OnsetFormulas, Sequences, and Component Functions - v0.4.0 #104
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Co-authored-by: Benedikt Ehinger <[email protected]>
Co-authored-by: Benedikt Ehinger <[email protected]>
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| xlims!(0, 500) | ||
| current_figure() | ||
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| # As visible, the `R` response always follows the `S` response. Due to the "`_`" we have large breaks between the individual sequences. |
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| # As visible, the `R` response always follows the `S` response. Due to the "`_`" we have large breaks between the individual sequences. | |
| # As visible, the `R` response always follows the `S` response. Due to the "`_`" we have large breaks between the individual sequences. |
| axislegend(ax) | ||
| f | ||
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| # Voila - the inter-onset intervals are `20` samples longer for condition `B`, exactly as specified.` |
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| # Voila - the inter-onset intervals are `20` samples longer for condition `B`, exactly as specified.` | |
| # Voila - the inter-onset intervals are `20` samples longer for condition `B`, exactly as specified.` |
Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #104 +/- ##
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- Coverage 72.70% 61.86% -10.84%
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Files 10 11 +1
Lines 359 535 +176
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+ Hits 261 331 +70
- Misses 98 204 +106 ☔ View full report in Codecov by Sentry. |
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behinger
changed the title
| @@ -62,7 +67,8 @@ function basis_shiftduration(evts, maxlength) | |||
| end | |||
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| # ## Simulate data with the new component type | |||
| erp = UnfoldSim.simulate( | |||
| erp = UnfoldSim.simulate_component( | |||
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| @@ -40,7 +40,9 @@ design_single_shuffled = SingleSubjectDesign(; | |||
| :stimulus_type => ["natural", "artificial"], | |||
| :contrast_level => range(0, 1, length = 3), | |||
| ), | |||
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| event_order_function = shuffle, | ||
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| @@ -46,11 +46,15 @@ makedocs(; | |||
| "Overview: Noise types" => "./generated/reference/noisetypes.md", | |||
| ], | |||
| "HowTo" => [ | |||
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| "Get multiple trials with identical subject/item combinations" => "./generated/HowTo/repeatTrials.md", | ||
| "Define a new component (with variable duration and shift)" => "./generated/HowTo/newComponent.md", | ||
| "Generate multi channel data" => "./generated/HowTo/multichannel.md", | ||
| "Use existing experimental designs & onsets in the simulation" => "./generated/HowTo/predefinedData.md", | ||
| "Produce specific sequences of events" => "./generated/HowTo/sequence.md", | ||
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| SequenceDesign{T}(d, s, sl) where {T<:AbstractDesign} = | ||
| new(d, check_sequence(s), sl) |
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| SequenceDesign{T}(d, s, sl) where {T<:AbstractDesign} = | |
| new(d, check_sequence(s), sl) | |
| SequenceDesign{T}(d, s, sl) where {T<:AbstractDesign} = new(d, check_sequence(s), sl) |
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| SequenceDesign(design, sequence) = | ||
| SequenceDesign(design = design, sequence = sequence) |
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| SequenceDesign(design, sequence) = | |
| SequenceDesign(design = design, sequence = sequence) | |
| SequenceDesign(design, sequence) = SequenceDesign(design = design, sequence = sequence) |
| SequenceDesign(design, sequence) = | ||
| SequenceDesign(design = design, sequence = sequence) | ||
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| generate_events(rng,design::SequenceDesign{MultiSubjectDesign}) = error("not yet implemented") |
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| generate_events(rng,design::SequenceDesign{MultiSubjectDesign}) = error("not yet implemented") | |
| generate_events(rng, design::SequenceDesign{MultiSubjectDesign}) = | |
| error("not yet implemented") |
| function UnfoldSim.generate_events(rng::AbstractRNG, design::RepeatDesign) | ||
| df = map(x -> generate_events(rng, design.design), 1:design.repeat) |> x -> vcat(x...) | ||
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| # No way to find out what size it is without actually generating first... | ||
| Base.size( | ||
| design::Union{<:SequenceDesign,<:SubselectDesign,<:RepeatDesign{<:SequenceDesign}}, | ||
| ) = size(generate_events(design), 1) |
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| ) = size(generate_events(design), 1) | |
| ) = size(generate_events(design), 1) |
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New Features:
SequenceDesignwhich allows for fixed sequences e.g. Stimulus - Decision - Response, or Stim - Fix - Fix - Fix etc.@jschepers I think I added unittests for all new features + docstrings + tutorials
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