:07:32 +0900 +timestamp: 2024-10-19 03:38:02 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-sgd.tsv (2024-10-11 21:30:09 +0900) -latest-prerequisite time: 2024-10-11 21:30:09 +0900 +--output/tsv/ncbigene-sgd.tsv (2024-10-18 22:38:44 +0900) +latest-prerequisite time: 2024-10-18 22:38:44 +0900 ................................ Rule for TTL (output/ttl/ncbigene-tair.ttl) @@ -7774,12 +8579,12 @@ Rule for TTL (output/ttl/ncbigene-tair.ttl) Investigating output/ttl/ncbigene-tair.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-12 00:07:33 +0900 +timestamp: 2024-10-19 03:38:03 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-tair.tsv (2024-10-11 21:31:25 +0900) -latest-prerequisite time: 2024-10-11 21:31:25 +0900 +--output/tsv/ncbigene-tair.tsv (2024-10-18 22:40:02 +0900) +latest-prerequisite time: 2024-10-18 22:40:02 +0900 ................................ Rule for TTL (output/ttl/ncbigene-taxonomy.ttl) @@ -7787,12 +8592,12 @@ Rule for TTL (output/ttl/ncbigene-taxonomy.ttl) Investigating output/ttl/ncbigene-taxonomy.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-12 00:16:05 +0900 +timestamp: 2024-10-19 03:46:37 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-taxonomy.tsv (2024-10-11 21:32:17 +0900) -latest-prerequisite time: 2024-10-11 21:32:17 +0900 +--output/tsv/ncbigene-taxonomy.tsv (2024-10-18 22:40:50 +0900) +latest-prerequisite time: 2024-10-18 22:40:50 +0900 ................................ Rule for TTL (output/ttl/ncbigene-vgnc.ttl) @@ -7800,12 +8605,12 @@ Rule for TTL (output/ttl/ncbigene-vgnc.ttl) Investigating output/ttl/ncbigene-vgnc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-12 00:16:07 +0900 +timestamp: 2024-10-19 03:46:40 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-vgnc.tsv (2024-10-11 21:33:33 +0900) -latest-prerequisite time: 2024-10-11 21:33:33 +0900 +--output/tsv/ncbigene-vgnc.tsv (2024-10-18 22:42:11 +0900) +latest-prerequisite time: 2024-10-18 22:42:11 +0900 ................................ Rule for TTL (output/ttl/ncbigene-wormbase_gene.ttl) @@ -7813,12 +8618,12 @@ Rule for TTL (output/ttl/ncbigene-wormbase_gene.ttl) Investigating output/ttl/ncbigene-wormbase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-12 00:16:08 +0900 +timestamp: 2024-10-19 03:46:41 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-wormbase_gene.tsv (2024-10-11 21:34:50 +0900) -latest-prerequisite time: 2024-10-11 21:34:50 +0900 +--output/tsv/ncbigene-wormbase_gene.tsv (2024-10-18 22:43:28 +0900) +latest-prerequisite time: 2024-10-18 22:43:28 +0900 ................................ Rule for TTL (output/ttl/ncbigene-xenbase_gene.ttl) @@ -7826,12 +8631,12 @@ Rule for TTL (output/ttl/ncbigene-xenbase_gene.ttl) Investigating output/ttl/ncbigene-xenbase_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-12 00:16:08 +0900 +timestamp: 2024-10-19 03:46:42 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-xenbase_gene.tsv (2024-10-11 21:36:07 +0900) -latest-prerequisite time: 2024-10-11 21:36:07 +0900 +--output/tsv/ncbigene-xenbase_gene.tsv (2024-10-18 22:44:45 +0900) +latest-prerequisite time: 2024-10-18 22:44:45 +0900 ................................ Rule for TTL (output/ttl/ncbigene-zfin_gene.ttl) @@ -7839,25 +8644,12 @@ Rule for TTL (output/ttl/ncbigene-zfin_gene.ttl) Investigating output/ttl/ncbigene-zfin_gene.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-12 00:16:09 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncbigene-zfin_gene.tsv (2024-10-11 21:37:24 +0900) -latest-prerequisite time: 2024-10-11 21:37:24 +0900 -................................ - -Rule for TTL (output/ttl/ncit_disease-ncit_tissue.ttl) ------------------------------- -Investigating output/ttl/ncit_disease-ncit_tissue.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 22:23:55 +0900 +timestamp: 2024-10-19 03:46:42 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/ncit_disease-ncit_tissue.tsv (2024-10-07 01:31:45 +0900) -latest-prerequisite time: 2024-10-07 01:31:45 +0900 +--output/tsv/ncbigene-zfin_gene.tsv (2024-10-18 22:46:02 +0900) +latest-prerequisite time: 2024-10-18 22:46:02 +0900 ................................ Rule for TTL (output/ttl/oma_protein-ensembl_gene.ttl) @@ -7912,511 +8704,186 @@ pre-requisites: latest-prerequisite time: 2024-09-27 22:39:39 +0900 ................................ -Rule for TTL (output/ttl/orphanet_gene-ensembl_gene.ttl) +Rule for TTL (output/ttl/pmc-pubmed.ttl) ------------------------------ -Investigating output/ttl/orphanet_gene-ensembl_gene.ttl +Investigating output/ttl/pmc-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 22:23:55 +0900 +timestamp: 2024-10-19 03:48:25 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/orphanet_gene-ensembl_gene.tsv (2024-10-07 01:31:46 +0900) -latest-prerequisite time: 2024-10-07 01:31:46 +0900 +--output/tsv/pmc-pubmed.tsv (2024-10-18 22:51:57 +0900) +latest-prerequisite time: 2024-10-18 22:51:57 +0900 ................................ -Rule for TTL (output/ttl/orphanet_gene-hgnc.ttl) +Rule for TTL (output/ttl/prosite-prosite_prorule.ttl) ------------------------------ -Investigating output/ttl/orphanet_gene-hgnc.ttl +Investigating output/ttl/prosite-prosite_prorule.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 22:23:55 +0900 +timestamp: 2024-10-07 22:25:33 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/orphanet_gene-hgnc.tsv (2024-10-07 01:31:46 +0900) -latest-prerequisite time: 2024-10-07 01:31:46 +0900 +--output/tsv/prosite-prosite_prorule.tsv (2024-10-07 01:37:39 +0900) +latest-prerequisite time: 2024-10-07 01:37:39 +0900 ................................ -Rule for TTL (output/ttl/orphanet_gene-omim_gene.ttl) +Rule for TTL (output/ttl/reactome_pathway-chebi.ttl) ------------------------------ -Investigating output/ttl/orphanet_gene-omim_gene.ttl +Investigating output/ttl/reactome_pathway-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 22:23:56 +0900 +timestamp: 2024-10-19 04:32:26 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/orphanet_gene-omim_gene.tsv (2024-10-07 01:31:47 +0900) -latest-prerequisite time: 2024-10-07 01:31:47 +0900 +--output/tsv/reactome_pathway-chebi.tsv (2024-10-18 23:01:03 +0900) +latest-prerequisite time: 2024-10-18 23:01:03 +0900 ................................ -Rule for TTL (output/ttl/orphanet_gene-uniprot.ttl) +Rule for TTL (output/ttl/reactome_pathway-go.ttl) ------------------------------ -Investigating output/ttl/orphanet_gene-uniprot.ttl +Investigating output/ttl/reactome_pathway-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 22:23:56 +0900 +timestamp: 2024-10-19 04:32:27 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/orphanet_gene-uniprot.tsv (2024-10-07 01:31:47 +0900) -latest-prerequisite time: 2024-10-07 01:31:47 +0900 +--output/tsv/reactome_pathway-go.tsv (2024-10-18 23:01:03 +0900) +latest-prerequisite time: 2024-10-18 23:01:03 +0900 ................................ -Rule for TTL (output/ttl/orphanet_phenotype-meddra.ttl) +Rule for TTL (output/ttl/reactome_pathway-iuphar_ligand.ttl) ------------------------------ -Investigating output/ttl/orphanet_phenotype-meddra.ttl +Investigating output/ttl/reactome_pathway-iuphar_ligand.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 22:23:56 +0900 +timestamp: 2024-10-19 04:32:27 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/orphanet_phenotype-meddra.tsv (2024-10-07 01:31:48 +0900) -latest-prerequisite time: 2024-10-07 01:31:48 +0900 +--output/tsv/reactome_pathway-iuphar_ligand.tsv (2024-10-18 23:01:04 +0900) +latest-prerequisite time: 2024-10-18 23:01:04 +0900 ................................ -Rule for TTL (output/ttl/orphanet_phenotype-mesh.ttl) +Rule for TTL (output/ttl/reactome_pathway-mirbase.ttl) ------------------------------ -Investigating output/ttl/orphanet_phenotype-mesh.ttl +Investigating output/ttl/reactome_pathway-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 22:23:56 +0900 +timestamp: 2024-10-19 04:32:27 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/orphanet_phenotype-mesh.tsv (2024-10-07 01:31:48 +0900) -latest-prerequisite time: 2024-10-07 01:31:48 +0900 +--output/tsv/reactome_pathway-mirbase.tsv (2024-10-18 23:01:04 +0900) +latest-prerequisite time: 2024-10-18 23:01:04 +0900 ................................ -Rule for TTL (output/ttl/orphanet_phenotype-omim_phenotype.ttl) +Rule for TTL (output/ttl/reactome_pathway-reactome_reaction.ttl) ------------------------------ -Investigating output/ttl/orphanet_phenotype-omim_phenotype.ttl +Investigating output/ttl/reactome_pathway-reactome_reaction.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 22:23:57 +0900 +timestamp: 2024-10-19 04:32:31 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/orphanet_phenotype-omim_phenotype.tsv (2024-10-07 01:31:49 +0900) -latest-prerequisite time: 2024-10-07 01:31:49 +0900 +--output/tsv/reactome_pathway-reactome_reaction.tsv (2024-10-18 23:01:05 +0900) +latest-prerequisite time: 2024-10-18 23:01:05 +0900 ................................ -Rule for TTL (output/ttl/orphanet_phenotype-orphanet_gene.ttl) +Rule for TTL (output/ttl/reactome_pathway-uniprot.ttl) ------------------------------ -Investigating output/ttl/orphanet_phenotype-orphanet_gene.ttl +Investigating output/ttl/reactome_pathway-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 22:23:57 +0900 +timestamp: 2024-10-19 04:32:38 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/orphanet_phenotype-orphanet_gene.tsv (2024-10-07 01:31:49 +0900) -latest-prerequisite time: 2024-10-07 01:31:49 +0900 +--output/tsv/reactome_pathway-uniprot.tsv (2024-10-18 23:01:06 +0900) +latest-prerequisite time: 2024-10-18 23:01:06 +0900 ................................ -Rule for TTL (output/ttl/pdb-go.ttl) +Rule for TTL (output/ttl/reactome_reaction-chebi.ttl) ------------------------------ -Investigating output/ttl/pdb-go.ttl +Investigating output/ttl/reactome_reaction-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 22:24:08 +0900 +timestamp: 2024-10-19 04:32:40 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pdb-go.tsv (2024-10-07 01:31:53 +0900) -latest-prerequisite time: 2024-10-07 01:31:53 +0900 +--output/tsv/reactome_reaction-chebi.tsv (2024-10-18 23:01:07 +0900) +latest-prerequisite time: 2024-10-18 23:01:07 +0900 ................................ -Rule for TTL (output/ttl/pdb-interpro.ttl) +Rule for TTL (output/ttl/reactome_reaction-go.ttl) ------------------------------ -Investigating output/ttl/pdb-interpro.ttl +Investigating output/ttl/reactome_reaction-go.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 22:24:14 +0900 +timestamp: 2024-10-19 04:32:40 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pdb-interpro.tsv (2024-10-07 01:31:55 +0900) -latest-prerequisite time: 2024-10-07 01:31:55 +0900 +--output/tsv/reactome_reaction-go.tsv (2024-10-18 23:01:07 +0900) +latest-prerequisite time: 2024-10-18 23:01:07 +0900 ................................ -Rule for TTL (output/ttl/pdb-pdb_ccd.ttl) +Rule for TTL (output/ttl/reactome_reaction-iuphar_ligand.ttl) ------------------------------ -Investigating output/ttl/pdb-pdb_ccd.ttl +Investigating output/ttl/reactome_reaction-iuphar_ligand.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 22:24:18 +0900 +timestamp: 2024-10-19 04:32:41 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pdb-pdb_ccd.tsv (2024-10-07 01:31:56 +0900) -latest-prerequisite time: 2024-10-07 01:31:56 +0900 +--output/tsv/reactome_reaction-iuphar_ligand.tsv (2024-10-18 23:01:07 +0900) +latest-prerequisite time: 2024-10-18 23:01:07 +0900 ................................ -Rule for TTL (output/ttl/pdb-pfam.ttl) +Rule for TTL (output/ttl/reactome_reaction-mirbase.ttl) ------------------------------ -Investigating output/ttl/pdb-pfam.ttl +Investigating output/ttl/reactome_reaction-mirbase.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 22:24:21 +0900 +timestamp: 2024-10-19 04:32:41 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pdb-pfam.tsv (2024-10-07 01:31:57 +0900) -latest-prerequisite time: 2024-10-07 01:31:57 +0900 +--output/tsv/reactome_reaction-mirbase.tsv (2024-10-18 23:01:08 +0900) +latest-prerequisite time: 2024-10-18 23:01:08 +0900 ................................ -Rule for TTL (output/ttl/pdb-uniprot.ttl) +Rule for TTL (output/ttl/reactome_reaction-uniprot.ttl) ------------------------------ -Investigating output/ttl/pdb-uniprot.ttl +Investigating output/ttl/reactome_reaction-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-07 22:24:24 +0900 +timestamp: 2024-10-19 04:32:47 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pdb-uniprot.tsv (2024-10-07 01:31:58 +0900) -latest-prerequisite time: 2024-10-07 01:31:58 +0900 +--output/tsv/reactome_reaction-uniprot.tsv (2024-10-18 23:01:09 +0900) +latest-prerequisite time: 2024-10-18 23:01:09 +0900 ................................ -Rule for TTL (output/ttl/pmc-pubmed.ttl) +Rule for TTL (output/ttl/refseq_protein-uniprot.ttl) ------------------------------ -Investigating output/ttl/pmc-pubmed.ttl +Investigating output/ttl/refseq_protein-uniprot.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-12 00:17:17 +0900 +timestamp: 2024-10-19 05:23:39 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pmc-pubmed.tsv (2024-10-11 21:43:06 +0900) -latest-prerequisite time: 2024-10-11 21:43:06 +0900 -................................ - -Rule for TTL (output/ttl/prosite-prosite_prorule.ttl) ------------------------------- -Investigating output/ttl/prosite-prosite_prorule.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 22:25:33 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/prosite-prosite_prorule.tsv (2024-10-07 01:37:39 +0900) -latest-prerequisite time: 2024-10-07 01:37:39 +0900 -................................ - -Rule for TTL (output/ttl/pubchem_compound-atc.ttl) ------------------------------- -Investigating output/ttl/pubchem_compound-atc.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 22:25:33 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pubchem_compound-atc.tsv (2024-10-07 01:37:39 +0900) -latest-prerequisite time: 2024-10-07 01:37:39 +0900 -................................ - -Rule for TTL (output/ttl/pubchem_compound-chebi.ttl) ------------------------------- -Investigating output/ttl/pubchem_compound-chebi.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 22:25:35 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pubchem_compound-chebi.tsv (2024-10-07 01:37:40 +0900) -latest-prerequisite time: 2024-10-07 01:37:40 +0900 -................................ - -Rule for TTL (output/ttl/pubchem_compound-chembl_compound.ttl) ------------------------------- -Investigating output/ttl/pubchem_compound-chembl_compound.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 22:25:55 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pubchem_compound-chembl_compound.tsv (2024-10-07 01:37:45 +0900) -latest-prerequisite time: 2024-10-07 01:37:45 +0900 -................................ - -Rule for TTL (output/ttl/pubchem_compound-drugbank.ttl) ------------------------------- -Investigating output/ttl/pubchem_compound-drugbank.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 22:25:56 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pubchem_compound-drugbank.tsv (2024-10-07 01:37:46 +0900) -latest-prerequisite time: 2024-10-07 01:37:46 +0900 -................................ - -Rule for TTL (output/ttl/pubchem_compound-glytoucan.ttl) ------------------------------- -Investigating output/ttl/pubchem_compound-glytoucan.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 22:25:56 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pubchem_compound-glytoucan.tsv (2024-10-07 01:37:46 +0900) -latest-prerequisite time: 2024-10-07 01:37:46 +0900 -................................ - -Rule for TTL (output/ttl/pubchem_compound-inchi_key.ttl) ------------------------------- -Investigating output/ttl/pubchem_compound-inchi_key.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:20 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pubchem_compound-inchi_key.tsv (2024-10-07 01:47:00 +0900) -latest-prerequisite time: 2024-10-07 01:47:00 +0900 -................................ - -Rule for TTL (output/ttl/pubchem_pathway-ncbigene.ttl) ------------------------------- -Investigating output/ttl/pubchem_pathway-ncbigene.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:23 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pubchem_pathway-ncbigene.tsv (2024-10-07 01:47:01 +0900) -latest-prerequisite time: 2024-10-07 01:47:01 +0900 -................................ - -Rule for TTL (output/ttl/pubchem_pathway-pathbank.ttl) ------------------------------- -Investigating output/ttl/pubchem_pathway-pathbank.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:24 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pubchem_pathway-pathbank.tsv (2024-10-07 01:47:01 +0900) -latest-prerequisite time: 2024-10-07 01:47:01 +0900 -................................ - -Rule for TTL (output/ttl/pubchem_pathway-pubchem_compound.ttl) ------------------------------- -Investigating output/ttl/pubchem_pathway-pubchem_compound.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:33 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pubchem_pathway-pubchem_compound.tsv (2024-10-07 01:47:04 +0900) -latest-prerequisite time: 2024-10-07 01:47:04 +0900 -................................ - -Rule for TTL (output/ttl/pubchem_pathway-reactome_pathway.ttl) ------------------------------- -Investigating output/ttl/pubchem_pathway-reactome_pathway.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:34 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pubchem_pathway-reactome_pathway.tsv (2024-10-07 01:47:04 +0900) -latest-prerequisite time: 2024-10-07 01:47:04 +0900 -................................ - -Rule for TTL (output/ttl/pubchem_pathway-uniprot.ttl) ------------------------------- -Investigating output/ttl/pubchem_pathway-uniprot.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:38 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pubchem_pathway-uniprot.tsv (2024-10-07 01:47:06 +0900) -latest-prerequisite time: 2024-10-07 01:47:06 +0900 -................................ - -Rule for TTL (output/ttl/pubchem_pathway-wikipathways.ttl) ------------------------------- -Investigating output/ttl/pubchem_pathway-wikipathways.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:39 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/pubchem_pathway-wikipathways.tsv (2024-10-07 01:47:06 +0900) -latest-prerequisite time: 2024-10-07 01:47:06 +0900 -................................ - -Rule for TTL (output/ttl/reactome_pathway-chebi.ttl) ------------------------------- -Investigating output/ttl/reactome_pathway-chebi.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:41 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/reactome_pathway-chebi.tsv (2024-10-07 01:47:07 +0900) -latest-prerequisite time: 2024-10-07 01:47:07 +0900 -................................ - -Rule for TTL (output/ttl/reactome_pathway-go.ttl) ------------------------------- -Investigating output/ttl/reactome_pathway-go.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:42 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/reactome_pathway-go.tsv (2024-10-07 01:47:07 +0900) -latest-prerequisite time: 2024-10-07 01:47:07 +0900 -................................ - -Rule for TTL (output/ttl/reactome_pathway-iuphar_ligand.ttl) ------------------------------- -Investigating output/ttl/reactome_pathway-iuphar_ligand.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:42 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/reactome_pathway-iuphar_ligand.tsv (2024-10-07 01:47:08 +0900) -latest-prerequisite time: 2024-10-07 01:47:08 +0900 -................................ - -Rule for TTL (output/ttl/reactome_pathway-mirbase.ttl) ------------------------------- -Investigating output/ttl/reactome_pathway-mirbase.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:42 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/reactome_pathway-mirbase.tsv (2024-10-07 01:47:08 +0900) -latest-prerequisite time: 2024-10-07 01:47:08 +0900 -................................ - -Rule for TTL (output/ttl/reactome_pathway-reactome_reaction.ttl) ------------------------------- -Investigating output/ttl/reactome_pathway-reactome_reaction.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:46 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/reactome_pathway-reactome_reaction.tsv (2024-10-07 01:47:09 +0900) -latest-prerequisite time: 2024-10-07 01:47:09 +0900 -................................ - -Rule for TTL (output/ttl/reactome_pathway-uniprot.ttl) ------------------------------- -Investigating output/ttl/reactome_pathway-uniprot.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:53 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/reactome_pathway-uniprot.tsv (2024-10-07 01:47:12 +0900) -latest-prerequisite time: 2024-10-07 01:47:12 +0900 -................................ - -Rule for TTL (output/ttl/reactome_reaction-chebi.ttl) ------------------------------- -Investigating output/ttl/reactome_reaction-chebi.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:55 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/reactome_reaction-chebi.tsv (2024-10-07 01:47:13 +0900) -latest-prerequisite time: 2024-10-07 01:47:13 +0900 -................................ - -Rule for TTL (output/ttl/reactome_reaction-go.ttl) ------------------------------- -Investigating output/ttl/reactome_reaction-go.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:55 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/reactome_reaction-go.tsv (2024-10-07 01:47:13 +0900) -latest-prerequisite time: 2024-10-07 01:47:13 +0900 -................................ - -Rule for TTL (output/ttl/reactome_reaction-iuphar_ligand.ttl) ------------------------------- -Investigating output/ttl/reactome_reaction-iuphar_ligand.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:56 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/reactome_reaction-iuphar_ligand.tsv (2024-10-07 01:47:13 +0900) -latest-prerequisite time: 2024-10-07 01:47:13 +0900 -................................ - -Rule for TTL (output/ttl/reactome_reaction-mirbase.ttl) ------------------------------- -Investigating output/ttl/reactome_reaction-mirbase.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:07:56 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/reactome_reaction-mirbase.tsv (2024-10-07 01:47:14 +0900) -latest-prerequisite time: 2024-10-07 01:47:14 +0900 -................................ - -Rule for TTL (output/ttl/reactome_reaction-uniprot.ttl) ------------------------------- -Investigating output/ttl/reactome_reaction-uniprot.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-07 23:08:02 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/reactome_reaction-uniprot.tsv (2024-10-07 01:47:15 +0900) -latest-prerequisite time: 2024-10-07 01:47:15 +0900 -................................ - -Rule for TTL (output/ttl/refseq_protein-uniprot.ttl) ------------------------------- -Investigating output/ttl/refseq_protein-uniprot.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-12 01:06:13 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/refseq_protein-uniprot.tsv (2024-10-11 21:49:27 +0900) -latest-prerequisite time: 2024-10-11 21:49:27 +0900 +--output/tsv/refseq_protein-uniprot.tsv (2024-10-18 23:07:25 +0900) +latest-prerequisite time: 2024-10-18 23:07:25 +0900 ................................ Rule for TTL (output/ttl/refseq_rna-dbsnp.ttl) @@ -8593,12 +9060,12 @@ Rule for TTL (output/ttl/sra_accession-bioproject.ttl) Investigating output/ttl/sra_accession-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:10:07 +0900 +timestamp: 2024-10-19 05:23:47 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_accession-bioproject.tsv (2024-10-07 01:58:24 +0900) -latest-prerequisite time: 2024-10-07 01:58:24 +0900 +--output/tsv/sra_accession-bioproject.tsv (2024-10-18 23:09:14 +0900) +latest-prerequisite time: 2024-10-18 23:09:14 +0900 ................................ Rule for TTL (output/ttl/sra_accession-biosample.ttl) @@ -8606,12 +9073,12 @@ Rule for TTL (output/ttl/sra_accession-biosample.ttl) Investigating output/ttl/sra_accession-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:15:25 +0900 +timestamp: 2024-10-19 05:29:27 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_accession-biosample.tsv (2024-10-07 02:06:38 +0900) -latest-prerequisite time: 2024-10-07 02:06:38 +0900 +--output/tsv/sra_accession-biosample.tsv (2024-10-18 23:17:25 +0900) +latest-prerequisite time: 2024-10-18 23:17:25 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_analysis.ttl) @@ -8619,12 +9086,12 @@ Rule for TTL (output/ttl/sra_accession-sra_analysis.ttl) Investigating output/ttl/sra_accession-sra_analysis.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:15:29 +0900 +timestamp: 2024-10-19 05:29:31 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_accession-sra_analysis.tsv (2024-10-07 02:07:46 +0900) -latest-prerequisite time: 2024-10-07 02:07:46 +0900 +--output/tsv/sra_accession-sra_analysis.tsv (2024-10-18 23:18:33 +0900) +latest-prerequisite time: 2024-10-18 23:18:33 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_experiment.ttl) @@ -8632,12 +9099,12 @@ Rule for TTL (output/ttl/sra_accession-sra_experiment.ttl) Investigating output/ttl/sra_accession-sra_experiment.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:21:36 +0900 +timestamp: 2024-10-19 05:35:53 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_accession-sra_experiment.tsv (2024-10-07 02:14:31 +0900) -latest-prerequisite time: 2024-10-07 02:14:31 +0900 +--output/tsv/sra_accession-sra_experiment.tsv (2024-10-18 23:25:33 +0900) +latest-prerequisite time: 2024-10-18 23:25:33 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_project.ttl) @@ -8645,12 +9112,12 @@ Rule for TTL (output/ttl/sra_accession-sra_project.ttl) Investigating output/ttl/sra_accession-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:21:43 +0900 +timestamp: 2024-10-19 05:35:59 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_accession-sra_project.tsv (2024-10-07 02:15:37 +0900) -latest-prerequisite time: 2024-10-07 02:15:37 +0900 +--output/tsv/sra_accession-sra_project.tsv (2024-10-18 23:26:40 +0900) +latest-prerequisite time: 2024-10-18 23:26:40 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_run.ttl) @@ -8658,12 +9125,12 @@ Rule for TTL (output/ttl/sra_accession-sra_run.ttl) Investigating output/ttl/sra_accession-sra_run.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:28:07 +0900 +timestamp: 2024-10-19 05:42:42 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_accession-sra_run.tsv (2024-10-07 02:23:08 +0900) -latest-prerequisite time: 2024-10-07 02:23:08 +0900 +--output/tsv/sra_accession-sra_run.tsv (2024-10-18 23:34:28 +0900) +latest-prerequisite time: 2024-10-18 23:34:28 +0900 ................................ Rule for TTL (output/ttl/sra_accession-sra_sample.ttl) @@ -8671,12 +9138,12 @@ Rule for TTL (output/ttl/sra_accession-sra_sample.ttl) Investigating output/ttl/sra_accession-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:33:00 +0900 +timestamp: 2024-10-19 05:47:44 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_accession-sra_sample.tsv (2024-10-07 02:29:36 +0900) -latest-prerequisite time: 2024-10-07 02:29:36 +0900 +--output/tsv/sra_accession-sra_sample.tsv (2024-10-18 23:41:07 +0900) +latest-prerequisite time: 2024-10-18 23:41:07 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-bioproject.ttl) @@ -8684,12 +9151,12 @@ Rule for TTL (output/ttl/sra_experiment-bioproject.ttl) Investigating output/ttl/sra_experiment-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:38:16 +0900 +timestamp: 2024-10-19 05:53:17 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_experiment-bioproject.tsv (2024-10-07 02:33:11 +0900) -latest-prerequisite time: 2024-10-07 02:33:11 +0900 +--output/tsv/sra_experiment-bioproject.tsv (2024-10-18 23:44:42 +0900) +latest-prerequisite time: 2024-10-18 23:44:42 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-biosample.ttl) @@ -8697,12 +9164,12 @@ Rule for TTL (output/ttl/sra_experiment-biosample.ttl) Investigating output/ttl/sra_experiment-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:43:02 +0900 +timestamp: 2024-10-19 05:58:10 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_experiment-biosample.tsv (2024-10-07 02:36:40 +0900) -latest-prerequisite time: 2024-10-07 02:36:40 +0900 +--output/tsv/sra_experiment-biosample.tsv (2024-10-18 23:48:11 +0900) +latest-prerequisite time: 2024-10-18 23:48:11 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-sra_project.ttl) @@ -8710,12 +9177,12 @@ Rule for TTL (output/ttl/sra_experiment-sra_project.ttl) Investigating output/ttl/sra_experiment-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:48:22 +0900 +timestamp: 2024-10-19 06:03:50 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_experiment-sra_project.tsv (2024-10-07 02:39:38 +0900) -latest-prerequisite time: 2024-10-07 02:39:38 +0900 +--output/tsv/sra_experiment-sra_project.tsv (2024-10-18 23:51:12 +0900) +latest-prerequisite time: 2024-10-18 23:51:12 +0900 ................................ Rule for TTL (output/ttl/sra_experiment-sra_sample.ttl) @@ -8723,12 +9190,12 @@ Rule for TTL (output/ttl/sra_experiment-sra_sample.ttl) Investigating output/ttl/sra_experiment-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:53:46 +0900 +timestamp: 2024-10-19 06:09:42 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_experiment-sra_sample.tsv (2024-10-07 02:42:34 +0900) -latest-prerequisite time: 2024-10-07 02:42:34 +0900 +--output/tsv/sra_experiment-sra_sample.tsv (2024-10-18 23:54:07 +0900) +latest-prerequisite time: 2024-10-18 23:54:07 +0900 ................................ Rule for TTL (output/ttl/sra_project-bioproject.ttl) @@ -8736,12 +9203,12 @@ Rule for TTL (output/ttl/sra_project-bioproject.ttl) Investigating output/ttl/sra_project-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:53:51 +0900 +timestamp: 2024-10-19 06:09:49 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_project-bioproject.tsv (2024-10-07 02:43:42 +0900) -latest-prerequisite time: 2024-10-07 02:43:42 +0900 +--output/tsv/sra_project-bioproject.tsv (2024-10-18 23:55:17 +0900) +latest-prerequisite time: 2024-10-18 23:55:17 +0900 ................................ Rule for TTL (output/ttl/sra_run-bioproject.ttl) @@ -8749,12 +9216,12 @@ Rule for TTL (output/ttl/sra_run-bioproject.ttl) Investigating output/ttl/sra_run-bioproject.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 00:59:01 +0900 +timestamp: 2024-10-19 06:15:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_run-bioproject.tsv (2024-10-07 02:47:44 +0900) -latest-prerequisite time: 2024-10-07 02:47:44 +0900 +--output/tsv/sra_run-bioproject.tsv (2024-10-18 23:59:19 +0900) +latest-prerequisite time: 2024-10-18 23:59:19 +0900 ................................ Rule for TTL (output/ttl/sra_run-biosample.ttl) @@ -8762,12 +9229,12 @@ Rule for TTL (output/ttl/sra_run-biosample.ttl) Investigating output/ttl/sra_run-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 01:03:56 +0900 +timestamp: 2024-10-19 06:20:26 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_run-biosample.tsv (2024-10-07 02:51:38 +0900) -latest-prerequisite time: 2024-10-07 02:51:38 +0900 +--output/tsv/sra_run-biosample.tsv (2024-10-19 00:03:14 +0900) +latest-prerequisite time: 2024-10-19 00:03:14 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_experiment.ttl) @@ -8775,12 +9242,12 @@ Rule for TTL (output/ttl/sra_run-sra_experiment.ttl) Investigating output/ttl/sra_run-sra_experiment.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 01:09:42 +0900 +timestamp: 2024-10-19 06:26:31 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_run-sra_experiment.tsv (2024-10-07 02:54:40 +0900) -latest-prerequisite time: 2024-10-07 02:54:40 +0900 +--output/tsv/sra_run-sra_experiment.tsv (2024-10-19 00:06:19 +0900) +latest-prerequisite time: 2024-10-19 00:06:19 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_project.ttl) @@ -8788,12 +9255,12 @@ Rule for TTL (output/ttl/sra_run-sra_project.ttl) Investigating output/ttl/sra_run-sra_project.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 01:14:25 +0900 +timestamp: 2024-10-19 06:31:30 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_run-sra_project.tsv (2024-10-07 02:57:56 +0900) -latest-prerequisite time: 2024-10-07 02:57:56 +0900 +--output/tsv/sra_run-sra_project.tsv (2024-10-19 00:09:36 +0900) +latest-prerequisite time: 2024-10-19 00:09:36 +0900 ................................ Rule for TTL (output/ttl/sra_run-sra_sample.ttl) @@ -8801,12 +9268,12 @@ Rule for TTL (output/ttl/sra_run-sra_sample.ttl) Investigating output/ttl/sra_run-sra_sample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 01:19:32 +0900 +timestamp: 2024-10-19 06:37:21 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_run-sra_sample.tsv (2024-10-07 03:01:06 +0900) -latest-prerequisite time: 2024-10-07 03:01:06 +0900 +--output/tsv/sra_run-sra_sample.tsv (2024-10-19 00:12:46 +0900) +latest-prerequisite time: 2024-10-19 00:12:46 +0900 ................................ Rule for TTL (output/ttl/sra_sample-biosample.ttl) @@ -8814,12 +9281,12 @@ Rule for TTL (output/ttl/sra_sample-biosample.ttl) Investigating output/ttl/sra_sample-biosample.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 01:24:18 +0900 +timestamp: 2024-10-19 06:42:34 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/sra_sample-biosample.tsv (2024-10-07 03:04:12 +0900) -latest-prerequisite time: 2024-10-07 03:04:12 +0900 +--output/tsv/sra_sample-biosample.tsv (2024-10-19 00:15:54 +0900) +latest-prerequisite time: 2024-10-19 00:15:54 +0900 ................................ Rule for TTL (output/ttl/swisslipids-chebi.ttl) @@ -8827,12 +9294,12 @@ Rule for TTL (output/ttl/swisslipids-chebi.ttl) Investigating output/ttl/swisslipids-chebi.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-12 01:06:17 +0900 +timestamp: 2024-10-19 06:42:36 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/swisslipids-chebi.tsv (2024-10-11 21:49:42 +0900) -latest-prerequisite time: 2024-10-11 21:49:42 +0900 +--output/tsv/swisslipids-chebi.tsv (2024-10-19 00:16:08 +0900) +latest-prerequisite time: 2024-10-19 00:16:08 +0900 ................................ Rule for TTL (output/ttl/swisslipids-hmdb.ttl) @@ -8840,12 +9307,12 @@ Rule for TTL (output/ttl/swisslipids-hmdb.ttl) Investigating output/ttl/swisslipids-hmdb.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-12 01:06:18 +0900 +timestamp: 2024-10-19 06:42:36 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/swisslipids-hmdb.tsv (2024-10-11 21:49:56 +0900) -latest-prerequisite time: 2024-10-11 21:49:56 +0900 +--output/tsv/swisslipids-hmdb.tsv (2024-10-19 00:16:22 +0900) +latest-prerequisite time: 2024-10-19 00:16:22 +0900 ................................ Rule for TTL (output/ttl/swisslipids-inchi_key.ttl) @@ -8853,12 +9320,12 @@ Rule for TTL (output/ttl/swisslipids-inchi_key.ttl) Investigating output/ttl/swisslipids-inchi_key.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-12 01:06:23 +0900 +timestamp: 2024-10-19 06:42:42 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/swisslipids-inchi_key.tsv (2024-10-11 21:50:08 +0900) -latest-prerequisite time: 2024-10-11 21:50:08 +0900 +--output/tsv/swisslipids-inchi_key.tsv (2024-10-19 00:16:34 +0900) +latest-prerequisite time: 2024-10-19 00:16:34 +0900 ................................ Rule for TTL (output/ttl/taxonomy-pubmed.ttl) @@ -8866,129 +9333,12 @@ Rule for TTL (output/ttl/taxonomy-pubmed.ttl) Investigating output/ttl/taxonomy-pubmed.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-12 01:06:24 +0900 +timestamp: 2024-10-19 06:42:43 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/taxonomy-pubmed.tsv (2024-10-11 21:50:09 +0900) -latest-prerequisite time: 2024-10-11 21:50:09 +0900 -................................ - -Rule for TTL (output/ttl/togovar-clinvar.ttl) ------------------------------- -Investigating output/ttl/togovar-clinvar.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 01:24:32 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/togovar-clinvar.tsv (2024-10-07 03:05:48 +0900) -latest-prerequisite time: 2024-10-07 03:05:48 +0900 -................................ - -Rule for TTL (output/ttl/togovar-dbsnp.ttl) ------------------------------- -Investigating output/ttl/togovar-dbsnp.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 01:36:25 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/togovar-dbsnp.tsv (2024-10-07 03:06:25 +0900) -latest-prerequisite time: 2024-10-07 03:06:25 +0900 -................................ - -Rule for TTL (output/ttl/togovar-ensembl_gene.ttl) ------------------------------- -Investigating output/ttl/togovar-ensembl_gene.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 01:53:30 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/togovar-ensembl_gene.tsv (2024-10-07 03:07:01 +0900) -latest-prerequisite time: 2024-10-07 03:07:01 +0900 -................................ - -Rule for TTL (output/ttl/togovar-ensembl_transcript.ttl) ------------------------------- -Investigating output/ttl/togovar-ensembl_transcript.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 04:28:55 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/togovar-ensembl_transcript.tsv (2024-10-07 03:09:26 +0900) -latest-prerequisite time: 2024-10-07 03:09:26 +0900 -................................ - -Rule for TTL (output/ttl/togovar-hgnc.ttl) ------------------------------- -Investigating output/ttl/togovar-hgnc.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 04:38:29 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/togovar-hgnc.tsv (2024-10-07 03:09:49 +0900) -latest-prerequisite time: 2024-10-07 03:09:49 +0900 -................................ - -Rule for TTL (output/ttl/togovar-ncbigene.ttl) ------------------------------- -Investigating output/ttl/togovar-ncbigene.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 04:47:36 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/togovar-ncbigene.tsv (2024-10-07 03:10:12 +0900) -latest-prerequisite time: 2024-10-07 03:10:12 +0900 -................................ - -Rule for TTL (output/ttl/togovar-pubmed.ttl) ------------------------------- -Investigating output/ttl/togovar-pubmed.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 04:47:44 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/togovar-pubmed.tsv (2024-10-07 03:10:13 +0900) -latest-prerequisite time: 2024-10-07 03:10:13 +0900 -................................ - -Rule for TTL (output/ttl/togovar-refseq_rna.ttl) ------------------------------- -Investigating output/ttl/togovar-refseq_rna.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 05:31:12 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/togovar-refseq_rna.tsv (2024-10-07 03:11:37 +0900) -latest-prerequisite time: 2024-10-07 03:11:37 +0900 -................................ - -Rule for TTL (output/ttl/uberon-ncit_tissue.ttl) ------------------------------- -Investigating output/ttl/uberon-ncit_tissue.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 05:31:16 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/uberon-ncit_tissue.tsv (2024-10-07 03:11:38 +0900) -latest-prerequisite time: 2024-10-07 03:11:38 +0900 +--output/tsv/taxonomy-pubmed.tsv (2024-10-19 00:16:35 +0900) +latest-prerequisite time: 2024-10-19 00:16:35 +0900 ................................ Rule for TTL (output/ttl/uniprot-chembl_target.ttl) @@ -9256,12 +9606,12 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_insdc.ttl) Investigating output/ttl/uniprot_reference_proteome-assembly_insdc.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 12:35:35 +0900 +timestamp: 2024-10-19 11:03:04 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/uniprot_reference_proteome-assembly_insdc.tsv (2024-10-07 14:21:32 +0900) -latest-prerequisite time: 2024-10-07 14:21:32 +0900 +--output/tsv/uniprot_reference_proteome-assembly_insdc.tsv (2024-10-19 00:23:57 +0900) +latest-prerequisite time: 2024-10-19 00:23:57 +0900 ................................ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_refseq.ttl) @@ -9269,12 +9619,12 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-assembly_refseq.ttl) Investigating output/ttl/uniprot_reference_proteome-assembly_refseq.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 12:35:35 +0900 +timestamp: 2024-10-19 11:03:04 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/uniprot_reference_proteome-assembly_refseq.tsv (2024-10-07 14:21:33 +0900) -latest-prerequisite time: 2024-10-07 14:21:33 +0900 +--output/tsv/uniprot_reference_proteome-assembly_refseq.tsv (2024-10-19 00:23:57 +0900) +latest-prerequisite time: 2024-10-19 00:23:57 +0900 ................................ Rule for TTL (output/ttl/uniprot_reference_proteome-taxonomy.ttl) @@ -9282,12 +9632,12 @@ Rule for TTL (output/ttl/uniprot_reference_proteome-taxonomy.ttl) Investigating output/ttl/uniprot_reference_proteome-taxonomy.ttl class: Rake::FileTask task needed: true -timestamp: 2024-10-08 12:35:40 +0900 +timestamp: 2024-10-19 11:03:10 +0900 pre-requisites: --output/ttl/ () --config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/uniprot_reference_proteome-taxonomy.tsv (2024-10-07 14:21:33 +0900) -latest-prerequisite time: 2024-10-07 14:21:33 +0900 +--output/tsv/uniprot_reference_proteome-taxonomy.tsv (2024-10-19 00:23:58 +0900) +latest-prerequisite time: 2024-10-19 00:23:58 +0900 ................................ Rule for TTL (output/ttl/wikipathways-chebi.ttl) @@ -9303,58 +9653,6 @@ pre-requisites: latest-prerequisite time: 2024-09-06 11:55:18 +0900 ................................ -Rule for TTL (output/ttl/wikipathways-doid.ttl) ------------------------------- -Investigating output/ttl/wikipathways-doid.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 12:35:41 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/wikipathways-doid.tsv (2024-10-07 14:21:39 +0900) -latest-prerequisite time: 2024-10-07 14:21:39 +0900 -................................ - -Rule for TTL (output/ttl/wikipathways-hmdb.ttl) ------------------------------- -Investigating output/ttl/wikipathways-hmdb.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 12:35:41 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/wikipathways-hmdb.tsv (2024-10-07 14:21:41 +0900) -latest-prerequisite time: 2024-10-07 14:21:41 +0900 -................................ - -Rule for TTL (output/ttl/wikipathways-lipidmaps.ttl) ------------------------------- -Investigating output/ttl/wikipathways-lipidmaps.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 12:35:41 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/wikipathways-lipidmaps.tsv (2024-10-07 14:21:43 +0900) -latest-prerequisite time: 2024-10-07 14:21:43 +0900 -................................ - -Rule for TTL (output/ttl/wikipathways-ncbigene.ttl) ------------------------------- -Investigating output/ttl/wikipathways-ncbigene.ttl -class: Rake::FileTask -task needed: true -timestamp: 2024-10-08 12:35:42 +0900 -pre-requisites: ---output/ttl/ () ---config/dataset.yaml (2024-09-06 11:55:18 +0900) ---output/tsv/wikipathways-ncbigene.tsv (2024-10-07 14:21:56 +0900) -latest-prerequisite time: 2024-10-07 14:21:56 +0900 -................................ - Rule for TTL (output/ttl/wikipathways-uniprot.ttl) ------------------------------ Investigating output/ttl/wikipathways-uniprot.ttl @@ -9368,33 +9666,42 @@ pre-requisites: latest-prerequisite time: 2024-09-06 11:55:18 +0900 ................................ -### Update ID and Label TTL for atc if check_id_label_filesize false or check_id_label_timestamp false +### Update ID and Label TTL for atc if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/atc.ttl has no timestamp file -# File output/id-label/atc.ttl is created 3.521308591257083 days ago (will be updated when >5 days) -# => Preserving output/ttl/atc.ttl +# File output/id-label/atc.ttl is created 10.935750671219791 days ago (will be updated when >5 days) +## Update output/id-label/atc.ttl +< 2024-10-19T11:03:12 atc +togoid-rdfize-id-label atc +> 2024-10-19T11:03:13 atc ### Update ID and Label TTL for bioproject if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/bioproject.ttl is older than input/bioproject/download.lock ## Update output/id-label/bioproject.ttl -< 2024-10-12T01:06:24 bioproject +< 2024-10-19T11:03:13 bioproject togoid-rdfize-id-label bioproject -> 2024-10-12T01:06:30 bioproject +> 2024-10-19T11:03:19 bioproject ### Update ID and Label TTL for biosample if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/biosample.ttl is older than input/biosample/download.lock ## Update output/id-label/biosample.ttl -< 2024-10-12T01:06:30 biosample +< 2024-10-19T11:03:19 biosample togoid-rdfize-id-label biosample -> 2024-10-12T01:10:45 biosample +> 2024-10-19T11:07:33 biosample ### Update ID and Label TTL for cellosaurus if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/cellosaurus.ttl is newer than input/cellosaurus/download.lock # => Preserving output/ttl/cellosaurus.ttl -### Update ID and Label TTL for ec if check_id_label_filesize false or check_id_label_timestamp false +### Update ID and Label TTL for ec if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/ec.ttl has no timestamp file -# File output/id-label/ec.ttl is created 3.521377850979317 days ago (will be updated when >5 days) -# => Preserving output/ttl/ec.ttl -### Update ID and Label TTL for flybase_gene if check_id_label_filesize false or check_id_label_timestamp false +# File output/id-label/ec.ttl is created 10.935825536281598 days ago (will be updated when >5 days) +## Update output/id-label/ec.ttl +< 2024-10-19T11:07:33 ec +togoid-rdfize-id-label ec +> 2024-10-19T11:07:34 ec +### Update ID and Label TTL for flybase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/flybase_gene.ttl has no timestamp file -# File output/id-label/flybase_gene.ttl is created 3.520435547644549 days ago (will be updated when >5 days) -# => Preserving output/ttl/flybase_gene.ttl +# File output/id-label/flybase_gene.ttl is created 10.934888863093102 days ago (will be updated when >5 days) +## Update output/id-label/flybase_gene.ttl +< 2024-10-19T11:07:34 flybase_gene +togoid-rdfize-id-label flybase_gene +> 2024-10-19T11:08:54 flybase_gene ### Update ID and Label TTL for hmdb if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/hmdb.ttl is newer than input/hmdb/download.lock # => Preserving output/ttl/hmdb.ttl @@ -9404,86 +9711,128 @@ togoid-rdfize-id-label biosample ### Update ID and Label TTL for interpro if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/interpro.ttl is newer than input/interpro/download.lock # => Preserving output/ttl/interpro.ttl -### Update ID and Label TTL for mgi_allele if check_id_label_filesize false or check_id_label_timestamp false +### Update ID and Label TTL for mgi_allele if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_allele.ttl has no timestamp file -# File output/id-label/mgi_allele.ttl is created 3.520402103850139 days ago (will be updated when >5 days) -# => Preserving output/ttl/mgi_allele.ttl +# File output/id-label/mgi_allele.ttl is created 10.9357844113861 days ago (will be updated when >5 days) +## Update output/id-label/mgi_allele.ttl +< 2024-10-19T11:08:54 mgi_allele +togoid-rdfize-id-label mgi_allele +> 2024-10-19T11:08:55 mgi_allele ### Update ID and Label TTL for mgi_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_gene.ttl is older than input/mgi_gene/download.lock ## Update output/id-label/mgi_gene.ttl -< 2024-10-12T01:10:45 mgi_gene +< 2024-10-19T11:08:55 mgi_gene togoid-rdfize-id-label mgi_gene -> 2024-10-12T01:10:49 mgi_gene +> 2024-10-19T11:08:59 mgi_gene ### Update ID and Label TTL for mgi_genotype if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mgi_genotype.ttl is older than input/mgi_genotype/download.lock ## Update output/id-label/mgi_genotype.ttl -< 2024-10-12T01:10:49 mgi_genotype +< 2024-10-19T11:08:59 mgi_genotype togoid-rdfize-id-label mgi_genotype -> 2024-10-12T01:10:50 mgi_genotype -### Update ID and Label TTL for mirbase if check_id_label_filesize false or check_id_label_timestamp false +> 2024-10-19T11:09:00 mgi_genotype +### Update ID and Label TTL for mirbase if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/mirbase.ttl has