From a00a7c830f71c31b35043d53cddc3e9e0ccf9878 Mon Sep 17 00:00:00 2001 From: Niema Moshiri Date: Mon, 13 Nov 2023 11:27:36 -0800 Subject: [PATCH] Fix OpenMP issue with GCC 8.5 --- Dockerfile | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index 6fea2ab..1b05e8f 100644 --- a/Dockerfile +++ b/Dockerfile @@ -3,4 +3,6 @@ FROM oraclelinux:8 # Set up environment and install dependencies RUN yum -y check-update ; yum -y update && \ - yum install -y cmake gcc-c++ git make + yum install -y cmake gcc-c++ git make && \ + sed -i 's/shared(currently_defined_clusters, try_cluster, sequence_lengths, current_sequence, current_clusters, firstSequenceLength, min_overlap)/shared(currently_defined_clusters, try_cluster, sequence_lengths, current_sequence, current_clusters)/g' src/read_reducer.cpp && \ + sed -i 's/shared(my_distance_estimate,nodeParents,workingNodes,distanceEstimates, step_penalty, min_overlap, resolutionOption, firstSequenceLength, theSequence, left_to_do)/shared(my_distance_estimate,nodeParents,workingNodes,distanceEstimates)/g' src/ShortestPathTN93.cpp && \