diff --git a/templates/galaxy/config/tool_conf.xml.j2 b/templates/galaxy/config/tool_conf.xml.j2
index f50cc60ca..84f0d1ba8 100644
--- a/templates/galaxy/config/tool_conf.xml.j2
+++ b/templates/galaxy/config/tool_conf.xml.j2
@@ -247,14 +247,14 @@
     <tool file="/opt/galaxy/custom-tools/test/p_clip_peaks/p_clip_peaks.xml" />
   </section>
   <section id="epigenetics" name="Epigenetics">
-    <tool file="/opt/galaxy/custom-tools/dna_methylation/calling.xml" />
-    <tool file="/opt/galaxy/custom-tools/dna_methylation/destrand.xml" />
-    <tool file="/opt/galaxy/custom-tools/dna_methylation/dmr.xml" />
-    <tool file="/opt/galaxy/custom-tools/dna_methylation/filter.xml" />
-    <tool file="/opt/galaxy/custom-tools/dna_methylation/plot.xml" />
-    <tool file="/opt/galaxy/custom-tools/dna_methylation/tiling.xml" />
-    <tool file="/opt/galaxy/custom-tools/dna_methylation/smooth.xml" />
-    <tool file="/opt/galaxy/custom-tools/dna_methylation/correlation_matrix.xml" />
+    <!--tool file="/opt/galaxy/custom-tools/dna_methylation/calling.xml" /-->
+    <!--tool file="/opt/galaxy/custom-tools/dna_methylation/destrand.xml" /-->
+    <!--tool file="/opt/galaxy/custom-tools/dna_methylation/dmr.xml" /-->
+    <!--tool file="/opt/galaxy/custom-tools/dna_methylation/filter.xml" /-->
+    <!--tool file="/opt/galaxy/custom-tools/dna_methylation/plot.xml" /-->
+    <!--tool file="/opt/galaxy/custom-tools/dna_methylation/tiling.xml" /-->
+    <!--tool file="/opt/galaxy/custom-tools/dna_methylation/smooth.xml" /-->
+    <!--tool file="/opt/galaxy/custom-tools/dna_methylation/correlation_matrix.xml" /-->
   </section>
   <section id="phylogenetics" name="Phylogenetics" >
   </section>