no timestamp file -# File output/id-label/mirbase.ttl is created 3.519126312422095 days ago (will be updated when >5 days) -# => Preserving output/ttl/mirbase.ttl -### Update ID and Label TTL for pathbank if check_id_label_filesize false or check_id_label_timestamp false +# File output/id-label/mirbase.ttl is created 10.934519197338437 days ago (will be updated when >5 days) +## Update output/id-label/mirbase.ttl +< 2024-10-19T11:09:00 mirbase +togoid-rdfize-id-label mirbase +> 2024-10-19T11:10:51 mirbase +### Update ID and Label TTL for pathbank if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pathbank.ttl has no timestamp file -# File output/id-label/pathbank.ttl is created 3.519115404766759 days ago (will be updated when >5 days) -# => Preserving output/ttl/pathbank.ttl -### Update ID and Label TTL for pfam if check_id_label_filesize false or check_id_label_timestamp false +# File output/id-label/pathbank.ttl is created 10.935795488109596 days ago (will be updated when >5 days) +## Update output/id-label/pathbank.ttl +< 2024-10-19T11:10:51 pathbank +togoid-rdfize-id-label pathbank +> 2024-10-19T11:10:52 pathbank +### Update ID and Label TTL for pfam if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pfam.ttl has no timestamp file -# File output/id-label/pfam.ttl is created 3.51907346293478 days ago (will be updated when >5 days) -# => Preserving output/ttl/pfam.ttl +# File output/id-label/pfam.ttl is created 10.935765158842546 days ago (will be updated when >5 days) +## Update output/id-label/pfam.ttl +< 2024-10-19T11:10:52 pfam +togoid-rdfize-id-label pfam +> 2024-10-19T11:10:56 pfam ### Update ID and Label TTL for prosite if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/prosite.ttl is newer than input/prosite/download.lock # => Preserving output/ttl/prosite.ttl -### Update ID and Label TTL for prosite_prorule if check_id_label_filesize false or check_id_label_timestamp false +### Update ID and Label TTL for prosite_prorule if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/prosite_prorule.ttl has no timestamp file -# File output/id-label/prosite_prorule.ttl is created 3.519059139212211 days ago (will be updated when >5 days) -# => Preserving output/ttl/prosite_prorule.ttl -### Update ID and Label TTL for pubchem_pathway if check_id_label_filesize false or check_id_label_timestamp false +# File output/id-label/prosite_prorule.ttl is created 10.935795239985822 days ago (will be updated when >5 days) +## Update output/id-label/prosite_prorule.ttl +< 2024-10-19T11:10:56 prosite_prorule +togoid-rdfize-id-label prosite_prorule +> 2024-10-19T11:10:56 prosite_prorule +### Update ID and Label TTL for pubchem_pathway if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/pubchem_pathway.ttl has no timestamp file -# File output/id-label/pubchem_pathway.ttl is created 3.5190473011672454 days ago (will be updated when >5 days) -# => Preserving output/ttl/pubchem_pathway.ttl +# File output/id-label/pubchem_pathway.ttl is created 10.935787202604573 days ago (will be updated when >5 days) +## Update output/id-label/pubchem_pathway.ttl +< 2024-10-19T11:10:56 pubchem_pathway +togoid-rdfize-id-label pubchem_pathway +> 2024-10-19T11:10:57 pubchem_pathway ### Update ID and Label TTL for refseq_rna if check_id_label_filesize false or check_id_label_timestamp false # File output/id-label/refseq_rna.ttl is newer than input/refseq_rna/download.lock # => Preserving output/ttl/refseq_rna.ttl -### Update ID and Label TTL for rgd if check_id_label_filesize false or check_id_label_timestamp false +### Update ID and Label TTL for rgd if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/rgd.ttl has no timestamp file -# File output/id-label/rgd.ttl is created 3.5182867854017705 days ago (will be updated when >5 days) -# => Preserving output/ttl/rgd.ttl -### Update ID and Label TTL for sgd if check_id_label_filesize false or check_id_label_timestamp false +# File output/id-label/rgd.ttl is created 10.935038850717268 days ago (will be updated when >5 days) +## Update output/id-label/rgd.ttl +< 2024-10-19T11:10:57 rgd +togoid-rdfize-id-label rgd +> 2024-10-19T11:12:04 rgd +### Update ID and Label TTL for sgd if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/sgd.ttl has no timestamp file -# File output/id-label/sgd.ttl is created 3.5174040957320836 days ago (will be updated when >5 days) -# => Preserving output/ttl/sgd.ttl +# File output/id-label/sgd.ttl is created 10.934933934706274 days ago (will be updated when >5 days) +## Update output/id-label/sgd.ttl +< 2024-10-19T11:12:04 sgd +togoid-rdfize-id-label sgd +> 2024-10-19T11:13:21 sgd ### Update ID and Label TTL for swisslipids if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/swisslipids.ttl is older than input/swisslipids/download.lock ## Update output/id-label/swisslipids.ttl -< 2024-10-12T01:10:50 swisslipids +< 2024-10-19T11:13:21 swisslipids togoid-rdfize-id-label swisslipids -> 2024-10-12T01:10:55 swisslipids -### Update ID and Label TTL for tair if check_id_label_filesize false or check_id_label_timestamp false +> 2024-10-19T11:13:27 swisslipids +### Update ID and Label TTL for tair if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/tair.ttl has no timestamp file -# File output/id-label/tair.ttl is created 3.516525332245602 days ago (will be updated when >5 days) -# => Preserving output/ttl/tair.ttl -### Update ID and Label TTL for uniprot_reference_proteome if check_id_label_filesize false or check_id_label_timestamp false +# File output/id-label/tair.ttl is created 10.934941172151504 days ago (will be updated when >5 days) +## Update output/id-label/tair.ttl +< 2024-10-19T11:13:27 tair +togoid-rdfize-id-label tair +> 2024-10-19T11:14:43 tair +### Update ID and Label TTL for uniprot_reference_proteome if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/uniprot_reference_proteome.ttl has no timestamp file -# File output/id-label/uniprot_reference_proteome.ttl is created 3.516479503725787 days ago (will be updated when >5 days) -# => Preserving output/ttl/uniprot_reference_proteome.ttl -### Update ID and Label TTL for vgnc if check_id_label_filesize false or check_id_label_timestamp false +# File output/id-label/uniprot_reference_proteome.ttl is created 10.935784606277986 days ago (will be updated when >5 days) +## Update output/id-label/uniprot_reference_proteome.ttl +< 2024-10-19T11:14:43 uniprot_reference_proteome +togoid-rdfize-id-label uniprot_reference_proteome +> 2024-10-19T11:14:47 uniprot_reference_proteome +### Update ID and Label TTL for vgnc if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/vgnc.ttl has no timestamp file -# File output/id-label/vgnc.ttl is created 3.5155922544574767 days ago (will be updated when >5 days) -# => Preserving output/ttl/vgnc.ttl -### Update ID and Label TTL for wormbase_gene if check_id_label_filesize false or check_id_label_timestamp false +# File output/id-label/vgnc.ttl is created 10.93494318109243 days ago (will be updated when >5 days) +## Update output/id-label/vgnc.ttl +< 2024-10-19T11:14:47 vgnc +togoid-rdfize-id-label vgnc +> 2024-10-19T11:16:04 vgnc +### Update ID and Label TTL for wormbase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/wormbase_gene.ttl has no timestamp file -# File output/id-label/wormbase_gene.ttl is created 3.5147101784191315 days ago (will be updated when >5 days) -# => Preserving output/ttl/wormbase_gene.ttl -### Update ID and Label TTL for xenbase_gene if check_id_label_filesize false or check_id_label_timestamp false +# File output/id-label/wormbase_gene.ttl is created 10.934948891164051 days ago (will be updated when >5 days) +## Update output/id-label/wormbase_gene.ttl +< 2024-10-19T11:16:04 wormbase_gene +togoid-rdfize-id-label wormbase_gene +> 2024-10-19T11:17:20 wormbase_gene +### Update ID and Label TTL for xenbase_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/xenbase_gene.ttl has no timestamp file -# File output/id-label/xenbase_gene.ttl is created 3.513829653262627 days ago (will be updated when >5 days) -# => Preserving output/ttl/xenbase_gene.ttl -### Update ID and Label TTL for zfin_gene if check_id_label_filesize false or check_id_label_timestamp false +# File output/id-label/xenbase_gene.ttl is created 10.934951875403565 days ago (will be updated when >5 days) +## Update output/id-label/xenbase_gene.ttl +< 2024-10-19T11:17:20 xenbase_gene +togoid-rdfize-id-label xenbase_gene +> 2024-10-19T11:18:37 xenbase_gene +### Update ID and Label TTL for zfin_gene if check_id_label_filesize false or check_id_label_timestamp true # File output/id-label/zfin_gene.ttl has no timestamp file -# File output/id-label/zfin_gene.ttl is created 3.5129425076526504 days ago (will be updated when >5 days) -# => Preserving output/ttl/zfin_gene.ttl +# File output/id-label/zfin_gene.ttl is created 10.934947818576354 days ago (will be updated when >5 days) +## Update output/id-label/zfin_gene.ttl +< 2024-10-19T11:18:37 zfin_gene +togoid-rdfize-id-label zfin_gene +> 2024-10-19T11:19:53 zfin_gene Rule for ID and Label TTL (output/id-label/hmdb.ttl) ------------------------------ Investigating output/id-label/hmdb.ttl @@ -9509,4 +9858,4 @@ latest-prerequisite time: 2024-09-06 11:55:18 +0900 ................................ -*** Finished: 2024-10-12T01:10:55 *** +*** Finished: 2024-10-19T11:19:53 *** From 55d819086e027716069930123c209c7168222889 Mon Sep 17 00:00:00 2001 From: sh-ikeda Date: Sat, 19 Oct 2024 13:26:04 +0900 Subject: [PATCH 2/5] fix filename --- config/hgnc-ccds/config.yaml | 2 +- config/hgnc-ec/config.yaml | 2 +- config/hgnc-ensembl_gene/config.yaml | 2 +- config/hgnc-hgnc_symbol/config.yaml | 2 +- config/hgnc-insdc/config.yaml | 2 +- config/hgnc-lrg/config.yaml | 2 +- config/hgnc-mgi_gene/config.yaml | 2 +- config/hgnc-mirbase/config.yaml | 2 +- config/hgnc-ncbigene/config.yaml | 2 +- config/hgnc-omim_gene/config.yaml | 2 +- config/hgnc-pubmed/config.yaml | 2 +- config/hgnc-refseq_genomic/config.yaml | 2 +- config/hgnc-refseq_rna/config.yaml | 2 +- config/hgnc-rgd/config.yaml | 2 +- config/hgnc-uniprot/config.yaml | 2 +- 15 files changed, 15 insertions(+), 15 deletions(-) diff --git a/config/hgnc-ccds/config.yaml b/config/hgnc-ccds/config.yaml index a60ea1c5..a7bef0cf 100644 --- a/config/hgnc-ccds/config.yaml +++ b/config/hgnc-ccds/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$25{gsub("\"","",$25); split($25,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$25{gsub("\"","",$25); split($25,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt diff --git a/config/hgnc-ec/config.yaml b/config/hgnc-ec/config.yaml index bda48eb5..4b43b235 100644 --- a/config/hgnc-ec/config.yaml +++ b/config/hgnc-ec/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$47{gsub("\"","",$47); split($47,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$47{gsub("\"","",$47); split($47,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt diff --git a/config/hgnc-ensembl_gene/config.yaml b/config/hgnc-ensembl_gene/config.yaml index 97a3caab..63895a6f 100644 --- a/config/hgnc-ensembl_gene/config.yaml +++ b/config/hgnc-ensembl_gene/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$20{gsub("\"","",$20); split($20,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$20{gsub("\"","",$20); split($20,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt diff --git a/config/hgnc-hgnc_symbol/config.yaml b/config/hgnc-hgnc_symbol/config.yaml index 443de32f..2218ae7b 100644 --- a/config/hgnc-hgnc_symbol/config.yaml +++ b/config/hgnc-hgnc_symbol/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$2{print substr($1,6) "\t" $2}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$2{print substr($1,6) "\t" $2}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt diff --git a/config/hgnc-insdc/config.yaml b/config/hgnc-insdc/config.yaml index 6029b9dd..aca963a6 100644 --- a/config/hgnc-insdc/config.yaml +++ b/config/hgnc-insdc/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$23{gsub("\"","",$23); split($23,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$23{gsub("\"","",$23); split($23,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt diff --git a/config/hgnc-lrg/config.yaml b/config/hgnc-lrg/config.yaml index 5eb3ed16..a4ff85c2 100644 --- a/config/hgnc-lrg/config.yaml +++ b/config/hgnc-lrg/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$30{gsub("\"","",$30); split($30,a,"|"); for(k in a){if(a[k]~/^LRG_[0-9]+$/) print substr($1,6) "\t" a[k]}}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$30{gsub("\"","",$30); split($30,a,"|"); for(k in a){if(a[k]~/^LRG_[0-9]+$/) print substr($1,6) "\t" a[k]}}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt diff --git a/config/hgnc-mgi_gene/config.yaml b/config/hgnc-mgi_gene/config.yaml index 6fbd8998..1e4b12d4 100644 --- a/config/hgnc-mgi_gene/config.yaml +++ b/config/hgnc-mgi_gene/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$28{gsub("\"","",$28); split($28,a,"|"); for(k in a)print substr($1,6) "\t" substr(a[k],5)}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$28{gsub("\"","",$28); split($28,a,"|"); for(k in a)print substr($1,6) "\t" substr(a[k],5)}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt diff --git a/config/hgnc-mirbase/config.yaml b/config/hgnc-mirbase/config.yaml index c2012e51..1f874461 100644 --- a/config/hgnc-mirbase/config.yaml +++ b/config/hgnc-mirbase/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$33{gsub("\"","",$33); split($33,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$33{gsub("\"","",$33); split($33,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt diff --git a/config/hgnc-ncbigene/config.yaml b/config/hgnc-ncbigene/config.yaml index 62e780c7..632fa807 100644 --- a/config/hgnc-ncbigene/config.yaml +++ b/config/hgnc-ncbigene/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$19{gsub("\"","",$19); split($19,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$19{gsub("\"","",$19); split($19,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt diff --git a/config/hgnc-omim_gene/config.yaml b/config/hgnc-omim_gene/config.yaml index abad0439..2087ab8b 100644 --- a/config/hgnc-omim_gene/config.yaml +++ b/config/hgnc-omim_gene/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$32{gsub("\"","",$32); split($32,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$32{gsub("\"","",$32); split($32,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt diff --git a/config/hgnc-pubmed/config.yaml b/config/hgnc-pubmed/config.yaml index 729c49b4..c845a487 100644 --- a/config/hgnc-pubmed/config.yaml +++ b/config/hgnc-pubmed/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$27{gsub("\"","",$27); split($27,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$27{gsub("\"","",$27); split($27,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt diff --git a/config/hgnc-refseq_genomic/config.yaml b/config/hgnc-refseq_genomic/config.yaml index 053d54d3..a3844af5 100644 --- a/config/hgnc-refseq_genomic/config.yaml +++ b/config/hgnc-refseq_genomic/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$24{gsub("\"","",$24); split($24,a,"|"); for(k in a){if(a[k]~/^NG_/)print substr($1,6) "\t" a[k]}}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$24{gsub("\"","",$24); split($24,a,"|"); for(k in a){if(a[k]~/^NG_/)print substr($1,6) "\t" a[k]}}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt diff --git a/config/hgnc-refseq_rna/config.yaml b/config/hgnc-refseq_rna/config.yaml index 1853d552..fb18ed8c 100644 --- a/config/hgnc-refseq_rna/config.yaml +++ b/config/hgnc-refseq_rna/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$24{gsub("\"","",$24); split($24,a,"|"); for(k in a){if(a[k]~/^[NX][MR]_/)print substr($1,6) "\t" a[k]}}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$24{gsub("\"","",$24); split($24,a,"|"); for(k in a){if(a[k]~/^[NX][MR]_/)print substr($1,6) "\t" a[k]}}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt diff --git a/config/hgnc-rgd/config.yaml b/config/hgnc-rgd/config.yaml index 039c5458..80397551 100644 --- a/config/hgnc-rgd/config.yaml +++ b/config/hgnc-rgd/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$29{gsub("\"","",$29); split($29,a,"|"); for(k in a)print substr($1,6) "\t" substr(a[k],5)}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$29{gsub("\"","",$29); split($29,a,"|"); for(k in a)print substr($1,6) "\t" substr(a[k],5)}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt diff --git a/config/hgnc-uniprot/config.yaml b/config/hgnc-uniprot/config.yaml index eb2a4d91..83008cc7 100644 --- a/config/hgnc-uniprot/config.yaml +++ b/config/hgnc-uniprot/config.yaml @@ -4,4 +4,4 @@ link: file: sample.tsv update: frequency: Bimonthly - method: awk -F "\t" 'FNR>=2&&$26{gsub("\"","",$26); split($26,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.tsv + method: awk -F "\t" 'FNR>=2&&$26{gsub("\"","",$26); split($26,a,"|"); for(k in a)print substr($1,6) "\t" a[k]}' $TOGOID_ROOT/input/hgnc/hgnc_complete_set.txt From 2114f206bab0ab4ffd2a839ff40db9f8f3452aca Mon Sep 17 00:00:00 2001 From: sh-ikeda Date: Sat, 19 Oct 2024 13:29:08 +0900 Subject: [PATCH 3/5] fix filename --- Rakefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Rakefile b/Rakefile index 0250bc05..485f5962 100644 --- a/Rakefile +++ b/Rakefile @@ -633,7 +633,7 @@ namespace :prepare do $stderr.puts "## Prepare input files for HGNC" download_lock(INPUT_HGNC_DIR) do updated = false - input_file = "#{INPUT_HGNC_DIR}/hgnc_complete_set.tsv" + input_file = "#{INPUT_HGNC_DIR}/hgnc_complete_set.txt" input_url = "https://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt" if update_input_file?(input_file, input_url) download_file(INPUT_HGNC_DIR, input_url) From d85dcc349c0dc02e600bfdd5f3f2d89b42ec0d68 Mon Sep 17 00:00:00 2001 From: sh-ikeda Date: Sat, 19 Oct 2024 13:36:06 +0900 Subject: [PATCH 4/5] rerun hgnc --- log/pair_count.tsv | 24 ++++++++++++------------ log/pair_count_history.tsv | 2 +- 2 files changed, 13 insertions(+), 13 deletions(-) diff --git a/log/pair_count.tsv b/log/pair_count.tsv index e5d9d4b7..26195e27 100644 --- a/log/pair_count.tsv +++ b/log/pair_count.tsv @@ -68,19 +68,19 @@ glytoucan-uniprot-TIO_000126.tsv 402 glytoucan-uniprot-TIO_000128.tsv 310 glytoucan-uniprot.tsv 82906 hgnc-ccds.tsv 35510 -hgnc-ec.tsv 2049 -hgnc-ensembl_gene.tsv 41234 -hgnc-hgnc_symbol.tsv 43873 -hgnc-insdc.tsv 21166 +hgnc-ec.tsv 2083 +hgnc-ensembl_gene.tsv 41244 +hgnc-hgnc_symbol.tsv 43882 +hgnc-insdc.tsv 21162 hgnc-lrg.tsv 1325 -hgnc-mgi_gene.tsv 24071 +hgnc-mgi_gene.tsv 24072 hgnc-mirbase.tsv 1912 -hgnc-ncbigene.tsv 43815 -hgnc-omim_gene.tsv 17277 -hgnc-pubmed.tsv 34911 -hgnc-refseq_genomic.tsv 13531 -hgnc-refseq_rna.tsv 28774 -hgnc-rgd.tsv 18940 +hgnc-ncbigene.tsv 43813 +hgnc-omim_gene.tsv 17320 +hgnc-pubmed.tsv 34994 +hgnc-refseq_genomic.tsv 13532 +hgnc-refseq_rna.tsv 28776 +hgnc-rgd.tsv 18945 hgnc-uniprot.tsv 20379 hmdb-chebi.tsv 13701 hmdb-inchi_key.tsv 217899 @@ -270,4 +270,4 @@ wikipathways-hmdb.tsv 4125 wikipathways-lipidmaps.tsv 1398 wikipathways-ncbigene.tsv 30268 wikipathways-uniprot.tsv 33518 -total 5184078291 +total 5184078473 diff --git a/log/pair_count_history.tsv b/log/pair_count_history.tsv index 1e8a8586..6103348d 100644 --- a/log/pair_count_history.tsv +++ b/log/pair_count_history.tsv @@ -60,4 +60,4 @@ Date affy_probeset-ncbigene assembly_insdc-bioproject assembly_insdc-biosample a 2024-09-28 19063 2283159 