DESCRIPTION

Package: cpsr
Type: Package
Title: Cancer Predisposition Sequencing Reporter (CPSR)
Version: 2.1.2
Authors@R:
    c(person(given = "Sigve",
             family = "Nakken",
             role = c("aut", "cre"),
             email = "sigven@ifi.uio.no",
             comment = c(ORCID = "0000-0001-8468-2050")),
      person(given = "Peter",
             family = "Diakumis",
             role = c("aut","ctb"),
             email = "peterdiakumis@gmail.com",
             comment = c(ORCID = "0000-0002-7502-7545")))
Maintainer: Sigve Nakken <sigven@ifi.uio.no>, Peter Diakumis <peterdiakumis@gmail.com>
URL: https://github.com/sigven/cpsr,
    https://sigven.github.io/cpsr/
BugReports: https://github.com/sigven/cpsr/issues
Description: CPSR is a computational workflow that interprets germline variants identified from
             next-generation sequencing in the context of cancer predisposition. The workflow is
             integrated with the framework that underlies the Personal Cancer Genome Reporter
             (PCGR - https://github.com/sigven/pcgr). While PCGR is intended for reporting
             and analysis of somatic variants detected in a tumor, CPSR is intended for reporting
             and ranking of germline variants in protein-coding genes that are implicated in cancer
             predisposition and inherited cancer syndromes.
License: MIT + file LICENSE
biocViews:
Remotes: github::sigven/pcgr/pcgrr
Imports:
    assertable,
    assertthat,
    bslib,
    crosstalk,
    dplyr,
    DT,
    ggplot2,
    glue,
    htmltools,
    openxlsx2,
    pcgrr,
    quarto,
    readr,
    rlang,
    shiny,
    stringr,
    stringi,
    tidyr
Depends:
    R (>= 4.0)
Suggests:
    BSgenome.Hsapiens.UCSC.hg19,
    BSgenome.Hsapiens.UCSC.hg38,
    knitr,
    rmarkdown
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr