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Use the most recent WTS Library for generating a Subject RNAsum report #547

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victorskl opened this issue Feb 8, 2023 · 1 comment · Fixed by #573
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Use the most recent WTS Library for generating a Subject RNAsum report #547

victorskl opened this issue Feb 8, 2023 · 1 comment · Fixed by #573
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Release 2.1

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Context:

If there are more than one WTS library for given Subject, use the most recent WTS library's transcriptome output for RNAsum report workflow launching.

Umccrise:

  • Similarly,

If there are more than one umccrise output for a given Subject, use the most recent umccrise output for RNAsum.

Actions:

  • Implement the changes
@victorskl victorskl added this to the Release 2.1 milestone Feb 8, 2023
@victorskl victorskl self-assigned this Feb 23, 2023
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victorskl commented Mar 1, 2023 •
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Can not trigger SBJ02060 -- recurring, multiple WTS libraries

https://umccr.slack.com/archives/C025TLC7D/p1666569644595359

victorskl added a commit that referenced this issue Mar 6, 2023
@victorskl
Solved multiple WTS libraries by using latest to their sequencing time
8843551 
* Automation: RNAsum will be using latest WTS library by their sequencing time
* Extended case:
  if 2 tumors of same Subject in same SequenceRun
  natural sort desc library_id; pop top win

Fixes #547
@victorskl victorskl mentioned this issue Mar 6, 2023
Merged
victorskl added a commit to umccr/data-portal-client that referenced this issue Mar 13, 2023
@victorskl
Allowed RNAsum trigger on multiple transcriptome output
7fb215e 
* Pipeline automation will use "latest greatest" strategy
  i.e. it uses "recent" WTS library and its most recent
  transcriptome run output automatically
* Related #219
  umccr/data-portal-apis#547
@victorskl victorskl mentioned this issue Mar 13, 2023
Merged
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Solved multiple WTS libraries by using latest to their sequencing time umccr/data-portal-apis
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