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Is this interfacing the new g:profiler? #8

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LuckyMD opened this issue Jun 5, 2019 · 3 comments
Open

Is this interfacing the new g:profiler? #8

LuckyMD opened this issue Jun 5, 2019 · 3 comments

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@LuckyMD
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LuckyMD commented Jun 5, 2019 •
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Hi!

A couple of months ago @liiskolb mentioned in a scanpy issue that g:profiler was getting/has a new interface. I was wondering if python-gprofiler interfaces with that or is still querying the old version?

Thanks!
@liiskolb
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liiskolb commented Jun 5, 2019

@LuckyMD Based on the code it seems that this package is using the old version.
We have a new API, etc. We have kept the archived version alive so everything works, but the annotation data (GO, KEGG, etc) is not up-to-date.

@LuckyMD
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LuckyMD commented Jun 6, 2019 •
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@liiskolb Do you have a python API for the new g:profiler?

@liiskolb
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liiskolb commented Jun 6, 2019

@LuckyMD Yes, we have updated gprofiler-official to version 1.0.0 that corresponds to the new API.
See the descriptions here: https://pypi.org/project/gprofiler-official/#description

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@LuckyMD @liiskolb