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+1. In fact it should probably have several exclusions, off the top of my head these seem reasonable:
don't mess with .pyc files
possibly don't do the Version(..., NEXT, ...) substitution if it isn't in a .py file?
don't recurse into __pycache__ at all
don't touch *~ or other backup-like files
possibly don't even recurse into subdirectories that don't have an __init__.py ?
Perhaps we should implement the most-obvious of these and then allow exclusion patterns to be added in a setup.cfg section if it turns out some projects have more complicated needs
The ability to exclude specific files would be useful, for example so that the Twisted compatibility policy can include examples of the NEXT substitution syntaxes.
It doesn't seem like incremental should mangle bytecode files:
Observed with incremental 17.5.0
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