2225812 2150193 2546485 216801 278016 104586 19849642 9409388 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 2937727 3025517 4145651 1986712 3025834 1635593 1859264 20797 115826 3340026 4019 4849 5671 54855 12969337 15910019 47792 14749031 5546630 12969340 224377 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2049 41234 43873 21166 1325 24071 1912 43815 17277 34911 13531 28774 18940 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30288 1615604 21171 1283 113855 473753 1274 759739513 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56430 24587 110329 90619 79034 7836 124600 400728 10712 574 1486 8352 9693 10380 2390 11640889 13437484 14165019 25078 100805649 43830 71684 17541 18530 211759 67906210 66278052 47288 6471 32835 56097873 112162 28779 46840 27162 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9522934 1453 4965 174843 2372556 10789 69203 118657562 33861 69387 1253395 2877 623594 1267 268044 13144 40633 348 393545 868078 201371 3318 14387 194 672687 168636138 267059416 227230 65546825 190869 6191600 56922967 65576846 206037 7598 4447 138072 1480 41203851 528400 31608624 329141 35358694 613078 40139217 34193817 30937045 31262333 31281566 31281373 531842 32784770 33125990 33149472 33142065 33145755 31629738 4276 26026 593209 50502 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10144 65716 39722925 9498084 9712712 9712712 604164314 81986 260978721 230595 12687882 7653121 16188 7077 8227 384047 281259 45015597 245896766 245896766 588007 190 656198 11471 1148 4119 1398 30258 33518 5240093853 2024-10-08 19063 2283159 2225812 2150193 2546485 217446 278826 104586 19938580 9431518 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937745 3025875 4162525 1986846 3026191 1634429 1859346 20797 115826 3340026 4019 4849 5671 54855 12969337 15910019 47792 14749031 5546630 12969340 224377 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2049 41234 43873 21166 1325 24071 1912 43815 17277 34911 13531 28774 18940 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56428 24587 110373 90619 79034 7837 124602 400771 10712 574 1486 8352 9693 10380 2390 11660930 13459019 14189546 25078 101043576 43829 71684 17541 18526 211759 68060620 66432148 47288 6471 32835 56251350 112162 28779 46842 27163 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9547208 1455 4965 174843 2372556 10789 69203 118680448 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 168636384 267059416 227230 65546825 190869 6191600 56922967 65576846 216654 7719 4435 142680 1511 41448659 529030 31645689 329141 35486202 615018 40263951 34290431 30997361 31319829 31341882 31341689 532472 32860319 33183885 33225215 33217614 33206609 31666803 4276 26026 593209 50523 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 11471 1148 4119 1398 30258 33518 5194479012 2024-10-12 19063 2283159 2225812 2150193 2546485 217809 279413 104586 19988521 9447146 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937791 3044255 4171173 1988452 3044575 1635664 1860371 20798 115826 3340026 4019 4849 5671 54855 12969337 15910019 47792 14749031 5546630 12969340 224377 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2049 41234 43873 21166 1325 24071 1912 43815 17277 34911 13531 28774 18940 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24587 110437 90618 79034 7837 124623 400910 10712 574 1486 8352 9693 10380 2390 11654277 13449374 14177749 25078 101041913 43827 71684 17541 18527 211762 68217911 66619410 47288 6471 32835 56353463 112162 28779 46842 27163 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9561234 1455 4965 174843 2372556 10789 69203 118680448 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154618594 267059416 227230 65546825 190869 6191600 56922967 65576846 216654 7719 4435 142680 1511 41448659 529462 31680248 329243 35570093 616586 40350221 34372201 31035975 31352287 31380496 31380303 532904 32903026 33216964 33268661 33260321 33246345 31701362 4276 26026 593209 50493 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 11471 1148 4119 1398 30258 33518 5181681751 -2024-10-19 19063 2283159 2225812 2150193 2546485 218318 280110 104586 20027457 9463924 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937807 3048112 4176542 1989799 3048432 1636833 1861412 20798 115826 3340026 4019 4849 5671 55423 12969337 15910019 47792 14749031 5546630 12969340 241195 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2049 41234 43873 21166 1325 24071 1912 43815 17277 34911 13531 28774 18940 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24587 110465 90618 79034 7837 124623 400910 10712 574 1486 8352 9693 10380 2390 11654277 13449374 14177749 25078 101431326 43828 71683 17541 18530 211763 68719760 66732541 47288 6471 32835 56873692 112162 28779 46842 27163 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9575886 1455 4965 174843 2372556 10789 69203 118727283 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154618423 267059416 227230 65546825 190869 6191600 56922967 65576846 216654 7719 4435 142680 1511 41448659 529783 31699855 329243 35659853 617870 40455586 34436063 31083409 31394401 31427930 31427737 533225 32951299 33259254 33317034 33308594 33294197 31720969 4276 26026 593209 50481 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 11471 1148 4125 1398 30268 33518 5184078291 +2024-10-19 19063 2283159 2225812 2150193 2546485 218318 280110 104586 20027457 9463924 75821 41448 10615 175447 34347 3101919 3101919 4931 8211 11771 1915184 47707 14012 1878399 433145 1449263 2126 11847 10947 34588 3549 8047 9094 9094 1533 1434 2937807 3048112 4176542 1989799 3048432 1636833 1861412 20798 115826 3340026 4019 4849 5671 55423 12969337 15910019 47792 14749031 5546630 12969340 241195 55211171 241612 40165483 141 5046 155799 290 1270 82906 82906 402 310 35510 2083 41244 43882 21162 1325 24072 1912 43813 17320 34994 13532 28776 18945 20379 13701 217899 522 104230 275237 8814 220065 137689 113135 59409158 193975949 1533582 1533178 30282 1645155 21310 1282 114937 477238 1274 770832917 199 305 130 12929 48152 12349 137319849 6318 16674 16849 21567 7229 11043 9063 56426 24587 110465 90618 79034 7837 124623 400910 10712 574 1486 8352 9693 10380 2390 11654277 13449374 14177749 25078 101431326 43828 71683 17541 18530 211763 68719760 66732541 47288 6471 32835 56873692 112162 28779 46842 27163 27199 2533621 2925554 5849918 14432954 4319 4337 4316 4298 1192 1798 7832 8040 1685211 726658 530587 339565 341431 9575886 1455 4965 174843 2372556 10789 69203 118727283 33861 69387 1253395 2877 623594 1267 270070 13144 41304 348 393545 868219 203666 3318 14709 194 679876 154618423 267059416 227230 65546825 190869 6191600 56922967 65576846 216654 7719 4435 142680 1511 41448659 529783 31699855 329243 35659853 617870 40455586 34436063 31083409 31394401 31427930 31427737 533225 32951299 33259254 33317034 33308594 33294197 31720969 4276 26026 593209 50481 745335 66877211 72473309 287277970 60732887 935843 60001809 692119 173346179 2578 10336 66728 41313492 9613808 9834392 9834392 532822218 82524 264947440 237103 12855457 7617387 16357 7263 7981 390829 282944 45329880 248838887 248838887 641755 191 698680 11471 1148 4125 1398 30268 33518 5184078473 From bf51f9a0704b796476ece2b81af0331f8db80067 Mon Sep 17 00:00:00 2001 From: sh-ikeda Date: Mon, 21 Oct 2024 10:45:58 +0900 Subject: [PATCH 5/5] weekly update --- docs/help.md | 4 ++-- docs/help_ja.md | 4 ++-- docs/news.md | 3 +++ 3 files changed, 7 insertions(+), 4 deletions(-) diff --git a/docs/help.md b/docs/help.md index 8c7d2790..ec84e05e 100644 --- a/docs/help.md +++ b/docs/help.md @@ -1,5 +1,5 @@ # TogoID ver. 2.0 -Datasets last updated: 2024-10-15 +Datasets last updated: 2024-10-21 ## About - [TogoID](https://togoid.dbcls.jp/) is an ID conversion service implementing unique features with an intuitive web interface and an API for programmatic access. TogoID supports datasets from various biological categories such as gene, protein, chemical compound, pathway, disease, etc. TogoID users can perform exploratory multistep conversions to find a path among IDs. To guide the interpretation of biological meanings in the conversions, we crafted an [ontology](https://togoid.dbcls.jp/ontology) that defines the semantics of the dataset relations. @@ -22,7 +22,7 @@ Shuya Ikeda, Hiromasa Ono, Tazro Ohta, Hirokazu Chiba, Yuki Naito, Yuki Moriya, - [API Documentation (Swagger)](https://togoid.dbcls.jp/apidoc/) -## Statistics (as of 2024-10-15) +## Statistics (as of 2024-10-21) - Number of target datasets - 105 (from 73 databases) - For details on the target DBs and ID examples, please refer to the "DATASETS" tab. diff --git a/docs/help_ja.md b/docs/help_ja.md index 56e81a6c..c8367c3d 100644 --- a/docs/help_ja.md +++ b/docs/help_ja.md @@ -1,5 +1,5 @@ # TogoID ver. 2.0 -Datasets last updated: 2024-10-15 +Datasets last updated: 2024-10-21 ## About - [TogoID](https://togoid.dbcls.jp/) は、直感的なインターフェースにより生命科学系データベース(DB)間のつながりを探索的に確認しながらID変換を行うことができるウェブアプリケーションです。同一の実体を指すID間の変換だけでなく、関連する別のカテゴリーのIDへの変換も可能です。また、直接リンクされていないDBのID間でも、他のDBを経由した変換を探索することができます。 @@ -28,7 +28,7 @@ Datasets last updated: 2024-10-15 - [API Documentation (Swagger)](https://togoid.dbcls.jp/apidoc/) -## 統計 (2024-10-15) +## 統計 (2024-10-21) - 対象データセット数 - 105 (73 のデータベースに由来) - 対象DBの詳細やID例については、"DATASETS" タブ からご覧いただけます。 diff --git a/docs/news.md b/docs/news.md index d85ef647..e363ffb2 100644 --- a/docs/news.md +++ b/docs/news.md @@ -5,6 +5,9 @@ - TogoID now supports handling multiple semantic relations between the same dataset pair (e.g., try converting between GlyTouCan and UniProt). A detailed document is currently being prepared. +# 2024-10-21 +- Weekly update has been completed. + # 2024-10-15 - Weekly update has been completed.