.gitignore

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
# C extensions
*.so
# Distribution / packaging
.Python
#env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
dask-worker-space/
*.egg-info/
.installed.cfg
*.egg
*.err
*.out
*.db
*.py*.sh
*.tsv
*.csv
*.gz*
# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec
# Installer logs
pip-log.txt
pip-delete-this-directory.txt
# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.pdf
# Translations
*.mo
*.pot
# Django stuff:
*.log
# Sphinx documentation
docs/_build/
# PyBuilder
target/
# DotEnv configuration
.env
# conda
.conda
# Database
*.db
*.rdb
# Pycharm
.idea
# Jupyter NB Checkpoints
.ipynb_checkpoints/
# exclude data from source control by default
/data/
#snakemake
.snakemake/
# exclude test data used for development
to_be_deleted/test_data/data/ref
to_be_deleted/test_data/data/reads
#logs
logs/
# vscode
.vscode/
# .java/fonts dir get created when creating fastqc conda env
.java/
/.vscode/settings.json
.Rproj.user
BiocSwirl.Rproj
README.html