diff --git a/dist.js b/dist.js
index 63253be..14f5b2e 100644
--- a/dist.js
+++ b/dist.js
@@ -3,11 +3,11 @@ var compressor = require('node-minify');
 compressor.minify({
   compressor: 'gcc',
   input: 'js/phyd3.*.js',
-  output: 'js/phyd3.min.js'
+  output: '/tmp/phyd3.min.js'
 }).then(function(min) {
     compressor.minify({
       compressor: 'no-compress',
-      input: 'js/*.min.js',
+      input: ['js/*.min.js', '/tmp/phyd3.min.js'],
       output: 'dist/js/phyd3.min.js'
     });
 });
diff --git a/dist/index.html b/dist/index.html
index 360363a..32f493d 100644
--- a/dist/index.html
+++ b/dist/index.html
@@ -35,7 +35,7 @@
             showNodesType: "only leaf",
             showPhylogram: false,
             showTaxonomy: true,
-            showFullTaxonomy: true,
+            showFullTaxonomy: false,
             showSequences: true,
             showTaxonomyColors: true,
             backgroundColor: "#f5f5f5",
diff --git a/dist/js/phyd3.min.js b/dist/js/phyd3.min.js
index 91e1670..9547d60 100644
--- a/dist/js/phyd3.min.js
+++ b/dist/js/phyd3.min.js
@@ -1,3 +1,96 @@
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+$jscomp.initSymbol=function(){$jscomp.initSymbol=function(){};$jscomp.global.Symbol||($jscomp.global.Symbol=$jscomp.Symbol)};$jscomp.symbolCounter_=0;$jscomp.Symbol=function(b){return $jscomp.SYMBOL_PREFIX+(b||"")+$jscomp.symbolCounter_++};
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\ No newline at end of file
diff --git a/documentation.html b/documentation.html
old mode 100755
new mode 100644
index 040df44..cd06ae4
--- a/documentation.html
+++ b/documentation.html
@@ -65,7 +65,7 @@ <h3><a class="no-decoration" name="extended+phyloXML">Extended phyloXML</a></h3>
             You can specify the taxonomy name, color and URL in the &lt;taxonomies&gt; section of extended phyloXML.<br />
             These information will be displayed on the tree, in node infobox as well as used for taxonomy colorization.<br />
             The taxonomy codes must match ones used in phylogeny. Use HEX values for colors (0xRRGGBB). Use full URL for links (starting with http://).<br />
-            See the example below.
+            See the code below and also <a href="http://10.10.10.10/lkreft/phyd3/view.php?id=taxonomy.xml&f=xml">working example</a>.
         <pre>
 &lt;phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://www.phyloxml.org"
           xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd"&gt;
@@ -93,7 +93,7 @@ <h3><a class="no-decoration" name="extended+phyloXML">Extended phyloXML</a></h3>
             You can specify domain description, color and URL in the &lt;domains&gt; section of extended phyloXML.<br />
             These information will be displayed on the tree, in node infobox as well as used for domain colorization.<br />
             The domain codes must match ones used in phylogeny. Use HEX values for colors (0xRRGGBB). Use full URL for links (starting with http://).<br />
-            See the example below.
+            See the code below and also <a href="http://10.10.10.10/lkreft/phyd3/view.php?id=domains.xml&f=xml">working example</a>.
         <pre>
 &lt;phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://www.phyloxml.org"
           xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd"&gt;
@@ -130,7 +130,7 @@ <h3><a class="no-decoration" name="extended+phyloXML">Extended phyloXML</a></h3>
             It is possible to display on the tree additional node labels. Those labels can be created from existing node properties or other tags. <br />
             There are two kinds of labels: text labels and color labels.<br />
             To specify which properties to show use &lt;labels&gt; section in extended phyloXML. Type can be either text or color. Data tag and ref must match the intended clade property to be displayed. Use HEX values for colors (0xRRGGBB).<br />
-            See the example below.
+            See the code below and also <a href="http://10.10.10.10/lkreft/phyd3/view.php?id=labels.xml&f=xml">working example</a>.
         <pre>
 &lt;phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://www.phyloxml.org"
           xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd"&gt;
@@ -167,7 +167,7 @@ <h3><a class="no-decoration" name="extended+phyloXML">Extended phyloXML</a></h3>
             <li><b>legend</b> - for each value series of your data, you need to specify the legend field; for each field you need to put field name (which will be displayed to the user in legend and infobox popup), color that will be used to draw this series (for all graph types besides heatmap) and for binary graph also a symbol shape (one of circle); additionally for heatmap you need to specify which gradient spec to use (name &amp; classes following the <a href="http://colorbrewer2.org/" target="_blank">ColorBrewer2</a>)
             <li><b>data</b> - for each clade id you wish to display the graph for, you need to include data values, ordered in series defined in legend; you can also use existing tags or properties from phylogeny tree, referencing them by tag and ref attributes of data tag; to turn single values into pie charts use <b>min</b> and <b>max</b> tags inside <b>data</b> tag.
         </ol>
-        See the example below.
+        See the code below and also working examples of <a href="http://10.10.10.10/lkreft/phyd3/view.php?id=outergraphs.xml&f=xml">leaf node graphs</a> or <a href="http://10.10.10.10/lkreft/phyd3/view.php?id=innergraphs.xml&f=xml">inner node graphs</a>.
         <pre>
 &lt;phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://www.phyloxml.org"
           xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd"&gt;
diff --git a/fetch.php b/fetch.php
old mode 100755
new mode 100644
diff --git a/img/BITS.png b/img/BITS.png
old mode 100755
new mode 100644
diff --git a/index.html b/index.html
old mode 100755
new mode 100644
diff --git a/js/phyd3.min.js b/js/phyd3.min.js
deleted file mode 100644
index 9bdebae..0000000
--- a/js/phyd3.min.js
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--1*a.scaleStep;requestAnimFrame(N)});d3.select("#domains").on("click",function(){a.showDomains=!a.showDomains;a.showDomains?(d3.select("#domainNames").attr("disabled",null),d3.select("#domainColors").attr("disabled",null),d3.select("#domainWidthLower").attr("disabled",null),d3.select("#domainWidthHigher").attr("disabled",null),d3.select("#domainLevelLower").attr("disabled",null),d3.select("#domainLevelHigher").attr("disabled",null)):(d3.select("#domainNames").attr("disabled","disabled"),d3.select("#domainColors").attr("disabled",
-"disabled"),d3.select("#domainWidthLower").attr("disabled","disabled"),d3.select("#domainWidthHigher").attr("disabled","disabled"),d3.select("#domainLevelLower").attr("disabled","disabled"),d3.select("#domainLevelHigher").attr("disabled","disabled"));m();h()});d3.select("#domainColors").on("click",function(){a.showDomainColors=!a.showDomainColors;w()});d3.select("#domainNames").on("click",function(){a.showDomainNames=!a.showDomainNames;h()});d3.select("#domainWidthLower").on("click",function(){a.domainWidth-=
-a.domainWidthStep;a.domainWidth<a.domainWidthStep&&(a.domainWidth=a.domainWidthStep);F=phyd3.phylogram.scaledomainWidths(A,a.domainWidth);C()});d3.select("#domainWidthHigher").on("click",function(){a.domainWidth+=a.domainWidthStep;F=phyd3.phylogram.scaledomainWidths(A,a.domainWidth);C()});d3.select("#domainLevelLower").on("click",function(){a.domainLevel/=a.domainLevelStep;t()});d3.select("#domainLevelHigher").on("click",function(){a.domainLevel*=a.domainLevelStep;t()});d3.select("#graphLegend").on("click",
-function(){a.showGraphLegend=!a.showGraphLegend;a.marginY=a.margin+(a.showGraphs?O:0);J();S()});d3.select("#graphs").on("click",function(){a.showGraphs=!a.showGraphs;a.showGraphs?(d3.select("#graphLegend").attr("disabled",null),d3.select("#graphWidthLower").attr("disabled",null),d3.select("#graphWidthHigher").attr("disabled",null)):(d3.select("#graphLegend").attr("disabled","disabled"),d3.select("#graphWidthLower").attr("disabled","disabled"),d3.select("#graphWidthHigher").attr("disabled","disabled"));
-ha()});d3.select("#graphWidthLower").on("click",function(){a.graphWidth-=a.graphWidthStep;a.graphWidth<a.graphWidthStep&&(a.graphWidth=a.graphWidthStep);z()});d3.select("#graphWidthHigher").on("click",function(){a.graphWidth+=a.graphWidthStep;z()});d3.select("#linkSVG").on("click",function(){var a=g();saveAs(new Blob([unescape(encodeURIComponent(a))],{type:"application/svg+xml"}),"phylogram.svg")});d3.select("#linkPNG").on("click",function(){var a=g(),b=document.createElement("canvas");canvg(b,a);
-b.toBlob(function(a){saveAs(a,"phylogram.png")})})}})();
-(function(){"undefined"==typeof phyd3&&(phyd3={});phyd3.phyloxml={};phyd3.phyloxml.cid=0;phyd3.phyloxml.parseConfidence=function(b){return{type:b.getAttribute("type"),stddev:parseFloat(b.getAttribute("stddev")),value:parseFloat(b.textContent)}};phyd3.phyloxml.parseProperty=function(b){return{ref:b.getAttribute("ref"),unit:b.getAttribute("unit"),datatype:b.getAttribute("datatype"),appliesTo:b.getAttribute("applies_to"),idRef:b.getAttribute("id_ref"),value:b.textContent}};phyd3.phyloxml.parseUri=function(b){return{desc:b.getAttribute("desc"),
-type:b.getAttribute("type"),value:b.textContent}};phyd3.phyloxml.parseReference=function(b){return{doi:b.getAttribute("doi"),desc:b.getElementsByTagName("desc")[0]?b.getElementsByTagName("desc")[0].textContent:""}};phyd3.phyloxml.parseAccession=function(b){return{source:b.getAttribute("source"),comment:b.getAttribute("comment"),value:b.textContent}};phyd3.phyloxml.parseMolSeq=function(b){return{isAligned:b.getAttribute("is_aligned"),value:b.textContent}};phyd3.phyloxml.parseColor=function(b){var d=
-b.getElementsByTagName("red")[0],d=d?parseInt(d.textContent):0,a=b.getElementsByTagName("greeen")[0],a=a?parseInt(a.textContent):0,e=b.getElementsByTagName("blue")[0],e=e?parseInt(e.textContent):0;b=(b=b.getElementsByTagName("alpha")[0])?parseInt(b.textContent):255;return"rgba("+d+","+a+","+e+", "+parseFloat(b/255)+")"};phyd3.phyloxml.parseDomainArchitecture=function(b){var d={sequenceLength:parseInt(b.getAttribute("length")),domains:[]};b=b.getElementsByTagName("domain");for(var a=0;a<b.length;a++){var e=
-b[a];d.domains.push({confidence:parseFloat(e.getAttribute("confidence")),from:parseInt(e.getAttribute("from")),to:parseInt(e.getAttribute("to")),id:e.getAttribute("id"),name:e.textContent})}return d};phyd3.phyloxml.parseCrossReference=function(b){var d=[];b=b.getElementsByTagName("accession");for(var a=0;a<b.length;a++)d.push(phyd3.phyloxml.parseAccession(b[a]));return d};phyd3.phyloxml.parseEvents=function(b){for(var d={},a=0;a<b.childNodes.length;a++){var e=b.childNodes[a];switch(e.nodeName){case "type":d.type=
-e.textContent;break;case "duplications":case "speciations":case "losses":d[e.nodeName]=parseInt(e.textContent);break;case "confidence":d.confidence=phyd3.phyloxml.parseConfidence(e);break;case "#text":case "#comment":break;default:console.log("Undefined tag: "+e.nodeName+" "+e.textContent+" - skipping...")}}return d};phyd3.phyloxml.parseTaxonomy=function(b){for(var d={uris:[],synonyms:[]},a=0;a<b.childNodes.length;a++){var e=b.childNodes[a];switch(e.nodeName){case "id":case "code":case "authority":case "rank":d[e.nodeName]=
-e.textContent;break;case "scientific_name":d.scientificName=e.textContent;break;case "common_name":d.commonName=e.textContent;break;case "synonym":d.synonyms.push(e.textContent);case "uri":d.uris.push(phyd3.phyloxml.parseUri(e));break;case "#text":case "#comment":break;default:console.log("Undefined tag: "+e.nodeName+" "+e.textContent+" - skipping...")}}return d};phyd3.phyloxml.parseAnnotation=function(b){for(var d={ref:b.getAttribute("ref"),source:b.getAttribute("source"),evidence:b.getAttribute("evidence"),
-type:b.getAttribute("type"),properties:[],uris:[]},a=0;a<b.childNodes.length;a++){var e=b.childNodes[a];switch(e.nodeName){case "desc":d.desc=e.textContent;break;case "confidence":d.confidence=phyd3.phyloxml.parseConfidence(e);break;case "property":d.properties.push(phyd3.phyloxml.parseProperty(e));break;case "uri":d.uris.push(phyd3.phyloxml.parseUri(e));break;case "#text":case "#comment":break;default:console.log("Undefined tag: "+e.nodeName+" "+e.textContent+" - skipping...")}}return d};phyd3.phyloxml.parseSequence=
-function(b){for(var d={type:b.getAttribute("type"),idSource:b.getAttribute("id_source"),idRef:b.getAttribute("id_ref"),uris:[],annotations:[]},a=0;a<b.childNodes.length;a++){var e=b.childNodes[a];switch(e.nodeName){case "symbol":case "name":case "location":d[e.nodeName]=e.textContent;break;case "gene_name":d.geneName=e.textContent;break;case "accession":d.accession=phyd3.phyloxml.parseAccession(e);break;case "cross_reference":d.crossReference=phyd3.phyloxml.parseCrossReference(e);break;case "mol_seq":d.molSeq=
-phyd3.phyloxml.parseMolSeq(e);break;case "annotation":d.annotations.push(phyd3.phyloxml.parseAnnotation(e));break;case "uri":d.uris.push(phyd3.phyloxml.parseUri(e));break;case "domain_architecture":d.domainArchitecture=phyd3.phyloxml.parseDomainArchitecture(e);break;case "#text":case "#comment":break;default:console.log("Undefined tag: "+e.nodeName+" "+e.textContent+" - skipping...")}}return d};phyd3.phyloxml.parseClade=function(b){for(var d={branchset:[],properties:[],taxonomies:[],sequences:[],
-confidences:[],references:[],branchLength:parseFloat(b.getAttribute("branch_length"))},a=0;a<b.childNodes.length;a++){var e=b.childNodes[a];switch(e.nodeName){case "branch_length":d.branchLength=parseFloat(e.textContent);break;case "width":d.width=parseFloat(e.textContent);break;case "clade":d.branchset.push(phyd3.phyloxml.parseClade(e));break;case "property":d.properties.push(phyd3.phyloxml.parseProperty(e));break;case "taxonomy":d.taxonomies.push(phyd3.phyloxml.parseTaxonomy(e));break;case "reference":d.references.push(phyd3.phyloxml.parseReference(e));
-break;case "confidence":d.confidences.push(phyd3.phyloxml.parseConfidence(e));break;case "sequence":d.sequences.push(phyd3.phyloxml.parseSequence(e));break;case "color":d.color=phyd3.phyloxml.parseColor(e);break;case "events":d.events=phyd3.phyloxml.parseEvents(e);break;case "id":case "name":d[e.nodeName]=e.textContent;break;case "#text":case "#comment":break;default:console.log("Undefined tag: "+e.nodeName+" "+e.textContent+" - skipping...")}}d.id||(phyd3.phyloxml.cid++,d.id="_"+phyd3.phyloxml.cid);
-return d};phyd3.phyloxml.parseLegend=function(b){for(var d={show:parseInt(b.getAttribute("show")),fields:[],gradient:{}},a=b.getElementsByTagName("field"),e=0;e<a.length;e++){var g=a[e],m=g.getElementsByTagName("name")[0],m=m?m.textContent:"",h=g.getElementsByTagName("color")[0],h=h?h.textContent:"",t=g.getElementsByTagName("background")[0],t=t?t.textContent:"",w=g.getElementsByTagName("shape")[0],w=w?w.textContent:"",g=(g=g.getElementsByTagName("url")[0])?g.textContent:"";d.fields.push({name:m,color:h,
-background:t,shape:w,url:g})}if(b=b.getElementsByTagName("gradient")[0])m=(m=b.getElementsByTagName("name")[0])?m.textContent:"",b=(b=b.getElementsByTagName("classes")[0])?parseInt(b.textContent):0,d.gradient={name:m,classes:b};return d};phyd3.phyloxml.parseData=function(b){var d={tag:b.getAttribute("tag"),ref:b.getAttribute("ref")},a=b.getElementsByTagName("min")[0];d.min=a?a.textContent:void 0;a=b.getElementsByTagName("max")[0];d.max=a?a.textContent:void 0;b=b.getElementsByTagName("values");for(a=
-0;a<b.length;a++){var e=b[a].getAttribute("for"),g=b[a].getElementsByTagName("value");d[e]=[];for(var m=0;m<g.length;m++)d[e].push(parseFloat(g[m].textContent))}return d};phyd3.phyloxml.parseGraph=function(b){for(var d={name:"",legend:{},data:{},type:b.getAttribute("type")},a=0;a<b.childNodes.length;a++){var e=b.childNodes[a];switch(e.nodeName){case "name":d.name=e.textContent;break;case "legend":d.legend=phyd3.phyloxml.parseLegend(e);break;case "data":d.data=phyd3.phyloxml.parseData(e);break;case "#text":case "#comment":break;
-default:console.log("Undefined tag: "+e.nodeName+" "+e.textContent+" - skipping...")}}return d};phyd3.phyloxml.parseLabel=function(b){for(var d={name:"",data:{},type:b.getAttribute("type")},a=0;a<b.childNodes.length;a++){var e=b.childNodes[a];switch(e.nodeName){case "name":d.name=e.textContent;break;case "data":d.data=phyd3.phyloxml.parseData(e);break;case "#text":case "#comment":break;default:console.log("Undefined tag: "+e.nodeName+" "+e.textContent+" - skipping...")}}return d};phyd3.phyloxml.parse=
-function(b){var d={branchset:[],properties:[],confidence:[]},a=b.getElementsByTagName("phylogeny"),a=a[0];d.rooted=a.getAttribute("rooted");d.rerootable=a.getAttribute("rerootable");d.branch_length_unit=a.getAttribute("branch_length_unit");d.type=a.getAttribute("type");if(a&&a.childNodes)for(var e=0;e<a.childNodes.length;e++){var g=a.childNodes[e];switch(g.nodeName){case "clade":d.branchset.push(phyd3.phyloxml.parseClade(g));break;case "confidence":d.confidence.push(phyd3.phyloxml.parseConfidence(g));
-break;case "date":d.date=g.textContent;break;case "description":d.description=g.textContent;break;case "id":d.id=g.textContent;break;case "name":d.name=g.textContent;break;case "property":d.properties.push(phyd3.phyloxml.parseProperty(g));break;case "#text":case "#comment":break;default:console.log("Undefined tag: "+g.nodeName+" "+g.textContent+" - skipping...")}}var a=b.getElementsByTagName("taxonomies"),a=a[0],m={};if(a&&a.childNodes)for(e=0;e<a.childNodes.length;e++){var h=a.childNodes[e];if("color"==
-h.nodeName){var g=h.getElementsByTagName("code")[0].textContent,t=h.getElementsByTagName("value")[0].textContent;m[g]={color:t}}if("taxonomy"==h.nodeName){var g=h.getAttribute("code"),t=(t=h.getElementsByTagName("color")[0])?t.textContent:t,w=h.getElementsByTagName("name")[0],w=w?w.textContent:w,h=(h=h.getElementsByTagName("url")[0])?h.textContent:h;m[g]={color:t,name:w,url:h}}}d.taxcolors=m;a=b.getElementsByTagName("domains");a=a[0];m={};if(a&&a.childNodes)for(e=0;e<a.childNodes.length;e++)h=a.childNodes[e],
-"color"==h.nodeName&&(g=h.getElementsByTagName("code")[0].textContent,t=h.getElementsByTagName("value")[0].textContent,m[g]={color:t}),"domain"==h.nodeName&&(g=h.getAttribute("name"),t=(t=h.getElementsByTagName("color")[0])?t.textContent:t,w=(w=h.getElementsByTagName("description")[0])?w.textContent:w,h=(h=h.getElementsByTagName("url")[0])?h.textContent:h,m[g]={color:t,description:w,url:h});d.domcolors=m;a=b.getElementsByTagName("graphs");a=a[0];g=[];if(a&&a.childNodes)for(e=0;e<a.childNodes.length;e++)t=
-a.childNodes[e],"graph"==t.nodeName&&g.push(phyd3.phyloxml.parseGraph(t));d.graphs=g;a=b.getElementsByTagName("labels");a=a[0];b=[];if(a&&a.childNodes)for(e=0;e<a.childNodes.length;e++)g=a.childNodes[e],"label"==g.nodeName&&b.push(phyd3.phyloxml.parseLabel(g));d.labels=b;return d}})();
\ No newline at end of file
diff --git a/js/phyd3.phylogram.js b/js/phyd3.phylogram.js
old mode 100755
new mode 100644
index 082d0b8..75492f4
--- a/js/phyd3.phylogram.js
+++ b/js/phyd3.phylogram.js
@@ -190,33 +190,34 @@ window.requestAnimFrame = (function(){
         options.supportValuesColor = options.supportValuesColor || "blue";
         options.showNodesType = options.showNodesType || 'only leaf';
         options.treeWidth = options.treeWidth || 'auto';
-        options.showFullTaxonomy = options.showFullTaxonomy || false;
-        options.showLabels = options.showLabels || true;
-        options.showDomains = options.showDomains || true;        
-        options.dynamicHide = options.dynamicHide || false;
-        options.invertColors = options.invertColors || false;
-        options.lineupNodes = options.lineupNodes || true;
-        options.showSupportValues = options.showSupportValues || false;
-        options.showLengthValues = options.showLengthValues || false;
-        options.showTaxonomy = options.showTaxonomy || true;
-        options.showTaxonomyColors = options.showTaxonomyColors || true;
-        options.showDomainNames = options.showDomainNames || false;
-        options.showDomainColors = options.showDomainColors || true;
-        options.showGraphs = options.showGraphs || true;
-        options.showGraphLegend = options.showGraphLegend || true;
-        options.showNodeNames = options.showNodeNames || true;
-        options.showPhylogram = options.showPhylogram || false;
+        options.showFullTaxonomy = ('showFullTaxonomy' in options) ? options.showFullTaxonomy : false;
+        options.showLabels = ('showLabels' in options) ? options.showLabels : true;
+        options.showDomains = ('showDomains' in options) ? options.showDomains : true;        
+        options.dynamicHide = ('dynamicHide' in options) ? options.dynamicHide : false;
+        options.invertColors = ('invertColors' in options) ? options.invertColors : false;
+        options.lineupNodes = ('lineupNodes' in options) ? options.lineupNodes : true;
+        options.showSupportValues = ('showSupportValues' in options) ? options.showSupportValues : false;
+        options.showLengthValues = ('showLengthValues' in options) ? options.showLengthValues : false;
+        options.showTaxonomy = ('showTaxonomy' in options) ? options.showTaxonomy : true;
+        options.showTaxonomyColors = ('showTaxonomyColors' in options) ? options.showTaxonomyColors : true;
+        options.showDomainNames = ('showDomainNames' in options) ? options.showDomainNames : false;
+        options.showDomainColors = ('showDomainColors' in options) ? options.showDomainColors : true;
+        options.showGraphs = ('showGraps' in options) ? options.showGraphs : true;
+        options.showGraphLegend = ('showGraphLegend' in options) ? options.showGraphLegend : true;
+        options.showNodeNames = ('showNodeNames' in options) ? options.showNodeNames : true;
+        options.showPhylogram = ('showPhylogram' in options) ? options.showPhylogram : false;
 
         // nodes object, domain scale, last drawn leaf, leaves padding for displaying graphs and text
         var nodes, domainScale, lastLabel, multibarScaling = [], labelPadding = 100, textPadding = 100, graphPadding = 0, legendPadding = 100, longestNode = 0;
 
         // margins
         var showLegend = false;
-        if (onodes.graphs)
-        for (var i=0; i < onodes.graphs.length; i++) {
-            if (onodes.graphs[i].legend.show != 0) {
-                showLegend = true;
-                break;
+        if (onodes.graphs) {
+            for (var i=0; i < onodes.graphs.length; i++) {
+                if (onodes.graphs[i].legend.show != 0) {
+                    showLegend = true;
+                    break;
+                }
             }
         }
         legendPadding = showLegend ? legendPadding : 0;
@@ -826,7 +827,6 @@ window.requestAnimFrame = (function(){
 
         function renderPopup(n) {
             var evt = d3.event;
-            if (evt.defaultPrevented) return;
             var x = evt.layerX;
                 y = evt.layerY;
             var popupId = "popup"+parseInt(Date.now() * Math.random() * 1000);
@@ -872,7 +872,7 @@ window.requestAnimFrame = (function(){
                     row.append("td").text("Taxononomy");
                     var tax = row.append("td");
                     if (onodes.taxcolors[t.code] && onodes.taxcolors[t.code].url) {
-                        tax = tax.append("a").attr("href", onodes.taxcolors[t.code].url);
+                        tax = tax.append("a").attr("href", onodes.taxcolors[t.code].url).attr("target", "_blank");
                     }
                     var text = "";
                     text += onodes.taxcolors[t.code] && onodes.taxcolors[t.code].name ? onodes.taxcolors[t.code].name+" " : '';
@@ -943,7 +943,7 @@ window.requestAnimFrame = (function(){
                                 .text(" ");
                             var name = row.append("td");
                             if (onodes.domcolors[d.name] && onodes.domcolors[d.name].url) {
-                                name = name.append("a").attr("href", onodes.domcolors[d.name].url);
+                                name = name.append("a").attr("href", onodes.domcolors[d.name].url).attr("target", "_blank");
                             }
                             name.text(d.name);
                             row.append("td").text(onodes.domcolors[d.name] ? onodes.domcolors[d.name].description : '');
@@ -980,7 +980,7 @@ window.requestAnimFrame = (function(){
                             var row = table.append("tr");
                             var name = row.append("td");
                             if (graph.legend.fields[i].url) {
-                                name = name.append("a").attr("href", graph.legend.fields[i].url);
+                                name = name.append("a").attr("href", graph.legend.fields[i].url).attr("target", "_blank");
                             }
                             name.text(graph.legend.fields[i].name);
                             row.append("td").text(graph.data[n.id][i]);
@@ -1168,6 +1168,7 @@ window.requestAnimFrame = (function(){
 
         function toggleLabels() {            
             if (options.showLabels && onodes.labels) {
+                console.log(onodes.labels);
                 for ( var l = 0; l < onodes.labels.length; l++) {
                     var label = onodes.labels[l];
                     if (!label.id) label.id = parseInt(Date.now() * Math.random() * 1000);
@@ -1194,7 +1195,7 @@ window.requestAnimFrame = (function(){
                     switch (label.type) {
                         case "text":
                             for (cid in label.data) {
-                                if (!label.data[cid] || !parseInt(cid)) continue;
+                                if (!label.data[cid]) continue;
                                 vis.selectAll(".cid_"+cid)
                                     .append("text")
                                     .attr("class", "nodelabel text lid"+label.id)
@@ -1212,7 +1213,7 @@ window.requestAnimFrame = (function(){
                             break;
                         case "color":
                             for (cid in label.data) {
-                                if (!label.data[cid] || !parseInt(cid)) continue;
+                                if (!label.data[cid]) continue;
                                 var h = options.nodeHeight;
                                 var c = label.data[cid].replace(/0x/,"#");
                                 vis.selectAll(".cid_"+cid)
@@ -1504,10 +1505,11 @@ window.requestAnimFrame = (function(){
         function applyGraphTransform() {
             var h = options.nodeHeight;
             var padding = textPadding + labelPadding;
-            var graphs = leaves.selectAll("g.graph")
+            leaves.selectAll("g.graph")
                 .attr("transform", function(d) {
                     return "translate(" + (options.lineupNodes ? (phyd3.phylogram.dx - d.y + padding) : padding) + "," + 0 + ")";
                 });
+            var graphs = vis.selectAll("g.graph");
             d3.select("#graphWidth").attr("value", options.graphWidth);
             vis.selectAll("text.legend").remove();
             graphPadding = 0;
diff --git a/libs/css/bootstrap-colorpicker.min.css b/libs/css/bootstrap-colorpicker.min.css
old mode 100755
new mode 100644
diff --git a/libs/css/vib.css b/libs/css/vib.css
old mode 100755
new mode 100644
diff --git a/samples/91162629d258a876ee994e9233b2ad87 b/samples/91162629d258a876ee994e9233b2ad87
deleted file mode 100644
index 16e703c..0000000
--- a/samples/91162629d258a876ee994e9233b2ad87
+++ /dev/null
@@ -1,7791 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<phyloxml xmlns="http://www.phyloxml.org" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.00/phyloxml.xsd">
-   <phylogeny rooted="true" id="HOM03D000802">
-      <clade>
-         <clade>
-            <branch_length>0.04881499999999998</branch_length>
-            <confidence type="bootstrap">90.0</confidence>
-            <clade>
-               <branch_length>0.10658</branch_length>
-               <confidence type="bootstrap">93.0</confidence>
-               <clade>
-                  <branch_length>0.22805</branch_length>
-                  <confidence type="bootstrap">100.0</confidence>
-                  <clade>
-                     <branch_length>0.04594</branch_length>
-                     <confidence type="bootstrap">86.0</confidence>
-                     <clade>
-                        <branch_length>0.02216</branch_length>
-                        <confidence type="bootstrap">70.0</confidence>
-                        <clade>
-                           <branch_length>0.03152</branch_length>
-                           <confidence type="bootstrap">11.0</confidence>
-                           <clade>
-                              <branch_length>0.14823</branch_length>
-                              <confidence type="bootstrap">97.0</confidence>
-                              <clade>
-                                 <branch_length>0.0067</branch_length>
-                                 <confidence type="bootstrap">44.0</confidence>
-                                 <clade>
-                                    <name>MD00G318760</name>
-                                    <property ref="See also" applies_to="clade" datatype="xsd:anyURI">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Arabidopsis+thaliana</property>
-                                    <property ref="Info" applies_to="clade" datatype="xsd:string">Some more information displayed in popup</property>
-                                    <branch_length>0.02216</branch_length>
-                                    <taxonomy>
-                                       <code>mdo</code>
-                                    </taxonomy>
-                                    <sequence>
-                                       <domain_architecture length="402">
-                                          <domain confidence="3.7E-6" from="135" to="212">IPR011992</domain>
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-               <value>12</value>
-            </values>
-            <values for="180">
-               <value>47</value>
-               <value>41</value>
-               <value>83</value>
-            </values>
-            <values for="184">
-               <value>36</value>
-               <value>57</value>
-               <value>61</value>
-            </values>
-            <values for="185">
-               <value>3</value>
-               <value>11</value>
-               <value>94</value>
-            </values>
-            <values for="189">
-               <value>31</value>
-               <value>71</value>
-               <value>99</value>
-            </values>
-            <values for="190">
-               <value>75</value>
-               <value>58</value>
-               <value>26</value>
-            </values>
-            <values for="191">
-               <value>41</value>
-               <value>92</value>
-               <value>33</value>
-            </values>
-            <values for="192">
-               <value>66</value>
-               <value>51</value>
-               <value>22</value>
-            </values>
-            <values for="193">
-               <value>66</value>
-               <value>18</value>
-               <value>36</value>
-            </values>
-            <values for="194">
-               <value>57</value>
-               <value>77</value>
-               <value>26</value>
-            </values>
-            <values for="196">
-               <value>60</value>
-               <value>75</value>
-               <value>90</value>
-            </values>
-            <values for="197">
-               <value>6</value>
-               <value>21</value>
-               <value>30</value>
-            </values>
-            <values for="202">
-               <value>31</value>
-               <value>7</value>
-               <value>47</value>
-            </values>
-            <values for="203">
-               <value>5</value>
-               <value>7</value>
-               <value>44</value>
-            </values>
-            <values for="209">
-               <value>44</value>
-               <value>63</value>
-               <value>42</value>
-            </values>
-            <values for="210">
-               <value>84</value>
-               <value>96</value>
-               <value>17</value>
-            </values>
-            <values for="213">
-               <value>5</value>
-               <value>0</value>
-               <value>5</value>
-            </values>
-            <values for="214">
-               <value>62</value>
-               <value>10</value>
-               <value>72</value>
-            </values>
-            <values for="216">
-               <value>45</value>
-               <value>80</value>
-               <value>51</value>
-            </values>
-            <values for="217">
-               <value>53</value>
-               <value>68</value>
-               <value>17</value>
-            </values>
-            <values for="223">
-               <value>87</value>
-               <value>16</value>
-               <value>94</value>
-            </values>
-            <values for="224">
-               <value>98</value>
-               <value>27</value>
-               <value>83</value>
-            </values>
-            <values for="225">
-               <value>23</value>
-               <value>82</value>
-               <value>21</value>
-            </values>
-            <values for="226">
-               <value>88</value>
-               <value>85</value>
-               <value>79</value>
-            </values>
-            <values for="231">
-               <value>80</value>
-               <value>31</value>
-               <value>68</value>
-            </values>
-            <values for="232">
-               <value>11</value>
-               <value>72</value>
-               <value>53</value>
-            </values>
-            <values for="235">
-               <value>66</value>
-               <value>44</value>
-               <value>56</value>
-            </values>
-            <values for="236">
-               <value>45</value>
-               <value>23</value>
-               <value>67</value>
-            </values>
-            <values for="237">
-               <value>28</value>
-               <value>25</value>
-               <value>19</value>
-            </values>
-            <values for="238">
-               <value>89</value>
-               <value>3</value>
-               <value>30</value>
-            </values>
-            <values for="239">
-               <value>30</value>
-               <value>47</value>
-               <value>4</value>
-            </values>
-            <values for="243">
-               <value>32</value>
-               <value>49</value>
-               <value>42</value>
-            </values>
-            <values for="244">
-               <value>32</value>
-               <value>71</value>
-               <value>74</value>
-            </values>
-            <values for="247">
-               <value>44</value>
-               <value>70</value>
-               <value>25</value>
-            </values>
-            <values for="248">
-               <value>33</value>
-               <value>16</value>
-               <value>63</value>
-            </values>
-            <values for="249">
-               <value>68</value>
-               <value>77</value>
-               <value>73</value>
-            </values>
-            <values for="253">
-               <value>62</value>
-               <value>22</value>
-               <value>51</value>
-            </values>
-            <values for="254">
-               <value>8</value>
-               <value>2</value>
-               <value>47</value>
-            </values>
-            <values for="255">
-               <value>11</value>
-               <value>14</value>
-               <value>89</value>
-            </values>
-            <values for="257">
-               <value>13</value>
-               <value>84</value>
-               <value>75</value>
-            </values>
-            <values for="258">
-               <value>38</value>
-               <value>34</value>
-               <value>82</value>
-            </values>
-            <values for="264">
-               <value>19</value>
-               <value>70</value>
-               <value>53</value>
-            </values>
-            <values for="265">
-               <value>48</value>
-               <value>59</value>
-               <value>49</value>
-            </values>
-            <values for="266">
-               <value>36</value>
-               <value>28</value>
-               <value>77</value>
-            </values>
-            <values for="267">
-               <value>66</value>
-               <value>72</value>
-               <value>84</value>
-            </values>
-            <values for="271">
-               <value>47</value>
-               <value>43</value>
-               <value>41</value>
-            </values>
-            <values for="272">
-               <value>38</value>
-               <value>19</value>
-               <value>41</value>
-            </values>
-            <values for="273">
-               <value>57</value>
-               <value>1</value>
-               <value>86</value>
-            </values>
-            <values for="276">
-               <value>50</value>
-               <value>76</value>
-               <value>64</value>
-            </values>
-            <values for="277">
-               <value>93</value>
-               <value>31</value>
-               <value>90</value>
-            </values>
-            <values for="278">
-               <value>41</value>
-               <value>25</value>
-               <value>61</value>
-            </values>
-            <values for="281">
-               <value>51</value>
-               <value>74</value>
-               <value>2</value>
-            </values>
-            <values for="282">
-               <value>58</value>
-               <value>22</value>
-               <value>8</value>
-            </values>
-            <values for="284">
-               <value>62</value>
-               <value>25</value>
-               <value>99</value>
-            </values>
-            <values for="285">
-               <value>39</value>
-               <value>77</value>
-               <value>60</value>
-            </values>
-            <values for="288">
-               <value>25</value>
-               <value>71</value>
-               <value>35</value>
-            </values>
-            <values for="289">
-               <value>19</value>
-               <value>92</value>
-               <value>45</value>
-            </values>
-            <values for="290">
-               <value>97</value>
-               <value>77</value>
-               <value>95</value>
-            </values>
-            <values for="295">
-               <value>33</value>
-               <value>86</value>
-               <value>60</value>
-            </values>
-            <values for="296">
-               <value>5</value>
-               <value>70</value>
-               <value>25</value>
-            </values>
-            <values for="297">
-               <value>94</value>
-               <value>46</value>
-               <value>72</value>
-            </values>
-            <values for="301">
-               <value>49</value>
-               <value>45</value>
-               <value>61</value>
-            </values>
-            <values for="302">
-               <value>2</value>
-               <value>99</value>
-               <value>94</value>
-            </values>
-            <values for="303">
-               <value>28</value>
-               <value>6</value>
-               <value>39</value>
-            </values>
-            <values for="304">
-               <value>87</value>
-               <value>51</value>
-               <value>36</value>
-            </values>
-            <values for="310">
-               <value>77</value>
-               <value>63</value>
-               <value>86</value>
-            </values>
-            <values for="311">
-               <value>76</value>
-               <value>26</value>
-               <value>48</value>
-            </values>
-            <values for="312">
-               <value>85</value>
-               <value>0</value>
-               <value>64</value>
-            </values>
-            <values for="315">
-               <value>78</value>
-               <value>98</value>
-               <value>90</value>
-            </values>
-            <values for="316">
-               <value>44</value>
-               <value>14</value>
-               <value>13</value>
-            </values>
-            <values for="317">
-               <value>59</value>
-               <value>40</value>
-               <value>90</value>
-            </values>
-            <values for="320">
-               <value>25</value>
-               <value>79</value>
-               <value>79</value>
-            </values>
-            <values for="321">
-               <value>74</value>
-               <value>62</value>
-               <value>72</value>
-            </values>
-            <values for="324">
-               <value>5</value>
-               <value>63</value>
-               <value>60</value>
-            </values>
-            <values for="325">
-               <value>12</value>
-               <value>9</value>
-               <value>80</value>
-            </values>
-            <values for="326">
-               <value>46</value>
-               <value>89</value>
-               <value>52</value>
-            </values>
-            <values for="329">
-               <value>50</value>
-               <value>44</value>
-               <value>4</value>
-            </values>
-            <values for="330">
-               <value>89</value>
-               <value>92</value>
-               <value>40</value>
-            </values>
-            <values for="331">
-               <value>44</value>
-               <value>30</value>
-               <value>11</value>
-            </values>
-            <values for="332">
-               <value>41</value>
-               <value>37</value>
-               <value>22</value>
-            </values>
-         </data>
-      </graph>
-      <graph type="heatmap">
-         <name>Heatmap test graph with fields</name>
-         <legend show="1">
-            <field>
-               <name>heat1</name>
-            </field>
-            <field>
-               <name>heat2</name>
-            </field>
-            <field>
-               <name>heat3</name>
-            </field>
-            <field>
-               <name>heat4</name>
-            </field>
-            <field>
-               <name>heat5</name>
-            </field>
-            <field>
-               <name>heat6</name>
-            </field>
-            <field>
-               <name>heat7</name>
-            </field>
-            <field>
-               <name>heat8</name>
-            </field>
-            <field>
-               <name>heat9</name>
-            </field>
-            <gradient>
-               <name>YlOrRd</name>
-               <classes>9</classes>
-            </gradient>
-         </legend>
-         <data>
-            <values for="10">
-               <value>64</value>
-               <value>38</value>
-               <value>84</value>
-               <value>9</value>
-               <value>74</value>
-               <value>33</value>
-               <value>82</value>
-               <value>37</value>
-               <value>12</value>
-            </values>
-            <values for="11">
-               <value>6</value>
-               <value>0</value>
-               <value>95</value>
-               <value>74</value>
-               <value>62</value>
-               <value>47</value>
-               <value>1</value>
-               <value>48</value>
-               <value>53</value>
-            </values>
-            <values for="13">
-               <value>16</value>
-               <value>63</value>
-               <value>92</value>
-               <value>35</value>
-               <value>72</value>
-               <value>24</value>
-               <value>20</value>
-               <value>7</value>
-               <value>71</value>
-            </values>
-            <values for="14">
-               <value>85</value>
-               <value>56</value>
-               <value>23</value>
-               <value>91</value>
-               <value>8</value>
-               <value>96</value>
-               <value>32</value>
-               <value>30</value>
-               <value>65</value>
-            </values>
-            <values for="16">
-               <value>53</value>
-               <value>64</value>
-               <value>30</value>
-               <value>39</value>
-               <value>10</value>
-               <value>9</value>
-               <value>92</value>
-               <value>59</value>
-               <value>42</value>
-            </values>
-            <values for="17">
-               <value>29</value>
-               <value>86</value>
-               <value>0</value>
-               <value>0</value>
-               <value>99</value>
-               <value>67</value>
-               <value>89</value>
-               <value>92</value>
-               <value>40</value>
-            </values>
-            <values for="22">
-               <value>71</value>
-               <value>89</value>
-               <value>7</value>
-               <value>31</value>
-               <value>26</value>
-               <value>51</value>
-               <value>74</value>
-               <value>90</value>
-               <value>25</value>
-            </values>
-            <values for="23">
-               <value>46</value>
-               <value>6</value>
-               <value>13</value>
-               <value>40</value>
-               <value>6</value>
-               <value>84</value>
-               <value>97</value>
-               <value>66</value>
-               <value>50</value>
-            </values>
-            <values for="24">
-               <value>6</value>
-               <value>52</value>
-               <value>22</value>
-               <value>22</value>
-               <value>72</value>
-               <value>89</value>
-               <value>60</value>
-               <value>71</value>
-               <value>11</value>
-            </values>
-            <values for="26">
-               <value>91</value>
-               <value>94</value>
-               <value>27</value>
-               <value>58</value>
-               <value>72</value>
-               <value>25</value>
-               <value>80</value>
-               <value>72</value>
-               <value>89</value>
-            </values>
-            <values for="27">
-               <value>5</value>
-               <value>90</value>
-               <value>70</value>
-               <value>11</value>
-               <value>25</value>
-               <value>28</value>
-               <value>10</value>
-               <value>32</value>
-               <value>65</value>
-            </values>
-            <values for="28">
-               <value>12</value>
-               <value>61</value>
-               <value>74</value>
-               <value>74</value>
-               <value>51</value>
-               <value>40</value>
-               <value>12</value>
-               <value>49</value>
-               <value>20</value>
-            </values>
-            <values for="31">
-               <value>89</value>
-               <value>31</value>
-               <value>68</value>
-               <value>64</value>
-               <value>78</value>
-               <value>43</value>
-               <value>16</value>
-               <value>40</value>
-               <value>19</value>
-            </values>
-            <values for="32">
-               <value>80</value>
-               <value>38</value>
-               <value>23</value>
-               <value>26</value>
-               <value>82</value>
-               <value>58</value>
-               <value>78</value>
-               <value>77</value>
-               <value>2</value>
-            </values>
-            <values for="36">
-               <value>87</value>
-               <value>51</value>
-               <value>36</value>
-               <value>96</value>
-               <value>64</value>
-               <value>83</value>
-               <value>90</value>
-               <value>15</value>
-               <value>94</value>
-            </values>
-            <values for="37">
-               <value>35</value>
-               <value>5</value>
-               <value>53</value>
-               <value>66</value>
-               <value>54</value>
-               <value>83</value>
-               <value>60</value>
-               <value>17</value>
-               <value>16</value>
-            </values>
-            <values for="38">
-               <value>31</value>
-               <value>91</value>
-               <value>65</value>
-               <value>18</value>
-               <value>75</value>
-               <value>95</value>
-               <value>10</value>
-               <value>12</value>
-               <value>83</value>
-            </values>
-            <values for="39">
-               <value>72</value>
-               <value>85</value>
-               <value>11</value>
-               <value>12</value>
-               <value>31</value>
-               <value>81</value>
-               <value>91</value>
-               <value>60</value>
-               <value>99</value>
-            </values>
-            <values for="45">
-               <value>58</value>
-               <value>61</value>
-               <value>83</value>
-               <value>62</value>
-               <value>85</value>
-               <value>45</value>
-               <value>85</value>
-               <value>76</value>
-               <value>52</value>
-            </values>
-            <values for="46">
-               <value>65</value>
-               <value>85</value>
-               <value>79</value>
-               <value>52</value>
-               <value>21</value>
-               <value>32</value>
-               <value>30</value>
-               <value>39</value>
-               <value>51</value>
-            </values>
-            <values for="47">
-               <value>3</value>
-               <value>97</value>
-               <value>64</value>
-               <value>42</value>
-               <value>66</value>
-               <value>45</value>
-               <value>4</value>
-               <value>10</value>
-               <value>22</value>
-            </values>
-            <values for="50">
-               <value>27</value>
-               <value>74</value>
-               <value>99</value>
-               <value>13</value>
-               <value>54</value>
-               <value>51</value>
-               <value>91</value>
-               <value>1</value>
-               <value>24</value>
-            </values>
-            <values for="51">
-               <value>48</value>
-               <value>30</value>
-               <value>77</value>
-               <value>38</value>
-               <value>96</value>
-               <value>41</value>
-               <value>43</value>
-               <value>8</value>
-               <value>45</value>
-            </values>
-            <values for="52">
-               <value>0</value>
-               <value>38</value>
-               <value>95</value>
-               <value>35</value>
-               <value>14</value>
-               <value>24</value>
-               <value>19</value>
-               <value>45</value>
-               <value>22</value>
-            </values>
-            <values for="54">
-               <value>87</value>
-               <value>50</value>
-               <value>3</value>
-               <value>84</value>
-               <value>98</value>
-               <value>48</value>
-               <value>57</value>
-               <value>22</value>
-               <value>66</value>
-            </values>
-            <values for="55">
-               <value>15</value>
-               <value>33</value>
-               <value>25</value>
-               <value>2</value>
-               <value>68</value>
-               <value>99</value>
-               <value>40</value>
-               <value>76</value>
-               <value>91</value>
-            </values>
-            <values for="58">
-               <value>3</value>
-               <value>13</value>
-               <value>73</value>
-               <value>64</value>
-               <value>23</value>
-               <value>97</value>
-               <value>38</value>
-               <value>6</value>
-               <value>87</value>
-            </values>
-            <values for="59">
-               <value>51</value>
-               <value>36</value>
-               <value>60</value>
-               <value>27</value>
-               <value>31</value>
-               <value>66</value>
-               <value>25</value>
-               <value>77</value>
-               <value>94</value>
-            </values>
-            <values for="61">
-               <value>20</value>
-               <value>6</value>
-               <value>29</value>
-               <value>84</value>
-               <value>55</value>
-               <value>19</value>
-               <value>28</value>
-               <value>85</value>
-               <value>55</value>
-            </values>
-            <values for="62">
-               <value>20</value>
-               <value>9</value>
-               <value>39</value>
-               <value>6</value>
-               <value>18</value>
-               <value>16</value>
-               <value>74</value>
-               <value>97</value>
-               <value>92</value>
-            </values>
-            <values for="67">
-               <value>18</value>
-               <value>41</value>
-               <value>75</value>
-               <value>9</value>
-               <value>98</value>
-               <value>65</value>
-               <value>27</value>
-               <value>41</value>
-               <value>76</value>
-            </values>
-            <values for="68">
-               <value>37</value>
-               <value>65</value>
-               <value>12</value>
-               <value>67</value>
-               <value>59</value>
-               <value>65</value>
-               <value>9</value>
-               <value>85</value>
-               <value>92</value>
-            </values>
-            <values for="70">
-               <value>92</value>
-               <value>47</value>
-               <value>29</value>
-               <value>99</value>
-               <value>96</value>
-               <value>25</value>
-               <value>51</value>
-               <value>55</value>
-               <value>61</value>
-            </values>
-            <values for="71">
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diff --git a/samples/annotation.txt b/samples/annotation.txt
deleted file mode 100755
index 7e5234f..0000000
--- a/samples/annotation.txt
+++ /dev/null
@@ -1,8 +0,0 @@
-raccoon 80 61 1130 74 99 73 0 0 38 67 68 88 99 39 1172 1973 1279
-bear 18 81 1222 9 46 74 0 1 44 67 83 53 99 95 1821 1344 1078
-sea_lion 66 89 1616 38 22 50 1 -1 11 15 29 94 75 26 1255 1813 1094
-seal 9 97 1761 99 74 72 0 1 15 12 78 18 26 68 1935 1162 1069
-monkey 25 15 1583 85 45 29 0 1 100 72 48 17 43 59 1688 1081 1340
-cat 14 26 1618 74 39 56 0 0 15 49 62 24 76 23 1951 1640 1196
-weasel 78 78 1375 34 16 1 -1 1 90 46 39 13 77 45 1845 1746 1936
-dog 35 81 1854 76 72 80 -1 1 87 91 80 15 20 55 1761 1461 1700
diff --git a/samples/clean.xml b/samples/clean.xml
deleted file mode 100755
index 7d8b73c..0000000
--- a/samples/clean.xml
+++ /dev/null
@@ -1,497 +0,0 @@
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diff --git a/samples/events.xml b/samples/events.xml
deleted file mode 100644
index 0f9a1f6..0000000
--- a/samples/events.xml
+++ /dev/null
@@ -1,3002 +0,0 @@
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-      <confidence type="unknown">92.0</confidence>
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-            <confidence type="unknown">93.0</confidence>
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-                              <taxonomy><code>bra</code></taxonomy></clade>
-                            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.2</property></clade>
-                          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
-                        <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
-                        <clade>
-                          <name>CL06G03020</name>
-                          <branch_length>0.1351</branch_length>
-                          <taxonomy>
-                            <code>CL</code>
-                          </taxonomy>
-                        <taxonomy><code>cla</code></taxonomy></clade>
-                      <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
-                    </clade>
-                  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
-                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.087</property></clade>
-                <clade>
-                  <name>n278</name>
-                  <branch_length>0.1548</branch_length>
-                  <confidence type="unknown">96.0</confidence>
-                  <taxonomy>
-                    <code>AT</code>
-                  </taxonomy>
-                  <events>
-                    <duplications>1</duplications>
-                  </events>
-                  <clade>
-                    <name>ATR_00234G00020</name>
-                    <branch_length>0.14457</branch_length>
-                    <taxonomy>
-                      <code>AT</code>
-                    </taxonomy>
-                  <taxonomy><code>atr</code></taxonomy></clade>
-                  <clade>
-                    <name>ATR_00234G00010</name>
-                    <branch_length>0.14108</branch_length>
-                    <taxonomy>
-                      <code>AT</code>
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-                  <taxonomy><code>atr</code></taxonomy></clade>
-                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
-              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.0417</property></clade>
-            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.5769</property></clade>
-            <clade>
-              <name>BV9G08800</name>
-              <branch_length>0.30399</branch_length>
-              <taxonomy>
-                <code>BV</code>
-              </taxonomy>
-            <taxonomy><code>bvu</code></taxonomy></clade>
-          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.037</property></clade>
-          <clade>
-            <name>n323</name>
-            <branch_length>0.04379</branch_length>
-            <confidence type="unknown">85.0</confidence>
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-              <code>Rosids1</code>
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-            <events>
-              <duplications>1</duplications>
-            </events>
-            <clade>
-              <name>n295</name>
-              <branch_length>0.03959</branch_length>
-              <confidence type="unknown">52.0</confidence>
-              <taxonomy>
-                <code>Rosids1</code>
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-              <events>
-                <duplications>1</duplications>
-              </events>
-              <clade>
-                <name>n287</name>
-                <branch_length>0.04794</branch_length>
-                <confidence type="unknown">85.0</confidence>
-                <taxonomy>
-                  <code>Rosids1</code>
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-                <events>
-                  <speciations>1</speciations>
-                </events>
-                <clade>
-                  <name>n285</name>
-                  <branch_length>0.06039</branch_length>
-                  <confidence type="unknown">88.0</confidence>
-                  <taxonomy>
-                    <code>PT</code>
-                  </taxonomy>
-                  <events>
-                    <duplications>1</duplications>
-                  </events>
-                  <clade>
-                    <name>PT19G12060</name>
-                    <branch_length>0.05542</branch_length>
-                    <taxonomy>
-                      <code>PT</code>
-                    </taxonomy>
-                  <taxonomy><code>ptr</code></taxonomy></clade>
-                  <clade>
-                    <name>PT13G15100</name>
-                    <branch_length>0.03164</branch_length>
-                    <taxonomy>
-                      <code>PT</code>
-                    </taxonomy>
-                  <taxonomy><code>ptr</code></taxonomy></clade>
-                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property></clade>
-                <clade>
-                  <name>CS02115G00010</name>
-                  <branch_length>0.11722</branch_length>
-                  <taxonomy>
-                    <code>CS</code>
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-                <taxonomy><code>csi</code></taxonomy></clade>
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-              <clade>
-                <name>n294</name>
-                <branch_length>0.0405</branch_length>
-                <confidence type="unknown">71.0</confidence>
-                <taxonomy>
-                  <code>Malvids</code>
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-                <events>
-                  <speciations>1</speciations>
-                </events>
-                <clade>
-                  <name>n292</name>
-                  <branch_length>0.02542</branch_length>
-                  <confidence type="unknown">71.0</confidence>
-                  <taxonomy>
-                    <code>ND_Malvids1</code>
-                  </taxonomy>
-                  <events>
-                    <speciations>1</speciations>
-                  </events>
-                  <clade>
-                    <name>n290</name>
-                    <branch_length>0.06883</branch_length>
-                    <confidence type="unknown">95.0</confidence>
-                    <taxonomy>
-                      <code>GR</code>
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-                    <events>
-                      <duplications>1</duplications>
-                    </events>
-                    <clade>
-                      <name>GR13G07260</name>
-                      <branch_length>0.13449</branch_length>
-                      <taxonomy>
-                        <code>GR</code>
-                      </taxonomy>
-                    <taxonomy><code>gra</code></taxonomy></clade>
-                    <clade>
-                      <name>GR08G15070</name>
-                      <branch_length>0.08687</branch_length>
-                      <taxonomy>
-                        <code>GR</code>
-                      </taxonomy>
-                    <taxonomy><code>gra</code></taxonomy></clade>
-                  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property></clade>
-                  <clade>
-                    <name>CP00034G00500</name>
-                    <branch_length>0.09926</branch_length>
-                    <taxonomy>
-                      <code>CP</code>
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-                  <taxonomy><code>cpa</code></taxonomy></clade>
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-                <clade>
-                  <name>EG0011G07390</name>
-                  <branch_length>0.20972</branch_length>
-                  <taxonomy>
-                    <code>EG</code>
-                  </taxonomy>
-                <taxonomy><code>egr</code></taxonomy></clade>
-              </clade>
-            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
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-              <name>n322</name>
-              <branch_length>0.02603</branch_length>
-              <confidence type="unknown">77.0</confidence>
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-                <code>Fabids</code>
-              </taxonomy>
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-                <duplications>1</duplications>
-              </events>
-              <clade>
-                <name>n316</name>
-                <branch_length>0.04024</branch_length>
-                <confidence type="unknown">83.0</confidence>
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-                </taxonomy>
-                <events>
-                  <speciations>1</speciations>
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-                  <name>n306</name>
-                  <branch_length>0.06319</branch_length>
-                  <confidence type="unknown">94.0</confidence>
-                  <taxonomy>
-                    <code>Papilionoideae</code>
-                  </taxonomy>
-                  <events>
-                    <duplications>1</duplications>
-                  </events>
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-                    <name>n300</name>
-                    <branch_length>0.05249</branch_length>
-                    <confidence type="unknown">93.0</confidence>
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-                    <events>
-                      <speciations>1</speciations>
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-                      <name>n298</name>
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-                      <confidence type="unknown">99.0</confidence>
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-                        <name>GM12G32420</name>
-                        <branch_length>0.00917</branch_length>
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-                        <taxonomy>
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-                      <duplications>1</duplications>
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-                      <name>n303</name>
-                      <branch_length>0.02125</branch_length>
-                      <confidence type="unknown">74.0</confidence>
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-                        <taxonomy>
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-                      <clade>
-                        <name>MT1G052885</name>
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-                      <name>LJ3G041130</name>
-                      <branch_length>0.1032</branch_length>
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-                  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
-                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.6667</property></clade>
-                <clade>
-                  <name>n315</name>
-                  <branch_length>0.02337</branch_length>
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-                  <taxonomy>
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-                  <events>
-                    <speciations>1</speciations>
-                  </events>
-                  <clade>
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-                    <branch_length>0.06951</branch_length>
-                    <confidence type="unknown">96.0</confidence>
-                    <taxonomy>
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-                    <events>
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-                    <clade>
-                      <name>FV3G04370</name>
-                      <branch_length>5.5E-4</branch_length>
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-                        <code>FV</code>
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-                    <name>n314</name>
-                    <branch_length>0.04691</branch_length>
-                    <confidence type="unknown">86.0</confidence>
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-                    <events>
-                      <speciations>1</speciations>
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-                      <name>n312</name>
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-                      <confidence type="unknown">76.0</confidence>
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-                      <events>
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-                      <name>PPE_003G20430</name>
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-                  <branch_length>0.06474</branch_length>
-                  <confidence type="unknown">87.0</confidence>
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-          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
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-      <clade>
-        <name>n330</name>
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-          <code>Angiosperms</code>
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-        <events>
-          <speciations>1</speciations>
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-        <clade>
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-          <confidence type="unknown">99.0</confidence>
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-            <code>Monocots</code>
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-            <speciations>1</speciations>
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-          <clade>
-            <name>ZM01G32260</name>
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-              <code>ZM</code>
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-          <taxonomy>
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-      </clade>
-    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.1111</property></clade>
-  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.7241</property></clade>
-</phylogeny>
-<graphs>
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-        <field>
-           <name>confidence</name>
-           <color>0xFF0000</color>
-        </field>         
-     </legend>
-     <data tag="confidence">
-        <min>0</min>
-        <max>100</max>
-     </data>
-  </graph>
-</graphs>
-</phyloxml>
\ No newline at end of file
diff --git a/samples/logo.xml b/samples/logo.xml
deleted file mode 100644
index ccdb012..0000000
--- a/samples/logo.xml
+++ /dev/null
@@ -1,5091 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<phyloxml xmlns="http://www.phyloxml.org" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.00/phyloxml.xsd">
-   <phylogeny rooted="true" id="HOM03D000802">
-   <clade>
-      <branch_length>0.06203</branch_length>
-      <confidence type="bootstrap">89.0</confidence>
-      <clade>
-         <branch_length>5.5E-4</branch_length>
-         <confidence type="bootstrap">76.0</confidence>
-         <clade>
-            <branch_length>0.00723</branch_length>
-            <confidence type="bootstrap">73.0</confidence>
-            <clade>
-               <branch_length>0.03469</branch_length>
-               <confidence type="bootstrap">88.0</confidence>
-               <clade>
-                  <name>BV1G04700</name><!--here-->
-                  <branch_length>0.13638</branch_length>
-                  <taxonomy>
-                     <code>bvu</code>
-                  </taxonomy>
-                  <sequence>
-                     <domain_architecture length="124">
-                        <domain confidence="9.548" from="66" to="101">IPR002048</domain>
-                        <domain confidence="9.4E-9" from="14" to="97">IPR011992</domain>
-                     </domain_architecture>
-                  </sequence>
-                  <id>147</id>
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-               <clade>
-                  <name>CP02176G00020</name>
-                  <branch_length>0.06558</branch_length>
-                  <taxonomy>
-                     <code>cpa</code>
-                  </taxonomy>
-                  <sequence>
-                     <domain_architecture length="127">
-                        <domain confidence="5.2E-10" from="17" to="100">IPR011992</domain>
-                        <domain confidence="9.994" from="69" to="104">IPR002048</domain>
-                     </domain_architecture>
-                  </sequence>
-                  <id>148</id>
-               </clade>
-               <id>146</id>
-            </clade>
-            <clade>
-               <branch_length>0.02642</branch_length>
-               <confidence type="bootstrap">81.0</confidence>
-               <clade>
-                  <branch_length>0.04143</branch_length>
-                  <confidence type="bootstrap">78.0</confidence>
-                  <clade>
-                     <name>MD07G013420</name>
-                     <branch_length>0.02442</branch_length>
-                     <taxonomy>
-                        <code>mdo</code>
-                     </taxonomy>
-                     <sequence>
-                        <domain_architecture length="129">
-                           <domain confidence="2.3E-9" from="17" to="100">IPR011992</domain>
-                           <domain confidence="10.273" from="69" to="104">IPR002048</domain>
-                        </domain_architecture>
-                     </sequence>
-                     <id>151</id>
-                  </clade>
-                  <clade>
-                     <name>FV7G04970</name>
-                     <branch_length>0.01582</branch_length>
-                     <taxonomy>
-                        <code>fve</code>
-                     </taxonomy>
-                     <sequence>
-                        <domain_architecture length="227">
-                           <domain confidence="2.2E-12" from="10" to="102">IPR004910</domain>
-                           <domain confidence="10.273" from="171" to="206">IPR002048</domain>
-                           <domain confidence="3.4E-9" from="119" to="202">IPR011992</domain>
-                        </domain_architecture>
-                     </sequence>
-                     <id>152</id>
-                  </clade>
-                  <id>150</id>
-               </clade>
-               <clade>
-                  <branch_length>0.02852</branch_length>
-                  <confidence type="bootstrap">46.0</confidence>
-                  <clade>
-                     <name>TC0001G33590</name>
-                     <branch_length>0.04457</branch_length>
-                     <taxonomy>
-                        <code>tca</code>
-                     </taxonomy>
-                     <sequence>
-                        <domain_architecture length="127">
-                           <domain confidence="9.66" from="69" to="104">IPR002048</domain>
-                           <domain confidence="4.2E-10" from="17" to="100">IPR011992</domain>
-                        </domain_architecture>
-                     </sequence>
-                     <id>154</id>
-                  </clade>
-                  <clade>
-                     <name>GR08G12710</name>
-                     <branch_length>0.09337</branch_length>
-                     <taxonomy>
-                        <code>gra</code>
-                     </taxonomy>
-                     <sequence>
-                        <domain_architecture length="124">
-                           <domain confidence="7.3E-11" from="13" to="96">IPR011992</domain>
-                           <domain confidence="10.19" from="65" to="100">IPR002048</domain>
-                        </domain_architecture>
-                     </sequence>
-                     <id>155</id>
-                  </clade>
-                  <id>153</id>
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-               <id>149</id>
-            </clade>
-            <id>145</id>
-         </clade>
-         <clade>
-            <branch_length>0.01125</branch_length>
-            <confidence type="bootstrap">71.0</confidence>
-            <clade>
-               <branch_length>0.06335</branch_length>
-               <confidence type="bootstrap">97.0</confidence>
-               <clade>
-                  <branch_length>0.0196</branch_length>
-                  <confidence type="bootstrap">76.0</confidence>
-                  <clade>
-                     <branch_length>0.0401</branch_length>
-                     <confidence type="bootstrap">87.0</confidence>
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-               <value>93</value>
-               <value>70</value>
-               <value>42</value>
-            </values>
-            <values for="122">
-               <value>66</value>
-               <value>55</value>
-               <value>68</value>
-            </values>
-            <values for="123">
-               <value>2</value>
-               <value>78</value>
-               <value>3</value>
-            </values>
-            <values for="124">
-               <value>78</value>
-               <value>20</value>
-               <value>75</value>
-            </values>
-            <values for="126">
-               <value>24</value>
-               <value>23</value>
-               <value>55</value>
-            </values>
-            <values for="127">
-               <value>94</value>
-               <value>44</value>
-               <value>17</value>
-            </values>
-            <values for="128">
-               <value>84</value>
-               <value>88</value>
-               <value>56</value>
-            </values>
-            <values for="132">
-               <value>36</value>
-               <value>86</value>
-               <value>38</value>
-            </values>
-            <values for="133">
-               <value>82</value>
-               <value>70</value>
-               <value>14</value>
-            </values>
-            <values for="136">
-               <value>82</value>
-               <value>70</value>
-               <value>73</value>
-            </values>
-            <values for="137">
-               <value>79</value>
-               <value>97</value>
-               <value>79</value>
-            </values>
-            <values for="140">
-               <value>57</value>
-               <value>39</value>
-               <value>37</value>
-            </values>
-            <values for="141">
-               <value>86</value>
-               <value>73</value>
-               <value>62</value>
-            </values>
-            <values for="147">
-               <value>40</value>
-               <value>28</value>
-               <value>87</value>
-            </values>
-            <values for="148">
-               <value>65</value>
-               <value>58</value>
-               <value>5</value>
-            </values>
-            <values for="151">
-               <value>71</value>
-               <value>45</value>
-               <value>30</value>
-            </values>
-            <values for="152">
-               <value>67</value>
-               <value>32</value>
-               <value>70</value>
-            </values>
-            <values for="154">
-               <value>80</value>
-               <value>10</value>
-               <value>76</value>
-            </values>
-            <values for="155">
-               <value>67</value>
-               <value>81</value>
-               <value>28</value>
-            </values>
-            <values for="161">
-               <value>59</value>
-               <value>80</value>
-               <value>89</value>
-            </values>
-            <values for="162">
-               <value>48</value>
-               <value>58</value>
-               <value>41</value>
-            </values>
-            <values for="163">
-               <value>80</value>
-               <value>97</value>
-               <value>80</value>
-            </values>
-            <values for="164">
-               <value>84</value>
-               <value>4</value>
-               <value>63</value>
-            </values>
-            <values for="166">
-               <value>84</value>
-               <value>88</value>
-               <value>47</value>
-            </values>
-            <values for="167">
-               <value>14</value>
-               <value>30</value>
-               <value>66</value>
-            </values>
-            <values for="168">
-               <value>85</value>
-               <value>24</value>
-               <value>33</value>
-            </values>
-            <values for="174">
-               <value>2</value>
-               <value>8</value>
-               <value>14</value>
-            </values>
-            <values for="175">
-               <value>86</value>
-               <value>40</value>
-               <value>64</value>
-            </values>
-            <values for="176">
-               <value>68</value>
-               <value>73</value>
-               <value>60</value>
-            </values>
-            <values for="177">
-               <value>24</value>
-               <value>85</value>
-               <value>98</value>
-            </values>
-            <values for="179">
-               <value>1</value>
-               <value>49</value>
-               <value>12</value>
-            </values>
-            <values for="180">
-               <value>47</value>
-               <value>41</value>
-               <value>83</value>
-            </values>
-            <values for="184">
-               <value>36</value>
-               <value>57</value>
-               <value>61</value>
-            </values>
-            <values for="185">
-               <value>3</value>
-               <value>11</value>
-               <value>94</value>
-            </values>
-            <values for="189">
-               <value>31</value>
-               <value>71</value>
-               <value>99</value>
-            </values>
-            <values for="190">
-               <value>75</value>
-               <value>58</value>
-               <value>26</value>
-            </values>
-            <values for="191">
-               <value>41</value>
-               <value>92</value>
-               <value>33</value>
-            </values>
-            <values for="192">
-               <value>66</value>
-               <value>51</value>
-               <value>22</value>
-            </values>
-            <values for="193">
-               <value>66</value>
-               <value>18</value>
-               <value>36</value>
-            </values>
-            <values for="194">
-               <value>57</value>
-               <value>77</value>
-               <value>26</value>
-            </values>
-            <values for="196">
-               <value>60</value>
-               <value>75</value>
-               <value>90</value>
-            </values>
-            <values for="197">
-               <value>6</value>
-               <value>21</value>
-               <value>30</value>
-            </values>
-            <values for="202">
-               <value>31</value>
-               <value>7</value>
-               <value>47</value>
-            </values>
-            <values for="203">
-               <value>5</value>
-               <value>7</value>
-               <value>44</value>
-            </values>
-            <values for="209">
-               <value>44</value>
-               <value>63</value>
-               <value>42</value>
-            </values>
-            <values for="210">
-               <value>84</value>
-               <value>96</value>
-               <value>17</value>
-            </values>
-            <values for="213">
-               <value>5</value>
-               <value>0</value>
-               <value>5</value>
-            </values>
-            <values for="214">
-               <value>62</value>
-               <value>10</value>
-               <value>72</value>
-            </values>
-            <values for="216">
-               <value>45</value>
-               <value>80</value>
-               <value>51</value>
-            </values>
-            <values for="217">
-               <value>53</value>
-               <value>68</value>
-               <value>17</value>
-            </values>
-            <values for="223">
-               <value>87</value>
-               <value>16</value>
-               <value>94</value>
-            </values>
-            <values for="224">
-               <value>98</value>
-               <value>27</value>
-               <value>83</value>
-            </values>
-            <values for="225">
-               <value>23</value>
-               <value>82</value>
-               <value>21</value>
-            </values>
-            <values for="226">
-               <value>88</value>
-               <value>85</value>
-               <value>79</value>
-            </values>
-            <values for="231">
-               <value>80</value>
-               <value>31</value>
-               <value>68</value>
-            </values>
-            <values for="232">
-               <value>11</value>
-               <value>72</value>
-               <value>53</value>
-            </values>
-            <values for="235">
-               <value>66</value>
-               <value>44</value>
-               <value>56</value>
-            </values>
-            <values for="236">
-               <value>45</value>
-               <value>23</value>
-               <value>67</value>
-            </values>
-            <values for="237">
-               <value>28</value>
-               <value>25</value>
-               <value>19</value>
-            </values>
-            <values for="238">
-               <value>89</value>
-               <value>3</value>
-               <value>30</value>
-            </values>
-            <values for="239">
-               <value>30</value>
-               <value>47</value>
-               <value>4</value>
-            </values>
-            <values for="243">
-               <value>32</value>
-               <value>49</value>
-               <value>42</value>
-            </values>
-            <values for="244">
-               <value>32</value>
-               <value>71</value>
-               <value>74</value>
-            </values>
-            <values for="247">
-               <value>44</value>
-               <value>70</value>
-               <value>25</value>
-            </values>
-            <values for="248">
-               <value>33</value>
-               <value>16</value>
-               <value>63</value>
-            </values>
-            <values for="249">
-               <value>68</value>
-               <value>77</value>
-               <value>73</value>
-            </values>
-            <values for="253">
-               <value>62</value>
-               <value>22</value>
-               <value>51</value>
-            </values>
-            <values for="254">
-               <value>8</value>
-               <value>2</value>
-               <value>47</value>
-            </values>
-            <values for="255">
-               <value>11</value>
-               <value>14</value>
-               <value>89</value>
-            </values>
-            <values for="257">
-               <value>13</value>
-               <value>84</value>
-               <value>75</value>
-            </values>
-            <values for="258">
-               <value>38</value>
-               <value>34</value>
-               <value>82</value>
-            </values>
-            <values for="264">
-               <value>19</value>
-               <value>70</value>
-               <value>53</value>
-            </values>
-            <values for="265">
-               <value>48</value>
-               <value>59</value>
-               <value>49</value>
-            </values>
-            <values for="266">
-               <value>36</value>
-               <value>28</value>
-               <value>77</value>
-            </values>
-            <values for="267">
-               <value>66</value>
-               <value>72</value>
-               <value>84</value>
-            </values>
-            <values for="271">
-               <value>47</value>
-               <value>43</value>
-               <value>41</value>
-            </values>
-            <values for="272">
-               <value>38</value>
-               <value>19</value>
-               <value>41</value>
-            </values>
-            <values for="273">
-               <value>57</value>
-               <value>1</value>
-               <value>86</value>
-            </values>
-            <values for="276">
-               <value>50</value>
-               <value>76</value>
-               <value>64</value>
-            </values>
-            <values for="277">
-               <value>93</value>
-               <value>31</value>
-               <value>90</value>
-            </values>
-            <values for="278">
-               <value>41</value>
-               <value>25</value>
-               <value>61</value>
-            </values>
-            <values for="281">
-               <value>51</value>
-               <value>74</value>
-               <value>2</value>
-            </values>
-            <values for="282">
-               <value>58</value>
-               <value>22</value>
-               <value>8</value>
-            </values>
-            <values for="284">
-               <value>62</value>
-               <value>25</value>
-               <value>99</value>
-            </values>
-            <values for="285">
-               <value>39</value>
-               <value>77</value>
-               <value>60</value>
-            </values>
-            <values for="288">
-               <value>25</value>
-               <value>71</value>
-               <value>35</value>
-            </values>
-            <values for="289">
-               <value>19</value>
-               <value>92</value>
-               <value>45</value>
-            </values>
-            <values for="290">
-               <value>97</value>
-               <value>77</value>
-               <value>95</value>
-            </values>
-            <values for="295">
-               <value>33</value>
-               <value>86</value>
-               <value>60</value>
-            </values>
-            <values for="296">
-               <value>5</value>
-               <value>70</value>
-               <value>25</value>
-            </values>
-            <values for="297">
-               <value>94</value>
-               <value>46</value>
-               <value>72</value>
-            </values>
-            <values for="301">
-               <value>49</value>
-               <value>45</value>
-               <value>61</value>
-            </values>
-            <values for="302">
-               <value>2</value>
-               <value>99</value>
-               <value>94</value>
-            </values>
-            <values for="303">
-               <value>28</value>
-               <value>6</value>
-               <value>39</value>
-            </values>
-            <values for="304">
-               <value>87</value>
-               <value>51</value>
-               <value>36</value>
-            </values>
-            <values for="310">
-               <value>77</value>
-               <value>63</value>
-               <value>86</value>
-            </values>
-            <values for="311">
-               <value>76</value>
-               <value>26</value>
-               <value>48</value>
-            </values>
-            <values for="312">
-               <value>85</value>
-               <value>0</value>
-               <value>64</value>
-            </values>
-            <values for="315">
-               <value>78</value>
-               <value>98</value>
-               <value>90</value>
-            </values>
-            <values for="316">
-               <value>44</value>
-               <value>14</value>
-               <value>13</value>
-            </values>
-            <values for="317">
-               <value>59</value>
-               <value>40</value>
-               <value>90</value>
-            </values>
-            <values for="320">
-               <value>25</value>
-               <value>79</value>
-               <value>79</value>
-            </values>
-            <values for="321">
-               <value>74</value>
-               <value>62</value>
-               <value>72</value>
-            </values>
-            <values for="324">
-               <value>5</value>
-               <value>63</value>
-               <value>60</value>
-            </values>
-            <values for="325">
-               <value>12</value>
-               <value>9</value>
-               <value>80</value>
-            </values>
-            <values for="326">
-               <value>46</value>
-               <value>89</value>
-               <value>52</value>
-            </values>
-            <values for="329">
-               <value>50</value>
-               <value>44</value>
-               <value>4</value>
-            </values>
-            <values for="330">
-               <value>89</value>
-               <value>92</value>
-               <value>40</value>
-            </values>
-            <values for="331">
-               <value>44</value>
-               <value>30</value>
-               <value>11</value>
-            </values>
-            <values for="332">
-               <value>41</value>
-               <value>37</value>
-               <value>22</value>
-            </values>
-         </data>
-      </graph>
-      <graph type="heatmap">
-         <name>Heatmap test graph with fields</name>
-         <legend show="0">
-            <field>
-               <name>heat1</name>
-            </field>
-            <field>
-               <name>heat2</name>
-            </field>
-            <field>
-               <name>heat3</name>
-            </field>
-            <field>
-               <name>heat4</name>
-            </field>
-            <field>
-               <name>heat5</name>
-            </field>
-            <field>
-               <name>heat6</name>
-            </field>
-            <field>
-               <name>heat7</name>
-            </field>
-            <field>
-               <name>heat8</name>
-            </field>
-            <field>
-               <name>heat9</name>
-            </field>
-            <gradient>
-               <name>YlOrRd</name>
-               <classes>9</classes>
-            </gradient>
-         </legend>
-         <data>
-            <values for="10">
-               <value>64</value>
-               <value>38</value>
-               <value>84</value>
-               <value>9</value>
-               <value>74</value>
-               <value>33</value>
-               <value>82</value>
-               <value>37</value>
-               <value>12</value>
-            </values>
-            <values for="11">
-               <value>6</value>
-               <value>0</value>
-               <value>95</value>
-               <value>74</value>
-               <value>62</value>
-               <value>47</value>
-               <value>1</value>
-               <value>48</value>
-               <value>53</value>
-            </values>
-            <values for="13">
-               <value>16</value>
-               <value>63</value>
-               <value>92</value>
-               <value>35</value>
-               <value>72</value>
-               <value>24</value>
-               <value>20</value>
-               <value>7</value>
-               <value>71</value>
-            </values>
-            <values for="14">
-               <value>85</value>
-               <value>56</value>
-               <value>23</value>
-               <value>91</value>
-               <value>8</value>
-               <value>96</value>
-               <value>32</value>
-               <value>30</value>
-               <value>65</value>
-            </values>
-            <values for="16">
-               <value>53</value>
-               <value>64</value>
-               <value>30</value>
-               <value>39</value>
-               <value>10</value>
-               <value>9</value>
-               <value>92</value>
-               <value>59</value>
-               <value>42</value>
-            </values>
-            <values for="17">
-               <value>29</value>
-               <value>86</value>
-               <value>0</value>
-               <value>0</value>
-               <value>99</value>
-               <value>67</value>
-               <value>89</value>
-               <value>92</value>
-               <value>40</value>
-            </values>
-            <values for="22">
-               <value>71</value>
-               <value>89</value>
-               <value>7</value>
-               <value>31</value>
-               <value>26</value>
-               <value>51</value>
-               <value>74</value>
-               <value>90</value>
-               <value>25</value>
-            </values>
-            <values for="23">
-               <value>46</value>
-               <value>6</value>
-               <value>13</value>
-               <value>40</value>
-               <value>6</value>
-               <value>84</value>
-               <value>97</value>
-               <value>66</value>
-               <value>50</value>
-            </values>
-            <values for="24">
-               <value>6</value>
-               <value>52</value>
-               <value>22</value>
-               <value>22</value>
-               <value>72</value>
-               <value>89</value>
-               <value>60</value>
-               <value>71</value>
-               <value>11</value>
-            </values>
-            <values for="26">
-               <value>91</value>
-               <value>94</value>
-               <value>27</value>
-               <value>58</value>
-               <value>72</value>
-               <value>25</value>
-               <value>80</value>
-               <value>72</value>
-               <value>89</value>
-            </values>
-            <values for="27">
-               <value>5</value>
-               <value>90</value>
-               <value>70</value>
-               <value>11</value>
-               <value>25</value>
-               <value>28</value>
-               <value>10</value>
-               <value>32</value>
-               <value>65</value>
-            </values>
-            <values for="28">
-               <value>12</value>
-               <value>61</value>
-               <value>74</value>
-               <value>74</value>
-               <value>51</value>
-               <value>40</value>
-               <value>12</value>
-               <value>49</value>
-               <value>20</value>
-            </values>
-            <values for="31">
-               <value>89</value>
-               <value>31</value>
-               <value>68</value>
-               <value>64</value>
-               <value>78</value>
-               <value>43</value>
-               <value>16</value>
-               <value>40</value>
-               <value>19</value>
-            </values>
-            <values for="32">
-               <value>80</value>
-               <value>38</value>
-               <value>23</value>
-               <value>26</value>
-               <value>82</value>
-               <value>58</value>
-               <value>78</value>
-               <value>77</value>
-               <value>2</value>
-            </values>
-            <values for="36">
-               <value>87</value>
-               <value>51</value>
-               <value>36</value>
-               <value>96</value>
-               <value>64</value>
-               <value>83</value>
-               <value>90</value>
-               <value>15</value>
-               <value>94</value>
-            </values>
-            <values for="37">
-               <value>35</value>
-               <value>5</value>
-               <value>53</value>
-               <value>66</value>
-               <value>54</value>
-               <value>83</value>
-               <value>60</value>
-               <value>17</value>
-               <value>16</value>
-            </values>
-            <values for="38">
-               <value>31</value>
-               <value>91</value>
-               <value>65</value>
-               <value>18</value>
-               <value>75</value>
-               <value>95</value>
-               <value>10</value>
-               <value>12</value>
-               <value>83</value>
-            </values>
-            <values for="39">
-               <value>72</value>
-               <value>85</value>
-               <value>11</value>
-               <value>12</value>
-               <value>31</value>
-               <value>81</value>
-               <value>91</value>
-               <value>60</value>
-               <value>99</value>
-            </values>
-            <values for="45">
-               <value>58</value>
-               <value>61</value>
-               <value>83</value>
-               <value>62</value>
-               <value>85</value>
-               <value>45</value>
-               <value>85</value>
-               <value>76</value>
-               <value>52</value>
-            </values>
-            <values for="46">
-               <value>65</value>
-               <value>85</value>
-               <value>79</value>
-               <value>52</value>
-               <value>21</value>
-               <value>32</value>
-               <value>30</value>
-               <value>39</value>
-               <value>51</value>
-            </values>
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diff --git a/samples/species_tree_rio.xml b/samples/species_tree_rio.xml
deleted file mode 100755
index f8c4f42..0000000
--- a/samples/species_tree_rio.xml
+++ /dev/null
@@ -1,8012 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
-<phylogeny rooted="true" rerootable="false">
-  <name>tol_154.xml</name>
-  <clade>
-    <taxonomy>
-      <id provider="uniprot">131567</id>
-      <scientific_name>cellular organisms</scientific_name>
-    </taxonomy>
-    <clade>
-      <taxonomy>
-        <scientific_name>Neomura</scientific_name>
-      </taxonomy>
-      <clade>
-        <taxonomy>
-          <id provider="uniprot">2759</id>
-          <scientific_name>Eukaryota</scientific_name>
-          <rank>superkingdom</rank>
-        </taxonomy>
-        <clade>
-          <name>Unikonta</name>
-          <clade>
-            <taxonomy>
-              <id provider="uniprot">33154</id>
-              <scientific_name>Opisthokonta</scientific_name>
-              <common_name>Fungi/Metazoa group</common_name>
-            </taxonomy>
-            <clade>
-              <taxonomy>
-                <scientific_name>Holozoa</scientific_name>
-              </taxonomy>
-              <clade>
-                <name>Choanoflagellatea &amp; Metazoa</name>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">33208</id>
-                    <scientific_name>Metazoa</scientific_name>
-                    <rank>kingdom</rank>
-                  </taxonomy>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">6072</id>
-                      <scientific_name>Eumetazoa</scientific_name>
-                    </taxonomy>
-                    <reference doi="10.1038/nature06614">
-                    </reference>
-                    <clade>
-                      <name>Bilateria &amp; Cnidaria</name>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">33213</id>
-                          <scientific_name>Bilateria</scientific_name>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">33511</id>
-                            <scientific_name>Deuterostomia</scientific_name>
-                          </taxonomy>
-                          <reference doi="10.1038/nature04336">
-                          </reference>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">7711</id>
-                              <scientific_name>Chordata</scientific_name>
-                              <rank>phylum</rank>
-                            </taxonomy>
-                            <clade>
-                              <name>Urochordata &amp; Vertebrata</name>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">7742</id>
-                                  <scientific_name>Vertebrata</scientific_name>
-                                </taxonomy>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">7776</id>
-                                    <scientific_name>Gnathostomata</scientific_name>
-                                    <common_name>jawed vertebrates</common_name>
-                                    <rank>superclass</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">117571</id>
-                                      <scientific_name>Euteleostomi</scientific_name>
-                                      <common_name>bony vertebrates</common_name>
-                                    </taxonomy>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">8287</id>
-                                        <scientific_name>Sarcopterygii</scientific_name>
-                                        <common_name>lobe-finned fish</common_name>
-                                      </taxonomy>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">32523</id>
-                                          <scientific_name>Tetrapoda</scientific_name>
-                                        </taxonomy>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">32524</id>
-                                            <scientific_name>Amniota</scientific_name>
-                                          </taxonomy>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">40674</id>
-                                              <scientific_name>Mammalia</scientific_name>
-                                              <rank>class</rank>
-                                            </taxonomy>
-                                            <clade>
-                                              <name>Theria</name>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">9347</id>
-                                                  <scientific_name>Eutheria</scientific_name>
-                                                  <common_name>Placental mammals</common_name>
-                                                </taxonomy>
-                                                <reference doi="10.1002/bies.200900053">
-                                                  <desc>The new framework for understanding placental mammal evolution</desc>
-                                                </reference>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <scientific_name>Boreoeutheria</scientific_name>
-                                                    <synonym>Boreotheria</synonym>
-                                                  </taxonomy>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">314146</id>
-                                                      <scientific_name>Euarchontoglires</scientific_name>
-                                                      <rank>superorder</rank>
-                                                    </taxonomy>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <scientific_name>Euarchonta</scientific_name>
-                                                      </taxonomy>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">9443</id>
-                                                          <scientific_name>Primates</scientific_name>
-                                                          <rank>order</rank>
-                                                        </taxonomy>
-                                                        <clade>
-                                                          <taxonomy>
-                                                            <id provider="uniprot">376913</id>
-                                                            <scientific_name>Haplorrhini</scientific_name>
-                                                            <rank>suborder</rank>
-                                                          </taxonomy>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">314293</id>
-                                                              <scientific_name>Simiiformes</scientific_name>
-                                                              <rank>infraorder</rank>
-                                                            </taxonomy>
-                                                            <clade>
-                                                              <taxonomy>
-                                                                <id provider="uniprot">9526</id>
-                                                                <scientific_name>Catarrhini</scientific_name>
-                                                              </taxonomy>
-                                                              <clade>
-                                                                <taxonomy>
-                                                                  <id provider="uniprot">314295</id>
-                                                                  <scientific_name>Hominoidea</scientific_name>
-                                                                  <common_name>Apes</common_name>
-                                                                  <rank>superfamily</rank>
-                                                                </taxonomy>
-                                                                <clade>
-                                                                  <taxonomy>
-                                                                    <id provider="uniprot">9604</id>
-                                                                    <scientific_name>Hominidae</scientific_name>
-                                                                    <common_name>Great apes</common_name>
-                                                                    <rank>family</rank>
-                                                                  </taxonomy>
-                                                                  <clade>
-                                                                    <taxonomy>
-                                                                      <id provider="uniprot">207598</id>
-                                                                      <scientific_name>Homininae</scientific_name>
-                                                                      <rank>subfamily</rank>
-                                                                    </taxonomy>
-                                                                    <clade>
-                                                                      <taxonomy>
-                                                                        <scientific_name>Hominini</scientific_name>
-                                                                        <rank>tribe</rank>
-                                                                      </taxonomy>
-                                                                      <clade>
-                                                                        <taxonomy>
-                                                                          <id provider="uniprot">9606</id>
-                                                                          <code>HUMAN</code>
-                                                                          <scientific_name>Homo sapiens</scientific_name>
-                                                                          <common_name>Human</common_name>
-                                                                          <rank>species</rank>
-                                                                          <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>
-                                                                        </taxonomy>
-                                                                      </clade>
-                                                                      <clade>
-                                                                        <taxonomy>
-                                                                          <id provider="uniprot">9598</id>
-                                                                          <code>PANTR</code>
-                                                                          <scientific_name>Pan troglodytes</scientific_name>
-                                                                          <common_name>Chimpanzee</common_name>
-                                                                          <rank>species</rank>
-                                                                          <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>
-                                                                        </taxonomy>
-                                                                      </clade>
-                                                                    </clade>
-                                                                    <clade>
-                                                                      <taxonomy>
-                                                                        <id provider="uniprot">9595</id>
-                                                                        <code>GORGO</code>
-                                                                        <scientific_name>Gorilla gorilla gorilla</scientific_name>
-                                                                        <common_name>Western lowland gorilla</common_name>
-                                                                        <rank>subspecies</rank>
-                                                                        <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>
-                                                                      </taxonomy>
-                                                                    </clade>
-                                                                  </clade>
-                                                                  <clade>
-                                                                    <taxonomy>
-                                                                      <id provider="uniprot">9601</id>
-                                                                      <code>PONAB</code>
-                                                                      <scientific_name>Pongo abelii</scientific_name>
-                                                                      <common_name>Sumatran orangutan</common_name>
-                                                                      <synonym>Pongo pygmaeus abelii</synonym>
-                                                                      <rank>species</rank>
-                                                                      <uri>http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg</uri>
-                                                                    </taxonomy>
-                                                                  </clade>
-                                                                </clade>
-                                                                <clade>
-                                                                  <taxonomy>
-                                                                    <id provider="uniprot">61853</id>
-                                                                    <code>NOMLE</code>
-                                                                    <scientific_name>Nomascus leucogenys</scientific_name>
-                                                                    <common_name>Northern white-cheeked gibbon</common_name>
-                                                                    <synonym>Hylobates leucogenys</synonym>
-                                                                    <synonym>Hylobates concolor leucogenys</synonym>
-                                                                    <rank>species</rank>
-                                                                    <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>
-                                                                    <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>
-                                                                  </taxonomy>
-                                                                </clade>
-                                                              </clade>
-                                                              <clade>
-                                                                <taxonomy>
-                                                                  <id provider="uniprot">9528</id>
-                                                                  <scientific_name>Cercopithecinae</scientific_name>
-                                                                  <rank>subfamily</rank>
-                                                                </taxonomy>
-                                                                <clade>
-                                                                  <taxonomy>
-                                                                    <id provider="uniprot">9544</id>
-                                                                    <code>MACMU</code>
-                                                                    <scientific_name>Macaca mulatta</scientific_name>
-                                                                    <common_name>Rhesus macaque</common_name>
-                                                                    <rank>species</rank>
-                                                                    <uri>http://www.our-pets.net/images/rhesus1.jpg</uri>
-                                                                  </taxonomy>
-                                                                </clade>
-                                                                <clade>
-                                                                  <taxonomy>
-                                                                    <id provider="uniprot">9557</id>
-                                                                    <code>PAPHA</code>
-                                                                    <scientific_name>Papio hamadryas</scientific_name>
-                                                                    <common_name>Hamadryas baboon</common_name>
-                                                                    <rank>species</rank>
-                                                                    <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>
-                                                                  </taxonomy>
-                                                                </clade>
-                                                              </clade>
-                                                            </clade>
-                                                            <clade>
-                                                              <taxonomy>
-                                                                <id provider="uniprot">9483</id>
-                                                                <code>CALJA</code>
-                                                                <scientific_name>Callithrix jacchus</scientific_name>
-                                                                <common_name>White-tufted-ear marmoset</common_name>
-                                                                <synonym>Callithrix jacchus jacchus</synonym>
-                                                                <rank>species</rank>
-                                                                <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>
-                                                              </taxonomy>
-                                                            </clade>
-                                                          </clade>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">9478</id>
-                                                              <code>TARSY</code>
-                                                              <scientific_name>Tarsius syrichta</scientific_name>
-                                                              <common_name>Philippine tarsier</common_name>
-                                                              <rank>species</rank>
-                                                              <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>
-                                                            </taxonomy>
-                                                          </clade>
-                                                        </clade>
-                                                        <clade>
-                                                          <taxonomy>
-                                                            <id provider="uniprot">376911</id>
-                                                            <scientific_name>Strepsirrhini</scientific_name>
-                                                            <rank>suborder</rank>
-                                                          </taxonomy>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">30608</id>
-                                                              <code>MICMU</code>
-                                                              <scientific_name>Microcebus murinus</scientific_name>
-                                                              <common_name>Lesser mouse lemur</common_name>
-                                                              <synonym>Gray Mouse Lemur</synonym>
-                                                              <rank>species</rank>
-                                                              <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>
-                                                            </taxonomy>
-                                                          </clade>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">30611</id>
-                                                              <code>OTOGA</code>
-                                                              <scientific_name>Otolemur garnettii</scientific_name>
-                                                              <common_name>Garnett&apos;s greater bushbaby</common_name>
-                                                              <synonym>Galago garnetti</synonym>
-                                                              <synonym>Small-eared galago</synonym>
-                                                              <synonym>Garnett&apos;s greater bushbaby</synonym>
-                                                              <rank>species</rank>
-                                                              <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>
-                                                            </taxonomy>
-                                                          </clade>
-                                                        </clade>
-                                                      </clade>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">37347</id>
-                                                          <code>TUPBE</code>
-                                                          <scientific_name>Tupaia belangeri</scientific_name>
-                                                          <common_name>Common tree shrew</common_name>
-                                                          <synonym>Tupaia glis belangeri</synonym>
-                                                          <rank>species</rank>
-                                                          <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>
-                                                        </taxonomy>
-                                                      </clade>
-                                                    </clade>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">314147</id>
-                                                        <scientific_name>Glires</scientific_name>
-                                                        <common_name>Rodents and rabbits</common_name>
-                                                      </taxonomy>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">9989</id>
-                                                          <scientific_name>Rodentia</scientific_name>
-                                                          <rank>order</rank>
-                                                        </taxonomy>
-                                                        <clade>
-                                                          <name>Hystricomorpha &amp; Sciurognathi</name>
-                                                          <reference doi="10.1186/1471-2148-9-71">
-                                                            <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>
-                                                          </reference>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">33553</id>
-                                                              <scientific_name>Sciurognathi</scientific_name>
-                                                              <rank>suborder</rank>
-                                                            </taxonomy>
-                                                            <clade>
-                                                              <taxonomy>
-                                                                <id provider="uniprot">337687</id>
-                                                                <scientific_name>Muroidea</scientific_name>
-                                                              </taxonomy>
-                                                              <clade>
-                                                                <taxonomy>
-                                                                  <id provider="uniprot">39107</id>
-                                                                  <scientific_name>Murinae</scientific_name>
-                                                                  <rank>subfamily</rank>
-                                                                </taxonomy>
-                                                                <clade>
-                                                                  <taxonomy>
-                                                                    <id provider="uniprot">10090</id>
-                                                                    <code>MOUSE</code>
-                                                                    <scientific_name>Mus musculus</scientific_name>
-                                                                    <common_name>Mouse</common_name>
-                                                                    <rank>species</rank>
-                                                                    <uri>http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg</uri>
-                                                                  </taxonomy>
-                                                                </clade>
-                                                                <clade>
-                                                                  <taxonomy>
-                                                                    <id provider="uniprot">10116</id>
-                                                                    <code>RAT</code>
-                                                                    <scientific_name>Rattus norvegicus</scientific_name>
-                                                                    <common_name>Rat</common_name>
-                                                                    <rank>species</rank>
-                                                                    <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>
-                                                                  </taxonomy>
-                                                                </clade>
-                                                              </clade>
-                                                              <clade>
-                                                                <taxonomy>
-                                                                  <id provider="uniprot">10036</id>
-                                                                  <code>MESAU</code>
-                                                                  <scientific_name>Mesocricetus auratus</scientific_name>
-                                                                  <common_name>Golden hamster</common_name>
-                                                                  <rank>species</rank>
-                                                                  <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG/800px-Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG</uri>
-                                                                </taxonomy>
-                                                              </clade>
-                                                            </clade>
-                                                            <clade>
-                                                              <taxonomy>
-                                                                <id provider="uniprot">10020</id>
-                                                                <code>DIPOR</code>
-                                                                <scientific_name>Dipodomys ordii</scientific_name>
-                                                                <common_name>Ord&apos;s kangaroo rat</common_name>
-                                                                <rank>species</rank>
-                                                                <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>
-                                                              </taxonomy>
-                                                            </clade>
-                                                          </clade>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">33550</id>
-                                                              <scientific_name>Hystricognathi</scientific_name>
-                                                              <rank>suborder</rank>
-                                                            </taxonomy>
-                                                            <clade>
-                                                              <taxonomy>
-                                                                <id provider="uniprot">10141</id>
-                                                                <code>CAVPO</code>
-                                                                <scientific_name>Cavia porcellus</scientific_name>
-                                                                <common_name>Guinea pig</common_name>
-                                                                <rank>species</rank>
-                                                                <uri>http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg</uri>
-                                                              </taxonomy>
-                                                            </clade>
-                                                            <clade>
-                                                              <taxonomy>
-                                                                <id provider="uniprot">10181</id>
-                                                                <code>HETGA</code>
-                                                                <scientific_name>Heterocephalus glaber</scientific_name>
-                                                                <common_name>Naked mole rat</common_name>
-                                                                <rank>species</rank>
-                                                                <uri>http://calphotos.berkeley.edu/imgs/512x768/9092_3191/3555/0080.jpeg</uri>
-                                                              </taxonomy>
-                                                            </clade>
-                                                          </clade>
-                                                        </clade>
-                                                        <clade>
-                                                          <taxonomy>
-                                                            <id provider="uniprot">43179</id>
-                                                            <code>SPETR</code>
-                                                            <scientific_name>Spermophilus tridecemlineatus</scientific_name>
-                                                            <common_name>Thirteen-lined ground squirrel</common_name>
-                                                            <synonym>Ictidomys tridecemlineatus</synonym>
-                                                            <rank>species</rank>
-                                                            <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>
-                                                          </taxonomy>
-                                                        </clade>
-                                                      </clade>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">9975</id>
