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variant_calling.yml
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variant_calling.yml
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name: variant_calling
channels:
- conda-forge
- bioconda
- nodefaults
dependencies:
- conda-forge::args==0.1.0
- conda-forge::atomicwrites==1.4.0
- conda-forge::attrs==20.3.0
- conda-forge::awesome-slugify==1.6.5
- conda-forge::backports==1.0
- conda-forge::backports.functools_lru_cache==1.6.1
- conda-forge::backports_abc==0.5
- conda-forge::backports.functools_lru_cache==1.6.1
- conda-forge::backports_abc==0.5
- bioconda::biopython==1.68
- conda-forge::brotlipy==0.7.0
- conda-forge::bzip2==1.0.8
- conda-forge::ca-certificates==2020.12.5
- conda-forge::certifi==2019.11.28
- conda-forge::cffi==1.14.0
- conda-forge::chardet==3.0.4
- conda-forge::click==7.1.2
- conda-forge::clint==0.5.1
- conda-forge::coloredlogs==14.0
- conda-forge::configparser==3.7.3
- conda-forge::contextlib2==0.6.0.post1
- conda-forge::cryptography==2.8
- conda-forge::cycler==0.10.0
- conda-forge::cython==0.29.15
- bioconda::cyvcf2==0.10.0
- conda-forge::dbus==1.13.6
- conda-forge::decorator==4.4.2
- conda-forge::docopt==0.6.2
- conda-forge::enum34==1.1.10
- conda-forge::expat==2.2.10
- conda-forge::fontconfig==2.13.1
- conda-forge::freetype==2.10.4
- conda-forge::funcsigs==1.0.2
- conda-forge::functools32==3.2.3.2
- conda-forge::futures==3.3.0
- conda-forge::gettext==0.19.8.1
- conda-forge::glib==2.66.3
- conda-forge::gst-plugins-base==1.14.5
- conda-forge::gstreamer==1.14.5
- conda-forge::humanfriendly==8.1
- conda-forge::icu==64.2
- conda-forge::idna==2.10
- conda-forge::importlib-metadata==1.5.0
- conda-forge::importlib_metadata==1.5.0
- conda-forge::intervaltree==3.0.2
- conda-forge::ipaddress==1.0.23
- conda-forge::jinja2==2.11.3
- conda-forge::jpeg==9d
- conda-forge::kiwisolver==1.1.0
- conda-forge::krb5==1.17.2
- conda-forge::ld_impl_linux-64==2.35.1
- conda-forge::libblas==3.9.0
- conda-forge::libcblas==3.9.0
- conda-forge::libcurl==7.71.1
- conda-forge::libedit==3.1.20191231
- conda-forge::libffi==3.2.1
- conda-forge::libgcc-ng==9.3.0
- conda-forge::libgfortran-ng==7.5.0
- conda-forge::libgfortran4==7.5.0
- conda-forge::libglib==2.66.3
- conda-forge::libgomp==9.3.0
- conda-forge::libiconv==1.16
- conda-forge::liblapack==3.9.0
- conda-forge::libopenblas==0.3.12
- conda-forge::libpng==1.6.37
- conda-forge::libssh2==1.9.0
- conda-forge::libstdcxx-ng==9.3.0
- conda-forge::libtiff==4.2.0
- conda-forge::libuuid==2.32.1
- conda-forge::libwebp-base==1.2.0
- conda-forge::libxcb==1.13
- conda-forge::libxml2==2.9.10
- conda-forge::lz4-c==1.9.3
- conda-forge::markupsafe==1.1.1
- conda-forge::matplotlib==2.2.5
- conda-forge::matplotlib-base==2.2.5
- bioconda::mmtf-python==1.0.2
- conda-forge::monotonic==1.5
- conda-forge::more-itertools==5.0.0
- conda-forge::msgpack-python==1.0.0
- conda-forge::ncurses==6.2
- conda-forge::networkx==2.2
- conda-forge::numpy==1.16.5
- conda-forge::olefile==0.46
- conda-forge::openjdk==10.0.2
- conda-forge::openssl==1.1.1j
- conda-forge::packaging==20.9
- conda-forge::pathlib2==2.3.5
- conda-forge::pcre==8.44
- bioconda::picard==2.18.29
- conda-forge::pillow==6.2.1
- conda-forge::pip==20.1.1
- conda-forge::pluggy==0.12.0
- conda-forge::pthread-stubs==0.4
- conda-forge::py==1.10.0
- conda-forge::pycparser==2.20
- conda-forge::pyopenssl==19.1.0
- conda-forge::pyparsing==2.4.7
- conda-forge::pyqt==5.9.2
- conda-forge::pysocks==1.7.1
- conda-forge::pytest==4.6.4
- conda-forge::pytest-runner==5.3.0
- conda-forge::python==2.7.15
- conda-forge::python-dateutil==2.8.1
- conda-forge::python_abi==2.7
- conda-forge::pytz==2020.1
- conda-forge::qt==5.9.7
- conda-forge::readline==8.0
- bioconda::regex==2016.06.24
- conda-forge::reportlab==3.5.42
- conda-forge::requests==2.25.1
- conda-forge::scandir==1.10.0
- conda-forge::scipy==1.2.1
- conda-forge::setuptools==44.0.0
- conda-forge::singledispatch==3.6.0
- conda-forge::sip==4.19.8
- conda-forge::six==1.15.0
- conda-forge::sortedcontainers==2.3.0
- conda-forge::sqlite==3.34.0
- conda-forge::subprocess32==3.5.4
- conda-forge::tabulate==0.8.9
- conda-forge::tk==8.6.10
- conda-forge::tornado==5.1.1
- conda-forge::unidecode==1.1.2
- conda-forge::urllib3==1.26.3
- bioconda::vcfkit==0.1.6
- bioconda::vcflib==1.0.0_rc2
- conda-forge::wcwidth==0.2.5
- conda-forge::wheel==0.36.2
- conda-forge::xorg-libxau==1.0.9
- conda-forge::xorg-libxdmcp==1.1.3
- conda-forge::xz==5.2.5
- bioconda::yahmm==1.1.3
- conda-forge::zipp==1.0.0
- conda-forge::zlib==1.2.11
- conda-forge::zstd==1.4.8
- bioconda::samtools==1.11
- conda-forge::ipykernel==4.10.0