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Gene Erichment Analysis #11

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sdhutchins opened this issue Aug 6, 2022 · 3 comments
Open
2 tasks

Gene Erichment Analysis #11

sdhutchins opened this issue Aug 6, 2022 · 3 comments
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@Poojas241

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@sdhutchins
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  • Find geneset enrichment analysis (enrichR) to incorporate into our shiny app
  • Use the below genes in those tools to start writing code and functions to be used in our shiny app
BPIFA1
SCGB2A1
MUC5B
PRR4
BPIFB1
ZG16B
ANXA1
IRS1
APOA1
LTF
PIGR
PIP
NTC1
NTC2
PTEN
PIK3R1
PIK3CA
@sdhutchins
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Check out https://github.com/nasqar/ClusterProfShinyGSEA

@Poojas241
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Poojas241 commented Aug 6, 2022 •
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Gene enrichment analysis: http://bioinformatics.sdstate.edu/go/
https://gencore.bio.nyu.edu/gene-set-enrichment-analysis-in-minutes-with-nasqar/

@sdhutchins
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Gene enrichment analysis: http://bioinformatics.sdstate.edu/go/ https://gencore.bio.nyu.edu/gene-set-enrichment-analysis-in-minutes-with-nasqar/

Awesome! We can take stuff from here: https://github.com/iDEP-SDSU/idep/tree/master/shinyapps/go

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@sdhutchins @Poojas241