-                                                          <scientific_name>Lagomorpha</scientific_name>
-                                                          <rank>order</rank>
-                                                        </taxonomy>
-                                                        <clade>
-                                                          <taxonomy>
-                                                            <id provider="uniprot">9978</id>
-                                                            <code>OCHPR</code>
-                                                            <scientific_name>Ochotona princeps</scientific_name>
-                                                            <common_name>Southern American pika</common_name>
-                                                            <rank>species</rank>
-                                                            <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>
-                                                          </taxonomy>
-                                                        </clade>
-                                                        <clade>
-                                                          <taxonomy>
-                                                            <id provider="uniprot">9986</id>
-                                                            <code>RABIT</code>
-                                                            <scientific_name>Oryctolagus cuniculus</scientific_name>
-                                                            <common_name>Rabbit</common_name>
-                                                            <rank>species</rank>
-                                                            <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Rabbit_in_montana.jpg/675px-Rabbit_in_montana.jpg</uri>
-                                                          </taxonomy>
-                                                        </clade>
-                                                      </clade>
-                                                    </clade>
-                                                  </clade>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">314145</id>
-                                                      <scientific_name>Laurasiatheria</scientific_name>
-                                                      <rank>superorder</rank>
-                                                    </taxonomy>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <scientific_name>Scrotifera</scientific_name>
-                                                      </taxonomy>
-                                                      <clade>
-                                                        <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>
-                                                        <clade>
-                                                          <name>Perissodactyla &amp; Cetartiodactyla</name>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">91561</id>
-                                                              <scientific_name>Cetartiodactyla</scientific_name>
-                                                              <common_name>Even-toed ungulates</common_name>
-                                                            </taxonomy>
-                                                            <clade>
-                                                              <name>Cetruminantia &amp; Suina</name>
-                                                              <clade>
-                                                                <taxonomy>
-                                                                  <scientific_name>Cetruminantia</scientific_name>
-                                                                </taxonomy>
-                                                                <clade>
-                                                                  <taxonomy>
-                                                                    <id provider="uniprot">9895</id>
-                                                                    <scientific_name>Bovidae</scientific_name>
-                                                                    <rank>family</rank>
-                                                                  </taxonomy>
-                                                                  <clade>
-                                                                    <taxonomy>
-                                                                      <id provider="uniprot">9913</id>
-                                                                      <code>BOVIN</code>
-                                                                      <scientific_name>Bos taurus</scientific_name>
-                                                                      <common_name>Bovine</common_name>
-                                                                      <synonym>Bos bovis</synonym>
-                                                                      <rank>species</rank>
-                                                                      <uri>http://bioweb.uwlax.edu/bio203/s2007/hayes_katy/images/DSC01638.JPG</uri>
-                                                                    </taxonomy>
-                                                                  </clade>
-                                                                  <clade>
-                                                                    <taxonomy>
-                                                                      <id provider="uniprot">9940</id>
-                                                                      <code>SHEEP</code>
-                                                                      <scientific_name>Ovis aries</scientific_name>
-                                                                      <common_name>Sheep</common_name>
-                                                                      <rank>species</rank>
-                                                                      <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>
-                                                                    </taxonomy>
-                                                                  </clade>
-                                                                </clade>
-                                                                <clade>
-                                                                  <taxonomy>
-                                                                    <id provider="uniprot">9721</id>
-                                                                    <scientific_name>Cetacea</scientific_name>
-                                                                    <common_name>Whales</common_name>
-                                                                    <rank>order</rank>
-                                                                  </taxonomy>
-                                                                  <clade>
-                                                                    <taxonomy>
-                                                                      <id provider="uniprot">9771</id>
-                                                                      <code>BALMU</code>
-                                                                      <scientific_name>Balaenoptera musculus</scientific_name>
-                                                                      <common_name>Blue whale</common_name>
-                                                                      <rank>species</rank>
-                                                                      <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>
-                                                                    </taxonomy>
-                                                                  </clade>
-                                                                  <clade>
-                                                                    <taxonomy>
-                                                                      <id provider="uniprot">9739</id>
-                                                                      <code>TURTR</code>
-                                                                      <scientific_name>Tursiops truncatus</scientific_name>
-                                                                      <common_name>Atlantic bottle-nosed dolphin</common_name>
-                                                                      <synonym>Delphinus truncatus</synonym>
-                                                                      <rank>species</rank>
-                                                                      <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>
-                                                                    </taxonomy>
-                                                                  </clade>
-                                                                </clade>
-                                                              </clade>
-                                                              <clade>
-                                                                <taxonomy>
-                                                                  <id provider="uniprot">9823</id>
-                                                                  <code>PIG</code>
-                                                                  <scientific_name>Sus scrofa</scientific_name>
-                                                                  <common_name>Pig</common_name>
-                                                                  <rank>species</rank>
-                                                                  <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>
-                                                                </taxonomy>
-                                                              </clade>
-                                                            </clade>
-                                                            <clade>
-                                                              <taxonomy>
-                                                                <id provider="uniprot">30538</id>
-                                                                <code>LAMPA</code>
-                                                                <scientific_name>Lama guanicoe pacos</scientific_name>
-                                                                <common_name>Alpaca</common_name>
-                                                                <synonym>Lama pacos</synonym>
-                                                                <rank>species</rank>
-                                                                <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg</uri>
-                                                              </taxonomy>
-                                                            </clade>
-                                                          </clade>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">9796</id>
-                                                              <code>HORSE</code>
-                                                              <scientific_name>Equus caballus</scientific_name>
-                                                              <common_name>Horse</common_name>
-                                                              <rank>species</rank>
-                                                              <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>
-                                                            </taxonomy>
-                                                          </clade>
-                                                        </clade>
-                                                        <clade>
-                                                          <taxonomy>
-                                                            <id provider="uniprot">9397</id>
-                                                            <scientific_name>Chiroptera</scientific_name>
-                                                            <common_name>Bats</common_name>
-                                                            <rank>order</rank>
-                                                          </taxonomy>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">59463</id>
-                                                              <code>MYOLU</code>
-                                                              <scientific_name>Myotis lucifugus</scientific_name>
-                                                              <common_name>Little brown bat</common_name>
-                                                              <rank>species</rank>
-                                                              <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>
-                                                            </taxonomy>
-                                                          </clade>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">132908</id>
-                                                              <code>PTEVA</code>
-                                                              <scientific_name>Pteropus vampyrus</scientific_name>
-                                                              <common_name>Large flying fox</common_name>
-                                                              <rank>species</rank>
-                                                              <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>
-                                                            </taxonomy>
-                                                          </clade>
-                                                        </clade>
-                                                      </clade>
-                                                      <clade>
-                                                        <name>Carnivora</name>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">33554</id>
-                                                          <scientific_name>Carnivora</scientific_name>
-                                                          <rank>order</rank>
-                                                        </taxonomy>
-                                                        <clade>
-                                                          <taxonomy>
-                                                            <id provider="uniprot">379584</id>
-                                                            <scientific_name>Caniformia</scientific_name>
-                                                            <rank>suborder</rank>
-                                                          </taxonomy>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">9646</id>
-                                                              <code>AILME</code>
-                                                              <scientific_name>Ailuropoda melanoleuca</scientific_name>
-                                                              <common_name>Giant panda</common_name>
-                                                              <rank>species</rank>
-                                                              <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>
-                                                            </taxonomy>
-                                                          </clade>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">9615</id>
-                                                              <code>CANFA</code>
-                                                              <scientific_name>Canis familiaris</scientific_name>
-                                                              <common_name>Dog</common_name>
-                                                              <synonym>Canis lupus familiaris</synonym>
-                                                              <rank>subspecies</rank>
-                                                              <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>
-                                                            </taxonomy>
-                                                          </clade>
-                                                        </clade>
-                                                        <clade>
-                                                          <taxonomy>
-                                                            <id provider="uniprot">9685</id>
-                                                            <code>FELCA</code>
-                                                            <scientific_name>Felis catus</scientific_name>
-                                                            <common_name>Cat</common_name>
-                                                            <synonym>Felis silvestris catus</synonym>
-                                                            <rank>species</rank>
-                                                            <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>
-                                                          </taxonomy>
-                                                        </clade>
-                                                      </clade>
-                                                    </clade>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">9362</id>
-                                                        <scientific_name>Insectivora</scientific_name>
-                                                        <common_name>hedgehogs, shrews, moles and others</common_name>
-                                                        <rank>order</rank>
-                                                      </taxonomy>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">9365</id>
-                                                          <code>ERIEU</code>
-                                                          <scientific_name>Erinaceus europaeus</scientific_name>
-                                                          <common_name>Western European hedgehog</common_name>
-                                                          <rank>species</rank>
-                                                          <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>
-                                                        </taxonomy>
-                                                      </clade>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">42254</id>
-                                                          <code>SORAR</code>
-                                                          <scientific_name>Sorex araneus</scientific_name>
-                                                          <common_name>Eurasian common shrew</common_name>
-                                                          <synonym>European shrew</synonym>
-                                                          <rank>species</rank>
-                                                          <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>
-                                                        </taxonomy>
-                                                      </clade>
-                                                    </clade>
-                                                  </clade>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <scientific_name>Atlantogenata</scientific_name>
-                                                  </taxonomy>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">311790</id>
-                                                      <scientific_name>Afrotheria</scientific_name>
-                                                      <rank>superorder</rank>
-                                                    </taxonomy>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <scientific_name>Paenungulata</scientific_name>
-                                                      </taxonomy>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">9785</id>
-                                                          <code>LOXAF</code>
-                                                          <scientific_name>Loxodonta africana</scientific_name>
-                                                          <common_name>African savanna elephant</common_name>
-                                                          <rank>species</rank>
-                                                          <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>
-                                                        </taxonomy>
-                                                      </clade>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">9813</id>
-                                                          <code>PROCA</code>
-                                                          <scientific_name>Procavia capensis</scientific_name>
-                                                          <common_name>Cape hyrax</common_name>
-                                                          <synonym>Rock dassie</synonym>
-                                                          <rank>species</rank>
-                                                          <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>
-                                                        </taxonomy>
-                                                      </clade>
-                                                    </clade>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">9371</id>
-                                                        <code>ECHTE</code>
-                                                        <scientific_name>Echinops telfairi</scientific_name>
-                                                        <common_name>Lesser hedgehog tenrec</common_name>
-                                                        <rank>species</rank>
-                                                        <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>
-                                                      </taxonomy>
-                                                    </clade>
-                                                  </clade>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">9348</id>
-                                                      <scientific_name>Xenarthra</scientific_name>
-                                                      <synonym>Edentata</synonym>
-                                                      <rank>superorder</rank>
-                                                    </taxonomy>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">9358</id>
-                                                        <code>CHOHO</code>
-                                                        <scientific_name>Choloepus hoffmanni</scientific_name>
-                                                        <common_name>Hoffmann&apos;s two-fingered sloth</common_name>
-                                                        <rank>species</rank>
-                                                        <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>
-                                                      </taxonomy>
-                                                    </clade>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">9361</id>
-                                                        <code>DASNO</code>
-                                                        <scientific_name>Dasypus novemcinctus</scientific_name>
-                                                        <common_name>Nine-banded armadillo</common_name>
-                                                        <rank>species</rank>
-                                                        <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>
-                                                      </taxonomy>
-                                                    </clade>
-                                                  </clade>
-                                                </clade>
-                                              </clade>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">9263</id>
-                                                  <scientific_name>Metatheria</scientific_name>
-                                                  <common_name>Marsupials</common_name>
-                                                </taxonomy>
-                                                <reference doi="10.1016/j.ympev.2004.05.004">
-                                                  <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>
-                                                </reference>
-                                                <reference>
-                                                </reference>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <scientific_name>Eometatheria</scientific_name>
-                                                  </taxonomy>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">9315</id>
-                                                      <code>MACEU</code>
-                                                      <scientific_name>Macropus eugenii</scientific_name>
-                                                      <common_name>Tammar wallaby</common_name>
-                                                      <rank>species</rank>
-                                                      <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>
-                                                    </taxonomy>
-                                                  </clade>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">9305</id>
-                                                      <code>SARHA</code>
-                                                      <scientific_name>Sarcophilus harrisii</scientific_name>
-                                                      <common_name>Tasmanian devil</common_name>
-                                                      <synonym>Sarcophilus laniarius</synonym>
-                                                      <rank>species</rank>
-                                                      <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>
-                                                    </taxonomy>
-                                                  </clade>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">13616</id>
-                                                    <code>MONDO</code>
-                                                    <scientific_name>Monodelphis domestica</scientific_name>
-                                                    <common_name>Short-tailed gray opossum</common_name>
-                                                    <rank>species</rank>
-                                                    <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                              </clade>
-                                            </clade>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">9258</id>
-                                                <code>ORNAN</code>
-                                                <scientific_name>Ornithorhynchus anatinus</scientific_name>
-                                                <common_name>Duckbill platypus</common_name>
-                                                <rank>species</rank>
-                                                <uri>http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png</uri>
-                                              </taxonomy>
-                                            </clade>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">8457</id>
-                                              <scientific_name>Sauropsida</scientific_name>
-                                            </taxonomy>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">1329799</id>
-                                                <scientific_name>Testudines + Archosauria group</scientific_name>
-                                              </taxonomy>
-                                              <reference doi="10.1038/ng.2615">
-                                                <desc>The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan</desc>
-                                              </reference>
-                                              <reference>
-                                              </reference>
-                                              <reference>
-                                              </reference>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">8492</id>
-                                                  <scientific_name>Archosauria</scientific_name>
-                                                </taxonomy>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">8825</id>
-                                                    <scientific_name>Neognathae</scientific_name>
-                                                    <rank>superorder</rank>
-                                                  </taxonomy>
-                                                  <clade>
-                                                    <name>Phasianidae &amp; Anatidae (waterfowl)</name>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">9005</id>
-                                                        <scientific_name>Phasianidae</scientific_name>
-                                                        <rank>family</rank>
-                                                      </taxonomy>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">9031</id>
-                                                          <code>CHICK</code>
-                                                          <scientific_name>Gallus gallus</scientific_name>
-                                                          <common_name>Chicken</common_name>
-                                                          <synonym>Gallus domesticus</synonym>
-                                                          <rank>species</rank>
-                                                          <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>
-                                                        </taxonomy>
-                                                      </clade>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">9103</id>
-                                                          <code>MELGA</code>
-                                                          <scientific_name>Meleagris gallopavo</scientific_name>
-                                                          <common_name>Common turkey</common_name>
-                                                          <rank>species</rank>
-                                                          <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>
-                                                        </taxonomy>
-                                                      </clade>
-                                                    </clade>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">8839</id>
-                                                        <code>ANAPL</code>
-                                                        <scientific_name>Anas platyrhynchos</scientific_name>
-                                                        <common_name>Domestic duck</common_name>
-                                                        <synonym>Anas boschas</synonym>
-                                                        <rank>species</rank>
-                                                        <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>
-                                                      </taxonomy>
-                                                    </clade>
-                                                  </clade>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">9126</id>
-                                                      <scientific_name>Passeriformes</scientific_name>
-                                                      <rank>order</rank>
-                                                    </taxonomy>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">59729</id>
-                                                        <code>TAEGU</code>
-                                                        <scientific_name>Taeniopygia guttata</scientific_name>
-                                                        <common_name>Zebra finch</common_name>
-                                                        <synonym>Poephila guttata</synonym>
-                                                        <rank>species</rank>
-                                                        <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>
-                                                      </taxonomy>
-                                                    </clade>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">59894</id>
-                                                        <code>FICAL</code>
-                                                        <scientific_name>Ficedula albicollis</scientific_name>
-                                                        <common_name>Collared flycatcher</common_name>
-                                                        <synonym>Muscicapa albicollis</synonym>
-                                                        <rank>species</rank>
-                                                        <uri>http://www.biolib.cz/IMG/GAL/156619.jpg</uri>
-                                                      </taxonomy>
-                                                    </clade>
-                                                  </clade>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">8496</id>
-                                                    <code>ALLMI</code>
-                                                    <scientific_name>Alligator mississippiensis</scientific_name>
-                                                    <common_name>American alligator</common_name>
-                                                    <rank>species</rank>
-                                                    <uri>http://www.herpcenter.com/reptile-caresheets/images/american_alligator.jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                              </clade>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">13735</id>
-                                                  <code>PELSI</code>
-                                                  <scientific_name>Pelodiscus sinensis</scientific_name>
-                                                  <authority>(Wiegmann, 1835) Cox et al. 1998</authority>
-                                                  <common_name>Chinese softshell turtle</common_name>
-                                                  <synonym>Trionyx sinensis</synonym>
-                                                  <rank>species</rank>
-                                                  <uri>http://www.chelonia.org/PsinensisTR1.jpg</uri>
-                                                </taxonomy>
-                                              </clade>
-                                            </clade>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">1329911</id>
-                                                <scientific_name>Toxicofera</scientific_name>
-                                              </taxonomy>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">8570</id>
-                                                  <scientific_name>Serpentes</scientific_name>
-                                                  <common_name>snakes</common_name>
-                                                  <rank>infraorder</rank>
-                                                </taxonomy>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">8665</id>
-                                                    <code>OPHHA</code>
-                                                    <scientific_name>Ophiophagus hannah</scientific_name>
-                                                    <common_name>King cobra</common_name>
-                                                    <synonym>Naja hannah</synonym>
-                                                    <rank>species</rank>
-                                                    <uri>http://www.thehindu.com/multimedia/dynamic/01674/KING_COBRA_1674012e.jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">176946</id>
-                                                    <code>PYTBI</code>
-                                                    <scientific_name>Python bivittatus</scientific_name>
-                                                    <common_name>Burmese python</common_name>
-                                                    <synonym>Python molurus bivittatus</synonym>
-                                                    <rank>species</rank>
-                                                    <uri>http://www.nps.gov/ever/parknews/images/KLwoodrat_python_5626.jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                              </clade>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">28377</id>
-                                                  <code>ANOCA</code>
-                                                  <scientific_name>Anolis carolinensis</scientific_name>
-                                                  <authority>Voigt, 1832</authority>
-                                                  <common_name>Green anole</common_name>
-                                                  <synonym>American chameleon</synonym>
-                                                  <rank>species</rank>
-                                                  <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>
-                                                  <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>
-                                                </taxonomy>
-                                              </clade>
-                                            </clade>
-                                          </clade>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">8353</id>
-                                            <scientific_name>Xenopus</scientific_name>
-                                            <rank>genus</rank>
-                                          </taxonomy>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">8355</id>
-                                              <code>XENLA</code>
-                                              <scientific_name>Xenopus laevis</scientific_name>
-                                              <authority>Daudin, 1802</authority>
-                                              <common_name>African clawed frog</common_name>
-                                              <synonym>Bufo laevis</synonym>
-                                              <rank>species</rank>
-                                              <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">8364</id>
-                                              <code>XENTR</code>
-                                              <scientific_name>Xenopus tropicalis</scientific_name>
-                                              <common_name>Western clawed frog</common_name>
-                                              <synonym>Silurana tropicalis</synonym>
-                                              <rank>species</rank>
-                                              <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">7897</id>
-                                          <code>LATCH</code>
-                                          <scientific_name>Latimeria chalumnae</scientific_name>
-                                          <common_name>West Indian ocean coelacanth</common_name>
-                                          <rank>species</rank>
-                                          <uri>http://marinebio.org/upload/Latimeria-chalumnae/1.jpg</uri>
-                                          <uri>http://images.nationalgeographic.com/wpf/media-live/photos/000/005/cache/coelacanth_501_600x450.jpg</uri>
-                                        </taxonomy>
-                                      </clade>
-                                    </clade>
-                                    <clade>
-                                      <name>Teleostei</name>
-                                      <taxonomy>
-                                        <id provider="uniprot">32443</id>
-                                        <scientific_name>Teleostei</scientific_name>
-                                      </taxonomy>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">123368</id>
-                                          <scientific_name>Acanthomorpha</scientific_name>
-                                        </taxonomy>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">32485</id>
-                                            <scientific_name>Percomorpha</scientific_name>
-                                          </taxonomy>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">129949</id>
-                                              <scientific_name>Smegmamorpha</scientific_name>
-                                            </taxonomy>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">32456</id>
-                                                <scientific_name>Atherinomorpha</scientific_name>
-                                              </taxonomy>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">8090</id>
-                                                  <code>ORYLA</code>
-                                                  <scientific_name>Oryzias latipes</scientific_name>
-                                                  <common_name>Medaka fish</common_name>
-                                                  <synonym>Japanese ricefish</synonym>
-                                                  <rank>species</rank>
-                                                  <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>
-                                                </taxonomy>
-                                              </clade>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">8083</id>
-                                                  <code>XIPMA</code>
-                                                  <scientific_name>Xiphophorus maculatus</scientific_name>
-                                                  <authority>Guenther, 1866</authority>
-                                                  <common_name>Southern platyfish</common_name>
-                                                  <synonym>Platypoecilus maculatus</synonym>
-                                                  <rank>species</rank>
-                                                  <uri>http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg</uri>
-                                                </taxonomy>
-                                              </clade>
-                                            </clade>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">69293</id>
-                                                <code>GASAC</code>
-                                                <scientific_name>Gasterosteus aculeatus</scientific_name>
-                                                <common_name>Three-spined stickleback</common_name>
-                                                <rank>species</rank>
-                                                <uri>http://www.jjphoto.dk/fish_archive/freshwater/gasterosteus_aculeatus.jpg</uri>
-                                              </taxonomy>
-                                            </clade>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">31031</id>
-                                              <scientific_name>Tetraodontidae</scientific_name>
-                                              <common_name>puffers</common_name>
-                                              <rank>family</rank>
-                                            </taxonomy>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">31033</id>
-                                                <code>TAKRU</code>
-                                                <scientific_name>Takifugu rubripes</scientific_name>
-                                                <common_name>Japanese pufferfish</common_name>
-                                                <synonym>Fugu rubripes</synonym>
-                                                <rank>species</rank>
-                                                <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>
-                                              </taxonomy>
-                                            </clade>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">99883</id>
-                                                <code>TETNG</code>
-                                                <scientific_name>Tetraodon nigroviridis</scientific_name>
-                                                <common_name>Green puffer</common_name>
-                                                <synonym>Chelonodon nigroviridis</synonym>
-                                                <rank>species</rank>
-                                                <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>
-                                              </taxonomy>
-                                            </clade>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">8128</id>
-                                              <code>ORENI</code>
-                                              <scientific_name>Tilapia nilotica</scientific_name>
-                                              <authority>Linnaeus, 1758</authority>
-                                              <common_name>Nile tilapia</common_name>
-                                              <synonym>Tilapia nilotica</synonym>
-                                              <rank>species</rank>
-                                              <uri>http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">8049</id>
-                                            <code>GADMO</code>
-                                            <scientific_name>Gadus morhua</scientific_name>
-                                            <common_name>Atlantic cod</common_name>
-                                            <rank>species</rank>
-                                            <uri>http://www.marinbi.com/g-morhua.jpg</uri>
-                                          </taxonomy>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">7955</id>
-                                          <code>DANRE</code>
-                                          <scientific_name>Danio rerio</scientific_name>
-                                          <common_name>Zebrafish</common_name>
-                                          <synonym>Brachydanio rerio</synonym>
-                                          <rank>species</rank>
-                                          <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>
-                                        </taxonomy>
-                                      </clade>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">7868</id>
-                                      <code>CALMI</code>
-                                      <scientific_name>Callorhynchus milii</scientific_name>
-                                      <common_name>Australian ghost shark</common_name>
-                                      <synonym>Australian ghost shark</synonym>
-                                      <rank>species</rank>
-                                      <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">7757</id>
-                                    <code>PETMA</code>
-                                    <scientific_name>Petromyzon marinus</scientific_name>
-                                    <common_name>Sea lamprey</common_name>
-                                    <rank>species</rank>
-                                    <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <name>Urochordata</name>
-                                <taxonomy>
-                                  <id provider="uniprot">7712</id>
-                                  <scientific_name>Urochordata</scientific_name>
-                                  <rank>subphylum</rank>
-                                </taxonomy>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">7718</id>
-                                    <scientific_name>Ciona</scientific_name>
-                                    <rank>genus</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">7719</id>
-                                      <code>CIOIN</code>
-                                      <scientific_name>Ciona intestinalis</scientific_name>
-                                      <common_name>Transparent sea squirt</common_name>
-                                      <synonym>Ascidia intestinalis</synonym>
-                                      <rank>species</rank>
-                                      <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>
-                                    </taxonomy>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">51511</id>
-                                      <code>CIOSA</code>
-                                      <scientific_name>Ciona savignyi</scientific_name>
-                                      <common_name>Pacific transparent sea squirt</common_name>
-                                      <rank>species</rank>
-                                      <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="ncbi">34765</id>
-                                    <code>OIKDI</code>
-                                    <scientific_name>Oikopleura dioica</scientific_name>
-                                    <common_name>Tunicate</common_name>
-                                    <rank>species</rank>
-                                    <uri>http://jellieszone.com/images/oikopleura.jpg</uri>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">7739</id>
-                                <code>BRAFL</code>
-                                <scientific_name>Branchiostoma floridae</scientific_name>
-                                <common_name>Florida lancelet</common_name>
-                                <synonym>Amphioxus</synonym>
-                                <rank>species</rank>
-                                <uri>http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg</uri>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <name>Hemichordata &amp; Echinodermata</name>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">7586</id>
-                                <scientific_name>Echinodermata</scientific_name>
-                                <rank>phylum</rank>
-                              </taxonomy>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">133551</id>
-                                  <scientific_name>Eleutherozoa</scientific_name>
-                                  <rank>subphylum</rank>
-                                </taxonomy>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">7674</id>
-                                    <scientific_name>Echinacea</scientific_name>
-                                    <rank>superorder</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">7654</id>
-                                      <code>LYTVA</code>
-                                      <scientific_name>Lytechinus variegatus</scientific_name>
-                                      <common_name>Green sea urchin</common_name>
-                                      <synonym>Variegated urchin</synonym>
-                                      <rank>species</rank>
-                                      <uri>http://imagess3.enature.com/seashore/seashore_l/sc0090_1l.jpg</uri>
-                                    </taxonomy>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">7668</id>
-                                      <code>STRPU</code>
-                                      <scientific_name>Strongylocentrotus purpuratus</scientific_name>
-                                      <common_name>Purple sea urchin</common_name>
-                                      <rank>species</rank>
-                                      <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">46514</id>
-                                    <code>PATMI</code>
-                                    <scientific_name>Patiria miniata</scientific_name>
-                                    <common_name>Bat star</common_name>
-                                    <synonym>Asterina miniata</synonym>
-                                    <rank>species</rank>
-                                    <uri>http://calphotos.berkeley.edu/imgs/256x384/9092_3191/3549/0105.jpeg</uri>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">73431</id>
-                                  <scientific_name>Florometra serratissima</scientific_name>
-                                  <common_name>common feather star</common_name>
-                                  <rank>species</rank>
-                                  <uri>http://www.alaska-in-pictures.com/data/media/1/feather-star-pattern_6081.jpg</uri>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">10224</id>
-                                <code>SACKO</code>
-                                <scientific_name>Saccoglossus kowalevskii</scientific_name>
-                                <authority>Agassiz, 1873</authority>
-                                <common_name>Acorn worm</common_name>
-                                <rank>species</rank>
-                                <uri>http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg</uri>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">33317</id>
-                            <scientific_name>Protostomia</scientific_name>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">1206794</id>
-                              <scientific_name>Ecdysozoa</scientific_name>
-                            </taxonomy>
-                            <reference doi="10.1098/rstb.2007.2243">
-                              <desc>The evolution of the Ecdysozoa</desc>
-                            </reference>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">88770</id>
-                                <scientific_name>Panarthropoda</scientific_name>
-                              </taxonomy>
-                              <clade>
-                                <name>Onychophora &amp; Arthropoda</name>
-                                <reference doi="10.1073/pnas.1105499108">
-                                  <desc>MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda</desc>
-                                </reference>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">6656</id>
-                                    <scientific_name>Arthropoda</scientific_name>
-                                    <rank>phylum</rank>
-                                  </taxonomy>
-                                  <reference doi="10.1098/rspb.2010.0590">
-                                    <desc>A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata</desc>
-                                  </reference>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">197563</id>
-                                      <scientific_name>Mandibulata</scientific_name>
-                                    </taxonomy>
-                                    <reference doi="doi:10.1038/ncomms3485">
-                                      <desc>Arthropod fossil data increase congruence of morphological and molecular phylogenies</desc>
-                                    </reference>
-                                    <reference>
-                                    </reference>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">197562</id>
-                                        <scientific_name>Pancrustacea</scientific_name>
-                                      </taxonomy>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">6960</id>
-                                          <scientific_name>Hexapoda</scientific_name>
-                                          <rank>superclass</rank>
-                                        </taxonomy>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">50557</id>
-                                            <scientific_name>Insecta</scientific_name>
-                                            <common_name>true insects</common_name>
-                                            <rank>class</rank>
-                                          </taxonomy>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">33340</id>
-                                              <scientific_name>Neoptera</scientific_name>
-                                              <rank>subclass</rank>
-                                            </taxonomy>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">33392</id>
-                                                <scientific_name>Endopterygota</scientific_name>
-                                                <rank>infraclass</rank>
-                                              </taxonomy>
-                                              <clade>
-                                                <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>
-                                                <clade>
-                                                  <name>Lepidoptera &amp; Diptera</name>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">7147</id>
-                                                      <scientific_name>Diptera</scientific_name>
-                                                      <rank>order</rank>
-                                                    </taxonomy>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">7215</id>
-                                                        <scientific_name>Drosophila</scientific_name>
-                                                        <common_name>fruit flies</common_name>
-                                                        <rank>genus</rank>
-                                                      </taxonomy>
-                                                      <reference doi="10.1534/genetics.111.126540">
-                                                        <desc>The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research</desc>
-                                                      </reference>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">32341</id>
-                                                          <scientific_name>Sophophora</scientific_name>
-                                                          <rank>subgenus</rank>
-                                                        </taxonomy>
-                                                        <clade>
-                                                          <name>melanogaster &amp; pseudoobscura subgroups</name>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">32346</id>
-                                                              <scientific_name>melanogaster group</scientific_name>
-                                                            </taxonomy>
-                                                            <clade>
-                                                              <taxonomy>
-                                                                <id provider="uniprot">32351</id>
-                                                                <scientific_name>melanogaster subgroup</scientific_name>
-                                                              </taxonomy>
-                                                              <clade>
-                                                                <name>DROSE &amp; DROSI &amp; DROME &amp; DROYA</name>
-                                                                <clade>
-                                                                  <name>DROSE &amp; DROSI &amp; DROME</name>
-                                                                  <clade>
-                                                                    <name>DROSE &amp; DROSI</name>
-                                                                    <clade>
-                                                                      <taxonomy>
-                                                                        <id provider="uniprot">7238</id>
-                                                                        <code>DROSE</code>
-                                                                        <scientific_name>Drosophila sechellia</scientific_name>
-                                                                        <common_name>Fruit fly</common_name>
-                                                                        <rank>species</rank>
-                                                                      </taxonomy>
-                                                                    </clade>
-                                                                    <clade>
-                                                                      <taxonomy>
-                                                                        <id provider="uniprot">7240</id>
-                                                                        <code>DROSI</code>
-                                                                        <scientific_name>Drosophila simulans</scientific_name>
-                                                                        <common_name>Fruit fly</common_name>
-                                                                        <rank>species</rank>
-                                                                      </taxonomy>
-                                                                    </clade>
-                                                                  </clade>
-                                                                  <clade>
-                                                                    <taxonomy>
-                                                                      <id provider="uniprot">7227</id>
-                                                                      <code>DROME</code>
-                                                                      <scientific_name>Drosophila melanogaster</scientific_name>
-                                                                      <common_name>Fruit fly</common_name>
-                                                                      <rank>species</rank>
-                                                                      <uri>http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg</uri>
-                                                                    </taxonomy>
-                                                                  </clade>
-                                                                </clade>
-                                                                <clade>
-                                                                  <taxonomy>
-                                                                    <id provider="uniprot">7245</id>
-                                                                    <code>DROYA</code>
-                                                                    <scientific_name>Drosophila yakuba</scientific_name>
-                                                                    <common_name>Fruit fly</common_name>
-                                                                    <rank>species</rank>
-                                                                  </taxonomy>
-                                                                </clade>
-                                                              </clade>
-                                                              <clade>
-                                                                <taxonomy>
-                                                                  <id provider="uniprot">7220</id>
-                                                                  <code>DROER</code>
-                                                                  <scientific_name>Drosophila erecta</scientific_name>
-                                                                  <common_name>Fruit fly</common_name>
-                                                                  <rank>species</rank>
-                                                                </taxonomy>
-                                                              </clade>
-                                                            </clade>
-                                                            <clade>
-                                                              <taxonomy>
-                                                                <id provider="uniprot">7217</id>
-                                                                <code>DROAN</code>
-                                                                <scientific_name>Drosophila ananassae</scientific_name>
-                                                                <common_name>Fruit fly</common_name>
-                                                                <rank>species</rank>
-                                                              </taxonomy>
-                                                            </clade>
-                                                          </clade>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">32358</id>
-                                                              <scientific_name>pseudoobscura subgroup</scientific_name>
-                                                            </taxonomy>
-                                                            <clade>
-                                                              <taxonomy>
-                                                                <id provider="uniprot">7234</id>
-                                                                <code>DROPE</code>
-                                                                <scientific_name>Drosophila persimilis</scientific_name>
-                                                                <common_name>Fruit fly</common_name>
-                                                                <rank>species</rank>
-                                                              </taxonomy>
-                                                            </clade>
-                                                            <clade>
-                                                              <taxonomy>
-                                                                <id provider="uniprot">46245</id>
-                                                                <code>DROPS</code>
-                                                                <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>
-                                                                <common_name>Fruit fly</common_name>
-                                                                <rank>subspecies</rank>
-                                                                <uri>http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg</uri>
-                                                              </taxonomy>
-                                                            </clade>
-                                                          </clade>
-                                                        </clade>
-                                                        <clade>
-                                                          <taxonomy>
-                                                            <id provider="uniprot">7260</id>
-                                                            <code>DROWI</code>
-                                                            <scientific_name>Drosophila willistoni</scientific_name>
-                                                            <common_name>Fruit fly</common_name>
-                                                            <rank>species</rank>
-                                                          </taxonomy>
-                                                        </clade>
-                                                      </clade>
-                                                      <clade>
-                                                        <name>Drosophila subgenus &amp; Hawaiian Drosophila</name>
-                                                        <clade>
-                                                          <name>Drosophila subgenus</name>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">7230</id>
-                                                              <code>DROMO</code>
-                                                              <scientific_name>Drosophila mojavensis</scientific_name>
-                                                              <common_name>Fruit fly</common_name>
-                                                              <rank>species</rank>
-                                                            </taxonomy>
-                                                          </clade>
-                                                          <clade>
-                                                            <taxonomy>
-                                                              <id provider="uniprot">7244</id>
-                                                              <code>DROVI</code>
-                                                              <scientific_name>Drosophila virilis</scientific_name>
-                                                              <common_name>Fruit fly</common_name>
-                                                              <rank>species</rank>
-                                                            </taxonomy>
-                                                          </clade>
-                                                        </clade>
-                                                        <clade>
-                                                          <taxonomy>
-                                                            <id provider="uniprot">7222</id>
-                                                            <code>DROGR</code>
-                                                            <scientific_name>Drosophila grimshawi</scientific_name>
-                                                            <common_name>Fruit fly</common_name>
-                                                            <synonym>Idiomyia grimshawi</synonym>
-                                                            <rank>species</rank>
-                                                            <uri>http://www.pacificislandbooks.com/fruitf~1.jpg</uri>
-                                                          </taxonomy>
-                                                        </clade>
-                                                      </clade>
-                                                    </clade>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">7157</id>
-                                                        <scientific_name>Culicidae</scientific_name>
-                                                        <common_name>mosquitos</common_name>
-                                                        <rank>family</rank>
-                                                      </taxonomy>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">7159</id>
-                                                          <code>AEDAE</code>
-                                                          <scientific_name>Aedes aegypti</scientific_name>
-                                                          <common_name>Yellowfever mosquito</common_name>
-                                                          <synonym>Culex aegypti</synonym>
-                                                          <rank>species</rank>
-                                                          <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>
-                                                        </taxonomy>
-                                                      </clade>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">7165</id>
-                                                          <code>ANOGA</code>
-                                                          <scientific_name>Anopheles gambiae</scientific_name>
-                                                          <common_name>African malaria mosquito</common_name>
-                                                          <rank>species</rank>
-                                                          <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>
-                                                        </taxonomy>
-                                                      </clade>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">7175</id>
-                                                          <code>CULPI</code>
-                                                          <scientific_name>Culex pipiens</scientific_name>
-                                                          <common_name>House mosquito</common_name>
-                                                          <rank>species</rank>
-                                                          <uri>http://upload.wikimedia.org/wikipedia/commons/3/35/Culex_pipiens_2007-1.jpg</uri>
-                                                        </taxonomy>
-                                                      </clade>
-                                                    </clade>
-                                                  </clade>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">104431</id>
-                                                      <scientific_name>Obtectomera</scientific_name>
-                                                    </taxonomy>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">7091</id>
-                                                        <code>BOMMO</code>
-                                                        <scientific_name>Bombyx mori</scientific_name>
-                                                        <common_name>Silk moth</common_name>
-                                                        <rank>species</rank>
-                                                        <uri>http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg</uri>
-                                                      </taxonomy>
-                                                    </clade>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">13037</id>
-                                                        <code>DANPL</code>
-                                                        <scientific_name>Danaus plexippus</scientific_name>
-                                                        <common_name>Monarch butterfly</common_name>
-                                                        <rank>species</rank>
-                                                        <uri>http://bugguide.net/images/cache/7QFRQQYRJKQ0X0YQM0Z02000U0ORKQR090H07QBRFKNRQQH0P0YRE0YRZQARLQWR70JQG09RYKDQJKCQFKFQJKTQI0.jpg</uri>
-                                                        <uri>http://bugguide.net/images/raw/7RTZXR3Z6RRHKZHH8RVL8RRHMZKHERKHQZLHGRLHPR1LERQH4RCZYL1LGRHH7ZZHER1LGRSH7R6L.jpg</uri>
-                                                      </taxonomy>
-                                                    </clade>
-                                                  </clade>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">7400</id>
-                                                    <scientific_name>Apocrita</scientific_name>
-                                                    <common_name>wasps, ants and bees</common_name>
-                                                  </taxonomy>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">7434</id>
-                                                      <scientific_name>Aculeata</scientific_name>
-                                                      <rank>suborder</rank>
-                                                    </taxonomy>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">36668</id>
-                                                        <scientific_name>Formicidae</scientific_name>
-                                                        <common_name>ants</common_name>
-                                                        <rank>family</rank>
-                                                      </taxonomy>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">143999</id>
-                                                          <scientific_name>Attini</scientific_name>
-                                                          <rank>tribe</rank>
-                                                        </taxonomy>
-                                                        <clade>
-                                                          <taxonomy>
-                                                            <id provider="uniprot">12957</id>
-                                                            <code>ATTCE</code>
-                                                            <scientific_name>Atta cephalotes</scientific_name>
-                                                            <authority>Linnaeus, 1758</authority>
-                                                            <common_name>Leafcutter ant</common_name>
-                                                            <rank>species</rank>
-                                                            <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>
-                                                          </taxonomy>
-                                                        </clade>
-                                                        <clade>
-                                                          <taxonomy>
-                                                            <id provider="uniprot">103372</id>
-                                                            <code>ACREC</code>
-                                                            <scientific_name>Acromyrmex echinatior</scientific_name>
-                                                            <authority>Forel, 1899</authority>
-                                                            <common_name>Panamanian leafcutter ant</common_name>
-                                                            <synonym>Acromyrmex octospinosus echinatior</synonym>
-                                                            <rank>species</rank>
-                                                            <uri>http://hymenopteragenome.org/acromyrmex/sites/hymenopteragenome.org.acromyrmex/files/Acromyrmex_echinatior2.jpg</uri>
-                                                          </taxonomy>
-                                                        </clade>
-                                                      </clade>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">104421</id>
-                                                          <code>CAMFO</code>
-                                                          <scientific_name>Camponotus floridanus</scientific_name>
-                                                          <authority>Buckley, 1866</authority>
-                                                          <common_name>Florida carpenter ant</common_name>
-                                                          <rank>species</rank>
-                                                          <uri>http://bugguide.net/images/cache/5RLH6RRHXRALZZ9LZZ6L3LBLXZBL2RFZHZ9L7ZKH4RDZ3L3Z2RZHKZCLMZKH4R0H6R3Z6RSHMZBL5RRH5ROLKZELLZ.jpg</uri>
-                                                        </taxonomy>
-                                                      </clade>
-                                                    </clade>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">7460</id>
-                                                        <code>APIME</code>
-                                                        <scientific_name>Apis mellifera</scientific_name>
-                                                        <common_name>Honeybee</common_name>
-                                                        <rank>species</rank>
-                                                        <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&amp;_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>
-                                                      </taxonomy>
-                                                    </clade>
-                                                  </clade>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">7425</id>
-                                                      <code>NASVI</code>
-                                                      <scientific_name>Nasonia vitripennis</scientific_name>
-                                                      <common_name>Parasitic wasp</common_name>
-                                                      <rank>species</rank>
-                                                      <uri>http://www.freshpond.org/nasonia.jpg</uri>
-                                                    </taxonomy>
-                                                  </clade>
-                                                </clade>
-                                              </clade>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">7070</id>
-                                                  <code>TRICA</code>
-                                                  <scientific_name>Tribolium castaneum</scientific_name>
-                                                  <common_name>Red flour beetle</common_name>
-                                                  <rank>species</rank>
-                                                  <uri>http://upload.wikimedia.org/wikipedia/commons/d/da/Tribolium_castaneum.jpg</uri>
-                                                </taxonomy>
-                                              </clade>
-                                            </clade>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">33342</id>
-                                                <scientific_name>Paraneoptera</scientific_name>
-                                                <rank>infraclass</rank>
-                                              </taxonomy>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">7524</id>
-                                                  <scientific_name>Hemiptera</scientific_name>
-                                                  <rank>order</rank>
-                                                </taxonomy>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">7029</id>
-                                                    <code>ACYPI</code>
-                                                    <scientific_name>Acyrthosiphon pisum</scientific_name>
-                                                    <common_name>Pea aphid</common_name>
-                                                    <rank>species</rank>
-                                                    <uri>http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">13249</id>
-                                                    <code>RHOPR</code>
-                                                    <scientific_name>Rhodnius prolixus</scientific_name>
-                                                    <common_name>Triatomid bug</common_name>
-                                                    <rank>species</rank>
-                                                    <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                              </clade>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">121224</id>
-                                                  <code>PEDHC</code>
-                                                  <scientific_name>Pediculus humanus subsp. corporis</scientific_name>
-                                                  <common_name>Body louse</common_name>
-                                                  <rank>subspecies</rank>
-                                                  <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg</uri>
-                                                </taxonomy>
-                                              </clade>
-                                            </clade>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">568273</id>
-                                              <scientific_name>Machilis germanica</scientific_name>
-                                              <rank>species</rank>
-                                              <uri>http://www.naturefg.com/images/c-animals/machilis.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">383857</id>
-                                            <scientific_name>Campodea fragilis</scientific_name>
-                                            <rank>species</rank>
-                                            <uri>http://images.wikia.com/insect/images/3/3c/Campodea_fragilis.jpg</uri>
-                                          </taxonomy>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">6657</id>
-                                          <scientific_name>Crustacea</scientific_name>
-                                          <rank>subphylum</rank>
-                                        </taxonomy>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">6658</id>
-                                            <scientific_name>Branchiopoda</scientific_name>
-                                            <rank>class</rank>
-                                          </taxonomy>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">6661</id>
-                                              <code>ARTSF</code>
-                                              <scientific_name>Artemia franciscana</scientific_name>
-                                              <common_name>Brine shrimp</common_name>
-                                              <synonym>Artemia sanfranciscana</synonym>
-                                              <rank>species</rank>
-                                              <uri>http://www.aslo.org/photopost/data/518/medium/8Brine_shrimp.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">6669</id>
-                                              <code>DAPPU</code>
-                                              <scientific_name>Daphnia pulex</scientific_name>
-                                              <common_name>Water flea</common_name>
-                                              <rank>species</rank>
-                                              <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">6706</id>
-                                            <code>HOMAM</code>
-                                            <scientific_name>Homarus americanus</scientific_name>
-                                            <common_name>American lobster</common_name>
-                                            <uri>http://upload.wikimedia.org/wikipedia/commons/5/5e/Lobster.jpg</uri>
-                                          </taxonomy>
-                                        </clade>
-                                      </clade>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">61985</id>
-                                        <scientific_name>Myriapoda</scientific_name>
-                                        <rank>subphylum</rank>
-                                      </taxonomy>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">7553</id>
-                                          <scientific_name>Diplopoda</scientific_name>
-                                          <common_name>millipedes</common_name>
-                                          <rank>class</rank>
-                                        </taxonomy>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">118561</id>
-                                            <scientific_name>Helminthomorpha</scientific_name>
-                                            <rank>subclass</rank>
-                                          </taxonomy>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">364406</id>
-                                              <code>ANTGC</code>
-                                              <scientific_name>Antrokoreana gracilipes</scientific_name>
-                                              <common_name>Troglobite millipede</common_name>
-                                              <rank>species</rank>
-                                            </taxonomy>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">174156</id>
-                                              <code>NARAN</code>
-                                              <scientific_name>Narceus annularis</scientific_name>
-                                              <common_name>Millipede</common_name>
-                                              <rank>species</rank>
-                                              <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">52428</id>
-                                            <scientific_name>Polyxenus lagurus</scientific_name>
-                                            <common_name>bristly millipede</common_name>
-                                            <rank>species</rank>
-                                            <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>
-                                          </taxonomy>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">7540</id>
-                                          <scientific_name>Chilopoda</scientific_name>
-                                          <common_name>centipedes</common_name>
-                                          <rank>class</rank>
-                                        </taxonomy>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">29022</id>
-                                            <code>SCUCO</code>
-                                            <scientific_name>Scutigera coleoptrata</scientific_name>
-                                            <common_name>House centipede</common_name>
-                                            <rank>species</rank>
-                                            <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>
-                                          </taxonomy>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">126957</id>
-                                            <code>STRMM</code>
-                                            <scientific_name>Strigamia maritima</scientific_name>
-                                            <common_name>European centipede</common_name>
-                                            <synonym>Geophilus maritimus</synonym>
-                                            <rank>species</rank>
-                                            <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>
-                                          </taxonomy>
-                                        </clade>
-                                      </clade>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">6843</id>
-                                      <scientific_name>Chelicerata</scientific_name>
-                                      <rank>subphylum</rank>
-                                    </taxonomy>
-                                    <reference doi="10.1016/j.ympev.2009.08.014">
-                                      <desc>A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator)</desc>
-                                    </reference>
-                                    <reference>
-                                    </reference>
-                                    <reference>
-                                    </reference>
-                                    <reference>
-                                    </reference>
-                                    <clade>
-                                      <name>Arachnida &amp; Merostomata</name>
-                                      <taxonomy>
-                                        <id>Sea spider</id>
-                                      </taxonomy>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">6854</id>
-                                          <scientific_name>Arachnida</scientific_name>
-                                          <rank>class</rank>
-                                        </taxonomy>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">6933</id>
-                                            <scientific_name>Acari</scientific_name>
-                                            <common_name>mites &amp; ticks</common_name>
-                                            <rank>subclass</rank>
-                                          </taxonomy>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">6945</id>
-                                              <code>IXOSC</code>
-                                              <scientific_name>Ixodes scapularis</scientific_name>
-                                              <common_name>Black-legged tick</common_name>
-                                              <synonym>Deer tick</synonym>
-                                              <rank>species</rank>
-                                              <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">32264</id>
-                                              <code>TETUR</code>
-                                              <scientific_name>Tetranychus urticae</scientific_name>
-                                              <common_name>Two-spotted spider mite</common_name>
-                                              <rank>species</rank>
-                                              <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Tetranychus-urticae.jpg/472px-Tetranychus-urticae.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">34649</id>
-                                            <code>MESMA</code>
-                                            <scientific_name>Mesobuthus martensii</scientific_name>
-                                            <authority>Karsch, 1879</authority>
-                                            <common_name>Manchurian scorpion</common_name>
-                                            <synonym>Buthus martensi</synonym>
-                                            <synonym>Buthus martensii</synonym>
-                                            <rank>species</rank>
-                                            <uri>http://www.ntnu.no/ub/scorpion-files/m_martensii1.jpg</uri>
-                                          </taxonomy>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">6850</id>
-                                          <code>LIMPO</code>
-                                          <scientific_name>Limulus polyphemus</scientific_name>
-                                          <common_name>Atlantic horseshoe crab</common_name>
-                                          <rank>species</rank>
-                                          <uri>http://www.biopix.eu/photosmedium/Limulus%20polyphemus%2000008.JPG</uri>
-                                        </taxonomy>
-                                      </clade>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">258330</id>
-                                        <scientific_name>Ammothea hilgendorfi</scientific_name>
-                                        <rank>species</rank>
-                                        <uri>http://nathistoc.bio.uci.edu/Pycnogonida/DSCF0073b.jpg</uri>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">488523</id>
-                                    <scientific_name>Euperipatoides kanangrensis</scientific_name>
-                                    <authority>Reid, 1996</authority>
-                                    <rank>species</rank>
-                                    <uri>http://content60.eol.org/content/2012/04/05/01/26600_580_360.jpg</uri>
-                                    <uri>http://upload.wikimedia.org/wikipedia/commons/6/67/Euperipatoides_kanangrensis_crop.jpg</uri>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">232323</id>
-                                  <code>HYPDU</code>
-                                  <scientific_name>Hypsibius dujardini</scientific_name>
-                                  <common_name>Water bear</common_name>
-                                  <synonym>Macrobiotus dujardini</synonym>
-                                  <rank>species</rank>
-                                  <uri>http://content62.eol.org/content/2013/08/23/23/61018_580_360.jpg</uri>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">6231</id>
-                                <scientific_name>Nematoda</scientific_name>
-                                <common_name>roundworms</common_name>
-                                <rank>phylum</rank>
-                              </taxonomy>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">119089</id>
-                                  <scientific_name>Chromadorea</scientific_name>
-                                  <rank>class</rank>
-                                </taxonomy>
-                                <reference doi="10.1038/32160">
-                                </reference>
-                                <clade>
-                                  <name>nematode Clade V</name>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">6237</id>
-                                      <scientific_name>Caenorhabditis</scientific_name>
-                                      <rank>genus</rank>
-                                    </taxonomy>
-                                    <reference doi="10.1073/pnas.0403094101">
-                                      <desc>Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss</desc>
-                                    </reference>
-                                    <clade>
-                                      <name>CAEBR &amp; CAERE &amp; CAEBE &amp; CAEEL</name>
-                                      <clade>
-                                        <name>CAEBR &amp; CAERE &amp; CAEBE</name>
-                                        <clade>
-                                          <name>CAEBR &amp; CAERE</name>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">6238</id>
-                                              <code>CAEBR</code>
-                                              <scientific_name>Caenorhabditis briggsae</scientific_name>
-                                              <rank>species</rank>
-                                              <uri>http://www.life.umd.edu/biology/haag/briggsae_herm.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">31234</id>
-                                              <code>CAERE</code>
-                                              <scientific_name>Caenorhabditis remanei</scientific_name>
-                                              <synonym>Caenorhabditis vulgaris</synonym>
-                                              <rank>species</rank>
-                                              <uri>http://lemur.amu.edu.pl/share/php/mirnest_1.0/species_images/Caenorhabditis_remanei.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">135651</id>
-                                            <code>CAEBE</code>
-                                            <scientific_name>Caenorhabditis brenneri</scientific_name>
-                                            <common_name>Nematode worm</common_name>
-                                            <synonym>Caenorhabditis CB5161</synonym>
-                                            <rank>species</rank>
-                                          </taxonomy>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">6239</id>
-                                          <code>CAEEL</code>
-                                          <scientific_name>Caenorhabditis elegans</scientific_name>
-                                          <rank>species</rank>
-                                          <uri>http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif</uri>
-                                        </taxonomy>
-                                      </clade>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">281687</id>
-                                        <code>CAEJA</code>
-                                        <scientific_name>Caenorhabditis japonica</scientific_name>
-                                        <rank>species</rank>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">54126</id>
-                                      <code>PRIPA</code>
-                                      <scientific_name>Pristionchus pacificus</scientific_name>
-                                      <common_name>Parasitic nematode</common_name>
-                                      <rank>species</rank>
-                                      <uri>http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg</uri>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">6296</id>
-                                    <scientific_name>Onchocercidae</scientific_name>
-                                    <rank>family</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">6279</id>
-                                      <code>BRUMA</code>
-                                      <scientific_name>Brugia malayi</scientific_name>
-                                      <common_name>Filarial nematode worm</common_name>
-                                      <rank>species</rank>
-                                      <uri>http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG</uri>
-                                    </taxonomy>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">6293</id>
-                                      <code>WUCBA</code>
-                                      <scientific_name>Wuchereria bancrofti</scientific_name>
-                                      <rank>species</rank>
-                                      <uri>http://upload.wikimedia.org/wikipedia/commons/a/a9/Wuchereria_bancrofti_1_DPDX.JPG</uri>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">6334</id>
-                                  <code>TRISP</code>
-                                  <scientific_name>Trichinella spiralis</scientific_name>
-                                  <common_name>Trichina worm</common_name>
-                                  <rank>species</rank>
-                                  <uri>http://upload.wikimedia.org/wikipedia/commons/e/e8/Trichinella_larv1_DPDx.JPG</uri>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">1206795</id>
-                              <scientific_name>Lophotrochozoa</scientific_name>
-                            </taxonomy>
-                            <clade>
-                              <name>Annelida &amp; Mollusca</name>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">6447</id>
-                                  <scientific_name>Mollusca</scientific_name>
-                                  <rank>phylum</rank>
-                                </taxonomy>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">6448</id>
-                                    <scientific_name>Gastropoda</scientific_name>
-                                    <rank>class</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">6500</id>
-                                      <code>APLCA</code>
-                                      <scientific_name>Aplysia californica</scientific_name>
-                                      <common_name>California sea hare</common_name>
-                                      <rank>species</rank>
-                                      <uri>http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg</uri>
-                                    </taxonomy>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">225164</id>
-                                      <code>LOTGI</code>
-                                      <scientific_name>Lottia gigantea</scientific_name>
-                                      <common_name>Owl limpet</common_name>
-                                      <rank>species</rank>
-                                      <uri>http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg</uri>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">6545</id>
-                                    <scientific_name>Pteriomorphia</scientific_name>
-                                    <synonym>Pteriomorpha</synonym>
-                                    <rank>subclass</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">29159</id>
-                                      <code>CRAGI</code>
-                                      <scientific_name>Crassostrea gigas</scientific_name>
-                                      <authority>Thunberg, 1793</authority>
-                                      <common_name>Pacific oyster</common_name>
-                                      <synonym>Crassotrea gigas</synonym>
-                                      <synonym>Crassostrea angulata</synonym>
-                                      <synonym>Ostrea gigas</synonym>
-                                      <rank>species</rank>
-                                      <uri>http://www.marlin.ac.uk/imgs/o_cragig.jpg</uri>
-                                    </taxonomy>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">50426</id>
-                                      <code>PINFU</code>
-                                      <scientific_name>Pinctada fucata</scientific_name>
-                                      <common_name>Pearl oyster</common_name>
-                                      <rank>species</rank>
-                                      <uri>http://www.elrincondelmalacologo.com/Web%20fotos%20marinos%20no%20gasteropodos/Fotos%20coleccion/Pteriidae/Pinctada%20fucata.jpg</uri>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">6340</id>
-                                  <scientific_name>Annelida</scientific_name>
-                                  <rank>phylum</rank>
-                                </taxonomy>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">283909</id>
-                                    <code>CAPTE</code>
-                                    <scientific_name>Capitella teleta</scientific_name>
-                                    <authority>Blake, Grassle &amp; Eckelbarger, 2009</authority>
-                                    <common_name>Polychaete worm</common_name>
-                                    <synonym>Capitella sp. I</synonym>
-                                    <rank>species</rank>
-                                    <uri>http://genome.jgi-psf.org/Capca1/capitella.jpg</uri>
-                                  </taxonomy>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">6412</id>
-                                    <code>HELRO</code>
-                                    <scientific_name>Helobdella robusta</scientific_name>
-                                    <common_name>Californian leech</common_name>
-                                    <rank>species</rank>
-                                    <uri>http://genome.jgi-psf.org/Helro1/Helro_leech.jpg</uri>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">6157</id>
-                                <scientific_name>Platyhelminthes</scientific_name>
-                                <rank>phylum</rank>
-                              </taxonomy>
-                              <clade>
-                                <taxonomy>
-                                  <scientific_name>Neodermata</scientific_name>
-                                </taxonomy>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">6179</id>
-                                    <scientific_name>Digenea</scientific_name>
-                                    <common_name>flukes</common_name>
-                                    <rank>subclass</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">6183</id>
-                                      <code>SCHMA</code>
-                                      <scientific_name>Schistosoma mansoni</scientific_name>
-                                      <common_name>Blood fluke</common_name>
-                                      <rank>species</rank>
-                                      <uri>http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg</uri>
-                                    </taxonomy>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">79923</id>
-                                      <code>CLOSI</code>
-                                      <scientific_name>Clonorchis sinensi</scientific_name>
-                                      <authority>Cobbold, 1875</authority>
-                                      <common_name>Chinese liver fluke</common_name>
-                                      <rank>species</rank>
-                                      <uri>http://people.bethel.edu/~kisrob/VirtualBiology/Planaria/Chlonorchis_sinensis.jpg</uri>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">6211</id>
-                                    <code>ECHMU</code>
-                                    <scientific_name>Echinococcus multilocularis</scientific_name>
-                                    <rank>species</rank>
-                                    <uri>http://www.stanford.edu/group/parasites/ParaSites2003/Echinococcus/images/Echino_generalinfo.jpg</uri>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">79327</id>
-                                  <code>SCHMD</code>
-                                  <scientific_name>Schmidtea mediterranea</scientific_name>
-                                  <common_name>Freshwater planarian flatworm</common_name>
-                                  <rank>species</rank>
-                                  <uri>http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg</uri>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                          </clade>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <name>Cnidaria</name>
-                        <taxonomy>
-                          <id provider="uniprot">6073</id>
-                          <scientific_name>Cnidaria</scientific_name>
-                          <rank>phylum</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">6102</id>
-                            <scientific_name>Hexacorallia</scientific_name>
-                            <synonym>Ceriantipatharia</synonym>
-                            <synonym>Zoantharia</synonym>
-                            <rank>subclass</rank>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">70779</id>
-                              <code>ACRDI</code>
-                              <scientific_name>Acropora digitifera</scientific_name>
-                              <common_name>Staghorn coral</common_name>
-                              <rank>species</rank>
-                              <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>
-                            </taxonomy>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">45351</id>
-                              <code>NEMVE</code>
-                              <scientific_name>Nematostella vectensis</scientific_name>
-                              <common_name>Starlet sea anemone</common_name>
-                              <rank>species</rank>
-                              <uri>http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg</uri>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">6087</id>
-                            <code>HYDVU</code>
-                            <scientific_name>Hydra vulgaris</scientific_name>
-                            <authority>Pallas, 1766</authority>
-                            <common_name>Hydra</common_name>
-                            <synonym>Hydra attenuata</synonym>
-                            <synonym>Hydra magnipapillata</synonym>
-                            <rank>species</rank>
-                            <uri>http://www.nig.ac.jp/labs/OntoGen/A10.jpg</uri>
-                            <uri>http://upload.wikimedia.org/wikipedia/commons/1/15/Hydra_biology.jpg</uri>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">10228</id>
-                        <code>TRIAD</code>
-                        <scientific_name>Trichoplax adhaerens</scientific_name>
-                        <synonym>Trichoplax reptans</synonym>
-                        <rank>species</rank>
-                        <uri>http://genome.jgi-psf.org/Triad1/placozoan_signorovitch.jpg</uri>
-                      </taxonomy>
-                      <reference doi="10.1073/pnas.0602076103">
-                      </reference>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">27923</id>
-                      <code>MNELE</code>
-                      <scientific_name>Mnemiopsis leidyi</scientific_name>
-                      <authority>A. gassiz, 1865</authority>
-                      <common_name>Sea walnut</common_name>
-                      <synonym>Warty comb jellyfish</synonym>
-                      <rank>species</rank>
-                      <uri>http://images.marinespecies.org/resized/12797_mnemiopsis-leidyi.jpg</uri>
-                      <uri>http://i.livescience.com/images/i/000/014/544/original/mnemiopsis-leidyi-jellyfish-101014-02.jpg</uri>
-                    </taxonomy>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">400682</id>
-                      <code>AMPQE</code>
-                      <scientific_name>Amphimedon queenslandica</scientific_name>
-                      <authority>Hooper &amp; Van Soest, 2006</authority>
-                      <common_name>Sponge</common_name>
-                      <synonym>Reniera sp. JGI-2005</synonym>
-                      <rank>species</rank>
-                      <uri>http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg</uri>
-                    </taxonomy>
-                  </clade>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">81524</id>
-                    <scientific_name>Codonosigidae</scientific_name>
-                    <rank>family</rank>
-                  </taxonomy>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">81824</id>
-                      <code>MONBE</code>
-                      <scientific_name>Monosiga brevicollis</scientific_name>
-                      <common_name>Choanoflagellate</common_name>
-                      <rank>species</rank>
-                      <uri>http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg</uri>
-                    </taxonomy>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">946362</id>
-                      <code>SALS5</code>
-                      <scientific_name>Salpingoeca rosetta</scientific_name>
-                      <synonym>Proterospongia sp. ATCC 50818</synonym>
-                      <synonym>Salpingoeca sp. ATCC 50818</synonym>
-                      <synonym>Proterospongia sp. (strain ATCC 50818 / BSB-021)</synonym>
-                      <rank>species</rank>
-                      <uri>http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg</uri>
-                    </taxonomy>
-                  </clade>
-                </clade>
-              </clade>
-              <clade>
-                <name>Ichthyophonida &amp; Filasterea</name>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">198625</id>
-                    <scientific_name>Ichthyophonida</scientific_name>
-                    <rank>order</rank>
-                  </taxonomy>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">4881</id>
-                      <code>AMOPA</code>
-                      <scientific_name>Amoebidium parasiticum</scientific_name>
-                      <rank>species</rank>
-                      <uri>http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg</uri>
-                    </taxonomy>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">72019</id>
-                      <code>SARXX</code>
-                      <scientific_name>Sphaeroforma arctica</scientific_name>
-                      <rank>species</rank>
-                      <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>
-                    </taxonomy>
-                  </clade>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <scientific_name>Filasterea</scientific_name>
-                  </taxonomy>
-                  <reference doi="10.1371/journal.pone.0002098">
-                  </reference>
-                  <reference>
-                  </reference>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">595528</id>
-                      <code>CAPO3</code>
-                      <scientific_name>Capsaspora owczarzaki (strain ATCC 30864)</scientific_name>
-                      <uri>http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg</uri>
-                    </taxonomy>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">134558</id>
-                      <scientific_name>Ministeria vibrans</scientific_name>
-                      <rank>species</rank>
-                      <uri>http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg</uri>
-                    </taxonomy>
-                  </clade>
-                </clade>
-              </clade>
-            </clade>
-            <clade>
-              <taxonomy>
-                <scientific_name>Holomycota</scientific_name>
-                <synonym>Nucletmycea</synonym>
-              </taxonomy>
-              <reference doi="10.1186/1471-2148-9-272">
-                <desc>Phylogenomic analyses predict sistergroup relationship of nucleariids and Fungi and paraphyly of zygomycetes with significant support</desc>
-              </reference>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">4751</id>
-                  <scientific_name>Fungi</scientific_name>
-                  <rank>kingdom</rank>
-                </taxonomy>
-                <reference doi="10.1186/1741-7007-10-47">
-                  <desc>Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi</desc>
-                </reference>
-                <clade>
-                  <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>
-                  <clade>
-                    <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>
-                    <clade>
-                      <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>
-                      <clade>
-                        <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>
-                        <clade>
-                          <name>Dikarya &amp; Mucoromycotina</name>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">451864</id>
-                              <scientific_name>Dikarya</scientific_name>
-                              <rank>subkingdom</rank>
-                            </taxonomy>
-                            <reference doi="10.1038/nature05110">
-                            </reference>
-                            <reference>
-                            </reference>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">4890</id>
-                                <scientific_name>Ascomycota</scientific_name>
-                                <rank>phylum</rank>
-                              </taxonomy>
-                              <clade>
-                                <name>Pezizomycotina &amp; Saccharomycetales</name>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">147538</id>
-                                    <scientific_name>Pezizomycotina</scientific_name>
-                                    <synonym>Euascomycota</synonym>
-                                    <rank>subphylum</rank>
-                                  </taxonomy>
-                                  <reference doi="0.3852/mycologia.98.6.1018">
-                                    <desc>A five-gene phylogeny of Pezizomycotina</desc>
-                                  </reference>
-                                  <reference>
-                                  </reference>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">716546</id>
-                                      <scientific_name>Leotiomyceta</scientific_name>
-                                    </taxonomy>
-                                    <clade>
-                                      <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>
-                                      <clade>
-                                        <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>
-                                        <clade>
-                                          <name>Sordariomyceta &amp; Lecanoromycetes</name>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">715989</id>
-                                              <scientific_name>Sordariomyceta</scientific_name>
-                                            </taxonomy>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">147550</id>
-                                                <scientific_name>Sordariomycetes</scientific_name>
-                                                <rank>class</rank>
-                                              </taxonomy>
-                                              <clade>
-                                                <name>Magnaporthales &amp; Hypocreales</name>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">5125</id>
-                                                    <scientific_name>Hypocreales</scientific_name>
-                                                    <rank>order</rank>
-                                                  </taxonomy>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">398408</id>
-                                                      <code>AALXX</code>
-                                                      <scientific_name>Acremonium alcalophilum</scientific_name>
-                                                      <rank>species</rank>
-                                                      <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>
-                                                    </taxonomy>
-                                                  </clade>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">229533</id>
-                                                      <code>GIBZE</code>
-                                                      <scientific_name>Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)</scientific_name>
-                                                      <common_name>Wheat head blight fungus</common_name>
-                                                      <synonym>Fusarium graminearum</synonym>
-                                                      <synonym>Gibberella zeae PH-1</synonym>
-                                                      <rank>strain</rank>
-                                                      <uri>http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg</uri>
-                                                    </taxonomy>
-                                                  </clade>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">413071</id>
-                                                      <code>HYPVG</code>
-                                                      <scientific_name>Hypocrea virens (strain Gv29-8 / FGSC 10586)</scientific_name>
-                                                      <common_name>Gliocladium virens</common_name>
-                                                      <synonym>Trichoderma virens</synonym>
-                                                      <synonym>Gliocladium flavofuscum</synonym>
-                                                      <synonym>Trichoderma virens Gv29-8</synonym>
-                                                      <synonym>Gliocladium virens</synonym>
-                                                      <rank>strain</rank>
-                                                      <uri>http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg</uri>
-                                                    </taxonomy>
-                                                  </clade>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">148305</id>
-                                                    <code>MAGGR</code>
-                                                    <scientific_name>Magnaporthe grisea</scientific_name>
-                                                    <common_name>Rice blast fungus</common_name>
-                                                    <synonym>Pyricularia grisea</synonym>
-                                                    <rank>species</rank>
-                                                    <uri>http://www.forestryimages.org/images/768x512/5369002.jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                              </clade>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">5139</id>
-                                                  <scientific_name>Sordariales</scientific_name>
-                                                  <rank>order</rank>
-                                                </taxonomy>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">35718</id>
-                                                    <scientific_name>Chaetomiaceae</scientific_name>
-                                                    <rank>family</rank>
-                                                  </taxonomy>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">35719</id>
-                                                      <scientific_name>Thielavia</scientific_name>
-                                                      <rank>genus</rank>
-                                                    </taxonomy>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">573729</id>
-                                                        <code>THIHA</code>
-                                                        <scientific_name>Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799)</scientific_name>
-                                                        <authority>(Apinis) Oorschot 1977</authority>
-                                                        <synonym>Sporotrichum thermophilum</synonym>
-                                                        <synonym>Myceliophthora thermophila</synonym>
-                                                        <rank>species</rank>
-                                                        <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>
-                                                      </taxonomy>
-                                                    </clade>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">578455</id>
-                                                        <code>THITE</code>
-                                                        <scientific_name>Thielavia terrestris (strain ATCC 38088 / NRRL 8126)</scientific_name>
-                                                        <synonym>Acremonium alabamense</synonym>
-                                                        <synonym>Thielavia terrestris NRRL 8126</synonym>
-                                                        <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>
-                                                      </taxonomy>
-                                                    </clade>
-                                                  </clade>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">306901</id>
-                                                      <code>CHAGB</code>
-                                                      <scientific_name>Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)</scientific_name>
-                                                      <authority>Kunze 1817</authority>
-                                                      <common_name>Soil fungus</common_name>
-                                                      <rank>strain</rank>
-                                                    </taxonomy>
-                                                  </clade>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">367110</id>
-                                                    <code>NEUCR</code>
-                                                    <scientific_name>Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)</scientific_name>
-                                                    <rank>strain</rank>
-                                                  </taxonomy>
-                                                </clade>
-                                              </clade>
-                                            </clade>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">147548</id>
-                                                <scientific_name>Leotiomycetes</scientific_name>
-                                                <rank>class</rank>
-                                              </taxonomy>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">28983</id>
-                                                  <scientific_name>Sclerotiniaceae</scientific_name>
-                                                  <rank>family</rank>
-                                                </taxonomy>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">999810</id>
-                                                    <code>BOTF4</code>
-                                                    <scientific_name>Botryotinia fuckeliana (strain T4)</scientific_name>
-                                                    <common_name>Noble rot fungus</common_name>
-                                                    <synonym>Botrytis cinerea</synonym>
-                                                    <rank>strain</rank>
-                                                  </taxonomy>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">665079</id>
-                                                    <code>SCLS1</code>
-                                                    <scientific_name>Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)</scientific_name>
-                                                    <common_name>White mold</common_name>
-                                                    <synonym>Whetzelinia sclerotiorum</synonym>
-                                                    <rank>strain</rank>
-                                                  </taxonomy>
-                                                </clade>
-                                              </clade>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">78148</id>
-                                                  <scientific_name>Oidiodendron maius</scientific_name>
-                                                  <rank>species</rank>
-                                                </taxonomy>
-                                              </clade>
-                                            </clade>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">388435</id>
-                                              <scientific_name>Lecanoromycetidae</scientific_name>
-                                              <rank>subclass</rank>
-                                            </taxonomy>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">27339</id>
-                                                <scientific_name>Cladonia grayi</scientific_name>
-                                                <synonym>Cladonia grayi Merr</synonym>
-                                                <rank>species</rank>
-                                                <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>
-                                              </taxonomy>
-                                            </clade>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">107463</id>
-                                                <scientific_name>Xanthoria parietina</scientific_name>
-                                                <rank>species</rank>
-                                                <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>
-                                              </taxonomy>
-                                            </clade>
-                                          </clade>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">147541</id>
-                                            <scientific_name>Dothideomycetes</scientific_name>
-                                            <common_name>bitunicate ascomycetes</common_name>
-                                            <rank>class</rank>
-                                          </taxonomy>
-                                          <reference doi="10.3114/sim.2009.64.01">
-                                            <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>
-                                          </reference>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">451867</id>
-                                              <scientific_name>Dothideomycetidae</scientific_name>
-                                              <rank>subclass</rank>
-                                            </taxonomy>
-                                            <reference doi="10.3852/mycologia.98.6.1041">
-                                              <desc>A multigene phylogeny of the Dothideomycetes using four nuclear loci</desc>
-                                            </reference>
-                                            <reference>
-                                            </reference>
-                                            <reference>
-                                            </reference>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">134362</id>
-                                                <scientific_name>Capnodiales</scientific_name>
-                                                <rank>order</rank>
-                                              </taxonomy>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">41254</id>
-                                                  <scientific_name>Mycosphaerella</scientific_name>
-                                                  <rank>genus</rank>
-                                                </taxonomy>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">83344</id>
-                                                    <code>PFIXX</code>
-                                                    <scientific_name>Pseudocercospora fijiensis</scientific_name>
-                                                    <synonym>Mycosphaerella fijiensis</synonym>
-                                                    <rank>species</rank>
-                                                  </taxonomy>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">336722</id>
-                                                    <code>MYCGM</code>
-                                                    <scientific_name>Mycosphaerella graminicola (strain CBS 115943 / IPO323)</scientific_name>
-                                                    <common_name>Speckled leaf blotch fungus</common_name>
-                                                    <synonym>Zymoseptoria tritici IPO323</synonym>
-                                                    <synonym>Mycosphaerella graminicola IPO323</synonym>
-                                                    <synonym>Septoria tritici</synonym>
-                                                    <rank>strain</rank>
-                                                  </taxonomy>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">64363</id>
-                                                    <code>MYCPJ</code>
-                                                    <scientific_name>Mycosphaerella pini</scientific_name>
-                                                    <common_name>Red band needle blight disease fungus</common_name>
-                                                    <synonym>Dothistroma septosporum</synonym>
-                                                    <synonym>Dothistroma pini</synonym>
-                                                    <rank>species</rank>
-                                                  </taxonomy>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">692275</id>
-                                                    <code>SPHMS</code>
-                                                    <scientific_name>Sphaerulina musiva (strain SO2202)</scientific_name>
-                                                    <common_name>Poplar stem canker fungus</common_name>
-                                                    <synonym>Septoria musiva</synonym>
-                                                    <synonym>Mycosphaerella populorum SO2202</synonym>
-                                                    <synonym>Septoria musiva SO2202</synonym>
-                                                    <synonym>Sphaerulina musiva SO2202</synonym>
-                                                    <rank>strain</rank>
-                                                    <uri>http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                              </clade>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">430998</id>
-                                                  <code>BCOXX</code>
-                                                  <scientific_name>Baudoinia compniacensis</scientific_name>
-                                                  <common_name>Angels&apos; Share fungus</common_name>
-                                                  <synonym>Torula compniacensis</synonym>
-                                                  <rank>species</rank>
-                                                  <uri>http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg</uri>
-                                                </taxonomy>
-                                              </clade>
-                                            </clade>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">5580</id>
-                                                <code>AURPU</code>
-                                                <scientific_name>Aureobasidium pullulans</scientific_name>
-                                                <common_name>Black yeast</common_name>
-                                                <synonym>Pullularia pullulans</synonym>
-                                                <rank>species</rank>
-                                              </taxonomy>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">178873</id>
-                                                  <code>APPXX</code>
-                                                  <scientific_name>Aureobasidium pullulans var. pullulans</scientific_name>
-                                                  <rank>varietas</rank>
-                                                </taxonomy>
-                                              </clade>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">46634</id>
-                                                  <code>APMXX</code>
-                                                  <scientific_name>Aureobasidium pullulans var. melanogenum</scientific_name>
-                                                  <rank>varietas</rank>
-                                                  <uri>http://genome.jgi-psf.org/public/Aurpu_var_mel1/Aurpu_var_mel1_P1010309ApM+(2).JPG</uri>
-                                                </taxonomy>
-                                              </clade>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">1042127</id>
-                                                  <code>APSXX</code>
-                                                  <scientific_name>Aureobasidium pullulans var. subglaciale</scientific_name>
-                                                  <synonym>Aureobasidium pullulans var. nov. PZ-2008</synonym>
-                                                  <rank>varietas</rank>
-                                                </taxonomy>
-                                              </clade>
-                                            </clade>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">715340</id>
-                                              <scientific_name>Pleosporineae</scientific_name>
-                                              <rank>suborder</rank>
-                                            </taxonomy>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">28556</id>
-                                                <scientific_name>Pleosporaceae</scientific_name>
-                                                <rank>family</rank>
-                                              </taxonomy>
-                                              <clade>
-                                                <name>Cochliobolus &amp; Setosphaeria</name>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">45130</id>
-                                                    <code>COCSA</code>
-                                                    <scientific_name>Cochliobolus sativus</scientific_name>
-                                                    <synonym>Bipolaris sorokiniana</synonym>
-                                                    <rank>species</rank>
-                                                    <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">93612</id>
-                                                    <code>SETTU</code>
-                                                    <scientific_name>Setosphaeria turcica</scientific_name>
-                                                    <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>
-                                                    <common_name>Northern corn leaf blight disease fungus</common_name>
-                                                    <synonym>Exserohilum turcicum</synonym>
-                                                    <synonym>Helminthosporium turcicum</synonym>
-                                                    <rank>species</rank>
-                                                  </taxonomy>
-                                                </clade>
-                                              </clade>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">426418</id>
-                                                  <code>PYRTR</code>
-                                                  <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>
-                                                  <common_name>Wheat tan spot fungus</common_name>
-                                                  <synonym>Drechslera tritici-repentis</synonym>
-                                                  <rank>strain</rank>
-                                                </taxonomy>
-                                              </clade>
-                                            </clade>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">321614</id>
-                                                <code>PHANO</code>
-                                                <scientific_name>Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)</scientific_name>
-                                                <common_name>Glume blotch fungus</common_name>
-                                                <synonym>Septoria nodorum</synonym>
-                                                <rank>strain</rank>
-                                              </taxonomy>
-                                            </clade>
-                                          </clade>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">28568</id>
-                                          <scientific_name>Trichocomaceae</scientific_name>
-                                          <rank>family</rank>
-                                        </taxonomy>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">5052</id>
-                                            <scientific_name>Aspergillus</scientific_name>
-                                            <rank>genus</rank>
-                                          </taxonomy>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">332952</id>
-                                              <code>ASPFN</code>
-                                              <scientific_name>Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)</scientific_name>
-                                              <synonym>Aspergillus flavus NRRL3357</synonym>
-                                              <rank>strain</rank>
-                                              <uri>http://www.jhunewsletter.com/wp-content/uploads/2012/11/b8fungi.jpeg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">425011</id>
-                                              <code>ASPNC</code>
-                                              <scientific_name>Aspergillus niger (strain CBS 513.88 / FGSC A1513)</scientific_name>
-                                              <synonym>Aspergillus niger CBS 513.88</synonym>
-                                              <rank>strain</rank>
-                                              <uri>http://www.vetmed.wisc.edu/students/vetmycology/15.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">344612</id>
-                                              <code>ASPCL</code>
-                                              <scientific_name>Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)</scientific_name>
-                                              <synonym>Aspergillus clavatus NRRL 1</synonym>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                        <clade>
-                                          <name>Neosartorya &amp; Emericella</name>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">227321</id>
-                                              <code>EMENI</code>
-                                              <scientific_name>Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)</scientific_name>
-                                              <authority>Vuill. 1927</authority>
-                                              <synonym>Aspergillus nidulans</synonym>
-                                              <rank>strain</rank>
-                                            </taxonomy>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">331117</id>
-                                              <code>NEOFI</code>
-                                              <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>
-                                              <synonym>Aspergillus fischerianus</synonym>
-                                              <rank>strain</rank>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                      </clade>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">33183</id>
-                                        <scientific_name>Onygenales</scientific_name>
-                                        <rank>order</rank>
-                                      </taxonomy>
-                                      <reference>
-                                        <desc>The Ajellomycetaceae, a new family of vertebrate-associated Onygenales</desc>
-                                      </reference>
-                                      <reference>
-                                      </reference>
-                                      <clade>
-                                        <name>mitosporic Onygenales &amp; Onygenaceae</name>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">246410</id>
-                                            <code>COCIM</code>
-                                            <scientific_name>Coccidioides immitis (strain RS)</scientific_name>
-                                            <common_name>Valley fever fungus</common_name>
-                                            <synonym>Coccidioides immitis RS</synonym>
-                                          </taxonomy>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">336963</id>
-                                            <code>UNCRE</code>
-                                            <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>
-                                            <rank>strain</rank>
-                                          </taxonomy>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">447093</id>
-                                          <code>AJECG</code>
-                                          <scientific_name>Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432)</scientific_name>
-                                          <common_name>Darling&apos;s disease fungus</common_name>
-                                          <synonym>Histoplasma capsulatum</synonym>
-                                        </taxonomy>
-                                      </clade>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">656061</id>
-                                      <code>TUBMM</code>
-                                      <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>
-                                      <common_name>Perigord black truffle</common_name>
-                                      <synonym>Tuber melanosporum Mel28</synonym>
-                                      <rank>strain</rank>
-                                      <uri>http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg</uri>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">4892</id>
-                                    <scientific_name>Saccharomycetales</scientific_name>
-                                    <common_name>budding yeasts</common_name>
-                                    <rank>order</rank>
-                                  </taxonomy>
-                                  <reference doi="10.1186/1471-2148-6-99">
-                                    <desc>A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis</desc>
-                                  </reference>
-                                  <reference>
-                                  </reference>
-                                  <clade>
-                                    <name>mitosporic Saccharomycetales &amp; Debaryomycetaceae &amp; Saccharomycetaceae</name>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">4893</id>
-                                        <scientific_name>Saccharomycetaceae</scientific_name>
-                                        <rank>family</rank>
-                                      </taxonomy>
-                                      <clade>
-                                        <name>Naumovozyma &amp; Saccharomyces</name>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">1064592</id>
-                                            <code>NAUCC</code>
-                                            <scientific_name>Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630)</scientific_name>
-                                            <common_name>Yeast</common_name>
-                                            <synonym>Saccharomyces castellii</synonym>
-                                            <rank>strain</rank>
-                                          </taxonomy>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">559292</id>
-                                            <code>YEAST</code>
-                                            <scientific_name>Saccharomyces cerevisiae (strain ATCC 204508 / S288c)</scientific_name>
-                                            <common_name>Baker&apos;s yeast</common_name>
-                                            <rank>strain</rank>
-                                          </taxonomy>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <name>Eremothecium &amp; Kluyveromyces</name>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">284590</id>
-                                            <code>KLULA</code>
-                                            <scientific_name>Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)</scientific_name>
-                                            <common_name>Yeast</common_name>
-                                            <synonym>Candida sphaerica</synonym>
-                                            <synonym>Kluyveromyces lactis NRRL Y-1140</synonym>
-                                          </taxonomy>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">284811</id>
-                                            <code>ASHGO</code>
-                                            <scientific_name>Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)</scientific_name>
-                                            <common_name>Yeast</common_name>
-                                            <synonym>Eremothecium gossypii</synonym>
-                                          </taxonomy>
-                                        </clade>
-                                      </clade>
-                                    </clade>
-                                    <clade>
-                                      <name>Debaryomyces &amp; Candida</name>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">5475</id>
-                                          <scientific_name>Candida</scientific_name>
-                                          <synonym>Torulopsis</synonym>
-                                          <rank>genus</rank>
-                                        </taxonomy>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">237561</id>
-                                            <code>CANAL</code>
-                                            <scientific_name>Candida albicans (strain SC5314 / ATCC MYA-2876)</scientific_name>
-                                            <common_name>Yeast</common_name>
-                                            <rank>strain</rank>
-                                          </taxonomy>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">294747</id>
-                                            <code>CANTT</code>
-                                            <scientific_name>Candida tropicalis (strain ATCC MYA-3404 / T1)</scientific_name>
-                                            <common_name>Yeast</common_name>
-                                            <rank>strain</rank>
-                                          </taxonomy>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">284592</id>
-                                          <code>DEBHA</code>
-                                          <scientific_name>Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)</scientific_name>
-                                          <common_name>Yeast</common_name>
-                                          <synonym>Torulaspora hansenii</synonym>
-                                          <synonym>Debaryomyces hansenii CBS767</synonym>
-                                        </taxonomy>
-                                      </clade>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">284591</id>
-                                      <code>YARLI</code>
-                                      <scientific_name>Yarrowia lipolytica (strain CLIB 122 / E 150)</scientific_name>
-                                      <common_name>Yeast</common_name>
-                                      <synonym>Candida lipolytica</synonym>
-                                      <rank>strain</rank>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">451866</id>
-                                  <scientific_name>Taphrinomycotina</scientific_name>
-                                  <rank>subphylum</rank>
-                                </taxonomy>
-                                <clade>
-                                  <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">4895</id>
-                                      <scientific_name>Schizosaccharomyces</scientific_name>
-                                      <rank>genus</rank>
-                                    </taxonomy>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">402676</id>
-                                        <code>SCHJY</code>
-                                        <scientific_name>Schizosaccharomyces japonicus (strain yFS275 / FY16936)</scientific_name>
-                                        <common_name>Fission yeast</common_name>
-                                        <rank>strain</rank>
-                                      </taxonomy>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">4899</id>
-                                        <code>SCHOT</code>
-                                        <scientific_name>Schizosaccharomyces octosporus</scientific_name>
-                                        <common_name>Fission yeast</common_name>
-                                        <rank>species</rank>
-                                        <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>
-                                      </taxonomy>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">284812</id>
-                                        <code>SCHPO</code>
-                                        <scientific_name>Schizosaccharomyces pombe (strain 972 / ATCC 24843)</scientific_name>
-                                        <common_name>Fission yeast</common_name>
-                                        <rank>strain</rank>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">4754</id>
-                                      <code>PNECA</code>
-                                      <scientific_name>Pneumocystis carinii</scientific_name>
-                                      <rank>species</rank>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">5606</id>
-                                    <scientific_name>Saitoella complicata</scientific_name>
-                                    <rank>species</rank>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">5204</id>
-                                <scientific_name>Basidiomycota</scientific_name>
-                                <rank>phylum</rank>
-                              </taxonomy>
-                              <clade>
-                                <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>
-                                <clade>
-                                  <name>Agaricomycotina &amp; Ustilaginomycotina</name>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">5302</id>
-                                      <scientific_name>Agaricomycotina</scientific_name>
-                                    </taxonomy>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">155619</id>
-                                        <scientific_name>Homobasidiomycetes</scientific_name>
-                                        <rank>class</rank>
-                                      </taxonomy>
-                                      <reference doi="10.1098/rspb.2002.2123">
-                                        <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>
-                                      </reference>
-                                      <clade>
-                                        <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>
-                                        <clade>
-                                          <name>Agaricomycetidae &amp; Gloeophyllum</name>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">452333</id>
-                                              <scientific_name>Agaricomycetidae</scientific_name>
-                                              <rank>subclass</rank>
-                                            </taxonomy>
-                                            <clade>
-                                              <name>Agaricales &amp; Boletales</name>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">5338</id>
-                                                  <scientific_name>Agaricales</scientific_name>
-                                                  <rank>order</rank>
-                                                </taxonomy>
-                                                <clade>
-                                                  <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>
-                                                  <clade>
-                                                    <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>
-                                                    <clade>
-                                                      <name>Agaricus &amp; Coprinopsis</name>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">597362</id>
-                                                          <code>AGABU</code>
-                                                          <scientific_name>Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392)</scientific_name>
-                                                          <common_name>White button mushroom</common_name>
-                                                          <synonym>Agaricus bisporus var. burnettii JB137-S8</synonym>
-                                                          <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>
-                                                        </taxonomy>
-                                                      </clade>
-                                                      <clade>
-                                                        <taxonomy>
-                                                          <id provider="uniprot">5346</id>
-                                                          <code>COPC7</code>
-                                                          <scientific_name>Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)</scientific_name>
-                                                          <common_name>Inky cap fungus</common_name>
-                                                          <synonym>Hormographiella aspergillata</synonym>
-                                                          <rank>strain</rank>
-                                                          <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>
-                                                        </taxonomy>
-                                                      </clade>
-                                                    </clade>
-                                                    <clade>
-                                                      <taxonomy>
-                                                        <id provider="uniprot">486041</id>
-                                                        <code>LACBS</code>
-                                                        <scientific_name>Laccaria bicolor</scientific_name>
-                                                        <common_name>Bicoloured deceiver</common_name>
-                                                        <synonym>Laccaria laccata var. bicolor</synonym>
-                                                        <synonym>Laccaria bicolor S238N-H82</synonym>
-                                                        <rank>strain</rank>
-                                                        <uri>http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG</uri>
-                                                      </taxonomy>
-                                                    </clade>
-                                                  </clade>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">206324</id>
-                                                      <scientific_name>Gymnopus luxurians</scientific_name>
-                                                      <rank>species</rank>
-                                                      <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>
-                                                    </taxonomy>
-                                                  </clade>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">5322</id>
-                                                    <code>PLEOS</code>
-                                                    <scientific_name>Pleurotus ostreatus</scientific_name>
-                                                    <common_name>Oyster mushroom</common_name>
-                                                    <synonym>White-rot fungus</synonym>
-                                                    <rank>species</rank>
-                                                    <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                              </clade>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">68889</id>
-                                                  <scientific_name>Boletales</scientific_name>
-                                                  <synonym>Melanogastrales</synonym>
-                                                  <synonym>Sclerodermatales</synonym>
-                                                  <rank>order</rank>
-                                                </taxonomy>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">227334</id>
-                                                    <scientific_name>Coniophorineae</scientific_name>
-                                                    <rank>suborder</rank>
-                                                  </taxonomy>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">80637</id>
-                                                      <code>CPUXX</code>
-                                                      <scientific_name>Coniophora puteana</scientific_name>
-                                                      <authority>Schum. ex Fries</authority>
-                                                      <common_name>cellar fungus</common_name>
-                                                      <rank>species</rank>
-                                                      <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>
-                                                    </taxonomy>
-                                                  </clade>
-                                                  <clade>
-                                                    <taxonomy>
-                                                      <id provider="uniprot">578457</id>
-                                                      <code>SERL9</code>
-                                                      <scientific_name>Serpula lacrymans var. lacrymans (strain S7.9)</scientific_name>
-                                                      <common_name>Dry rot fungus</common_name>
-                                                      <uri>http://www.anbg.gov.au/fungi/images/0160.jpg</uri>
-                                                    </taxonomy>
-                                                  </clade>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">388859</id>
-                                                    <scientific_name>Hydnomerulius pinastri</scientific_name>
-                                                    <common_name>Spiny dry rot fungus</common_name>
-                                                    <rank>species</rank>
-                                                    <uri>http://genome.jgi.doe.gov/public/Hydpi1/Hydnomerulius_pinastri.jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                              </clade>
-                                            </clade>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">202697</id>
-                                                <code>JARXX</code>
-                                                <scientific_name>Jaapia argillacea</scientific_name>
-                                                <rank>species</rank>
-                                                <uri>http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg</uri>
-                                              </taxonomy>
-                                            </clade>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">104355</id>
-                                              <code>GLOTR</code>
-                                              <scientific_name>Gloeophyllum trabeum</scientific_name>
-                                              <common_name>Brown rot fungus</common_name>
-                                              <rank>species</rank>
-                                              <uri>http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">5303</id>
-                                            <scientific_name>Aphyllophorales</scientific_name>
-                                            <authority>Gäum. (1926)</authority>
-                                            <common_name>Shelf Fungi</common_name>
-                                            <synonym>Polyporales</synonym>
-                                            <rank>order</rank>
-                                          </taxonomy>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">83233</id>
-                                              <scientific_name>Coriolaceae</scientific_name>
-                                              <rank>family</rank>
-                                            </taxonomy>
-                                            <reference doi="10.1017/S1477200005001623">
-                                              <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>
-                                            </reference>
-                                            <reference>
-                                            </reference>
-                                            <reference>
-                                            </reference>
-                                            <clade>
-                                              <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>
-                                              <clade>
-                                                <name>Antrodia clade</name>
-                                                <taxonomy>
-                                                  <common_name>Antrodia clade</common_name>
-                                                </taxonomy>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">40483</id>
-                                                    <code>FPIXX</code>
-                                                    <scientific_name>Fomitopsis pinicola</scientific_name>
-                                                    <authority>(Swartz) P. Karsten</authority>
-                                                    <common_name>Red banded polypore</common_name>
-                                                    <synonym>Fomes pinicola</synonym>
-                                                    <synonym>Boletus pinicola</synonym>
-                                                    <rank>species</rank>
-                                                    <uri>http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">104341</id>
-                                                    <code>PPLXX</code>
-                                                    <scientific_name>Postia placenta</scientific_name>
-                                                    <synonym>Rhodonia placenta</synonym>
-                                                    <rank>species</rank>
-                                                    <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                              </clade>
-                                              <clade>
-                                                <name>core polyporoid clade</name>
-                                                <taxonomy>
-                                                  <common_name>core polyporoid clade</common_name>
-                                                </taxonomy>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">5325</id>
-                                                    <code>TRAVE</code>
-                                                    <scientific_name>Trametes versicolor</scientific_name>
-                                                    <authority>(L.) Lloyd 1921</authority>
-                                                    <common_name>White-rot fungus</common_name>
-                                                    <synonym>Coriolus versicolor</synonym>
-                                                    <synonym>Bjerkandera versicolor</synonym>
-                                                    <rank>species</rank>
-                                                    <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0304/0521.jpeg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">742152</id>
-                                                    <code>WOLCO</code>
-                                                    <scientific_name>Wolfiporia cocos (strain MD-104)</scientific_name>
-                                                    <common_name>Brown rot fungus</common_name>
-                                                    <synonym>Wolfiporia cocos MD-104 SS10</synonym>
-                                                    <uri>http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
-                                              </clade>
-                                            </clade>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">42742</id>
-                                                <code>CERSU</code>
-                                                <scientific_name>Ceriporiopsis subvermispora</scientific_name>
-                                                <rank>species</rank>
-                                              </taxonomy>
-                                            </clade>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">732165</id>
-                                              <code>DICSQ</code>
-                                              <scientific_name>Dichomitus squalens (strain LYAD-421)</scientific_name>
-                                              <common_name>Western red white-rot fungus</common_name>
-                                              <synonym>Dichomitus squalens LYAD-421 SS1</synonym>
-                                              <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">13563</id>
-                                          <code>HETAN</code>
-                                          <scientific_name>Heterobasidion annosum</scientific_name>
-                                          <common_name>Root rot fungus</common_name>
-                                          <rank>species</rank>
-                                        </taxonomy>
-                                      </clade>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">5215</id>
-                                        <scientific_name>Tremellaceae</scientific_name>
-                                        <rank>family</rank>
-                                      </taxonomy>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">5207</id>
-                                          <code>CRYNE</code>
-                                          <scientific_name>Cryptococcus neoformans</scientific_name>
-                                          <synonym>Filobasidiella neoformans</synonym>
-                                          <rank>species</rank>
-                                        </taxonomy>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="eol">1029985</id>
-                                          <code>TREME</code>
-                                          <scientific_name>Tremella mesenterica</scientific_name>
-                                          <authority>Pers. 1800</authority>
-                                          <common_name>Jelly fungus</common_name>
-                                          <synonym>Yellow Brain</synonym>
-                                          <synonym>Tremella lutescens</synonym>
-                                          <rank>species</rank>
-                                        </taxonomy>
-                                      </clade>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">452284</id>
-                                      <scientific_name>Ustilaginomycotina</scientific_name>
-                                      <rank>subphylum</rank>
-                                    </taxonomy>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">425265</id>
-                                        <code>MALGO</code>
-                                        <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>
-                                        <common_name>Dandruff-associated fungus</common_name>
-                                      </taxonomy>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">237631</id>
-                                        <code>USTMA</code>
-                                        <scientific_name>Ustilago maydis (strain 521 / FGSC 9021)</scientific_name>
-                                        <common_name>Corn smut fungus</common_name>
-                                        <rank>species</rank>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">29000</id>
-                                    <scientific_name>Pucciniomycotina</scientific_name>
-                                    <rank>subphylum</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">5258</id>
-                                      <scientific_name>Pucciniales</scientific_name>
-                                      <common_name>rusts</common_name>
-                                      <rank>order</rank>
-                                    </taxonomy>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">747676</id>
-                                        <code>MELLP</code>
-                                        <scientific_name>Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7)</scientific_name>
-                                        <authority>Kleb. 1902</authority>
-                                        <common_name>Poplar leaf rust fungus</common_name>
-                                        <synonym>Melampsora larici-populina 98AG31</synonym>
-                                        <synonym>Melampsora laricis-populina 98AG31</synonym>
-                                        <rank>strain</rank>
-                                      </taxonomy>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">5297</id>
-                                        <code>PUCGR</code>
-                                        <scientific_name>Puccinia graminis</scientific_name>
-                                        <authority>Pers. 1794</authority>
-                                        <common_name>Black stem rust fungus</common_name>
-                                        <rank>species</rank>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">89013</id>
-                                      <scientific_name>mitosporic Sporidiobolales</scientific_name>
-                                    </taxonomy>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">29898</id>
-                                        <code>RHOGR</code>
-                                        <scientific_name>Rhodotorula graminis</scientific_name>
-                                        <common_name>Yeast</common_name>
-                                        <rank>species</rank>
-                                      </taxonomy>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">40563</id>
-                                        <code>SPORO</code>
-                                        <scientific_name>Sporobolomyces roseus</scientific_name>
-                                        <authority>Kluyver &amp; C. B. Niel 1924</authority>
-                                        <rank>species</rank>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">671144</id>
-                                  <code>WALSC</code>
-                                  <scientific_name>Wallemia sebi (strain ATCC MYA-4683 / CBS 633.66)</scientific_name>
-                                  <rank>strain</rank>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">451507</id>
-                              <scientific_name>Mucoromycotina</scientific_name>
-                              <rank>subphylum</rank>
-                            </taxonomy>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">34489</id>
-                                <scientific_name>Mucoraceae</scientific_name>
-                                <rank>family</rank>
-                              </taxonomy>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">36080</id>
-                                  <code>MUCCI</code>
-                                  <scientific_name>Mucor circinelloides</scientific_name>
-                                  <synonym>Mucor griseo-roseus</synonym>
-                                  <rank>species</rank>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">4837</id>
-                                  <code>PHYBL</code>
-                                  <scientific_name>Phycomyces blakesleeanus</scientific_name>
-                                  <rank>species</rank>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">64495</id>
-                                  <code>RHIOR</code>
-                                  <scientific_name>Rhizopus oryzae</scientific_name>
-                                  <common_name>Mucormycosis agent</common_name>
-                                  <synonym>Rhizopus delemar</synonym>
-                                  <synonym>Rhizopus arrhizus var. delemar</synonym>
-                                  <rank>species</rank>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">1069443</id>
-                                <code>MVNXX</code>
-                                <scientific_name>Mortierella verticillata NRRL 6337</scientific_name>
-                                <rank>species</rank>
-                                <uri>http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg</uri>
-                                <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">61392</id>
-                            <code>CREXX</code>
-                            <scientific_name>Coemansia reversa</scientific_name>
-                            <rank>species</rank>
-                            <uri>http://genome.jgi.doe.gov/public/Coere1/Coemansia.jpg</uri>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">28583</id>
-                          <code>ALLMA</code>
-                          <scientific_name>Allomyces macrogynus</scientific_name>
-                          <rank>species</rank>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">4761</id>
-                        <scientific_name>Chytridiomycota</scientific_name>
-                        <common_name>chytrids</common_name>
-                        <synonym>Mastigomycotina</synonym>
-                        <rank>phylum</rank>
-                      </taxonomy>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">451435</id>
-                          <scientific_name>Chytridiomycetes</scientific_name>
-                          <rank>class</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">684364</id>
-                            <code>BATDJ</code>
-                            <scientific_name>Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211)</scientific_name>
-                            <common_name>Frog chytrid fungus</common_name>
-                            <rank>strain</rank>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">109760</id>
-                            <code>SPIPN</code>
-                            <scientific_name>Spizellomyces punctatus</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">1123529</id>
-                          <code>GONPR</code>
-                          <scientific_name>Gonapodya prolifera</scientific_name>
-                          <authority>A. Fisch. 1892</authority>
-                          <common_name>Aquatic fungus</common_name>
-                          <rank>species</rank>
-                          <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">73868</id>
-                      <code>PIRSE</code>
-                      <scientific_name>Piromyces sp. (strain E2)</scientific_name>
-                      <rank>species</rank>
-                      <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>
-                    </taxonomy>
-                  </clade>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">6029</id>
-                    <scientific_name>Microsporidia</scientific_name>
-                    <rank>phylum</rank>
-                  </taxonomy>
-                  <reference>
-                    <desc>Disseminated Infection Caused by Novel Species of Microsporidium, Thailand</desc>
-                  </reference>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">6032</id>
-                      <scientific_name>Apansporoblastina</scientific_name>
-                      <rank>suborder</rank>
-                    </taxonomy>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">6033</id>
-                        <scientific_name>Encephalitozoon</scientific_name>
-                        <rank>genus</rank>
-                      </taxonomy>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">284813</id>
-                          <code>ENCCU</code>
-                          <scientific_name>Encephalitozoon cuniculi (strain GB-M1)</scientific_name>
-                          <common_name>Microsporidian parasite</common_name>
-                          <rank>strain</rank>
-                          <uri>http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg</uri>
-                        </taxonomy>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">907965</id>
-                          <code>ENCHA</code>
-                          <scientific_name>Encephalitozoon hellem (strain ATCC 50504)</scientific_name>
-                          <common_name>Microsporidian parasite</common_name>
-                          <rank>strain</rank>
-                          <uri>http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg</uri>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <name>Nosematidae &amp; Enterocytozoonidae</name>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">993615</id>
-                          <code>VITCO</code>
-                          <scientific_name>Vittaforma corneae (strain ATCC 50505)</scientific_name>
-                          <common_name>Microsporidian parasite</common_name>
-                          <synonym>Nosema corneum</synonym>
-                        </taxonomy>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">481877</id>
-                          <code>ENTBH</code>
-                          <scientific_name>Enterocytozoon bieneusi (strain H348)</scientific_name>
-                          <common_name>Microsporidian parasite</common_name>
-                          <uri>http://www.biolib.cz/IMG/GAL/17310.jpg</uri>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">35232</id>
-                      <scientific_name>Pleistophoridae</scientific_name>
-                      <rank>family</rank>
-                    </taxonomy>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">72359</id>
-                        <code>TRAHO</code>
-                        <scientific_name>Trachipleistophora hominis</scientific_name>
-                        <common_name>Microsporidian parasite</common_name>
-                        <rank>species</rank>
-                      </taxonomy>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">948595</id>
-                        <code>VAVCU</code>
-                        <scientific_name>Vavraia culicis (isolate floridensis)</scientific_name>
-                        <common_name>Microsporidian parasite</common_name>
-                      </taxonomy>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">1003232</id>
-                      <code>EDHAE</code>
-                      <scientific_name>Edhazardia aedis (strain USNM 41457)</scientific_name>
-                      <common_name>Microsporidian parasite</common_name>
-                      <uri>http://wwx.inhs.illinois.edu/files/6813/4021/9153/4Edhazardia_aedis.jpg</uri>
-                    </taxonomy>
-                  </clade>
-                </clade>
-              </clade>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">1001604</id>
-                  <scientific_name>Nucleariidae and Fonticula group</scientific_name>
-                </taxonomy>
-                <reference doi="10.1093/molbev/msp185">
-                  <desc>Phylogeny of the �Forgotten� Cellular Slime Mold, Fonticula alba, Reveals a Key Evolutionary Branch within Opisthokonta</desc>
-                </reference>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">691883</id>
-                    <code>FALXX</code>
-                    <scientific_name>Fonticula alba</scientific_name>
-                    <authority>Worley, Raper &amp; Hohl. 1979</authority>
-                    <rank>species</rank>
-                    <uri>http://mbe.oxfordjournals.org/content/26/12/2699/F2.medium.gif</uri>
-                  </taxonomy>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">154970</id>
-                    <scientific_name>Nuclearia simplex</scientific_name>
-                    <rank>species</rank>
-                  </taxonomy>
-                </clade>
-              </clade>
-            </clade>
-          </clade>
-          <clade>
-            <taxonomy>
-              <id provider="uniprot">554915</id>
-              <scientific_name>Amoebozoa</scientific_name>
-            </taxonomy>
-            <clade>
-              <taxonomy>
-                <id provider="uniprot">33083</id>
-                <scientific_name>Dictyosteliida</scientific_name>
-                <common_name>dictyostelid cellular slime molds</common_name>
-                <rank>order</rank>
-              </taxonomy>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">5782</id>
-                  <scientific_name>Dictyostelium</scientific_name>
-                  <rank>genus</rank>
-                </taxonomy>
-                <reference doi="10.1186/1471-2148-11-84">
-                  <desc>An expanded phylogeny of social amoebas (Dictyostelia) shows increasing diversity and new morphological patterns</desc>
-                </reference>
-                <reference>
-                </reference>
-                <reference>
-                </reference>
-                <clade>
-                  <name>group 4</name>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">44689</id>
-                      <code>DICDI</code>
-                      <scientific_name>Dictyostelium discoideum</scientific_name>
-                      <common_name>Slime mold</common_name>
-                      <rank>species</rank>
-                      <uri>http://www.tins.ne.jp/~tsukubagec/csm.GIF</uri>
-                    </taxonomy>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">5786</id>
-                      <code>DICPU</code>
-                      <scientific_name>Dictyostelium purpureum</scientific_name>
-                      <common_name>Slime mold</common_name>
-                      <rank>species</rank>
-                    </taxonomy>
-                  </clade>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">1054147</id>
-                    <code>DICFS</code>
-                    <scientific_name>Dictyostelium fasciculatum (strain SH3)</scientific_name>
-                    <common_name>Slime mold</common_name>
-                    <rank>strain</rank>
-                  </taxonomy>
-                </clade>
-              </clade>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">13642</id>
-                  <code>POLPA</code>
-                  <scientific_name>Polysphondylium pallidum</scientific_name>
-                  <common_name>Cellular slime mold</common_name>
-                  <rank>species</rank>
-                  <uri>http://cosmos.bot.kyoto-u.ac.jp/csm/photos2/Pp8s.jpeg</uri>
-                </taxonomy>
-              </clade>
-            </clade>
-            <clade>
-              <taxonomy>
-                <id provider="uniprot">5758</id>
-                <scientific_name>Entamoeba</scientific_name>
-                <rank>genus</rank>
-              </taxonomy>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">5759</id>
-                  <code>ENTHI</code>
-                  <scientific_name>Entamoeba histolytica</scientific_name>
-                  <rank>species</rank>
-                  <uri>http://www.dpd.cdc.gov/dpdx/images/ParasiteImages/A-F/Amebiasis/E_histo/Ehistdisp_troph_wtmt2.jpg</uri>
-                </taxonomy>
-              </clade>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">370354</id>
-                  <code>ENTDS</code>
-                  <scientific_name>Entamoeba dispar (strain ATCC PRA-260 / SAW760)</scientific_name>
-                </taxonomy>
-              </clade>
-            </clade>
-          </clade>
-        </clade>
-        <clade>
-          <name>Bikonta</name>
-          <reference doi="10.1099/ijs.0.63216-0">
-          </reference>
-          <clade>
-            <name>Plants+HC+SAR megagroup</name>
-            <clade>
-              <name>Plants+HC</name>
-              <clade>
-                <name>Archaeplastida</name>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">33090</id>
-                    <scientific_name>Viridiplantae</scientific_name>
-                    <common_name>green plants</common_name>
-                    <rank>kingdom</rank>
-                  </taxonomy>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">3193</id>
-                      <scientific_name>Embryophyta</scientific_name>
-                    </taxonomy>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">58023</id>
-                        <scientific_name>Tracheophyta</scientific_name>
-                      </taxonomy>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">58024</id>
-                          <scientific_name>Spermatophyta</scientific_name>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">3398</id>
-                            <scientific_name>Magnoliophyta</scientific_name>
-                          </taxonomy>
-                          <clade>
-                            <name>eudicotyledons &amp; Liliopsida</name>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">71240</id>
-                                <scientific_name>eudicotyledons</scientific_name>
-                              </taxonomy>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">91827</id>
-                                  <scientific_name>core eudicotyledons</scientific_name>
-                                </taxonomy>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">71275</id>
-                                    <scientific_name>rosids</scientific_name>
-                                    <rank>subclass</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <name>fabids &amp; malvids</name>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">91835</id>
-                                        <scientific_name>fabids</scientific_name>
-                                      </taxonomy>
-                                      <clade>
-                                        <name>Rosales &amp; Cucurbitales &amp; Fabales</name>
-                                        <clade>
-                                          <name>Rosales &amp; Cucurbitales</name>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">3745</id>
-                                              <scientific_name>Rosaceae</scientific_name>
-                                              <rank>family</rank>
-                                            </taxonomy>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">57918</id>
-                                                <code>FRAVE</code>
-                                                <scientific_name>Fragaria vesca</scientific_name>
-                                                <common_name>Woodland strawberry</common_name>
-                                                <synonym>Fragaria vesca L.</synonym>
-                                                <synonym>European strawberry</synonym>
-                                                <synonym>alpine strawberry</synonym>
-                                                <rank>species</rank>
-                                                <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>
-                                                <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>
-                                              </taxonomy>
-                                            </clade>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">3760</id>
-                                                <code>PRUPE</code>
-                                                <scientific_name>Prunus persica</scientific_name>
-                                                <common_name>Peach</common_name>
-                                                <synonym>Persica vulgaris</synonym>
-                                                <synonym>Amygdalus persica</synonym>
-                                                <rank>species</rank>
-                                                <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>
-                                              </taxonomy>
-                                            </clade>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">3659</id>
-                                              <code>CUCSA</code>
-                                              <scientific_name>Cucumis sativus</scientific_name>
-                                              <common_name>Cucumber</common_name>
-                                              <rank>species</rank>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">3814</id>
-                                            <scientific_name>Papilionoideae</scientific_name>
-                                            <rank>subfamily</rank>
-                                          </taxonomy>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">3847</id>
-                                              <code>SOYBN</code>
-                                              <scientific_name>Glycine max</scientific_name>
-                                              <authority>cv. Wye</authority>
-                                              <common_name>Soybean</common_name>
-                                              <synonym>Glycine hispida</synonym>
-                                              <rank>species</rank>
-                                            </taxonomy>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">3880</id>
-                                              <code>MEDTR</code>
-                                              <scientific_name>Medicago truncatula</scientific_name>
-                                              <common_name>Barrel medic</common_name>
-                                              <synonym>Medicago tribuloides</synonym>
-                                              <rank>species</rank>
-                                              <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">3646</id>
-                                          <scientific_name>Malpighiales</scientific_name>
-                                          <rank>order</rank>
-                                        </taxonomy>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">3977</id>
-                                            <scientific_name>Euphorbiaceae</scientific_name>
-                                            <rank>family</rank>
-                                          </taxonomy>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">3983</id>
-                                              <code>MANES</code>
-                                              <scientific_name>Manihot esculenta</scientific_name>
-                                              <common_name>Tapioca</common_name>
-                                              <synonym>Jatropha manihot</synonym>
-                                              <rank>species</rank>
-                                              <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">3988</id>
-                                              <code>RICCO</code>
-                                              <scientific_name>Ricinus communis</scientific_name>
-                                              <common_name>Castor bean</common_name>
-                                              <synonym>Ricinus sanguineus</synonym>
-                                              <rank>species</rank>
-                                              <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">3694</id>
-                                            <code>POPTR</code>
-                                            <scientific_name>Populus trichocarpa</scientific_name>
-                                            <common_name>Western balsam poplar</common_name>
-                                            <synonym>Populus balsamifera subsp. trichocarpa</synonym>
-                                            <rank>species</rank>
-                                          </taxonomy>
-                                        </clade>
-                                      </clade>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">91836</id>
-                                        <scientific_name>malvids</scientific_name>
-                                      </taxonomy>
-                                      <clade>
-                                        <name>Brassicales &amp; Sapindales</name>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">3699</id>
-                                            <scientific_name>Brassicales</scientific_name>
-                                            <rank>order</rank>
-                                          </taxonomy>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">3700</id>
-                                              <scientific_name>Brassicaceae</scientific_name>
-                                              <rank>family</rank>
-                                            </taxonomy>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">3701</id>
-                                                <scientific_name>Arabidopsis</scientific_name>
-                                                <rank>genus</rank>
-                                              </taxonomy>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">59689</id>
-                                                  <code>ARALY</code>
-                                                  <scientific_name>Arabidopsis lyrata</scientific_name>
-                                                  <common_name>Lyre-leaved rock-cress</common_name>
-                                                  <synonym>Arabis lyrata</synonym>
-                                                  <rank>species</rank>
-                                                </taxonomy>
-                                              </clade>
-                                              <clade>
-                                                <taxonomy>
-                                                  <id provider="uniprot">3702</id>
-                                                  <code>ARATH</code>
-                                                  <scientific_name>Arabidopsis thaliana</scientific_name>
-                                                  <common_name>Mouse-ear cress</common_name>
-                                                  <rank>species</rank>
-                                                </taxonomy>
-                                              </clade>
-                                            </clade>
-                                            <clade>
-                                              <taxonomy>
-                                                <id provider="uniprot">98038</id>
-                                                <code>THEHA</code>
-                                                <scientific_name>Thellungiella halophila</scientific_name>
-                                                <common_name>Salt cress</common_name>
-                                                <rank>species</rank>
-                                                <uri>http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg</uri>
-                                              </taxonomy>
-                                            </clade>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">3649</id>
-                                              <code>CARPA</code>
-                                              <scientific_name>Carica papaya</scientific_name>
-                                              <common_name>Papaya</common_name>
-                                              <rank>species</rank>
-                                              <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>
-                                              <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">2706</id>
-                                            <scientific_name>Citrus</scientific_name>
-                                            <rank>genus</rank>
-                                          </taxonomy>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">85681</id>
-                                              <code>CCLXX</code>
-                                              <scientific_name>Citrus clementina</scientific_name>
-                                              <synonym>Citrus clementina hort. ex Tanaka</synonym>
-                                              <rank>species</rank>
-                                              <uri>http://www.citrusgenomedb.org/sites/default/files/tripal/tripal_organism/images/Citrus_clementina.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">2711</id>
-                                              <code>CITSI</code>
-                                              <scientific_name>Citrus sinensis</scientific_name>
-                                              <common_name>Sweet orange</common_name>
-                                              <synonym>Citrus x sinensis</synonym>
-                                              <synonym>Citrus aurantium var. sinensis</synonym>
-                                              <rank>species</rank>
-                                              <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">71139</id>
-                                          <code>EUCGR</code>
-                                          <scientific_name>Eucalyptus grandis</scientific_name>
-                                          <common_name>Flooded gum</common_name>
-                                          <rank>species</rank>
-                                          <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>
-                                        </taxonomy>
-                                      </clade>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="eol">582304</id>
-                                      <code>VITVI</code>
-                                      <scientific_name>Vitis vinifera</scientific_name>
-                                      <common_name>Grape</common_name>
-                                      <rank>species</rank>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">91888</id>
-                                    <scientific_name>lamiids</scientific_name>
-                                  </taxonomy>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">4070</id>
-                                      <scientific_name>Solanaceae</scientific_name>
-                                      <rank>family</rank>
-                                    </taxonomy>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">4107</id>
-                                        <scientific_name>Solanum</scientific_name>
-                                        <rank>genus</rank>
-                                      </taxonomy>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">49274</id>
-                                          <scientific_name>Lycopersicon</scientific_name>
-                                          <rank>subgenus</rank>
-                                        </taxonomy>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">4081</id>
-                                            <code>SOLLC</code>
-                                            <scientific_name>Solanum lycopersicum</scientific_name>
-                                            <common_name>Tomato</common_name>
-                                            <synonym>Lycopersicon esculentum</synonym>
-                                            <rank>species</rank>
-                                            <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>
-                                          </taxonomy>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">4084</id>
-                                            <code>SOLPI</code>
-                                            <scientific_name>Solanum pimpinellifolium</scientific_name>
-                                            <common_name>Currant tomato</common_name>
-                                            <synonym>Lycopersicon pimpinellifolium</synonym>
-                                            <rank>species</rank>
-                                            <uri>http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg</uri>
-                                          </taxonomy>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">4113</id>
-                                          <code>SOLTU</code>
-                                          <scientific_name>Solanum tuberosum</scientific_name>
-                                          <common_name>Potato</common_name>
-                                          <rank>species</rank>
-                                          <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg</uri>
-                                        </taxonomy>
-                                      </clade>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">4097</id>
-                                        <code>TOBAC</code>
-                                        <scientific_name>Nicotiana tabacum</scientific_name>
-                                        <common_name>Common tobacco</common_name>
-                                        <rank>species</rank>
-                                        <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">4155</id>
-                                      <code>MIMGU</code>
-                                      <scientific_name>Mimulus guttatus</scientific_name>
-                                      <common_name>Yellow monkey flower</common_name>
-                                      <synonym>Yellow monkey flower</synonym>
-                                      <rank>species</rank>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">218851</id>
-                                  <code>AQUCA</code>
-                                  <scientific_name>Aquilegia caerulea</scientific_name>
-                                  <authority>E.James</authority>
-                                  <common_name>Rocky mountain columbine</common_name>
-                                  <synonym>Aquilegia coerulea</synonym>
-                                  <rank>species</rank>
-                                  <uri>http://www.wildflower.org/image_archive/320x240/PCD3618/PCD3618_IMG0033.JPG</uri>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">4447</id>
-                                <scientific_name>Liliopsida</scientific_name>
-                                <rank>class</rank>
-                              </taxonomy>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">4479</id>
-                                  <scientific_name>Poaceae</scientific_name>
-                                  <rank>family</rank>
-                                </taxonomy>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">147369</id>
-                                    <scientific_name>Panicoideae</scientific_name>
-                                    <rank>subfamily</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">147429</id>
-                                      <scientific_name>Andropogoneae</scientific_name>
-                                      <rank>tribe</rank>
-                                    </taxonomy>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">4558</id>
-                                        <code>SORBI</code>
-                                        <scientific_name>Sorghum bicolor</scientific_name>
-                                        <common_name>Sorghum</common_name>
-                                        <synonym>Sorghum vulgare</synonym>
-                                        <rank>species</rank>
-                                      </taxonomy>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">4577</id>
-                                        <code>MAIZE</code>
-                                        <scientific_name>Zea mays</scientific_name>
-                                        <common_name>Maize</common_name>
-                                        <rank>species</rank>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">147428</id>
-                                      <scientific_name>Paniceae</scientific_name>
-                                      <rank>tribe</rank>
-                                    </taxonomy>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">38727</id>
-                                        <code>PANVG</code>
-                                        <scientific_name>Panicum virgatum</scientific_name>
-                                        <common_name>switchgrass</common_name>
-                                        <rank>species</rank>
-                                        <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>
-                                      </taxonomy>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">4555</id>
-                                        <code>SETIT</code>
-                                        <scientific_name>Setaria italica</scientific_name>
-                                        <common_name>Foxtail millet</common_name>
-                                        <synonym>Panicum italicum</synonym>
-                                        <rank>species</rank>
-                                        <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">359160</id>
-                                    <scientific_name>BEP clade</scientific_name>
-                                  </taxonomy>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">4527</id>
-                                      <scientific_name>Oryza</scientific_name>
-                                      <rank>genus</rank>
-                                    </taxonomy>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">4530</id>
-                                        <code>ORYSA</code>
-                                        <scientific_name>Oryza sativa</scientific_name>
-                                        <common_name>Rice</common_name>
-                                        <rank>species</rank>
-                                      </taxonomy>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">39947</id>
-                                        <code>ORYSJ</code>
-                                        <scientific_name>Oryza sativa subsp. japonica</scientific_name>
-                                        <common_name>Rice</common_name>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">147368</id>
-                                      <scientific_name>Pooideae</scientific_name>
-                                      <rank>subfamily</rank>
-                                    </taxonomy>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">15368</id>
-                                        <code>BRADI</code>
-                                        <scientific_name>Brachypodium distachyon</scientific_name>
-                                        <common_name>Purple false brome</common_name>
-                                        <synonym>Trachynia distachya</synonym>
-                                        <rank>species</rank>
-                                        <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg</uri>
-                                      </taxonomy>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">112509</id>
-                                        <code>HORVD</code>
-                                        <scientific_name>Hordeum vulgare var. distichum</scientific_name>
-                                        <common_name>Two-rowed barley</common_name>
-                                        <rank>subspecies</rank>
-                                        <uri>http://www.missouriplants.com/Grasses/Hordeum_vulgare_plant.jpg</uri>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">214687</id>
-                                  <code>MUSAM</code>
-                                  <scientific_name>Musa acuminata subsp. malaccensis</scientific_name>
-                                  <authority>(Ridl.) N.W.Simmonds</authority>
-                                  <common_name>Wild banana</common_name>
-                                  <synonym>Musa malaccensis</synonym>
-                                  <rank>subspecies</rank>
-                                  <uri>http://farm5.staticflickr.com/4009/4572831376_07ca3089d1_z.jpg</uri>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">13333</id>
-                              <code>AMBTC</code>
-                              <scientific_name>Amborella trichopoda</scientific_name>
-                              <rank>species</rank>
-                              <uri>http://www.sciencemag.org/content/342/6165/1456/F1.medium.gif</uri>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">3329</id>
-                            <code>PICAB</code>
-                            <scientific_name>Picea abies</scientific_name>
-                            <authority>H.Karst</authority>
-                            <common_name>Norway spruce</common_name>
-                            <synonym>Picea excelsa</synonym>
-                            <rank>species</rank>
-                            <uri>http://pharm1.pharmazie.uni-greifswald.de/allgemei/serturn/arzpfl-b/picea_a.jpg</uri>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">88036</id>
-                          <code>SELML</code>
-                          <scientific_name>Selaginella moellendorffii</scientific_name>
-                          <authority>Hieron</authority>
-                          <common_name>Spikemoss</common_name>
-                          <rank>species</rank>
-                          <uri>http://www.plantsystematics.org/users/robbin/5_22_06/upload121/Selag_moellendorffii3.JPG</uri>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">145481</id>
-                        <code>PHYPA</code>
-                        <scientific_name>Physcomitrella patens subsp. patens</scientific_name>
-                        <common_name>Moss</common_name>
-                        <rank>subspecies</rank>
-                        <uri>http://www.aua.gr/plantdevelopment/Photos2/01%20Physcomitrella%20patens.jpg</uri>
-                      </taxonomy>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">3041</id>
-                      <scientific_name>Chlorophyta</scientific_name>
-                      <rank>phylum</rank>
-                    </taxonomy>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">13792</id>
-                        <scientific_name>Mamiellales</scientific_name>
-                        <rank>order</rank>
-                      </taxonomy>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">70447</id>
-                          <scientific_name>Ostreococcus</scientific_name>
-                          <rank>genus</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">436017</id>
-                            <code>OSTLU</code>
-                            <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">385169</id>
-                            <code>ORCXX</code>
-                            <scientific_name>Ostreococcus sp. RCC809</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">70448</id>
-                            <code>OSTTA</code>
-                            <scientific_name>Ostreococcus tauri</scientific_name>
-                            <rank>species</rank>
-                            <uri>http://genome.jgi-psf.org/Ost9901_3/Ostta.jpg</uri>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">38832</id>
-                          <scientific_name>Micromonas</scientific_name>
-                          <rank>genus</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">564608</id>
-                            <code>MICPC</code>
-                            <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>
-                            <common_name>Picoplanktonic green alga</common_name>
-                            <uri>http://www.mansfield.ohio-state.edu/~sabedon/microfla.jpg</uri>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">296587</id>
-                            <code>MICSR</code>
-                            <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>
-                            <common_name>Picoplanktonic green alga</common_name>
-                            <synonym>Micromonas sp. RCC299</synonym>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <name>Trebouxiophyceae &amp; Chlorophyceae</name>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">75966</id>
-                          <scientific_name>Trebouxiophyceae</scientific_name>
-                          <rank>class</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">763042</id>
-                            <code>ASCXX</code>
-                            <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>
-                            <rank>species</rank>
-                            <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">554065</id>
-                            <code>CHLVA</code>
-                            <scientific_name>Chlorella variabilis</scientific_name>
-                            <authority>Shihira &amp; Krauss 1965</authority>
-                            <common_name>Green alga</common_name>
-                            <synonym>Chlorella sp. NC64A</synonym>
-                            <synonym>Chlorella sp. Bnd1-ZK</synonym>
-                            <rank>species</rank>
-                            <uri>http://www.sinice.cz/res/image/collection/Chlorella.jpg</uri>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">574566</id>
-                            <code>CSUXX</code>
-                            <scientific_name>Coccomyxa subellipsoidea C-169</scientific_name>
-                            <synonym>Chlorella vulgaris C-169</synonym>
-                            <synonym>Coccomyxa sp. C-169</synonym>
-                            <rank>species</rank>
-                            <uri>http://genome.jgi.doe.gov/Coc_C169_1/Chlvu.jpg</uri>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">3042</id>
-                          <scientific_name>Chlamydomonadales</scientific_name>
-                          <rank>order</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">3055</id>
-                            <code>CHLRE</code>
-                            <scientific_name>Chlamydomonas reinhardtii</scientific_name>
-                            <synonym>Chlamydomonas smithii</synonym>
-                            <rank>species</rank>
-                            <uri>http://genome.jgi-psf.org/Chlre3/chlamy_BG.gif</uri>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">3067</id>
-                            <code>VOLCA</code>
-                            <scientific_name>Volvox carteri</scientific_name>
-                            <common_name>Green alga</common_name>
-                            <rank>species</rank>
-                            <uri>http://genome.jgi-psf.org/Volca1/Volvox.jpg</uri>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                    </clade>
-                  </clade>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">2763</id>
-                    <scientific_name>Rhodophyta</scientific_name>
-                    <common_name>red algae</common_name>
-                  </taxonomy>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">265316</id>
-                      <scientific_name>Cyanidiaceae</scientific_name>
-                      <rank>family</rank>
-                    </taxonomy>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">45157</id>
-                        <code>CYAME</code>
-                        <scientific_name>Cyanidioschyzon merolae</scientific_name>
-                        <common_name>Red alga</common_name>
-                        <rank>species</rank>
-                        <uri>http://www.shigen.nig.ac.jp/algae_tree/CyanidiophyceaeIMG.jpg</uri>
-                      </taxonomy>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">130081</id>
-                        <code>GALSU</code>
-                        <scientific_name>Galdieria sulphuraria</scientific_name>
-                        <common_name>Red alga</common_name>
-                        <rank>species</rank>
-                        <uri>http://phenomena.nationalgeographic.com/files/2013/03/Alga.jpg</uri>
-                      </taxonomy>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">2769</id>
-                      <code>CHOCR</code>
-                      <scientific_name>Chondrus crispus</scientific_name>
-                      <common_name>Carragheen moss</common_name>
-                      <synonym>Irish moss</synonym>
-                      <rank>species</rank>
-                      <uri>http://www.seaweed.ie/_images/MG3_0485.png</uri>
-                    </taxonomy>
-                  </clade>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">38254</id>
-                    <scientific_name>Glaucocystophyceae</scientific_name>
-                    <synonym>Glaucophyta</synonym>
-                    <rank>class</rank>
-                  </taxonomy>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">2762</id>
-                      <code>CYAPA</code>
-                      <scientific_name>Cyanophora paradoxa</scientific_name>
-                      <rank>species</rank>
-                      <uri>http://www.people.vcu.edu/~rfisher/paradoxa.jpg</uri>
-                    </taxonomy>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">38271</id>
-                      <scientific_name>Glaucocystis nostochinearum</scientific_name>
-                      <rank>species</rank>
-                      <uri>http://protist.i.hosei.ac.jp/pdb/images/Others/Glaucocystis/sp_02.jpg</uri>
-                    </taxonomy>
-                  </clade>
-                </clade>
-              </clade>
-              <clade>
-                <name>Hacrobia (Cryptophyta &amp; Haptophyceae &amp; Centroheliozoa)</name>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">2903</id>
-                    <code>EMIHU</code>
-                    <scientific_name>Emiliania huxleyi</scientific_name>
-                    <synonym>Pontosphaera huxleyi</synonym>
-                    <rank>species</rank>
-                    <uri>http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg</uri>
-                  </taxonomy>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">55529</id>
-                    <code>GUITH</code>
-                    <scientific_name>Guillardia theta</scientific_name>
-                    <synonym>Cryptomonas phi</synonym>
-                    <rank>species</rank>
-                    <uri>http://genome.jgi.doe.gov/public/Guith1/Gtheta_SEM.jpg</uri>
-                  </taxonomy>
-                  <reference doi="10.1016/j.cub.2007.03.069">
-                    <desc>Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages</desc>
-                  </reference>
-                  <reference>
-                  </reference>
-                </clade>
-              </clade>
-            </clade>
-            <clade>
-              <name>Stramenopiles &amp; Alveolata &amp; Rhizaria</name>
-              <reference doi="10.1186/1471-2148-10-377">
-                <desc>Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists</desc>
-              </reference>
-              <reference>
-              </reference>
-              <clade>
-                <name>Stramenopiles &amp; Alveolata</name>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">33630</id>
-                    <scientific_name>Alveolata</scientific_name>
-                  </taxonomy>
-                  <reference doi="10.1371/journal.pone.0019933">
-                    <desc>Spliced Leader RNAs, Mitochondrial Gene Frameshifts and Multi-Protein Phylogeny Expand Support for the Genus Perkinsus as a Unique Group of Alveolates</desc>
-                  </reference>
-                  <clade>
-                    <name>Myzozoa</name>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">5794</id>
-                        <scientific_name>Apicomplexa</scientific_name>
-                        <rank>phylum</rank>
-                      </taxonomy>
-                      <reference doi="10.1101/gr.083386.108">
-                        <desc>The origins of apicomplexan sequence innovation (2009)</desc>
-                      </reference>
-                      <reference>
-                      </reference>
-                      <clade>
-                        <name>Aconoidasida &amp; Coccidia</name>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">422676</id>
-                            <scientific_name>Aconoidasida</scientific_name>
-                            <rank>class</rank>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">5820</id>
-                              <scientific_name>Plasmodium</scientific_name>
-                              <rank>genus</rank>
-                            </taxonomy>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">5825</id>
-                                <code>PLACH</code>
-                                <scientific_name>Plasmodium chabaudi</scientific_name>
-                                <rank>species</rank>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">36329</id>
-                                <code>PLAF7</code>
-                                <scientific_name>Plasmodium falciparum (isolate 3D7)</scientific_name>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">73239</id>
-                                <code>PLAYO</code>
-                                <scientific_name>Plasmodium yoelii yoelii</scientific_name>
-                                <rank>subspecies</rank>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">126793</id>
-                                <code>PLAVS</code>
-                                <scientific_name>Plasmodium vivax (strain Salvador I)</scientific_name>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">5863</id>
-                              <scientific_name>Piroplasmida</scientific_name>
-                              <common_name>Piroplasmids</common_name>
-                            </taxonomy>
-                            <clade>
-                              <name>Theileria</name>
-                              <taxonomy>
-                                <id provider="uniprot">5873</id>
-                                <scientific_name>Theileria</scientific_name>
-                                <rank>genus</rank>
-                              </taxonomy>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">5874</id>
-                                  <code>THEAN</code>
-                                  <scientific_name>Theileria annulata</scientific_name>
-                                  <rank>species</rank>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">5875</id>
-                                  <code>THEPA</code>
-                                  <scientific_name>Theileria parva</scientific_name>
-                                  <common_name>East coast fever infection agent</common_name>
-                                  <rank>species</rank>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">5865</id>
-                                <code>BABBO</code>
-                                <scientific_name>Babesia bovis</scientific_name>
-                                <rank>species</rank>
-                                <uri>http://www.perulactea.com/wp-content/uploads/2012/03/Babesia_bovis.jpg</uri>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">423054</id>
-                            <scientific_name>Eimeriorina</scientific_name>
-                            <rank>suborder</rank>
-                          </taxonomy>
-                          <reference doi="10.1093/molbev/msn213">
-                            <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>
-                          </reference>
-                          <reference>
-                          </reference>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">5802</id>
-                              <code>EIMTE</code>
-                              <scientific_name>Eimeria tenella</scientific_name>
-                              <common_name>Coccidian parasite</common_name>
-                              <rank>species</rank>
-                              <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>
-                            </taxonomy>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">5811</id>
-                              <code>TOXGO</code>
-                              <scientific_name>Toxoplasma gondii</scientific_name>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">5806</id>
-                          <scientific_name>Cryptosporidium</scientific_name>
-                          <rank>genus</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">237895</id>
-                            <code>CRYHO</code>
-                            <scientific_name>Cryptosporidium hominis</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">5807</id>
-                            <code>CRYPV</code>
-                            <scientific_name>Cryptosporidium parvum</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">353152</id>
-                            <code>CRYPI</code>
-                            <scientific_name>Cryptosporidium parvum (strain Iowa II)</scientific_name>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <name>Dinoflagellates &amp; Perkinsus</name>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">2864</id>
-                          <scientific_name>Dinophyceae</scientific_name>
-                          <rank>class</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">2866</id>
-                            <code>CRYCO</code>
-                            <scientific_name>Crypthecodinium cohnii</scientific_name>
-                            <common_name>Dinoflagellate</common_name>
-                            <rank>species</rank>
-                            <uri>http://www.lamolina.net/image/DHAcell.jpg</uri>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">2923</id>
-                            <code>THOHE</code>
-                            <scientific_name>Thoracosphaera heimii</scientific_name>
-                            <common_name>Dinoflagellate</common_name>
-                            <rank>species</rank>
-                            <uri>http://planktonnet.awi.de/repository/rawdata-PlanktonNet2/viewable/fjouenne_21806a_20080123172436_small.jpg</uri>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">423536</id>
-                          <code>PERM5</code>
-                          <scientific_name>Perkinsus marinus (strain ATCC 50983 / TXsc)</scientific_name>
-                          <uri>http://www.eurl-mollusc.eu/var/storage/images/medias-ifremer/medias-crlmollusc/images/perkinsus-zoosporangium/633746-1-eng-GB/Perkinsus-zoosporangium.jpg</uri>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">5878</id>
-                      <scientific_name>Ciliophora</scientific_name>
-                    </taxonomy>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">431838</id>
-                        <scientific_name>Intramacronucleata</scientific_name>
-                        <rank>subphylum</rank>
-                      </taxonomy>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">6020</id>
-                          <scientific_name>Oligohymenophorea</scientific_name>
-                          <rank>class</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">31277</id>
-                            <scientific_name>Hymenostomatida</scientific_name>
-                            <rank>order</rank>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">857967</id>
-                              <code>ICHMG</code>
-                              <scientific_name>Ichthyophthirius multifiliis (strain G5)</scientific_name>
-                              <common_name>White spot disease agent</common_name>
-                              <synonym>Ich</synonym>
-                              <uri>http://www.vet.cornell.edu/microbiology/FishDisease/aquaticprog/highlights/ich/ICH2.JPG</uri>
-                            </taxonomy>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">312017</id>
-                              <code>TETTS</code>
-                              <scientific_name>Tetrahymena thermophila (strain SB210)</scientific_name>
-                              <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/08/Tetrahymena_thermophila.png/220px-Tetrahymena_thermophila.png</uri>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">5888</id>
-                            <code>PARTE</code>
-                            <scientific_name>Paramecium tetraurelia</scientific_name>
-                            <rank>species</rank>
-                            <uri>http://research.plattsburgh.edu/ciliates/images/jdopics208.jpg</uri>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">1172189</id>
-                          <code>OTRXX</code>
-                          <scientific_name>Oxytricha trifallax</scientific_name>
-                          <authority>Stein, 1859</authority>
-                          <rank>species</rank>
-                          <uri>http://centexnaturalist.com/foldermainmenus/sfprotists/folderprotozoans/oxytricha04.gif</uri>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">5961</id>
-                        <code>BLEJA</code>
-                        <scientific_name>Blepharisma japonicum</scientific_name>
-                        <rank>species</rank>
-                        <uri>http://upload.wikimedia.org/wikipedia/commons/2/23/Mikrofoto.de-Blepharisma_japonicum_15.jpg</uri>
-                        <uri>http://protist.i.hosei.ac.jp/PDB/PCD0473/C/016.jpg</uri>
-                      </taxonomy>
-                    </clade>
-                  </clade>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">33634</id>
-                    <scientific_name>Stramenopiles</scientific_name>
-                    <authority>Patterson 1989, emend. Adl et al. 2005</authority>
-                    <synonym>Chromophyta</synonym>
-                    <synonym>heterokonts</synonym>
-                    <synonym>Heterokontophyta</synonym>
-                  </taxonomy>
-                  <clade>
-                    <name>Labyrinthulomycetes &amp; Ochrophyta &amp; Oomycetes</name>
-                    <clade>
-                      <name>Ochrophyta &amp; Oomycetes</name>
-                      <reference doi="10.1016/j.protis.2008.11.004">
-                        <desc>Seven Gene Phylogeny of Heterokonts</desc>
-                      </reference>
-                      <reference>
-                      </reference>
-                      <clade>
-                        <taxonomy>
-                          <scientific_name>Ochrophyta</scientific_name>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">2836</id>
-                            <scientific_name>Bacillariophyta</scientific_name>
-                            <common_name>diatoms</common_name>
-                            <rank>class</rank>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">33850</id>
-                              <scientific_name>Bacillariophycidae</scientific_name>
-                            </taxonomy>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">186039</id>
-                                <code>FCYXX</code>
-                                <scientific_name>Fragilariopsis cylindrus</scientific_name>
-                                <authority>Krieger</authority>
-                                <synonym>Nitzschia cylindrus</synonym>
-                                <rank>species</rank>
-                                <uri>http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg</uri>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">2850</id>
-                                <code>PHATR</code>
-                                <scientific_name>Phaeodactylum tricornutum</scientific_name>
-                                <authority>Bohlin</authority>
-                                <rank>species</rank>
-                                <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Phaeodactylum_tricornutum.png/637px-Phaeodactylum_tricornutum.png</uri>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">35127</id>
-                              <scientific_name>Thalassiosira</scientific_name>
-                              <rank>genus</rank>
-                            </taxonomy>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">35128</id>
-                                <code>THAPS</code>
-                                <scientific_name>Thalassiosira pseudonana</scientific_name>
-                                <authority>Hasle &amp; Heimdal</authority>
-                                <common_name>Marine diatom</common_name>
-                                <synonym>Cyclotella nana</synonym>
-                                <rank>species</rank>
-                                <uri>http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg</uri>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">159749</id>
-                                <code>THAOC</code>
-                                <scientific_name>Thalassiosira oceanica</scientific_name>
-                                <common_name>Marine diatom</common_name>
-                                <rank>species</rank>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <name>Pelagophyceae &amp; Phaeophyceae</name>
-                          <reference doi="10.1128/AEM.06952-11">
-                            <desc>Distribution patterns and phylogeny of marine stramenopiles in the north pacific ocean</desc>
-                          </reference>
-                          <reference>
-                          </reference>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">44056</id>
-                              <code>AURAN</code>
-                              <scientific_name>Aureococcus anophagefferens</scientific_name>
-                              <authority>Hargraves &amp; Sieburth</authority>
-                              <common_name>Harmful bloom alga</common_name>
-                              <rank>species</rank>
-                              <uri>http://www.dec.ny.gov/images/fish_marine_images/alex1.jpg</uri>
-                            </taxonomy>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">2880</id>
-                              <code>ECTSI</code>
-                              <scientific_name>Ectocarpus siliculosus</scientific_name>
-                              <common_name>Brown alga</common_name>
-                              <rank>species</rank>
-                              <uri>http://www.research.kobe-u.ac.jp/rcis-ku-macc/j.p.folder/photo/KU-1110%20Ectocarpus%20siliculosus%20b%20x20.jpg</uri>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">4762</id>
-                          <scientific_name>Oomycetes</scientific_name>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">4776</id>
-                            <scientific_name>Peronosporales</scientific_name>
-                            <rank>order</rank>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">4783</id>
-                              <scientific_name>Phytophthora</scientific_name>
-                              <rank>genus</rank>
-                            </taxonomy>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">4787</id>
-                                <code>PHYIN</code>
-                                <scientific_name>Phytophthora infestans</scientific_name>
-                                <authority>(Mont.) de Bary 1876</authority>
-                                <common_name>Potato late blight fungus</common_name>
-                                <rank>species</rank>
-                                <uri>http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg</uri>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">164328</id>
-                                <code>PHYRM</code>
-                                <scientific_name>Phytophthora ramorum</scientific_name>
-                                <common_name>Sudden oak death agent</common_name>
-                                <rank>species</rank>
-                                <uri>http://genome.jgi-psf.org/Phyra1_1/pramorum.jpg</uri>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">67593</id>
-                                <code>PHYSO</code>
-                                <scientific_name>Phytophthora sojae</scientific_name>
-                                <common_name>Soybean stem and root rot agent</common_name>
-                                <synonym>Phytophthora megasperma f. sp. glycines</synonym>
-                                <rank>species</rank>
-                                <uri>http://www.apsnet.org/publications/imageresources/PublishingImages/2003/IW000025b.jpg</uri>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">4785</id>
-                                <code>PHYCI</code>
-                                <scientific_name>Phytophthora cinnamomi</scientific_name>
-                                <common_name>Cinnamon fungus</common_name>
-                                <rank>species</rank>
-                                <uri>http://genome.jgi.doe.gov/public/Phyci1/Pcinnamomi_hyphae_and_chlamydospores.jpg</uri>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">4784</id>
-                                <code>PHYCP</code>
-                                <scientific_name>Phytophthora capsici</scientific_name>
-                                <rank>species</rank>
-                                <uri>http://upload.wikimedia.org/wikipedia/commons/2/24/Phytophthora_capsici_sporangia.jpg</uri>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">559515</id>
-                              <code>HYAAE</code>
-                              <scientific_name>Hyaloperonospora arabidopsidis (strain Emoy2)</scientific_name>
-                              <common_name>Downy mildew agent</common_name>
-                              <synonym>Peronospora arabidopsidis</synonym>
-                              <uri>http://www.nature.com/nature/journal/v470/n7332/images/470044a-f1.2.jpg</uri>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">65071</id>
-                            <code>PYTUL</code>
-                            <scientific_name>Pythium ultimum</scientific_name>
-                            <rank>species</rank>
-                            <uri>http://www.plantpath.cornell.edu/labs/enelson/images/Germ_Sporangia(small).jpg</uri>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">33674</id>
-                        <scientific_name>Thraustochytriaceae</scientific_name>
-                        <synonym>Thraustochytriales</synonym>
-                        <rank>family</rank>
-                      </taxonomy>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">702273</id>
-                          <code>AKEXX</code>
-                          <scientific_name>Aplanochytrium kerguelense PBS07</scientific_name>
-                          <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg</uri>
-                        </taxonomy>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">876976</id>
-                          <code>SAGXX</code>
-                          <scientific_name>Schizochytrium aggregatum ATCC 28209</scientific_name>
-                          <uri>http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG</uri>
-                        </taxonomy>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">87102</id>
-                          <code>ALIXX</code>
-                          <scientific_name>Aurantiochytrium limacinum</scientific_name>
-                          <synonym>Schizochytrium limacinum</synonym>
-                          <rank>species</rank>
-                          <uri>http://upload.wikimedia.org/wikipedia/commons/3/38/Aurantiochytrium_limacinum_SR21.jpg</uri>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">12968</id>
-                      <code>BLAHO</code>
-                      <scientific_name>Blastocystis hominis</scientific_name>
-                      <rank>species</rank>
-                    </taxonomy>
-                  </clade>
-                </clade>
-              </clade>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">543769</id>
-                  <scientific_name>Rhizaria</scientific_name>
-                </taxonomy>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">71427</id>
-                    <scientific_name>Allogromia laticollaris</scientific_name>
-                    <rank>species</rank>
-                    <uri>http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg</uri>
-                  </taxonomy>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">227086</id>
-                    <code>BIGNA</code>
-                    <scientific_name>Bigelowiella natans</scientific_name>
-                    <common_name>Pedinomonas minutissima</common_name>
-                    <synonym>Chlorarachnion sp. (strain CCMP621)</synonym>
-                    <synonym>Pedinomonas minutissima</synonym>
-                    <rank>species</rank>
-                    <uri>http://genome.jgi.doe.gov/Bigna1/Bigna1.jpg</uri>
-                  </taxonomy>
-                </clade>
-              </clade>
-            </clade>
-          </clade>
-          <clade>
-            <name>Excavata</name>
-            <reference doi="10.1038/nature04546">
-            </reference>
-            <clade>
-              <name>Kinetoplastida &amp; Heterolobosea</name>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">5653</id>
-                  <scientific_name>Kinetoplastida</scientific_name>
-                  <common_name>kinetoplasts</common_name>
-                  <rank>order</rank>
-                </taxonomy>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">5654</id>
-                    <scientific_name>Trypanosomatidae</scientific_name>
-                    <rank>family</rank>
-                  </taxonomy>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">5690</id>
-                      <scientific_name>Trypanosoma</scientific_name>
-                      <rank>genus</rank>
-                    </taxonomy>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">999953</id>
-                        <code>TRYB2</code>
-                        <scientific_name>Trypanosoma brucei brucei (strain 927/4 GUTat10.1)</scientific_name>
-                        <rank>strain</rank>
-                      </taxonomy>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">5693</id>
-                        <code>TRYCR</code>
-                        <scientific_name>Trypanosoma cruzi</scientific_name>
-                        <rank>species</rank>
-                        <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/0b/Trypanosoma_cruzi_crithidia.jpeg/220px-Trypanosoma_cruzi_crithidia.jpeg</uri>
-                      </taxonomy>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">5658</id>
-                      <scientific_name>Leishmania</scientific_name>
-                      <rank>genus</rank>
-                    </taxonomy>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">5664</id>
-                        <code>LEIMA</code>
-                        <scientific_name>Leishmania major</scientific_name>
-                        <rank>species</rank>
-                      </taxonomy>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">5671</id>
-                        <code>LEIIN</code>
-                        <scientific_name>Leishmania infantum</scientific_name>
-                        <rank>species</rank>
-                      </taxonomy>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">5660</id>
-                        <code>LEIBR</code>
-                        <scientific_name>Leishmania braziliensis</scientific_name>
-                        <rank>species</rank>
-                      </taxonomy>
-                    </clade>
-                  </clade>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">75058</id>
-                    <code>BODSA</code>
-                    <scientific_name>Bodo saltans</scientific_name>
-                    <common_name>Flagellated protozoan</common_name>
-                    <rank>species</rank>
-                    <uri>http://protist.i.hosei.ac.jp/pdb/images/Mastigophora/Bodo/sp_1f.jpg</uri>
-                  </taxonomy>
-                </clade>
-              </clade>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">5762</id>
-                  <code>NAEGR</code>
-                  <scientific_name>Naegleria gruberi</scientific_name>
-                  <common_name>Amoeba</common_name>
-                  <rank>species</rank>
-                  <uri>http://media.npr.org/assets/news/2010/03/05/amoeba_custom-a24a7e20b8d9f1b681cf6a25d0d046d84f238349-s3.jpg</uri>
-                </taxonomy>
-              </clade>
-            </clade>
-            <clade>
-              <name>Metamonada</name>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">184922</id>
-                  <code>GIAIC</code>
-                  <scientific_name>Giardia intestinalis (strain ATCC 50803 / WB clone C6)</scientific_name>
-                  <synonym>Giardia intestinalis (strain ATCC 50803 / WB clone C6)</synonym>
-                  <synonym>Giardia lamblia</synonym>
-                  <rank>species</rank>
-                </taxonomy>
-              </clade>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">5722</id>
-                  <code>TRIVA</code>
-                  <scientific_name>Trichomonas vaginalis</scientific_name>
-                  <rank>species</rank>
-                </taxonomy>
-              </clade>
-            </clade>
-          </clade>
-          <clade>
-            <taxonomy>
-              <id provider="uniprot">554296</id>
-              <scientific_name>Apusozoa</scientific_name>
-            </taxonomy>
-            <reference doi="10.1016/j.protis.2008.06.002">
-              <desc>Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov</desc>
-            </reference>
-            <clade>
-              <taxonomy>
-                <id provider="uniprot">554453</id>
-                <scientific_name>Planomonas micra</scientific_name>
-                <authority>(Cavalier-Smith, 2008) Heiss, Walker &amp; Simpson 2010</authority>
-                <synonym>Apusomonadidae sp. micra</synonym>
-                <rank>species</rank>
-              </taxonomy>
-            </clade>
-            <clade>
-              <taxonomy>
-                <id provider="uniprot">529818</id>
-                <code>TTRXX</code>
-                <scientific_name>Thecamonas trahens</scientific_name>
-                <authority>Larsen &amp; Patterson 1990</authority>
-                <synonym>Amastigomonas trahens</synonym>
-                <rank>species</rank>
-                <uri>http://bioinformatica.upf.edu/2011/projectes11/Cx/images/pro_t_tra.jpg</uri>
-              </taxonomy>
-            </clade>
-          </clade>
-        </clade>
-      </clade>
-      <clade>
-        <taxonomy>
-          <id provider="uniprot">2157</id>
-          <scientific_name>Archaea</scientific_name>
-          <rank>superkingdom</rank>
-        </taxonomy>
-        <clade>
-          <name>a_62</name>
-          <clade>
-            <name>a_56</name>
-            <clade>
-              <taxonomy>
-                <id provider="uniprot">28890</id>
-                <scientific_name>Euryarchaeota</scientific_name>
-                <rank>phylum</rank>
-              </taxonomy>
-              <clade>
-                <name>a_44</name>
-                <clade>
-                  <name>a_28</name>
-                  <clade>
-                    <name>a_26</name>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">224756</id>
-                        <scientific_name>Methanomicrobia</scientific_name>
-                        <rank>class</rank>
-                      </taxonomy>
-                      <clade>
-                        <name>a_14</name>
-                        <clade>
-                          <name>a_12</name>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">2206</id>
-                              <scientific_name>Methanosarcinaceae</scientific_name>
-                              <rank>family</rank>
-                            </taxonomy>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">2207</id>
-                                <scientific_name>Methanosarcina</scientific_name>
-                                <rank>genus</rank>
-                              </taxonomy>
-                              <clade>
-                                <name>a_2</name>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">2214</id>
-                                    <code>METAC</code>
-                                    <scientific_name>Methanosarcina acetivorans</scientific_name>
-                                    <rank>species</rank>
-                                  </taxonomy>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">269797</id>
-                                    <code>METBF</code>
-                                    <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">2209</id>
-                                  <code>METMA</code>
-                                  <scientific_name>Methanosarcina mazei</scientific_name>
-                                  <synonym>Methanosarcina frisia</synonym>
-                                  <rank>species</rank>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">259564</id>
-                                <code>METBU</code>
-                                <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <name>a_11</name>
-                            <taxonomy>
-                              <id provider="uniprot">2191</id>
-                              <scientific_name>Methanomicrobiales</scientific_name>
-                              <rank>order</rank>
-                            </taxonomy>
-                            <clade>
-                              <name>a_9</name>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">456442</id>
-                                  <code>METB6</code>
-                                  <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">2203</id>
-                                  <code>METHU</code>
-                                  <scientific_name>Methanospirillum hungatei</scientific_name>
-                                  <rank>species</rank>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">368407</id>
-                                <code>METMJ</code>
-                                <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">410358</id>
-                            <code>METLZ</code>
-                            <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">349307</id>
-                          <code>METTP</code>
-                          <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>
-                          <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">2236</id>
-                        <scientific_name>Halobacteriaceae</scientific_name>
-                        <rank>family</rank>
-                      </taxonomy>
-                      <clade>
-                        <name>a_23</name>
-                        <clade>
-                          <name>a_19</name>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">2238</id>
-                              <code>HALMA</code>
-                              <scientific_name>Haloarcula marismortui</scientific_name>
-                              <synonym>Halobacterium marismortui</synonym>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">2257</id>
-                              <code>NATPH</code>
-                              <scientific_name>Natronomonas pharaonis</scientific_name>
-                              <common_name>Natronobacterium pharaonis</common_name>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <name>a_22</name>
-                          <taxonomy>
-                            <id provider="uniprot">2239</id>
-                            <scientific_name>Halobacterium</scientific_name>
-                            <rank>genus</rank>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">478009</id>
-                              <code>HALS3</code>
-                              <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>
-                            </taxonomy>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">2243</id>
-                              <code>HALSP</code>
-                              <scientific_name>Halobacterium sp.</scientific_name>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">362976</id>
-                          <code>HALWD</code>
-                          <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">224325</id>
-                      <code>ARCFU</code>
-                      <scientific_name>Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)</scientific_name>
-                      <rank>strain</rank>
-                    </taxonomy>
-                  </clade>
-                </clade>
-                <clade>
-                  <name>a_43</name>
-                  <clade>
-                    <name>a_41</name>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">2182</id>
-                        <scientific_name>Methanococcales</scientific_name>
-                        <rank>order</rank>
-                      </taxonomy>
-                      <clade>
-                        <name>a_31</name>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">2190</id>
-                            <code>METJA</code>
-                            <scientific_name>Methanocaldococcus jannaschii</scientific_name>
-                            <synonym>Methanococcus jannaschii</synonym>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">419665</id>
-                            <code>META3</code>
-                            <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <name>a_34</name>
-                        <taxonomy>
-                          <id provider="uniprot">2184</id>
-                          <scientific_name>Methanococcus</scientific_name>
-                          <rank>genus</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">39152</id>
-                            <code>METMP</code>
-                            <scientific_name>Methanococcus maripaludis</scientific_name>
-                            <synonym>Methanococcus deltae</synonym>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">406327</id>
-                            <code>METVS</code>
-                            <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <name>a_40</name>
-                      <taxonomy>
-                        <id provider="uniprot">2159</id>
-                        <scientific_name>Methanobacteriaceae</scientific_name>
-                        <rank>family</rank>
-                      </taxonomy>
-                      <clade>
-                        <name>a_38</name>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">420247</id>
-                            <code>METS3</code>
-                            <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">339860</id>
-                            <code>METST</code>
-                            <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">187420</id>
-                          <code>METTH</code>
-                          <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>
-                          <synonym>Methanobacterium thermoautotrophicum</synonym>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">2320</id>
-                      <code>METKA</code>
-                      <scientific_name>Methanopyrus kandleri</scientific_name>
-                      <rank>species</rank>
-                    </taxonomy>
-                  </clade>
-                </clade>
-              </clade>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">2259</id>
-                  <scientific_name>Thermococcaceae</scientific_name>
-                  <rank>family</rank>
-                </taxonomy>
-                <clade>
-                  <name>PYRFU &amp; THEKO &amp; PYRAB &amp; PYRHO</name>
-                  <clade>
-                    <name>PYRFU &amp; THEKO</name>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">2261</id>
-                        <code>PYRFU</code>
-                        <scientific_name>Pyrococcus furiosus</scientific_name>
-                        <rank>species</rank>
-                      </taxonomy>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">69014</id>
-                        <code>THEKO</code>
-                        <scientific_name>Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>
-                        <synonym>Pyrococcus kodakaraensis (strain KOD1)</synonym>
-                      </taxonomy>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">2260</id>
-                      <scientific_name>Pyrococcus</scientific_name>
-                      <rank>genus</rank>
-                    </taxonomy>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">29292</id>
-                        <code>PYRAB</code>
-                        <scientific_name>Pyrococcus abyssi</scientific_name>
-                        <rank>species</rank>
-                      </taxonomy>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">53953</id>
-                        <code>PYRHO</code>
-                        <scientific_name>Pyrococcus horikoshii</scientific_name>
-                        <rank>species</rank>
-                      </taxonomy>
-                    </clade>
-                  </clade>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">523850</id>
-                    <code>THEON</code>
-                    <scientific_name>Thermococcus onnurineus (strain NA1)</scientific_name>
-                  </taxonomy>
-                </clade>
-              </clade>
-            </clade>
-            <clade>
-              <name>a_55</name>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">228908</id>
