From 795d9b66ed730d8ccf8c1197d8639fc9996db84c Mon Sep 17 00:00:00 2001 From: gwirn <71886945+gwirn@users.noreply.github.com> Date: Tue, 6 Feb 2024 13:31:47 +0100 Subject: [PATCH] Update README.md --- example/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/example/README.md b/example/README.md index d44d524..c8be305 100644 --- a/example/README.md +++ b/example/README.md @@ -53,7 +53,7 @@ python3 d4_cmd_driver.py --query_name gb1 --alignment_file example/gb1_1000_expe To make predictions for the variants `G1W` as well as `K42G,I24P` and get the predicted fitness score. ```sh -d4_predict.py --model_filepath result_files/saved_models/gb1None_10_01_2024_110517_end/ --protein_pdb example/gb1.pdb --alignment_file example/gb1_1000_experimental.clustal --query_name gb1 --variant_s G1W_K42G,I24P --wt_seq MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE --first_ind 0 +python3 d4_predict.py --model_filepath result_files/saved_models/gb1None_10_01_2024_110517_end/ --protein_pdb example/gb1.pdb --alignment_file example/gb1_1000_experimental.clustal --query_name gb1 --variant_s G1W_K42G,I24P --wt_seq MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE --first_ind 0 ``` If only positive scores should be shown, one can pipe the output through the following commands: