| title | description | published | date | tags | editor | dateCreated |
|---|---|---|---|---|---|---|
Microreact |
Open data visualization and sharing for genomic epidemiology |
true |
2020-09-11 15:31:58 UTC |
genomics, data visualization, 2016 |
markdown |
2020-05-26 16:39:52 UTC |
Microreact is a web application for the easy visualization of datasets consisting of any combination of trees, geographical, temporal and associated metadata. Data files can be uploaded to Microreact directly via the web browser or by linking to their location (e.g. from Google Drive/Dropbox or via API), and an integrated visualization via trees, maps, timelines and tables provides interactive querying of the data. The visualization can be shared as a permanent web link among collaborators, or embedded within publications to enable readers to explore and download the data.
Microreact can act as an end point for any tool or bioinformatic pipeline that ultimately generates a tree, and provides a simple, yet powerful, visualization method that will aid research and discovery and the open sharing of datasets. {.is-info}
- Microreact Main Page {.links-list}
- Can browse previous published data or input your own.
- Read instruction before use.
- Must know how to make a tree before use.
- Require a table file with ids, and other info you want to input (localization, etc) in csv or tsv format.
- Optionally input a tree and/or a dot file.
- Use of the result view is explained in detail in the Video Tutoriel.
- Argimón, S., Abudahab, K., Goater, R. J., Fedosejev, A., Bhai, J., Glasner, C., ... & Spratt, B. G. (2016). Microreact: visualizing and sharing data for genomic epidemiology and phylogeography. Microbial genomics, 2(11). {.grid-list}