-                  <code>NANEQ</code>
-                  <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>
-                </taxonomy>
-              </clade>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">436308</id>
-                  <code>NITMS</code>
-                  <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>
-                </taxonomy>
-              </clade>
-            </clade>
-          </clade>
-          <clade>
-            <taxonomy>
-              <id provider="uniprot">2301</id>
-              <scientific_name>Thermoplasmatales</scientific_name>
-              <rank>order</rank>
-            </taxonomy>
-            <clade>
-              <name>a_59</name>
-              <taxonomy>
-                <id provider="uniprot">2302</id>
-                <scientific_name>Thermoplasma</scientific_name>
-                <rank>genus</rank>
-              </taxonomy>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">273075</id>
-                  <code>THEAC</code>
-                  <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>
-                </taxonomy>
-              </clade>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">273116</id>
-                  <code>THEVO</code>
-                  <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>
-                </taxonomy>
-              </clade>
-            </clade>
-            <clade>
-              <taxonomy>
-                <id provider="uniprot">263820</id>
-                <code>PICTO</code>
-                <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>
-              </taxonomy>
-            </clade>
-          </clade>
-        </clade>
-        <clade>
-          <name>a_93</name>
-          <clade>
-            <taxonomy>
-              <id provider="uniprot">183924</id>
-              <scientific_name>Thermoprotei</scientific_name>
-              <rank>class</rank>
-            </taxonomy>
-            <clade>
-              <name>a_83</name>
-              <clade>
-                <name>a_81</name>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">2267</id>
-                    <scientific_name>Thermoproteaceae</scientific_name>
-                    <rank>family</rank>
-                  </taxonomy>
-                  <clade>
-                    <name>a_71</name>
-                    <clade>
-                      <name>a_67</name>
-                      <taxonomy>
-                        <id provider="uniprot">2276</id>
-                        <scientific_name>Pyrobaculum</scientific_name>
-                        <rank>genus</rank>
-                      </taxonomy>
-                      <clade>
-                        <name>a_65</name>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">340102</id>
-                            <code>PYRAR</code>
-                            <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">410359</id>
-                            <code>PYRCJ</code>
-                            <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">13773</id>
-                          <code>PYRAE</code>
-                          <scientific_name>Pyrobaculum aerophilum</scientific_name>
-                          <rank>species</rank>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <name>a_70</name>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">384616</id>
-                          <code>PYRIL</code>
-                          <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>
-                        </taxonomy>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">444157</id>
-                          <code>THENV</code>
-                          <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>
-                          <synonym>Thermoproteus neutrophilus</synonym>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">397948</id>
-                      <code>CALMQ</code>
-                      <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>
-                    </taxonomy>
-                  </clade>
-                </clade>
-                <clade>
-                  <name>a_80</name>
-                  <taxonomy>
-                    <id provider="uniprot">118883</id>
-                    <scientific_name>Sulfolobaceae</scientific_name>
-                    <rank>family</rank>
-                  </taxonomy>
-                  <clade>
-                    <name>a_78</name>
-                    <taxonomy>
-                      <id provider="uniprot">2284</id>
-                      <scientific_name>Sulfolobus</scientific_name>
-                      <rank>genus</rank>
-                    </taxonomy>
-                    <clade>
-                      <name>a_76</name>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">2285</id>
-                          <code>SULAC</code>
-                          <scientific_name>Sulfolobus acidocaldarius</scientific_name>
-                          <rank>species</rank>
-                        </taxonomy>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">273063</id>
-                          <code>SULTO</code>
-                          <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">2287</id>
-                        <code>SULSO</code>
-                        <scientific_name>Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)</scientific_name>
-                        <synonym>Sulfolobus solfataricus P2</synonym>
-                        <rank>strain</rank>
-                      </taxonomy>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">399549</id>
-                      <code>METS5</code>
-                      <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>
-                    </taxonomy>
-                  </clade>
-                </clade>
-              </clade>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">56636</id>
-                  <code>AERPE</code>
-                  <scientific_name>Aeropyrum pernix</scientific_name>
-                  <rank>species</rank>
-                </taxonomy>
-              </clade>
-            </clade>
-            <clade>
-              <name>a_90</name>
-              <clade>
-                <name>a_88</name>
-                <clade>
-                  <name>a_86</name>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">399550</id>
-                      <code>STAMF</code>
-                      <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>
-                    </taxonomy>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">368408</id>
-                      <code>THEPD</code>
-                      <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>
-                    </taxonomy>
-                  </clade>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">415426</id>
-                    <code>HYPBU</code>
-                    <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>
-                  </taxonomy>
-                </clade>
-              </clade>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">453591</id>
-                  <code>IGNH4</code>
-                  <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>
-                </taxonomy>
-              </clade>
-            </clade>
-          </clade>
-          <clade>
-            <taxonomy>
-              <id provider="uniprot">374847</id>
-              <code>KORCO</code>
-              <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>
-            </taxonomy>
-          </clade>
-        </clade>
-      </clade>
-    </clade>
-    <clade>
-      <taxonomy>
-        <id provider="uniprot">2</id>
-        <scientific_name>Bacteria</scientific_name>
-        <rank>superkingdom</rank>
-      </taxonomy>
-      <clade>
-        <name>b_278</name>
-        <clade>
-          <name>b_268</name>
-          <clade>
-            <name>b_226</name>
-            <clade>
-              <name>b_200</name>
-              <clade>
-                <name>b_194</name>
-                <clade>
-                  <name>b_104</name>
-                  <clade>
-                    <name>b_80</name>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">1224</id>
-                        <scientific_name>Proteobacteria</scientific_name>
-                        <rank>phylum</rank>
-                      </taxonomy>
-                      <clade>
-                        <name>b_52</name>
-                        <clade>
-                          <name>b_44</name>
-                          <clade>
-                            <name>b_30</name>
-                            <clade>
-                              <name>b_24</name>
-                              <taxonomy>
-                                <id provider="uniprot">1236</id>
-                                <scientific_name>Gammaproteobacteria</scientific_name>
-                                <rank>class</rank>
-                              </taxonomy>
-                              <clade>
-                                <name>b_16</name>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">543</id>
-                                    <scientific_name>Enterobacteriaceae</scientific_name>
-                                    <rank>family</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <name>b_8</name>
-                                    <clade>
-                                      <name>b_6</name>
-                                      <clade>
-                                        <name>b_4</name>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">561</id>
-                                            <scientific_name>Escherichia</scientific_name>
-                                            <rank>genus</rank>
-                                          </taxonomy>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">83333</id>
-                                              <code>ECOLI</code>
-                                              <scientific_name>Escherichia coli (strain K12)</scientific_name>
-                                            </taxonomy>
-                                          </clade>
-                                          <clade>
-                                            <taxonomy>
-                                              <id provider="uniprot">83334</id>
-                                              <code>ECO57</code>
-                                              <scientific_name>Escherichia coli O157:H7</scientific_name>
-                                            </taxonomy>
-                                          </clade>
-                                        </clade>
-                                        <clade>
-                                          <taxonomy>
-                                            <id provider="uniprot">623</id>
-                                            <code>SHIFL</code>
-                                            <scientific_name>Shigella flexneri</scientific_name>
-                                            <rank>species</rank>
-                                          </taxonomy>
-                                        </clade>
-                                      </clade>
-                                      <clade>
-                                        <taxonomy>
-                                          <id provider="uniprot">90371</id>
-                                          <code>SALTY</code>
-                                          <scientific_name>Salmonella typhimurium</scientific_name>
-                                        </taxonomy>
-                                      </clade>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">632</id>
-                                        <code>YERPE</code>
-                                        <scientific_name>Yersinia pestis</scientific_name>
-                                        <rank>species</rank>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">29488</id>
-                                      <code>PHOLU</code>
-                                      <scientific_name>Photorhabdus luminescens</scientific_name>
-                                      <synonym>Xenorhabdus luminescens</synonym>
-                                      <rank>species</rank>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <name>b_15</name>
-                                  <clade>
-                                    <name>b_13</name>
-                                    <taxonomy>
-                                      <id provider="uniprot">641</id>
-                                      <scientific_name>Vibrionaceae</scientific_name>
-                                      <rank>family</rank>
-                                    </taxonomy>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">74109</id>
-                                        <code>PHOPR</code>
-                                        <scientific_name>Photobacterium profundum</scientific_name>
-                                        <synonym>Photobacterium sp. (strain SS9)</synonym>
-                                        <rank>species</rank>
-                                      </taxonomy>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">666</id>
-                                        <code>VIBCH</code>
-                                        <scientific_name>Vibrio cholerae</scientific_name>
-                                        <rank>species</rank>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">318161</id>
-                                      <code>SHEDO</code>
-                                      <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <name>b_23</name>
-                                <clade>
-                                  <name>b_21</name>
-                                  <taxonomy>
-                                    <id provider="uniprot">286</id>
-                                    <scientific_name>Pseudomonas</scientific_name>
-                                    <rank>genus</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <name>b_19</name>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">220664</id>
-                                        <code>PSEF5</code>
-                                        <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>
-                                      </taxonomy>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">205922</id>
-                                        <code>PSEPF</code>
-                                        <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">287</id>
-                                      <code>PSEAE</code>
-                                      <scientific_name>Pseudomonas aeruginosa</scientific_name>
-                                      <rank>species</rank>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">290398</id>
-                                    <code>CHRSD</code>
-                                    <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <name>b_29</name>
-                              <taxonomy>
-                                <id provider="uniprot">28216</id>
-                                <scientific_name>Betaproteobacteria</scientific_name>
-                                <rank>class</rank>
-                              </taxonomy>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">159087</id>
-                                  <code>DECAR</code>
-                                  <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">266264</id>
-                                  <code>RALME</code>
-                                  <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <name>b_43</name>
-                            <clade>
-                              <name>b_41</name>
-                              <clade>
-                                <name>b_35</name>
-                                <taxonomy>
-                                  <id provider="uniprot">28216</id>
-                                  <scientific_name>Betaproteobacteria</scientific_name>
-                                  <rank>class</rank>
-                                </taxonomy>
-                                <clade>
-                                  <name>b_33</name>
-                                  <taxonomy>
-                                    <id provider="uniprot">206379</id>
-                                    <scientific_name>Nitrosomonadaceae</scientific_name>
-                                    <rank>family</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">915</id>
-                                      <code>NITEU</code>
-                                      <scientific_name>Nitrosomonas europaea</scientific_name>
-                                      <rank>species</rank>
-                                    </taxonomy>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">323848</id>
-                                      <code>NITMU</code>
-                                      <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">36861</id>
-                                    <code>THIDE</code>
-                                    <scientific_name>Thiobacillus denitrificans</scientific_name>
-                                    <rank>species</rank>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <name>b_40</name>
-                                <taxonomy>
-                                  <id provider="uniprot">135613</id>
-                                  <scientific_name>Chromatiales</scientific_name>
-                                  <rank>order</rank>
-                                </taxonomy>
-                                <clade>
-                                  <name>b_38</name>
-                                  <taxonomy>
-                                    <id provider="uniprot">72276</id>
-                                    <scientific_name>Ectothiorhodospiraceae</scientific_name>
-                                    <common_name>purple sulfur bacteria</common_name>
-                                    <rank>family</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">187272</id>
-                                      <code>ALHEH</code>
-                                      <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>
-                                    </taxonomy>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">349124</id>
-                                      <code>HALHL</code>
-                                      <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>
-                                      <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">323261</id>
-                                    <code>NITOC</code>
-                                    <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">317025</id>
-                                <code>THICR</code>
-                                <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <name>b_51</name>
-                          <taxonomy>
-                            <id provider="uniprot">1236</id>
-                            <scientific_name>Gammaproteobacteria</scientific_name>
-                            <rank>class</rank>
-                          </taxonomy>
-                          <clade>
-                            <name>b_47</name>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">135577</id>
-                                <code>IDILO</code>
-                                <scientific_name>Idiomarina loihiensis</scientific_name>
-                                <rank>species</rank>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">446</id>
-                                <code>LEGPN</code>
-                                <scientific_name>Legionella pneumophila</scientific_name>
-                                <rank>species</rank>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <name>b_50</name>
-                            <taxonomy>
-                              <id provider="uniprot">32033</id>
-                              <scientific_name>Xanthomonadaceae</scientific_name>
-                              <rank>family</rank>
-                            </taxonomy>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">190486</id>
-                                <code>XANAC</code>
-                                <scientific_name>Xanthomonas axonopodis pv. citri (strain 306)</scientific_name>
-                                <synonym>Xanthomonas citri pv. citri str. 306</synonym>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">183190</id>
-                                <code>XYLFT</code>
-                                <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <name>b_71</name>
-                        <taxonomy>
-                          <id provider="uniprot">28211</id>
-                          <scientific_name>Alphaproteobacteria</scientific_name>
-                          <rank>class</rank>
-                        </taxonomy>
-                        <clade>
-                          <name>b_67</name>
-                          <clade>
-                            <name>b_65</name>
-                            <clade>
-                              <name>b_61</name>
-                              <taxonomy>
-                                <id provider="uniprot">356</id>
-                                <scientific_name>Rhizobiales</scientific_name>
-                                <rank>order</rank>
-                              </taxonomy>
-                              <clade>
-                                <name>b_57</name>
-                                <taxonomy>
-                                  <id provider="uniprot">227290</id>
-                                  <scientific_name>Rhizobium/Agrobacterium group</scientific_name>
-                                </taxonomy>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">176299</id>
-                                    <code>AGRT5</code>
-                                    <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>
-                                  </taxonomy>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">347834</id>
-                                    <code>RHIEC</code>
-                                    <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <name>b_60</name>
-                                <taxonomy>
-                                  <id provider="uniprot">41294</id>
-                                  <scientific_name>Bradyrhizobiaceae</scientific_name>
-                                  <rank>family</rank>
-                                </taxonomy>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">375</id>
-                                    <code>BRAJA</code>
-                                    <scientific_name>Bradyrhizobium japonicum</scientific_name>
-                                    <rank>species</rank>
-                                  </taxonomy>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">395960</id>
-                                    <code>RHOPT</code>
-                                    <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <name>b_64</name>
-                              <taxonomy>
-                                <id provider="uniprot">31989</id>
-                                <scientific_name>Rhodobacteraceae</scientific_name>
-                                <rank>family</rank>
-                              </taxonomy>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">349101</id>
-                                  <code>RHOS1</code>
-                                  <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">375451</id>
-                                  <code>ROSDO</code>
-                                  <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>
-                                  <common_name>Erythrobacter sp. (strain OCh 114)</common_name>
-                                  <synonym>Roseobacter denitrificans</synonym>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">155892</id>
-                              <code>CAUCR</code>
-                              <scientific_name>Caulobacter crescentus</scientific_name>
-                              <synonym>Caulobacter vibrioides</synonym>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <name>b_70</name>
-                          <taxonomy>
-                            <id provider="uniprot">204441</id>
-                            <scientific_name>Rhodospirillales</scientific_name>
-                            <rank>order</rank>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">524</id>
-                              <code>ACICY</code>
-                              <scientific_name>Acidiphilium cryptum</scientific_name>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">1085</id>
-                              <code>RHORU</code>
-                              <scientific_name>Rhodospirillum rubrum</scientific_name>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <name>b_79</name>
-                      <clade>
-                        <name>b_77</name>
-                        <taxonomy>
-                          <id provider="uniprot">1224</id>
-                          <scientific_name>Proteobacteria</scientific_name>
-                          <rank>phylum</rank>
-                        </taxonomy>
-                        <clade>
-                          <name>b_75</name>
-                          <taxonomy>
-                            <id provider="uniprot">712</id>
-                            <scientific_name>Pasteurellaceae</scientific_name>
-                            <rank>family</rank>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">727</id>
-                              <code>HAEIN</code>
-                              <scientific_name>Haemophilus influenzae</scientific_name>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">747</id>
-                              <code>PASMU</code>
-                              <scientific_name>Pasteurella multocida</scientific_name>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">487</id>
-                            <code>NEIME</code>
-                            <scientific_name>Neisseria meningitidis</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">905</id>
-                          <code>ACIFE</code>
-                          <scientific_name>Acidaminococcus fermentans</scientific_name>
-                          <rank>species</rank>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <name>b_103</name>
-                    <clade>
-                      <name>b_91</name>
-                      <taxonomy>
-                        <id provider="uniprot">28221</id>
-                        <scientific_name>Deltaproteobacteria</scientific_name>
-                        <rank>class</rank>
-                      </taxonomy>
-                      <clade>
-                        <name>b_87</name>
-                        <clade>
-                          <name>b_83</name>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">84980</id>
-                              <code>DESPS</code>
-                              <scientific_name>Desulfotalea psychrophila</scientific_name>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">876</id>
-                              <code>DESDE</code>
-                              <scientific_name>Desulfovibrio desulfuricans</scientific_name>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">56780</id>
-                            <code>SYNAS</code>
-                            <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <name>b_90</name>
-                        <taxonomy>
-                          <id provider="uniprot">28231</id>
-                          <scientific_name>Geobacter</scientific_name>
-                          <rank>genus</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">28232</id>
-                            <code>GEOME</code>
-                            <scientific_name>Geobacter metallireducens</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">35554</id>
-                            <code>GEOSL</code>
-                            <scientific_name>Geobacter sulfurreducens</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <name>b_102</name>
-                      <clade>
-                        <name>b_98</name>
-                        <clade>
-                          <name>b_94</name>
-                          <taxonomy>
-                            <id provider="uniprot">31</id>
-                            <scientific_name>Myxococcaceae</scientific_name>
-                            <rank>family</rank>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">290397</id>
-                              <code>ANADE</code>
-                              <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>
-                            </taxonomy>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">34</id>
-                              <code>MYXXA</code>
-                              <scientific_name>Myxococcus xanthus</scientific_name>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <name>b_97</name>
-                          <taxonomy>
-                            <id provider="uniprot">57723</id>
-                            <scientific_name>Acidobacteria</scientific_name>
-                            <rank>phylum</rank>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">204669</id>
-                              <code>KORVE</code>
-                              <scientific_name>Koribacter versatilis (strain Ellin345)</scientific_name>
-                              <synonym>Acidobacteria bacterium Ellin345</synonym>
-                              <synonym>Candidatus Koribacter versatilis Ellin345</synonym>
-                            </taxonomy>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">332163</id>
-                              <code>SOLUS</code>
-                              <scientific_name>Solibacter usitatus</scientific_name>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">265606</id>
-                          <code>RHOBA</code>
-                          <scientific_name>Rhodopirellula baltica</scientific_name>
-                          <rank>species</rank>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                  </clade>
-                </clade>
-                <clade>
-                  <name>b_193</name>
-                  <clade>
-                    <name>b_163</name>
-                    <clade>
-                      <name>b_133</name>
-                      <clade>
-                        <name>Chloroflexi &amp; Actinobacteria</name>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">201174</id>
-                            <scientific_name>Actinobacteria</scientific_name>
-                            <rank>phylum</rank>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">2037</id>
-                              <scientific_name>Actinomycetales</scientific_name>
-                              <rank>order</rank>
-                            </taxonomy>
-                            <clade>
-                              <name>b_115</name>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">266940</id>
-                                  <code>KINRD</code>
-                                  <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">378753</id>
-                                  <code>KOCRD</code>
-                                  <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">1032480</id>
-                                  <code>MICPN</code>
-                                  <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>
-                                  <common_name>Microlunatus phosphovorus NM-1</common_name>
-                                  <rank>strain</rank>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">1902</id>
-                                  <code>STRCO</code>
-                                  <scientific_name>Streptomyces coelicolor</scientific_name>
-                                  <rank>species</rank>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">269800</id>
-                                  <code>THEFY</code>
-                                  <scientific_name>Thermobifida fusca (strain YX)</scientific_name>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">85007</id>
-                                <scientific_name>Corynebacterineae</scientific_name>
-                                <rank>suborder</rank>
-                              </taxonomy>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">1763</id>
-                                  <scientific_name>Mycobacterium</scientific_name>
-                                  <rank>genus</rank>
-                                </taxonomy>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">1769</id>
-                                    <code>MYCLE</code>
-                                    <scientific_name>Mycobacterium leprae</scientific_name>
-                                    <rank>species</rank>
-                                  </taxonomy>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">1773</id>
-                                    <code>MYCTU</code>
-                                    <scientific_name>Mycobacterium tuberculosis</scientific_name>
-                                    <rank>species</rank>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">306537</id>
-                                  <code>CORJK</code>
-                                  <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">632772</id>
-                                  <code>RHOOB</code>
-                                  <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>
-                                  <rank>strain</rank>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">266117</id>
-                              <code>RUBXD</code>
-                              <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">200795</id>
-                            <scientific_name>Chloroflexi</scientific_name>
-                            <common_name>GNS bacteria</common_name>
-                            <synonym>Thermomicrobia</synonym>
-                            <rank>phylum</rank>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">32061</id>
-                              <scientific_name>Chloroflexi (class)</scientific_name>
-                              <synonym>Chloroflecales</synonym>
-                              <synonym>Chloroflexus/Deinococcus group</synonym>
-                              <rank>class</rank>
-                            </taxonomy>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">1106</id>
-                                <scientific_name>Chloroflexaceae</scientific_name>
-                                <common_name>filamentous anoxygenic phototrophic bacteria</common_name>
-                                <rank>family</rank>
-                              </taxonomy>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">1108</id>
-                                  <code>CHLAU</code>
-                                  <scientific_name>Chloroflexus aurantiacus</scientific_name>
-                                  <rank>species</rank>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">383372</id>
-                                  <code>ROSCS</code>
-                                  <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>
-                                  <rank>species</rank>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">65</id>
-                                <code>HERAU</code>
-                                <scientific_name>Herpetosiphon aurantiacus</scientific_name>
-                                <synonym>Herpetosiphon giganteus</synonym>
-                                <rank>species</rank>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">479434</id>
-                              <code>SPHTD</code>
-                              <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>
-                              <rank>strain</rank>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <name>b_132</name>
-                        <taxonomy>
-                          <id provider="uniprot">188787</id>
-                          <scientific_name>Deinococci</scientific_name>
-                          <rank>class</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">1298</id>
-                            <scientific_name>Deinococcus</scientific_name>
-                            <rank>genus</rank>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">319795</id>
-                              <code>DEIGD</code>
-                              <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>
-                            </taxonomy>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">1299</id>
-                              <code>DEIRA</code>
-                              <scientific_name>Deinococcus radiodurans</scientific_name>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">300852</id>
-                            <code>THET8</code>
-                            <scientific_name>Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)</scientific_name>
-                            <rank>strain</rank>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <name>b_162</name>
-                      <taxonomy>
-                        <id provider="uniprot">1117</id>
-                        <scientific_name>Cyanobacteria</scientific_name>
-                        <rank>phylum</rank>
-                      </taxonomy>
-                      <clade>
-                        <name>b_154</name>
-                        <clade>
-                          <name>b_152</name>
-                          <clade>
-                            <name>b_146</name>
-                            <clade>
-                              <name>b_144</name>
-                              <clade>
-                                <name>b_142</name>
-                                <clade>
-                                  <name>b_138</name>
-                                  <taxonomy>
-                                    <id provider="uniprot">1162</id>
-                                    <scientific_name>Nostocaceae</scientific_name>
-                                    <rank>family</rank>
-                                  </taxonomy>
-                                  <clade>
-                                    <name>b_136</name>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">240292</id>
-                                        <code>ANAVT</code>
-                                        <scientific_name>Anabaena variabilis (strain ATCC 29413 / PCC 7937)</scientific_name>
-                                        <synonym>Anabaena flos-aquae (strain IUCC 1444)</synonym>
-                                        <rank>strain</rank>
-                                      </taxonomy>
-                                    </clade>
-                                    <clade>
-                                      <taxonomy>
-                                        <id provider="uniprot">28072</id>
-                                        <code>NOSS7</code>
-                                        <scientific_name>Nostoc sp. (strain ATCC 29411 / PCC 7524)</scientific_name>
-                                        <rank>species</rank>
-                                      </taxonomy>
-                                    </clade>
-                                  </clade>
-                                  <clade>
-                                    <taxonomy>
-                                      <id provider="uniprot">63737</id>
-                                      <code>NOSP7</code>
-                                      <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>
-                                      <rank>strain</rank>
-                                    </taxonomy>
-                                  </clade>
-                                </clade>
-                                <clade>
-                                  <taxonomy>
-                                    <id provider="uniprot">329726</id>
-                                    <code>ACAM1</code>
-                                    <scientific_name>Acaryochloris marina (strain MBIC 11017</scientific_name>
-                                    <rank>strain</rank>
-                                  </taxonomy>
-                                </clade>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">449447</id>
-                                  <code>MICAN</code>
-                                  <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">1206</id>
-                                <code>TRIER</code>
-                                <scientific_name>Trichodesmium erythraeum</scientific_name>
-                                <rank>species</rank>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">1118</id>
-                              <scientific_name>Chroococcales</scientific_name>
-                              <rank>order</rank>
-                            </taxonomy>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">32046</id>
-                                <code>SYNEL</code>
-                                <scientific_name>Synechococcus elongatus</scientific_name>
-                                <rank>species</rank>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">1111708</id>
-                                <code>SYNY3</code>
-                                <scientific_name>Synechocystis sp. (strain PCC 6803 / Kazusa)</scientific_name>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">33072</id>
-                            <code>GLOVI</code>
-                            <scientific_name>Gloeobacter violaceus</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <name>b_161</name>
-                        <clade>
-                          <name>b_159</name>
-                          <taxonomy>
-                            <id provider="uniprot">1218</id>
-                            <scientific_name>Prochlorococcus</scientific_name>
-                            <rank>genus</rank>
-                          </taxonomy>
-                          <clade>
-                            <name>b_157</name>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">1219</id>
-                                <code>PROMA</code>
-                                <scientific_name>Prochlorococcus marinus</scientific_name>
-                                <rank>species</rank>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">59919</id>
-                                <code>PROMP</code>
-                                <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">74547</id>
-                              <code>PROMM</code>
-                              <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">64471</id>
-                            <code>SYNS3</code>
-                            <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <name>b_192</name>
-                    <clade>
-                      <name>b_190</name>
-                      <clade>
-                        <name>b_178</name>
-                        <clade>
-                          <name>b_176</name>
-                          <taxonomy>
-                            <id provider="uniprot">191412</id>
-                            <scientific_name>Chlorobiaceae</scientific_name>
-                            <rank>family</rank>
-                          </taxonomy>
-                          <clade>
-                            <name>b_170</name>
-                            <clade>
-                              <name>b_166</name>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">331678</id>
-                                  <code>CHLPB</code>
-                                  <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">1102</id>
-                                  <code>PROAE</code>
-                                  <scientific_name>Prosthecochloris aestuarii</scientific_name>
-                                  <rank>species</rank>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <name>b_169</name>
-                              <taxonomy>
-                                <id provider="uniprot">274493</id>
-                                <scientific_name>Chlorobium/Pelodictyon group</scientific_name>
-                              </taxonomy>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">1100</id>
-                                  <code>PELLU</code>
-                                  <scientific_name>Pelodictyon luteolum</scientific_name>
-                                  <rank>species</rank>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">290318</id>
-                                  <code>PROVI</code>
-                                  <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>
-                                  <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>
-                                  <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <name>b_175</name>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">256319</id>
-                                <scientific_name>Chlorobaculum</scientific_name>
-                                <rank>genus</rank>
-                              </taxonomy>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">517417</id>
-                                  <code>CHLP8</code>
-                                  <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>
-                                  <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>
-                                </taxonomy>
-                              </clade>
-                              <clade>
-                                <taxonomy>
-                                  <id provider="uniprot">1097</id>
-                                  <code>CHLTE</code>
-                                  <scientific_name>Chlorobium tepidum</scientific_name>
-                                  <rank>species</rank>
-                                </taxonomy>
-                              </clade>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">340177</id>
-                                <code>CHLCH</code>
-                                <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">315277</id>
-                            <code>CHLTA</code>
-                            <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <name>b_189</name>
-                        <taxonomy>
-                          <id provider="uniprot">976</id>
-                          <scientific_name>Bacteroidetes</scientific_name>
-                          <rank>phylum</rank>
-                        </taxonomy>
-                        <clade>
-                          <name>b_183</name>
-                          <clade>
-                            <name>b_181</name>
-                            <taxonomy>
-                              <id provider="uniprot">49546</id>
-                              <scientific_name>Flavobacteriaceae</scientific_name>
-                              <rank>family</rank>
-                            </taxonomy>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">986</id>
-                                <code>FLAJO</code>
-                                <scientific_name>Flavobacterium johnsoniae</scientific_name>
-                                <synonym>Cytophaga johnsonae</synonym>
-                                <rank>species</rank>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">411154</id>
-                                <code>GRAFK</code>
-                                <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">269798</id>
-                              <code>CYTH3</code>
-                              <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <name>b_188</name>
-                          <taxonomy>
-                            <id provider="uniprot">171549</id>
-                            <scientific_name>Bacteroidales</scientific_name>
-                            <rank>order</rank>
-                          </taxonomy>
-                          <clade>
-                            <name>b_186</name>
-                            <taxonomy>
-                              <id provider="uniprot">816</id>
-                              <scientific_name>Bacteroides</scientific_name>
-                              <rank>genus</rank>
-                            </taxonomy>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">817</id>
-                                <code>BACFR</code>
-                                <scientific_name>Bacteroides fragilis</scientific_name>
-                                <rank>species</rank>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">818</id>
-                                <code>BACTN</code>
-                                <scientific_name>Bacteroides thetaiotaomicron</scientific_name>
-                                <rank>species</rank>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">837</id>
-                              <code>PORGI</code>
-                              <scientific_name>Porphyromonas gingivalis</scientific_name>
-                              <synonym>Bacteroides gingivalis</synonym>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">309807</id>
-                        <code>SALRD</code>
-                        <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>
-                      </taxonomy>
-                    </clade>
-                  </clade>
-                </clade>
-              </clade>
-              <clade>
-                <name>b_199</name>
-                <clade>
-                  <name>b_197</name>
-                  <taxonomy>
-                    <scientific_name>Verrucomicrobia</scientific_name>
-                  </taxonomy>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">349741</id>
-                      <code>AKKM8</code>
-                      <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>
-                    </taxonomy>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">481448</id>
-                      <code>METI4</code>
-                      <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>
-                      <synonym>Methylokorus infernorum (strain V4)</synonym>
-                    </taxonomy>
-                  </clade>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">44275</id>
-                    <code>LEPIC</code>
-                    <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>
-                  </taxonomy>
-                </clade>
-              </clade>
-            </clade>
-            <clade>
-              <name>b_225</name>
-              <clade>
-                <name>b_219</name>
-                <taxonomy>
-                  <id provider="uniprot">1239</id>
-                  <scientific_name>Firmicutes</scientific_name>
-                  <rank>phylum</rank>
-                </taxonomy>
-                <clade>
-                  <name>b_213</name>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">1385</id>
-                      <scientific_name>Bacillales</scientific_name>
-                      <rank>order</rank>
-                    </taxonomy>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">186817</id>
-                        <scientific_name>Bacillaceae</scientific_name>
-                        <rank>family</rank>
-                      </taxonomy>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">1386</id>
-                          <scientific_name>Bacillus</scientific_name>
-                          <rank>genus</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">86661</id>
-                            <scientific_name>Bacillus cereus group</scientific_name>
-                          </taxonomy>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">1392</id>
-                              <code>BACAN</code>
-                              <scientific_name>Bacillus anthracis</scientific_name>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">572264</id>
-                              <code>BACC3</code>
-                              <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>
-                              <rank>strain</rank>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">224308</id>
-                            <code>BACSU</code>
-                            <scientific_name>Bacillus subtilis (strain 168)</scientific_name>
-                            <synonym>Bacillus subtilis subsp. subtilis str. 168</synonym>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <name>b_206</name>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">86665</id>
-                            <code>BACHD</code>
-                            <scientific_name>Bacillus halodurans</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">1462</id>
-                            <code>GEOKA</code>
-                            <scientific_name>Geobacillus kaustophilus</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <name>b_210</name>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">1639</id>
-                          <code>LISMO</code>
-                          <scientific_name>Listeria monocytogenes</scientific_name>
-                          <rank>species</rank>
-                        </taxonomy>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">1280</id>
-                          <code>STAAU</code>
-                          <scientific_name>Staphylococcus aureus</scientific_name>
-                          <rank>species</rank>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">195103</id>
-                      <code>CLOP1</code>
-                      <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>
-                    </taxonomy>
-                  </clade>
-                </clade>
-                <clade>
-                  <name>Clostridia</name>
-                  <taxonomy>
-                    <id provider="uniprot">186801</id>
-                    <scientific_name>Clostridia</scientific_name>
-                    <rank>class</rank>
-                  </taxonomy>
-                  <clade>
-                    <name>b_218</name>
-                    <clade>
-                      <name>b_216</name>
-                      <taxonomy>
-                        <id provider="uniprot">186814</id>
-                        <scientific_name>Thermoanaerobacteriaceae</scientific_name>
-                        <rank>family</rank>
-                      </taxonomy>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">246194</id>
-                          <code>CARHZ</code>
-                          <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>
-                        </taxonomy>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">119072</id>
-                          <code>THETN</code>
-                          <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>
-                          <rank>species</rank>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">49338</id>
-                        <code>DESHA</code>
-                        <scientific_name>Desulfitobacterium hafniense</scientific_name>
-                        <synonym>Desulfitobacterium frappieri</synonym>
-                        <rank>species</rank>
-                      </taxonomy>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">515619</id>
-                      <code>EUBR3</code>
-                      <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>
-                    </taxonomy>
-                  </clade>
-                </clade>
-              </clade>
-              <clade>
-                <name>b_224</name>
-                <taxonomy>
-                  <id provider="uniprot">188709</id>
-                  <scientific_name>Thermotogaceae</scientific_name>
-                  <rank>family</rank>
-                </taxonomy>
-                <clade>
-                  <name>b_222</name>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">381764</id>
-                      <code>FERNB</code>
-                      <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>
-                    </taxonomy>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">416591</id>
-                      <code>THELT</code>
-                      <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>
-                    </taxonomy>
-                  </clade>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">2336</id>
-                    <code>THEMA</code>
-                    <scientific_name>Thermotoga maritima</scientific_name>
-                    <rank>species</rank>
-                  </taxonomy>
-                </clade>
-              </clade>
-            </clade>
-          </clade>
-          <clade>
-            <name>b_267</name>
-            <clade>
-              <name>b_263</name>
-              <clade>
-                <name>b_251</name>
-                <clade>
-                  <name>b_249</name>
-                  <clade>
-                    <name>b_245</name>
-                    <clade>
-                      <name>b_237</name>
-                      <clade>
-                        <name>b_233</name>
-                        <taxonomy>
-                          <id provider="uniprot">31969</id>
-                          <scientific_name>Mollicutes</scientific_name>
-                          <rank>class</rank>
-                        </taxonomy>
-                        <clade>
-                          <name>b_231</name>
-                          <clade>
-                            <name>b_229</name>
-                            <taxonomy>
-                              <scientific_name>Mycoplasma</scientific_name>
-                            </taxonomy>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">2097</id>
-                                <code>MYCGE</code>
-                                <scientific_name>Mycoplasma genitalium</scientific_name>
-                                <rank>species</rank>
-                              </taxonomy>
-                            </clade>
-                            <clade>
-                              <taxonomy>
-                                <id provider="uniprot">2104</id>
-                                <code>MYCPN</code>
-                                <scientific_name>Mycoplasma pneumoniae</scientific_name>
-                                <rank>species</rank>
-                              </taxonomy>
-                            </clade>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">2151</id>
-                              <code>MESFL</code>
-                              <scientific_name>Mesoplasma florum</scientific_name>
-                              <synonym>Acholeplasma florum</synonym>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">134821</id>
-                            <code>UREPA</code>
-                            <scientific_name>Ureaplasma parvum</scientific_name>
-                            <synonym>Ureaplasma urealyticum biotype 1</synonym>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <name>b_236</name>
-                        <taxonomy>
-                          <id provider="uniprot">137</id>
-                          <scientific_name>Spirochaetaceae</scientific_name>
-                          <rank>family</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">139</id>
-                            <code>BORBU</code>
-                            <scientific_name>Borrelia burgdorferi</scientific_name>
-                            <common_name>Lyme disease spirochete</common_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">160</id>
-                            <code>TREPA</code>
-                            <scientific_name>Treponema pallidum</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <name>b_244</name>
-                      <clade>
-                        <name>b_242</name>
-                        <taxonomy>
-                          <id provider="uniprot">1113537</id>
-                          <scientific_name>Chlamydia/Chlamydophila group</scientific_name>
-                        </taxonomy>
-                        <clade>
-                          <name>b_240</name>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">83558</id>
-                              <code>CHLPN</code>
-                              <scientific_name>Chlamydia pneumoniae</scientific_name>
-                              <synonym>Chlamydophila pneumoniae</synonym>
-                              <rank>species</rank>
-                            </taxonomy>
-                          </clade>
-                          <clade>
-                            <taxonomy>
-                              <id provider="uniprot">264202</id>
-                              <code>CHLFF</code>
-                              <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>
-                            </taxonomy>
-                          </clade>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">83560</id>
-                            <code>CHLMU</code>
-                            <scientific_name>Chlamydia muridarum</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">785</id>
-                          <code>RICTY</code>
-                          <scientific_name>Rickettsia typhi</scientific_name>
-                          <rank>species</rank>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">28211</id>
-                      <scientific_name>Alphaproteobacteria</scientific_name>
-                      <rank>class</rank>
-                    </taxonomy>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">38323</id>
-                        <code>BARHE</code>
-                        <scientific_name>Bartonella henselae</scientific_name>
-                        <synonym>Rochalimaea henselae</synonym>
-                        <rank>species</rank>
-                      </taxonomy>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">198252</id>
-                        <code>PELUB</code>
-                        <scientific_name>Pelagibacter ubique</scientific_name>
-                        <rank>species</rank>
-                      </taxonomy>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">780</id>
-                        <scientific_name>Rickettsia</scientific_name>
-                        <rank>genus</rank>
-                      </taxonomy>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">391896</id>
-                          <code>RICB8</code>
-                          <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>
-                        </taxonomy>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">452659</id>
-                          <code>RICRO</code>
-                          <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>
-                          <rank>strain</rank>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                  </clade>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">263</id>
-                    <code>FRATU</code>
-                    <scientific_name>Francisella tularensis</scientific_name>
-                    <rank>species</rank>
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-                </clade>
-              </clade>
-              <clade>
-                <name>b_262</name>
-                <clade>
-                  <name>b_260</name>
-                  <clade>
-                    <name>b_258</name>
-                    <taxonomy>
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-                      <rank>order</rank>
-                    </taxonomy>
-                    <clade>
-                      <name>b_256</name>
-                      <taxonomy>
-                        <id provider="uniprot">1300</id>
-                        <scientific_name>Streptococcaceae</scientific_name>
-                        <rank>family</rank>
-                      </taxonomy>
-                      <clade>
-                        <name>b_254</name>
-                        <taxonomy>
-                          <id provider="uniprot">1301</id>
-                          <scientific_name>Streptococcus</scientific_name>
-                          <rank>genus</rank>
-                        </taxonomy>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">1313</id>
-                            <code>STRPN</code>
-                            <scientific_name>Streptococcus pneumoniae</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                        <clade>
-                          <taxonomy>
-                            <id provider="uniprot">1314</id>
-                            <code>STRPY</code>
-                            <scientific_name>Streptococcus pyogenes</scientific_name>
-                            <rank>species</rank>
-                          </taxonomy>
-                        </clade>
-                      </clade>
-                      <clade>
-                        <taxonomy>
-                          <id provider="uniprot">1360</id>
-                          <code>LACLA</code>
-                          <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>
-                          <synonym>Streptococcus lactis</synonym>
-                          <rank>subspecies</rank>
-                        </taxonomy>
-                      </clade>
-                    </clade>
-                    <clade>
-                      <taxonomy>
-                        <id provider="uniprot">1579</id>
-                        <code>LACAC</code>
-                        <scientific_name>Lactobacillus acidophilus</scientific_name>
-                        <rank>species</rank>
-                      </taxonomy>
-                    </clade>
-                  </clade>
-                  <clade>
-                    <taxonomy>
-                      <id provider="uniprot">216816</id>
-                      <code>BIFLO</code>
-                      <scientific_name>Bifidobacterium longum</scientific_name>
-                      <rank>species</rank>
-                    </taxonomy>
-                  </clade>
-                </clade>
-                <clade>
-                  <taxonomy>
-                    <id provider="uniprot">851</id>
-                    <code>FUSNU</code>
-                    <scientific_name>Fusobacterium nucleatum</scientific_name>
-                    <rank>species</rank>
-                  </taxonomy>
-                </clade>
-              </clade>
-            </clade>
-            <clade>
-              <name>b_266</name>
-              <taxonomy>
-                <id provider="uniprot">61434</id>
-                <scientific_name>Dehalococcoides</scientific_name>
-                <rank>genus</rank>
-              </taxonomy>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">243164</id>
-                  <code>DEHE1</code>
-                  <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>
