From 7e7728fabe6a2b2f7d5ed0ba8a25213eb23082c2 Mon Sep 17 00:00:00 2001
From: Victor San Kho Lin <victor@sankholin.com>
Date: Thu, 9 Mar 2023 16:05:27 +1100
Subject: [PATCH] Updated tumor normal trigger pairing payload

* See upstream changes for somatic+germline input output changes
  https://github.com/umccr/data-portal-apis/pull/572
---
 src/api/pairing.ts                            |  9 ++--
 .../subjects/SubjectWGSTNLaunch/index.tsx     | 47 ++++++++++++++++---
 2 files changed, 47 insertions(+), 9 deletions(-)

diff --git a/src/api/pairing.ts b/src/api/pairing.ts
index 879cf90..d222dff 100644
--- a/src/api/pairing.ts
+++ b/src/api/pairing.ts
@@ -20,9 +20,12 @@ export type FastqRow = {
 
 export type FASTQPairingPayload = {
   subject_id: string;
-  sample_name: string;
-  output_file_prefix: string;
-  output_directory: string;
+  sample_name_germline: string;
+  sample_name_somatic: string;
+  output_file_prefix_germline: string;
+  output_file_prefix_somatic: string;
+  output_directory_germline: string;
+  output_directory_somatic: string;
   fastq_list_rows: FastqRow[];
   tumor_fastq_list_rows: FastqRow[];
 };
diff --git a/src/containers/subjects/SubjectWGSTNLaunch/index.tsx b/src/containers/subjects/SubjectWGSTNLaunch/index.tsx
index e452323..55f9aa1 100644
--- a/src/containers/subjects/SubjectWGSTNLaunch/index.tsx
+++ b/src/containers/subjects/SubjectWGSTNLaunch/index.tsx
@@ -201,19 +201,54 @@ export default function SubjectWGSTNLaunch({ subjectId }: Props) {
             <InputText className='w-full' type='text' disabled value={input.subject_id} />
           </div>
 
-          <h5>Sample Name (Tumor Library Id)</h5>
+          <h5>Somatic Sample Name (Tumor Library Id)</h5>
           <div className='w-full' style={{ cursor: 'not-allowed' }}>
-            <InputText className='w-full' type='text' disabled value={input.sample_name} />
+            <InputText className='w-full' type='text' disabled value={input.sample_name_somatic} />
           </div>
 
-          <h5>Output File Prefix (Tumor Sample Id)</h5>
+          <h5>Germline Sample Name (Normal Library Id)</h5>
           <div className='w-full' style={{ cursor: 'not-allowed' }}>
-            <InputText className='w-full' type='text' disabled value={input.output_file_prefix} />
+            <InputText className='w-full' type='text' disabled value={input.sample_name_germline} />
           </div>
 
-          <h5>Output Directory (tumorLibraryId_normalLibraryId)</h5>
+          <h5>Somatic Output File Prefix (Tumor Sample Id)</h5>
           <div className='w-full' style={{ cursor: 'not-allowed' }}>
-            <InputText className='w-full' type='text' disabled value={input.output_directory} />
+            <InputText
+              className='w-full'
+              type='text'
+              disabled
+              value={input.output_file_prefix_somatic}
+            />
+          </div>
+
+          <h5>Germline Output File Prefix (Normal Sample Id)</h5>
+          <div className='w-full' style={{ cursor: 'not-allowed' }}>
+            <InputText
+              className='w-full'
+              type='text'
+              disabled
+              value={input.output_file_prefix_germline}
+            />
+          </div>
+
+          <h5>Somatic Output Directory (tumorLibraryId_normalLibraryId)</h5>
+          <div className='w-full' style={{ cursor: 'not-allowed' }}>
+            <InputText
+              className='w-full'
+              type='text'
+              disabled
+              value={input.output_directory_somatic}
+            />
+          </div>
+
+          <h5>Germline Output Directory (Normal Library Id)</h5>
+          <div className='w-full' style={{ cursor: 'not-allowed' }}>
+            <InputText
+              className='w-full'
+              type='text'
+              disabled
+              value={input.output_directory_germline}
+            />
           </div>
 
           <div className='w-full mt-5 text-center'>