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Plot average ancestor length in time and genome bins #20

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jeromekelleher opened this issue Jun 1, 2023 · 4 comments
Open

Plot average ancestor length in time and genome bins #20

jeromekelleher opened this issue Jun 1, 2023 · 4 comments
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@jeromekelleher
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We'd like a plot that summarises the distribution of ancestor lengths over time and along the genome.

The x axis is genome coordinates, binned in to N windows

The y axis is time, binned into K windows

We can the plot the average ancestor length as a colour intensity in this N x K matrix

See also #19

@jeromekelleher
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I guess ancestor length is something that we'd add to the node data table (#39)? It would be an ancestral_span or something?

@jeromekelleher
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This is something we'd add to the node panel I think all right, it's a property of the actual genomes.

@savitakartik
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There's an open PR for this: #68
Although, we were not sure if we wanted to include this feature, so I'm happy to keep it closed/revisit.

@benjeffery
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Ah! Sorry didn't realise. I'll reopen till we decide.

@benjeffery benjeffery reopened this Oct 16, 2024
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