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Gimmemotif motif scan 'score' metric #316

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momur opened this issue May 2, 2024 · 0 comments
Open

Gimmemotif motif scan 'score' metric #316

momur opened this issue May 2, 2024 · 0 comments

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@momur
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momur commented May 2, 2024

Hello dev team,

Thanks for the tool. I am running gimmemotif scan. I would like to know how the 'score' is calculated?
At first I thought each motif has a score. I looked at specific motif_ids and in the following ss, we have three different motifs (summation of motifs in factors_direct and factors_indirect) and four scores.
Screenshot 2024-05-02 at 1 22 11 PM

In here, we have one motif TF in the factors_indirect but we have two scores associated with it. How should we interpret the results?
Screenshot 2024-05-02 at 1 40 43 PM

Thanks!

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