You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
iI run trimmomatic v0.39 for my paired end reads and I get this output:
TrimmomaticPE:
Started with arguments:
-threads 12 -phred33 SR22799322_1.fastq.gz SRR22799322_2. fastq.gz /home/projects/ossabaw/samples/SR413590_yaolei/trimmed/SRR22799322_TRIM_1P.fastq.gz /home/projects/ossabaw/samples/SR413590_yaolei/trimmed/SRR 22799322_TRIM_1U.fastq.gz /home/projects/ossabaw/samples/SR413590_yaolei/trimmed/SR22799322_TRIM_2P.fastq.gz /home/projects/ossabaw/samples/SR413590_yaolei/trimmed/SRR22799322_TRIM_2U.fastq.gz ILLUMINACLIP:/ho
me/projects/ossabaw/samples/SR413590_yaolei/adaptersPE.fa:2:30:10 MINLEN:50
Using PrefixPair:
" AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTA' and AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC'
ILLUMINACLIP: Using 1 prefix pairs, 0 forward/reverse sequences,
o forward only sequences, 0 reverse only sequences
Input Read Pairs: 68170396 Both Surviving: 68088438 (99.88%) Forward Only Surviving: 81958 (0.12%) Reverse Only Surviving: 0 (0.00%) Dropped: 0 (0.00%)
TrimmomaticE: Completed successfully
And I do not understand why I have forward only surviving reads. My initial files (before running trimmomatic) had the same number of sequences when checked with fastqc.
The text was updated successfully, but these errors were encountered:
iI run trimmomatic v0.39 for my paired end reads and I get this output:
TrimmomaticPE:
Started with arguments:
-threads 12 -phred33 SR22799322_1.fastq.gz SRR22799322_2. fastq.gz /home/projects/ossabaw/samples/SR413590_yaolei/trimmed/SRR22799322_TRIM_1P.fastq.gz /home/projects/ossabaw/samples/SR413590_yaolei/trimmed/SRR 22799322_TRIM_1U.fastq.gz /home/projects/ossabaw/samples/SR413590_yaolei/trimmed/SR22799322_TRIM_2P.fastq.gz /home/projects/ossabaw/samples/SR413590_yaolei/trimmed/SRR22799322_TRIM_2U.fastq.gz ILLUMINACLIP:/ho
me/projects/ossabaw/samples/SR413590_yaolei/adaptersPE.fa:2:30:10 MINLEN:50
Using PrefixPair:
" AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTA' and AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC'
ILLUMINACLIP: Using 1 prefix pairs, 0 forward/reverse sequences,
o forward only sequences, 0 reverse only sequences
Input Read Pairs: 68170396 Both Surviving: 68088438 (99.88%) Forward Only Surviving: 81958 (0.12%) Reverse Only Surviving: 0 (0.00%) Dropped: 0 (0.00%)
TrimmomaticE: Completed successfully
And I do not understand why I have forward only surviving reads. My initial files (before running trimmomatic) had the same number of sequences when checked with fastqc.
The text was updated successfully, but these errors were encountered: