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Error producing final output #322

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johannesnicolaus opened this issue Jan 22, 2025 · 0 comments
Open

Error producing final output #322

johannesnicolaus opened this issue Jan 22, 2025 · 0 comments

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@johannesnicolaus
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Describe the bug
I was trying to run the following command:

gimme motifs regions.bed \
    outdir\
    -g genome.fa \
    -f 0.5 \
    -N 100 \
    --size 0

but I got errors where the final statistics and report was not produced. The file gimme.motifs.redundant.html was empty.

To Reproduce
I'm not completely sure how to reproduce it, as it never worked for me from the start.

Expected behavior
I think it should be outputting the final report.

Error logs

  warnings.warn(
Traceback (most recent call last):
  File "/home/n/nicolaus-johannes/miniconda3/envs/ananse/bin/gimme", line 12, in <module>
    cli(sys.argv[1:])
  File "/home/n/nicolaus-johannes/miniconda3/envs/ananse/lib/python3.10/site-packages/gimmemotifs/cli.py", line 755, in cli
    args.func(args)
  File "/home/n/nicolaus-johannes/miniconda3/envs/ananse/lib/python3.10/site-packages/gimmemotifs/commands/motifs.py", line 273, in motifs
    roc_html_report(
  File "/home/n/nicolaus-johannes/miniconda3/envs/ananse/lib/python3.10/site-packages/gimmemotifs/report.py", line 1048, in roc_html_report
    .render()
AttributeError: 'ExtraStyler' object has no attribute 'render'. Did you mean: '_render'?

Installation information (please complete the following information):

  • OS: Linux
  • Installation: conda
  • Version: 0.18.0
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