-                </taxonomy>
-              </clade>
-              <clade>
-                <taxonomy>
-                  <id provider="uniprot">216389</id>
-                  <code>DEHSB</code>
-                  <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>
-                  <rank>species</rank>
-                </taxonomy>
-              </clade>
-            </clade>
-          </clade>
-        </clade>
-        <clade>
-          <name>b_277</name>
-          <taxonomy>
-            <id provider="uniprot">29547</id>
-            <scientific_name>Epsilonproteobacteria</scientific_name>
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-          </taxonomy>
-          <clade>
-            <name>b_273</name>
-            <clade>
-              <taxonomy>
-                <id provider="uniprot">387092</id>
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-            </clade>
-            <clade>
-              <taxonomy>
-                <id provider="uniprot">387093</id>
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-          <clade>
-            <name>b_276</name>
-            <taxonomy>
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-            <clade>
-              <taxonomy>
-                <id provider="uniprot">357544</id>
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-      </clade>
-      <clade>
-        <taxonomy>
-          <id provider="uniprot">224324</id>
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-          <scientific_name>Aquifex aeolicus (strain VF5)</scientific_name>
-          <rank>strain</rank>
-        </taxonomy>
-      </clade>
-    </clade>
-  </clade>
-</phylogeny>
-</phyloxml>
\ No newline at end of file
diff --git a/samples/tree.newick b/samples/tree.newick
deleted file mode 100755
index 39c421e..0000000
--- a/samples/tree.newick
+++ /dev/null
@@ -1 +0,0 @@
-((raccoon:19.19959,bear:6.80041):0.84600,((sea_lion:11.99700, seal:12.00300):7.52973,((monkey:100.85930,cat:47.14069):20.59201, weasel:18.87953):2.09460):3.87382,dog:25.46154);
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diff --git a/submissions/91162629d258a876ee994e9233b2ad87 b/submissions/91162629d258a876ee994e9233b2ad87
deleted file mode 100644
index 16e703c..0000000
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+++ /dev/null
@@ -1,7791 +0,0 @@
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-               <value>33</value>
-               <value>73</value>
-            </values>
-            <values for="26">
-               <value>82</value>
-               <value>57</value>
-               <value>23</value>
-            </values>
-            <values for="27">
-               <value>2</value>
-               <value>69</value>
-               <value>29</value>
-            </values>
-            <values for="28">
-               <value>8</value>
-               <value>48</value>
-               <value>11</value>
-            </values>
-            <values for="31">
-               <value>34</value>
-               <value>82</value>
-               <value>87</value>
-            </values>
-            <values for="32">
-               <value>77</value>
-               <value>99</value>
-               <value>58</value>
-            </values>
-            <values for="36">
-               <value>60</value>
-               <value>6</value>
-               <value>84</value>
-            </values>
-            <values for="37">
-               <value>71</value>
-               <value>39</value>
-               <value>8</value>
-            </values>
-            <values for="38">
-               <value>5</value>
-               <value>79</value>
-               <value>53</value>
-            </values>
-            <values for="39">
-               <value>12</value>
-               <value>55</value>
-               <value>86</value>
-            </values>
-            <values for="45">
-               <value>20</value>
-               <value>46</value>
-               <value>14</value>
-            </values>
-            <values for="46">
-               <value>75</value>
-               <value>73</value>
-               <value>50</value>
-            </values>
-            <values for="47">
-               <value>85</value>
-               <value>59</value>
-               <value>81</value>
-            </values>
-            <values for="50">
-               <value>9</value>
-               <value>16</value>
-               <value>80</value>
-            </values>
-            <values for="51">
-               <value>97</value>
-               <value>85</value>
-               <value>40</value>
-            </values>
-            <values for="52">
-               <value>23</value>
-               <value>15</value>
-               <value>45</value>
-            </values>
-            <values for="54">
-               <value>84</value>
-               <value>83</value>
-               <value>42</value>
-            </values>
-            <values for="55">
-               <value>27</value>
-               <value>57</value>
-               <value>32</value>
-            </values>
-            <values for="58">
-               <value>29</value>
-               <value>71</value>
-               <value>48</value>
-            </values>
-            <values for="59">
-               <value>86</value>
-               <value>43</value>
-               <value>24</value>
-            </values>
-            <values for="61">
-               <value>27</value>
-               <value>7</value>
-               <value>55</value>
-            </values>
-            <values for="62">
-               <value>61</value>
-               <value>90</value>
-               <value>98</value>
-            </values>
-            <values for="67">
-               <value>3</value>
-               <value>88</value>
-               <value>27</value>
-            </values>
-            <values for="68">
-               <value>8</value>
-               <value>30</value>
-               <value>36</value>
-            </values>
-            <values for="70">
-               <value>76</value>
-               <value>0</value>
-               <value>80</value>
-            </values>
-            <values for="71">
-               <value>51</value>
-               <value>11</value>
-               <value>19</value>
-            </values>
-            <values for="72">
-               <value>35</value>
-               <value>23</value>
-               <value>85</value>
-            </values>
-            <values for="77">
-               <value>5</value>
-               <value>38</value>
-               <value>88</value>
-            </values>
-            <values for="78">
-               <value>5</value>
-               <value>18</value>
-               <value>88</value>
-            </values>
-            <values for="79">
-               <value>85</value>
-               <value>28</value>
-               <value>56</value>
-            </values>
-            <values for="83">
-               <value>64</value>
-               <value>83</value>
-               <value>72</value>
-            </values>
-            <values for="84">
-               <value>78</value>
-               <value>66</value>
-               <value>59</value>
-            </values>
-            <values for="85">
-               <value>12</value>
-               <value>84</value>
-               <value>22</value>
-            </values>
-            <values for="89">
-               <value>47</value>
-               <value>14</value>
-               <value>91</value>
-            </values>
-            <values for="90">
-               <value>67</value>
-               <value>45</value>
-               <value>63</value>
-            </values>
-            <values for="94">
-               <value>15</value>
-               <value>70</value>
-               <value>74</value>
-            </values>
-            <values for="95">
-               <value>18</value>
-               <value>67</value>
-               <value>57</value>
-            </values>
-            <values for="96">
-               <value>64</value>
-               <value>90</value>
-               <value>0</value>
-            </values>
-            <values for="97">
-               <value>69</value>
-               <value>49</value>
-               <value>77</value>
-            </values>
-            <values for="102">
-               <value>14</value>
-               <value>29</value>
-               <value>53</value>
-            </values>
-            <values for="103">
-               <value>86</value>
-               <value>85</value>
-               <value>48</value>
-            </values>
-            <values for="104">
-               <value>61</value>
-               <value>59</value>
-               <value>85</value>
-            </values>
-            <values for="105">
-               <value>90</value>
-               <value>16</value>
-               <value>37</value>
-            </values>
-            <values for="106">
-               <value>8</value>
-               <value>2</value>
-               <value>24</value>
-            </values>
-            <values for="110">
-               <value>13</value>
-               <value>96</value>
-               <value>98</value>
-            </values>
-            <values for="111">
-               <value>14</value>
-               <value>11</value>
-               <value>6</value>
-            </values>
-            <values for="112">
-               <value>38</value>
-               <value>64</value>
-               <value>19</value>
-            </values>
-            <values for="119">
-               <value>76</value>
-               <value>67</value>
-               <value>10</value>
-            </values>
-            <values for="120">
-               <value>65</value>
-               <value>41</value>
-               <value>47</value>
-            </values>
-            <values for="121">
-               <value>93</value>
-               <value>70</value>
-               <value>42</value>
-            </values>
-            <values for="122">
-               <value>66</value>
-               <value>55</value>
-               <value>68</value>
-            </values>
-            <values for="123">
-               <value>2</value>
-               <value>78</value>
-               <value>3</value>
-            </values>
-            <values for="124">
-               <value>78</value>
-               <value>20</value>
-               <value>75</value>
-            </values>
-            <values for="126">
-               <value>24</value>
-               <value>23</value>
-               <value>55</value>
-            </values>
-            <values for="127">
-               <value>94</value>
-               <value>44</value>
-               <value>17</value>
-            </values>
-            <values for="128">
-               <value>84</value>
-               <value>88</value>
-               <value>56</value>
-            </values>
-            <values for="132">
-               <value>36</value>
-               <value>86</value>
-               <value>38</value>
-            </values>
-            <values for="133">
-               <value>82</value>
-               <value>70</value>
-               <value>14</value>
-            </values>
-            <values for="136">
-               <value>82</value>
-               <value>70</value>
-               <value>73</value>
-            </values>
-            <values for="137">
-               <value>79</value>
-               <value>97</value>
-               <value>79</value>
-            </values>
-            <values for="140">
-               <value>57</value>
-               <value>39</value>
-               <value>37</value>
-            </values>
-            <values for="141">
-               <value>86</value>
-               <value>73</value>
-               <value>62</value>
-            </values>
-            <values for="147">
-               <value>40</value>
-               <value>28</value>
-               <value>87</value>
-            </values>
-            <values for="148">
-               <value>65</value>
-               <value>58</value>
-               <value>5</value>
-            </values>
-            <values for="151">
-               <value>71</value>
-               <value>45</value>
-               <value>30</value>
-            </values>
-            <values for="152">
-               <value>67</value>
-               <value>32</value>
-               <value>70</value>
-            </values>
-            <values for="154">
-               <value>80</value>
-               <value>10</value>
-               <value>76</value>
-            </values>
-            <values for="155">
-               <value>67</value>
-               <value>81</value>
-               <value>28</value>
-            </values>
-            <values for="161">
-               <value>59</value>
-               <value>80</value>
-               <value>89</value>
-            </values>
-            <values for="162">
-               <value>48</value>
-               <value>58</value>
-               <value>41</value>
-            </values>
-            <values for="163">
-               <value>80</value>
-               <value>97</value>
-               <value>80</value>
-            </values>
-            <values for="164">
-               <value>84</value>
-               <value>4</value>
-               <value>63</value>
-            </values>
-            <values for="166">
-               <value>84</value>
-               <value>88</value>
-               <value>47</value>
-            </values>
-            <values for="167">
-               <value>14</value>
-               <value>30</value>
-               <value>66</value>
-            </values>
-            <values for="168">
-               <value>85</value>
-               <value>24</value>
-               <value>33</value>
-            </values>
-            <values for="174">
-               <value>2</value>
-               <value>8</value>
-               <value>14</value>
-            </values>
-            <values for="175">
-               <value>86</value>
-               <value>40</value>
-               <value>64</value>
-            </values>
-            <values for="176">
-               <value>68</value>
-               <value>73</value>
-               <value>60</value>
-            </values>
-            <values for="177">
-               <value>24</value>
-               <value>85</value>
-               <value>98</value>
-            </values>
-            <values for="179">
-               <value>1</value>
-               <value>49</value>
-               <value>12</value>
-            </values>
-            <values for="180">
-               <value>47</value>
-               <value>41</value>
-               <value>83</value>
-            </values>
-            <values for="184">
-               <value>36</value>
-               <value>57</value>
-               <value>61</value>
-            </values>
-            <values for="185">
-               <value>3</value>
-               <value>11</value>
-               <value>94</value>
-            </values>
-            <values for="189">
-               <value>31</value>
-               <value>71</value>
-               <value>99</value>
-            </values>
-            <values for="190">
-               <value>75</value>
-               <value>58</value>
-               <value>26</value>
-            </values>
-            <values for="191">
-               <value>41</value>
-               <value>92</value>
-               <value>33</value>
-            </values>
-            <values for="192">
-               <value>66</value>
-               <value>51</value>
-               <value>22</value>
-            </values>
-            <values for="193">
-               <value>66</value>
-               <value>18</value>
-               <value>36</value>
-            </values>
-            <values for="194">
-               <value>57</value>
-               <value>77</value>
-               <value>26</value>
-            </values>
-            <values for="196">
-               <value>60</value>
-               <value>75</value>
-               <value>90</value>
-            </values>
-            <values for="197">
-               <value>6</value>
-               <value>21</value>
-               <value>30</value>
-            </values>
-            <values for="202">
-               <value>31</value>
-               <value>7</value>
-               <value>47</value>
-            </values>
-            <values for="203">
-               <value>5</value>
-               <value>7</value>
-               <value>44</value>
-            </values>
-            <values for="209">
-               <value>44</value>
-               <value>63</value>
-               <value>42</value>
-            </values>
-            <values for="210">
-               <value>84</value>
-               <value>96</value>
-               <value>17</value>
-            </values>
-            <values for="213">
-               <value>5</value>
-               <value>0</value>
-               <value>5</value>
-            </values>
-            <values for="214">
-               <value>62</value>
-               <value>10</value>
-               <value>72</value>
-            </values>
-            <values for="216">
-               <value>45</value>
-               <value>80</value>
-               <value>51</value>
-            </values>
-            <values for="217">
-               <value>53</value>
-               <value>68</value>
-               <value>17</value>
-            </values>
-            <values for="223">
-               <value>87</value>
-               <value>16</value>
-               <value>94</value>
-            </values>
-            <values for="224">
-               <value>98</value>
-               <value>27</value>
-               <value>83</value>
-            </values>
-            <values for="225">
-               <value>23</value>
-               <value>82</value>
-               <value>21</value>
-            </values>
-            <values for="226">
-               <value>88</value>
-               <value>85</value>
-               <value>79</value>
-            </values>
-            <values for="231">
-               <value>80</value>
-               <value>31</value>
-               <value>68</value>
-            </values>
-            <values for="232">
-               <value>11</value>
-               <value>72</value>
-               <value>53</value>
-            </values>
-            <values for="235">
-               <value>66</value>
-               <value>44</value>
-               <value>56</value>
-            </values>
-            <values for="236">
-               <value>45</value>
-               <value>23</value>
-               <value>67</value>
-            </values>
-            <values for="237">
-               <value>28</value>
-               <value>25</value>
-               <value>19</value>
-            </values>
-            <values for="238">
-               <value>89</value>
-               <value>3</value>
-               <value>30</value>
-            </values>
-            <values for="239">
-               <value>30</value>
-               <value>47</value>
-               <value>4</value>
-            </values>
-            <values for="243">
-               <value>32</value>
-               <value>49</value>
-               <value>42</value>
-            </values>
-            <values for="244">
-               <value>32</value>
-               <value>71</value>
-               <value>74</value>
-            </values>
-            <values for="247">
-               <value>44</value>
-               <value>70</value>
-               <value>25</value>
-            </values>
-            <values for="248">
-               <value>33</value>
-               <value>16</value>
-               <value>63</value>
-            </values>
-            <values for="249">
-               <value>68</value>
-               <value>77</value>
-               <value>73</value>
-            </values>
-            <values for="253">
-               <value>62</value>
-               <value>22</value>
-               <value>51</value>
-            </values>
-            <values for="254">
-               <value>8</value>
-               <value>2</value>
-               <value>47</value>
-            </values>
-            <values for="255">
-               <value>11</value>
-               <value>14</value>
-               <value>89</value>
-            </values>
-            <values for="257">
-               <value>13</value>
-               <value>84</value>
-               <value>75</value>
-            </values>
-            <values for="258">
-               <value>38</value>
-               <value>34</value>
-               <value>82</value>
-            </values>
-            <values for="264">
-               <value>19</value>
-               <value>70</value>
-               <value>53</value>
-            </values>
-            <values for="265">
-               <value>48</value>
-               <value>59</value>
-               <value>49</value>
-            </values>
-            <values for="266">
-               <value>36</value>
-               <value>28</value>
-               <value>77</value>
-            </values>
-            <values for="267">
-               <value>66</value>
-               <value>72</value>
-               <value>84</value>
-            </values>
-            <values for="271">
-               <value>47</value>
-               <value>43</value>
-               <value>41</value>
-            </values>
-            <values for="272">
-               <value>38</value>
-               <value>19</value>
-               <value>41</value>
-            </values>
-            <values for="273">
-               <value>57</value>
-               <value>1</value>
-               <value>86</value>
-            </values>
-            <values for="276">
-               <value>50</value>
-               <value>76</value>
-               <value>64</value>
-            </values>
-            <values for="277">
-               <value>93</value>
-               <value>31</value>
-               <value>90</value>
-            </values>
-            <values for="278">
-               <value>41</value>
-               <value>25</value>
-               <value>61</value>
-            </values>
-            <values for="281">
-               <value>51</value>
-               <value>74</value>
-               <value>2</value>
-            </values>
-            <values for="282">
-               <value>58</value>
-               <value>22</value>
-               <value>8</value>
-            </values>
-            <values for="284">
-               <value>62</value>
-               <value>25</value>
-               <value>99</value>
-            </values>
-            <values for="285">
-               <value>39</value>
-               <value>77</value>
-               <value>60</value>
-            </values>
-            <values for="288">
-               <value>25</value>
-               <value>71</value>
-               <value>35</value>
-            </values>
-            <values for="289">
-               <value>19</value>
-               <value>92</value>
-               <value>45</value>
-            </values>
-            <values for="290">
-               <value>97</value>
-               <value>77</value>
-               <value>95</value>
-            </values>
-            <values for="295">
-               <value>33</value>
-               <value>86</value>
-               <value>60</value>
-            </values>
-            <values for="296">
-               <value>5</value>
-               <value>70</value>
-               <value>25</value>
-            </values>
-            <values for="297">
-               <value>94</value>
-               <value>46</value>
-               <value>72</value>
-            </values>
-            <values for="301">
-               <value>49</value>
-               <value>45</value>
-               <value>61</value>
-            </values>
-            <values for="302">
-               <value>2</value>
-               <value>99</value>
-               <value>94</value>
-            </values>
-            <values for="303">
-               <value>28</value>
-               <value>6</value>
-               <value>39</value>
-            </values>
-            <values for="304">
-               <value>87</value>
-               <value>51</value>
-               <value>36</value>
-            </values>
-            <values for="310">
-               <value>77</value>
-               <value>63</value>
-               <value>86</value>
-            </values>
-            <values for="311">
-               <value>76</value>
-               <value>26</value>
-               <value>48</value>
-            </values>
-            <values for="312">
-               <value>85</value>
-               <value>0</value>
-               <value>64</value>
-            </values>
-            <values for="315">
-               <value>78</value>
-               <value>98</value>
-               <value>90</value>
-            </values>
-            <values for="316">
-               <value>44</value>
-               <value>14</value>
-               <value>13</value>
-            </values>
-            <values for="317">
-               <value>59</value>
-               <value>40</value>
-               <value>90</value>
-            </values>
-            <values for="320">
-               <value>25</value>
-               <value>79</value>
-               <value>79</value>
-            </values>
-            <values for="321">
-               <value>74</value>
-               <value>62</value>
-               <value>72</value>
-            </values>
-            <values for="324">
-               <value>5</value>
-               <value>63</value>
-               <value>60</value>
-            </values>
-            <values for="325">
-               <value>12</value>
-               <value>9</value>
-               <value>80</value>
-            </values>
-            <values for="326">
-               <value>46</value>
-               <value>89</value>
-               <value>52</value>
-            </values>
-            <values for="329">
-               <value>50</value>
-               <value>44</value>
-               <value>4</value>
-            </values>
-            <values for="330">
-               <value>89</value>
-               <value>92</value>
-               <value>40</value>
-            </values>
-            <values for="331">
-               <value>44</value>
-               <value>30</value>
-               <value>11</value>
-            </values>
-            <values for="332">
-               <value>41</value>
-               <value>37</value>
-               <value>22</value>
-            </values>
-         </data>
-      </graph>
-      <graph type="heatmap">
-         <name>Heatmap test graph with fields</name>
-         <legend show="1">
-            <field>
-               <name>heat1</name>
-            </field>
-            <field>
-               <name>heat2</name>
-            </field>
-            <field>
-               <name>heat3</name>
-            </field>
-            <field>
-               <name>heat4</name>
-            </field>
-            <field>
-               <name>heat5</name>
-            </field>
-            <field>
-               <name>heat6</name>
-            </field>
-            <field>
-               <name>heat7</name>
-            </field>
-            <field>
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-         <description>Pyruvate dehydrogenase</description>
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-      <color>
-         <code>IPR002048</code>
-         <value>0xFAF38C</value>
-      </color>
-      <color>
-         <code>IPR001005</code>
-         <value>0xF9D380</value>
-      </color>
-      <color>
-         <code>IPR004910</code>
-         <value>0xA9BFAB</value>
-      </color>
-      <color>
-         <code>IPR017884</code>
-         <value>0xAF45C9</value>
-      </color>
-      <color>
-         <code>IPR009057</code>
-         <value>0x2819CC</value>
-      </color>
-   </domains>
-</phyloxml>
diff --git a/submissions/domains.xml b/submissions/domains.xml
new file mode 100644
index 0000000..e0b4298
--- /dev/null
+++ b/submissions/domains.xml
@@ -0,0 +1,2505 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<phyloxml xmlns="http://www.phyloxml.org" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.00/phyloxml.xsd">
+<phylogeny rooted="true">
+  <clade>
+    <confidence type="bootstrap">100.0</confidence>
+    <clade>
+      <branch_length>0.8758800000000001</branch_length>
+      <confidence type="bootstrap">100.0</confidence>
+      <clade>
+        <branch_length>0.17287</branch_length>
+        <confidence type="bootstrap">100.0</confidence>
+        <clade>
+          <branch_length>0.03877</branch_length>
+          <confidence type="bootstrap">97.0</confidence>
+          <clade>
+            <branch_length>0.12225</branch_length>
+            <confidence type="bootstrap">100.0</confidence>
+            <clade>
+              <name>PP00079G00800</name>
+              <branch_length>0.03258</branch_length>
+            <taxonomy>
+                  <code>ppa</code>
+                </taxonomy>
+                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PP00079G00800</property>
+                <sequence>
+                  <domain_architecture length="2214">
+                    <domain confidence="2.62E-38" from="1702" to="1860">IPR009051</domain>
+                    <domain confidence="8.2E-106" from="1393" to="1660">IPR002489</domain>
+                    <domain confidence="9.3E-103" from="608" to="938">IPR013785</domain>
+                    <domain confidence="2.9E-64" from="1415" to="1606">IPR002489</domain>
+                    <domain confidence="2.1E-226" from="1705" to="2190">IPR006005</domain>
+                    <domain confidence="7.2E-118" from="612" to="896">IPR006982</domain>
+                    <domain confidence="5.62E-99" from="1386" to="1651">IPR002489</domain>
+                    <domain confidence="1.2E-179" from="964" to="1374">IPR013785</domain>
+                    <domain confidence="24.271" from="135" to="540">IPR017932</domain>
+                    <domain confidence="2.4E-41" from="1853" to="1942">IPR016040</domain>
+                    <domain confidence="2.4E-41" from="2125" to="2198">IPR016040</domain>
+                    <domain confidence="9.8E-6" from="1851" to="1923">IPR001327</domain>
+                    <domain confidence="1.6E-159" from="962" to="1334">IPR002932</domain>
+                    <domain confidence="6.6E-20" from="1851" to="2165">IPR023753</domain>
+                    <domain confidence="1.8E-22" from="1738" to="1838">IPR028261</domain>
+                    <domain confidence="2.6E-142" from="135" to="512">IPR000583</domain>
+                  </domain_architecture>
+                </sequence>
+              </clade>
+            <clade>
+              <name>PP00058G00660</name>
+              <branch_length>0.03389</branch_length>
+            <taxonomy>
+                  <code>ppa</code>
+                </taxonomy>
+                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PP00058G00660</property>
+                <sequence>
+                  <domain_architecture length="2211">
+                    <domain confidence="3.6E-158" from="961" to="1332">IPR002932</domain>
+                    <domain confidence="6.7E-42" from="2120" to="2198">IPR016040</domain>
+                    <domain confidence="2.3E-21" from="1736" to="1835">IPR028261</domain>
+                    <domain confidence="1.5E-20" from="1848" to="2162">IPR023753</domain>
+                    <domain confidence="5.1E-224" from="1702" to="2187">IPR006005</domain>
+                    <domain confidence="1.0E-63" from="1414" to="1605">IPR002489</domain>
+                    <domain confidence="7.85E-38" from="1701" to="1857">IPR009051</domain>
+                    <domain confidence="6.7E-6" from="1848" to="1920">IPR001327</domain>
+                    <domain confidence="6.7E-42" from="1850" to="1939">IPR016040</domain>
+                    <domain confidence="1.0E-179" from="960" to="1373">IPR013785</domain>
+                    <domain confidence="5.8E-117" from="611" to="895">IPR006982</domain>
+                    <domain confidence="24.232" from="134" to="539">IPR017932</domain>
+                    <domain confidence="3.5E-140" from="134" to="511">IPR000583</domain>
+                    <domain confidence="4.1E-104" from="1392" to="1660">IPR002489</domain>
+                    <domain confidence="1.96E-96" from="1385" to="1650">IPR002489</domain>
+                    <domain confidence="1.5E-101" from="603" to="937">IPR013785</domain>
+                  </domain_architecture>
+                </sequence>
+              </clade>
+          </clade>
+          <clade>
+            <branch_length>0.10527</branch_length>
+            <confidence type="bootstrap">100.0</confidence>
+            <clade>
+              <name>PP00081G01010</name>
+              <branch_length>0.10202</branch_length>
+            <taxonomy>
+                  <code>ppa</code>
+                </taxonomy>
+                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PP00081G01010</property>
+                <sequence>
+                  <domain_architecture length="2215">
+                    <domain confidence="22.72" from="106" to="511">IPR017932</domain>
+                    <domain confidence="1.1E-209" from="1685" to="2183">IPR006005</domain>
+                    <domain confidence="2.4E-38" from="2113" to="2195">IPR016040</domain>
+                    <domain confidence="3.9E-104" from="1367" to="1637">IPR002489</domain>
+                    <domain confidence="2.4E-38" from="1832" to="1922">IPR016040</domain>
+                    <domain confidence="1.26E-38" from="1682" to="1839">IPR009051</domain>
+                    <domain confidence="6.9E-22" from="1711" to="1816">IPR028261</domain>
+                    <domain confidence="5.0E-112" from="584" to="872">IPR006982</domain>
+                    <domain confidence="4.32E-98" from="1362" to="1624">IPR002489</domain>
+                    <domain confidence="1.5E-64" from="1391" to="1577">IPR002489</domain>
+                    <domain confidence="2.7E-139" from="106" to="483">IPR000583</domain>
+                    <domain confidence="3.8E-99" from="577" to="914">IPR013785</domain>
+                    <domain confidence="5.2E-19" from="1830" to="2157">IPR023753</domain>
+                    <domain confidence="1.4E-158" from="937" to="1309">IPR002932</domain>
+                    <domain confidence="3.3E-177" from="986" to="1352">IPR013785</domain>
+                  </domain_architecture>
+                </sequence>
+              </clade>
+            <clade>
+              <name>PP00093G00670</name>
+              <branch_length>0.05662</branch_length>
+            <taxonomy>
+                  <code>ppa</code>
+                </taxonomy>
+                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PP00093G00670</property>
+                <sequence>
+                  <domain_architecture length="2252">
+                    <domain confidence="3.6E-157" from="937" to="1310">IPR002932</domain>
+                    <domain confidence="4.9E-21" from="1835" to="2149">IPR023753</domain>
+                    <domain confidence="9.6E-140" from="106" to="483">IPR000583</domain>
+                    <domain confidence="1.2E-106" from="1367" to="1637">IPR002489</domain>
+                    <domain confidence="2.82E-40" from="1688" to="1844">IPR009051</domain>
+                    <domain confidence="9.29E-99" from="1362" to="1626">IPR002489</domain>
+                    <domain confidence="1.6E-40" from="1837" to="1926">IPR016040</domain>
+                    <domain confidence="22.507" from="106" to="511">IPR017932</domain>
+                    <domain confidence="1.1E-225" from="1689" to="2174">IPR006005</domain>
+                    <domain confidence="1.2E-4" from="1835" to="1907">IPR001327</domain>
+                    <domain confidence="1.6E-40" from="2107" to="2186">IPR016040</domain>
+                    <domain confidence="3.0E-102" from="573" to="911">IPR013785</domain>
+                    <domain confidence="5.7E-177" from="986" to="1350">IPR013785</domain>
+                    <domain confidence="1.4E-114" from="584" to="872">IPR006982</domain>
+                    <domain confidence="1.7E-66" from="1391" to="1581">IPR002489</domain>
+                    <domain confidence="1.4E-22" from="1712" to="1821">IPR028261</domain>
+                  </domain_architecture>
+                </sequence>
+              </clade>
+          </clade>
+        </clade>
+        <clade>
+          <branch_length>0.08021</branch_length>
+          <confidence type="bootstrap">56.0</confidence>
+          <clade>
+            <branch_length>0.08656</branch_length>
+            <confidence type="bootstrap">100.0</confidence>
+            <clade>
+              <branch_length>0.04406</branch_length>
+              <confidence type="bootstrap">100.0</confidence>
+              <clade>
+                <branch_length>0.03065</branch_length>
+                <confidence type="bootstrap">100.0</confidence>
+                <clade>
+                  <name>ZM08G25710</name>
+                  <branch_length>0.01433</branch_length>
+                <taxonomy>
+                      <code>zma</code>
+                    </taxonomy>
+                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ZM08G25710</property>
+                    <sequence>
+                      <domain_architecture length="2174">
+                        <domain confidence="2.7E-159" from="936" to="1305">IPR002932</domain>
+                        <domain confidence="2.22E-98" from="1356" to="1622">IPR002489</domain>
+                        <domain confidence="1.8E-17" from="1814" to="2127">IPR023753</domain>
+                        <domain confidence="2.2E-116" from="580" to="869">IPR006982</domain>
+                        <domain confidence="1.5E-222" from="1666" to="2149">IPR006005</domain>
+                        <domain confidence="6.8E-65" from="1386" to="1573">IPR002489</domain>
+                        <domain confidence="1.2E-102" from="565" to="916">IPR013785</domain>
+                        <domain confidence="23.573" from="106" to="510">IPR017932</domain>
+                        <domain confidence="4.8E-107" from="1363" to="1629">IPR002489</domain>
+                        <domain confidence="1.15E-34" from="1665" to="1823">IPR009051</domain>
+                        <domain confidence="1.4E-21" from="1688" to="1800">IPR028261</domain>
+                        <domain confidence="5.2E-180" from="971" to="1345">IPR013785</domain>
+                        <domain confidence="5.7E-144" from="106" to="482">IPR000583</domain>
+                      </domain_architecture>
+                    </sequence>
+                  </clade>
+                <clade>
+                  <name>ZM03G34700</name>
+                  <branch_length>0.01261</branch_length>
+                <taxonomy>
+                      <code>zma</code>
+                    </taxonomy>
+                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ZM03G34700</property>
+                    <sequence>
+                      <domain_architecture length="2188">
+                        <domain confidence="1.4E-107" from="1363" to="1632">IPR002489</domain>
+                        <domain confidence="1.4E-221" from="1678" to="2161">IPR006005</domain>
+                        <domain confidence="5.1E-99" from="1356" to="1622">IPR002489</domain>
+                        <domain confidence="1.2E-144" from="106" to="482">IPR000583</domain>
+                        <domain confidence="1.5E-180" from="971" to="1345">IPR013785</domain>
+                        <domain confidence="8.6E-160" from="936" to="1305">IPR002932</domain>
+                        <domain confidence="1.0E-102" from="573" to="916">IPR013785</domain>
+                        <domain confidence="7.3E-117" from="579" to="869">IPR006982</domain>
+                        <domain confidence="1.9E-65" from="1386" to="1573">IPR002489</domain>
+                        <domain confidence="3.77E-34" from="1674" to="1834">IPR009051</domain>
+                        <domain confidence="23.592" from="106" to="510">IPR017932</domain>
+                        <domain confidence="1.8E-21" from="1700" to="1812">IPR028261</domain>
+                        <domain confidence="1.3E-4" from="1826" to="1860">IPR001327</domain>
+                        <domain confidence="2.9E-16" from="1826" to="2139">IPR023753</domain>
+                      </domain_architecture>
+                    </sequence>
+                  </clade>
+              </clade>
+              <clade>
+                <name>OS01G48960</name>
+                <branch_length>0.04439</branch_length>
+              <taxonomy>
+                    <code>osa</code>
+                  </taxonomy>
+                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/OS01G48960</property>
+                  <sequence>
+                    <domain_architecture length="2168">
+                      <domain confidence="6.28E-35" from="1659" to="1817">IPR009051</domain>
+                      <domain confidence="1.7E-107" from="1357" to="1625">IPR002489</domain>
+                      <domain confidence="1.4E-64" from="1380" to="1573">IPR002489</domain>
+                      <domain confidence="23.321" from="100" to="504">IPR017932</domain>
+                      <domain confidence="8.6E-161" from="929" to="1299">IPR002932</domain>
+                      <domain confidence="4.4E-117" from="575" to="863">IPR006982</domain>
+                      <domain confidence="3.5E-21" from="1697" to="1794">IPR028261</domain>
+                      <domain confidence="4.6E-222" from="1660" to="2144">IPR006005</domain>
+                      <domain confidence="2.0E-180" from="965" to="1339">IPR013785</domain>
+                      <domain confidence="3.27E-98" from="1350" to="1616">IPR002489</domain>
+                      <domain confidence="5.8E-19" from="1808" to="2121">IPR023753</domain>
+                      <domain confidence="9.4E-145" from="100" to="476">IPR000583</domain>
+                      <domain confidence="2.9E-105" from="558" to="910">IPR013785</domain>
+                    </domain_architecture>
+                  </sequence>
+                </clade>
+            </clade>
+            <clade>
+              <branch_length>0.04534</branch_length>
+              <confidence type="bootstrap">100.0</confidence>
+              <clade>
+                <name>ZM06G30610</name>
+                <branch_length>0.12664</branch_length>
+              <taxonomy>
+                    <code>zma</code>
+                  </taxonomy>
+                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ZM06G30610</property>
+                  <sequence>
+                    <domain_architecture length="2195">
+                      <domain confidence="1.0E-214" from="1685" to="2170">IPR006005</domain>
+                      <domain confidence="1.0E-39" from="2102" to="2176">IPR016040</domain>
+                      <domain confidence="1.2E-101" from="576" to="913">IPR013785</domain>
+                      <domain confidence="1.7E-96" from="1363" to="1629">IPR002489</domain>
+                      <domain confidence="1.3E-114" from="588" to="875">IPR006982</domain>
+                      <domain confidence="1.4E-154" from="941" to="1311">IPR002932</domain>
+                      <domain confidence="7.8E-104" from="1369" to="1640">IPR002489</domain>
+                      <domain confidence="3.2E-65" from="1392" to="1580">IPR002489</domain>
+                      <domain confidence="1.6E-171" from="964" to="1352">IPR013785</domain>
+                      <domain confidence="3.2E-19" from="1834" to="2146">IPR023753</domain>
+                      <domain confidence="23.767" from="114" to="518">IPR017932</domain>
+                      <domain confidence="1.0E-39" from="1835" to="1924">IPR016040</domain>
+                      <domain confidence="3.87E-30" from="1684" to="1842">IPR009051</domain>
+                      <domain confidence="7.3E-142" from="114" to="490">IPR000583</domain>
+                      <domain confidence="4.0E-20" from="1722" to="1819">IPR028261</domain>
+                    </domain_architecture>
+                  </sequence>
+                </clade>
+              <clade>
+                <name>OS05G48200</name>
+                <branch_length>0.0757</branch_length>
+              <taxonomy>
+                    <code>osa</code>
+                  </taxonomy>
+                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/OS05G48200</property>
+                  <sequence>
+                    <domain_architecture length="2189">
+                      <domain confidence="4.3E-220" from="1678" to="2162">IPR006005</domain>
+                      <domain confidence="1.8E-156" from="935" to="1305">IPR002932</domain>
+                      <domain confidence="2.5E-66" from="1386" to="1573">IPR002489</domain>
+                      <domain confidence="1.1E-101" from="578" to="916">IPR013785</domain>
+                      <domain confidence="2.5E-40" from="1828" to="1917">IPR016040</domain>
+                      <domain confidence="1.0E-174" from="975" to="1345">IPR013785</domain>
+                      <domain confidence="3.56E-35" from="1676" to="1835">IPR009051</domain>
+                      <domain confidence="2.5E-40" from="2097" to="2170">IPR016040</domain>
+                      <domain confidence="3.4E-107" from="1363" to="1635">IPR002489</domain>
+                      <domain confidence="3.2E-17" from="1826" to="2139">IPR023753</domain>
+                      <domain confidence="2.0E-117" from="581" to="869">IPR006982</domain>
+                      <domain confidence="5.4E-142" from="107" to="483">IPR000583</domain>
+                      <domain confidence="2.62E-98" from="1357" to="1622">IPR002489</domain>
+                      <domain confidence="24.213" from="107" to="511">IPR017932</domain>
+                      <domain confidence="3.7E-21" from="1703" to="1812">IPR028261</domain>
+                      <domain confidence="4.3E-5" from="1826" to="1898">IPR001327</domain>
+                    </domain_architecture>
+                  </sequence>
+                </clade>
+            </clade>
+          </clade>
+          <clade>
+            <branch_length>0.01949</branch_length>
+            <confidence type="bootstrap">100.0</confidence>
+            <clade>
+              <branch_length>0.0217</branch_length>
+              <confidence type="bootstrap">30.0</confidence>
+              <clade>
+                <branch_length>0.00376</branch_length>
+                <confidence type="bootstrap">95.0</confidence>
+                <clade>
+                  <branch_length>0.00877</branch_length>
+                  <confidence type="bootstrap">100.0</confidence>
+                  <clade>
+                    <branch_length>0.00935</branch_length>
+                    <confidence type="bootstrap">92.0</confidence>
+                    <clade>
+                      <branch_length>0.02732</branch_length>
+                      <confidence type="bootstrap">100.0</confidence>
+                      <clade>
+                        <branch_length>0.01312</branch_length>
+                        <confidence type="bootstrap">93.0</confidence>
+                        <clade>
+                          <branch_length>0.02731</branch_length>
+                          <confidence type="bootstrap">100.0</confidence>
+                          <clade>
+                            <name>MD07G019920</name>
+                            <branch_length>0.02041</branch_length>
+                          <taxonomy>
+                                <code>mdo</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/MD07G019920</property>
+                              <sequence>
+                                <domain_architecture length="2192">
+                                  <domain confidence="6.1E-5" from="1819" to="1871">IPR001327</domain>
+                                  <domain confidence="8.6E-23" from="1695" to="1806">IPR028261</domain>
+                                  <domain confidence="7.7E-102" from="560" to="898">IPR013785</domain>
+                                  <domain confidence="3.5E-18" from="1819" to="2133">IPR023753</domain>
+                                  <domain confidence="23.069" from="91" to="499">IPR017932</domain>
+                                  <domain confidence="2.7E-68" from="1377" to="1562">IPR002489</domain>
+                                  <domain confidence="8.8E-227" from="1673" to="2158">IPR006005</domain>
+                                  <domain confidence="3.3E-41" from="1821" to="1911">IPR016040</domain>
+                                  <domain confidence="1.5E-161" from="925" to="1296">IPR002932</domain>
+                                  <domain confidence="1.4E-179" from="964" to="1332">IPR013785</domain>
+                                  <domain confidence="3.3E-41" from="2093" to="2166">IPR016040</domain>
+                                  <domain confidence="2.4E-117" from="572" to="860">IPR006982</domain>
+                                  <domain confidence="1.9E-105" from="1354" to="1623">IPR002489</domain>
+                                  <domain confidence="2.4E-143" from="91" to="471">IPR000583</domain>
+                                  <domain confidence="1.1E-37" from="1671" to="1828">IPR009051</domain>
+                                  <domain confidence="1.23E-95" from="1348" to="1611">IPR002489</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                          <clade>
+                            <name>MD01G021760</name>
+                            <branch_length>0.00982</branch_length>
+                          <taxonomy>
+                                <code>mdo</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/MD01G021760</property>
+                              <sequence>
+                                <domain_architecture length="2229">
+                                  <domain confidence="1.3E-177" from="999" to="1367">IPR013785</domain>
+                                  <domain confidence="2.0E-227" from="1707" to="2192">IPR006005</domain>
+                                  <domain confidence="6.5E-119" from="607" to="895">IPR006982</domain>
+                                  <domain confidence="6.5E-104" from="595" to="933">IPR013785</domain>
+                                  <domain confidence="9.0E-23" from="1729" to="1840">IPR028261</domain>
+                                  <domain confidence="1.7E-40" from="1855" to="1945">IPR016040</domain>
+                                  <domain confidence="2.6E-69" from="1412" to="1597">IPR002489</domain>
+                                  <domain confidence="7.85E-37" from="1705" to="1862">IPR009051</domain>
+                                  <domain confidence="5.4E-5" from="1853" to="1918">IPR001327</domain>
+                                  <domain confidence="6.0E-160" from="961" to="1331">IPR002932</domain>
+                                  <domain confidence="3.3E-18" from="1853" to="2167">IPR023753</domain>
+                                  <domain confidence="22.1" from="110" to="534">IPR017932</domain>
+                                  <domain confidence="1.7E-40" from="2127" to="2215">IPR016040</domain>
+                                  <domain confidence="1.83E-96" from="1383" to="1646">IPR002489</domain>
+                                  <domain confidence="1.3E-106" from="1389" to="1658">IPR002489</domain>
+                                  <domain confidence="5.3E-139" from="138" to="506">IPR000583</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                        </clade>
+                        <clade>
+                          <name>PPE_002G29860</name>
+                          <branch_length>0.02249</branch_length>
+                        <taxonomy>
+                              <code>ppe</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PPE_002G29860</property>
+                            <sequence>
+                              <domain_architecture length="2208">
+                                <domain confidence="4.03E-37" from="1684" to="1841">IPR009051</domain>
+                                <domain confidence="1.2E-39" from="2106" to="2177">IPR016040</domain>
+                                <domain confidence="2.0E-105" from="1364" to="1635">IPR002489</domain>
+                                <domain confidence="9.4E-180" from="974" to="1344">IPR013785</domain>
+                                <domain confidence="3.1E-225" from="1686" to="2169">IPR006005</domain>
+                                <domain confidence="23.534" from="105" to="509">IPR017932</domain>
+                                <domain confidence="5.1E-17" from="1832" to="2146">IPR023753</domain>
+                                <domain confidence="1.2E-39" from="1834" to="1924">IPR016040</domain>
+                                <domain confidence="5.0E-103" from="567" to="908">IPR013785</domain>
+                                <domain confidence="5.8E-5" from="1832" to="1903">IPR001327</domain>
+                                <domain confidence="7.1E-145" from="105" to="481">IPR000583</domain>
+                                <domain confidence="7.72E-96" from="1358" to="1621">IPR002489</domain>
+                                <domain confidence="4.7E-68" from="1387" to="1573">IPR002489</domain>
+                                <domain confidence="1.2E-22" from="1708" to="1819">IPR028261</domain>
+                                <domain confidence="3.2E-161" from="936" to="1306">IPR002932</domain>
+                                <domain confidence="3.4E-117" from="582" to="870">IPR006982</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                      </clade>
+                      <clade>
+                        <name>FV7G36200</name>
+                        <branch_length>0.03934</branch_length>
+                      <taxonomy>
+                            <code>fve</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/FV7G36200</property>
+                          <sequence>
+                            <domain_architecture length="2311">
+                              <domain confidence="3.0E-161" from="938" to="1308">IPR002932</domain>
+                              <domain confidence="5.6E-69" from="1389" to="1578">IPR002489</domain>
+                              <domain confidence="5.0E-40" from="1856" to="1946">IPR016040</domain>
+                              <domain confidence="5.0E-40" from="2124" to="2206">IPR016040</domain>
+                              <domain confidence="1.5E-103" from="570" to="910">IPR013785</domain>
+                              <domain confidence="9.3E-107" from="1366" to="1634">IPR002489</domain>
+                              <domain confidence="2.6E-118" from="584" to="872">IPR006982</domain>
+                              <domain confidence="2.46E-36" from="1706" to="1863">IPR009051</domain>
+                              <domain confidence="2.4E-225" from="1708" to="2193">IPR006005</domain>
+                              <domain confidence="23.321" from="107" to="511">IPR017932</domain>
+                              <domain confidence="9.0E-145" from="107" to="483">IPR000583</domain>
+                              <domain confidence="1.57E-98" from="1360" to="1624">IPR002489</domain>
+                              <domain confidence="3.3E-22" from="1731" to="1841">IPR028261</domain>
+                              <domain confidence="4.8E-19" from="1854" to="2168">IPR023753</domain>
+                              <domain confidence="1.3E-4" from="1854" to="1891">IPR001327</domain>
+                              <domain confidence="8.5E-180" from="957" to="1348">IPR013785</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                    </clade>
+                    <clade>
+                      <branch_length>0.00931</branch_length>
+                      <confidence type="bootstrap">89.0</confidence>
+                      <clade>
+                        <branch_length>0.05318</branch_length>
+                        <confidence type="bootstrap">100.0</confidence>
+                        <clade>
+                          <name>CL05G10060</name>
+                          <branch_length>0.00918</branch_length>
+                        <taxonomy>
+                              <code>cla</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CL05G10060</property>
+                            <sequence>
+                              <domain_architecture length="2224">
+                                <domain confidence="2.1E-161" from="945" to="1316">IPR002932</domain>
+                                <domain confidence="1.2E-118" from="592" to="880">IPR006982</domain>
+                                <domain confidence="1.6E-19" from="1846" to="2160">IPR023753</domain>
+                                <domain confidence="2.6E-5" from="1846" to="1883">IPR001327</domain>
+                                <domain confidence="1.8E-105" from="588" to="918">IPR013785</domain>
+                                <domain confidence="23.786" from="114" to="521">IPR017932</domain>
+                                <domain confidence="7.2E-181" from="983" to="1353">IPR013785</domain>
+                                <domain confidence="2.9E-108" from="1374" to="1643">IPR002489</domain>
+                                <domain confidence="1.5E-225" from="1700" to="2185">IPR006005</domain>
+                                <domain confidence="1.5E-22" from="1725" to="1833">IPR028261</domain>
+                                <domain confidence="8.63E-99" from="1367" to="1631">IPR002489</domain>
+                                <domain confidence="1.1E-143" from="114" to="493">IPR000583</domain>
+                                <domain confidence="8.37E-36" from="1698" to="1855">IPR009051</domain>
+                                <domain confidence="1.5E-67" from="1397" to="1586">IPR002489</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                        <clade>
+                          <name>CM00008G04360</name>
+                          <branch_length>0.01634</branch_length>
+                        <taxonomy>
+                              <code>cme</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CM00008G04360</property>
+                            <sequence>
+                              <domain_architecture length="2031">
+                                <domain confidence="2.0E-112" from="1" to="301">IPR000583</domain>
+                                <domain confidence="5.6E-228" from="1507" to="1992">IPR006005</domain>
+                                <domain confidence="9.5E-23" from="1529" to="1640">IPR028261</domain>
+                                <domain confidence="1.1E-107" from="1181" to="1448">IPR002489</domain>
+                                <domain confidence="2.1E-104" from="390" to="725">IPR013785</domain>
+                                <domain confidence="1.5E-160" from="752" to="1123">IPR002932</domain>
+                                <domain confidence="14.697" from="1" to="329">IPR017932</domain>
+                                <domain confidence="1.9E-5" from="1653" to="1688">IPR001327</domain>
+                                <domain confidence="5.0E-19" from="1653" to="1967">IPR023753</domain>
+                                <domain confidence="5.8E-180" from="790" to="1160">IPR013785</domain>
+                                <domain confidence="5.7E-118" from="398" to="687">IPR006982</domain>
+                                <domain confidence="9.81E-99" from="1174" to="1438">IPR002489</domain>
+                                <domain confidence="5.75E-36" from="1506" to="1662">IPR009051</domain>
+                                <domain confidence="5.3E-68" from="1204" to="1393">IPR002489</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                      </clade>
+                      <clade>
+                        <branch_length>0.04295</branch_length>
+                        <confidence type="bootstrap">100.0</confidence>
+                        <clade>
+                          <branch_length>0.04096</branch_length>
+                          <confidence type="bootstrap">100.0</confidence>
+                          <clade>
+                            <name>GM06G13280</name>
+                            <branch_length>0.01261</branch_length>
+                          <taxonomy>
+                                <code>gma</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GM06G13280</property>
+                              <sequence>
+                                <domain_architecture length="2189">
+                                  <domain confidence="1.1E-106" from="1354" to="1623">IPR002489</domain>
+                                  <domain confidence="6.3E-226" from="1679" to="2164">IPR006005</domain>
+                                  <domain confidence="1.8E-22" from="1701" to="1812">IPR028261</domain>
+                                  <domain confidence="2.8E-162" from="925" to="1296">IPR002932</domain>
+                                  <domain confidence="2.1E-39" from="1827" to="1916">IPR016040</domain>
+                                  <domain confidence="5.75E-36" from="1678" to="1833">IPR009051</domain>
+                                  <domain confidence="7.8E-68" from="1377" to="1570">IPR002489</domain>
+                                  <domain confidence="4.45E-99" from="1348" to="1611">IPR002489</domain>
+                                  <domain confidence="23.224" from="97" to="499">IPR017932</domain>
+                                  <domain confidence="1.3E-15" from="1825" to="2139">IPR023753</domain>
+                                  <domain confidence="2.1E-39" from="2097" to="2171">IPR016040</domain>
+                                  <domain confidence="9.4E-180" from="962" to="1333">IPR013785</domain>
+                                  <domain confidence="7.9E-118" from="572" to="860">IPR006982</domain>
+                                  <domain confidence="2.6E-143" from="97" to="471">IPR000583</domain>
+                                  <domain confidence="3.5E-5" from="1825" to="1859">IPR001327</domain>
+                                  <domain confidence="9.7E-104" from="569" to="908">IPR013785</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                          <clade>
+                            <name>GM04G41540</name>
+                            <branch_length>0.00785</branch_length>
+                          <taxonomy>
+                                <code>gma</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GM04G41540</property>
+                              <sequence>
+                                <domain_architecture length="2192">
+                                  <domain confidence="1.1E-22" from="1698" to="1809">IPR028261</domain>
+                                  <domain confidence="3.6E-68" from="1376" to="1569">IPR002489</domain>
+                                  <domain confidence="2.8E-118" from="571" to="859">IPR006982</domain>
+                                  <domain confidence="1.57E-99" from="1347" to="1611">IPR002489</domain>
+                                  <domain confidence="6.8E-36" from="1675" to="1830">IPR009051</domain>
+                                  <domain confidence="4.7E-103" from="566" to="909">IPR013785</domain>
+                                  <domain confidence="6.1E-162" from="924" to="1295">IPR002932</domain>
+                                  <domain confidence="2.0E-180" from="963" to="1335">IPR013785</domain>
+                                  <domain confidence="5.4E-226" from="1676" to="2161">IPR006005</domain>
+                                  <domain confidence="3.4E-142" from="97" to="470">IPR000583</domain>
+                                  <domain confidence="3.7E-39" from="2094" to="2168">IPR016040</domain>
+                                  <domain confidence="3.7E-39" from="1824" to="1914">IPR016040</domain>
+                                  <domain confidence="23.496" from="97" to="498">IPR017932</domain>
+                                  <domain confidence="3.1E-107" from="1353" to="1623">IPR002489</domain>
+                                  <domain confidence="2.4E-15" from="1822" to="2136">IPR023753</domain>
+                                  <domain confidence="3.1E-5" from="1822" to="1859">IPR001327</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                        </clade>
+                        <clade>
+                          <branch_length>0.01435</branch_length>
+                          <confidence type="bootstrap">98.0</confidence>
+                          <clade>
+                            <branch_length>0.01562</branch_length>
+                            <confidence type="bootstrap">100.0</confidence>
+                            <clade>
+                              <name>GM19G16486</name>
+                              <branch_length>0.01946</branch_length>
+                            <taxonomy>
+                                  <code>gma</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GM19G16486</property>
+                                <sequence>
+                                  <domain_architecture length="1896">
+                                    <domain confidence="3.4E-69" from="1075" to="1265">IPR002489</domain>
+                                    <domain confidence="8.3E-69" from="4" to="169">IPR000583</domain>
+                                    <domain confidence="6.1E-223" from="1374" to="1859">IPR006005</domain>
+                                    <domain confidence="4.97E-100" from="1046" to="1310">IPR002489</domain>
+                                    <domain confidence="14.193" from="1" to="197">IPR017932</domain>
+                                    <domain confidence="2.5E-100" from="265" to="595">IPR013785</domain>
+                                    <domain confidence="9.8E-118" from="270" to="558">IPR006982</domain>
+                                    <domain confidence="8.1E-16" from="1520" to="1834">IPR023753</domain>
+                                    <domain confidence="9.8E-179" from="661" to="1034">IPR013785</domain>
+                                    <domain confidence="2.0E-39" from="1792" to="1888">IPR016040</domain>
+                                    <domain confidence="6.0E-161" from="624" to="994">IPR002932</domain>
+                                    <domain confidence="5.3E-5" from="1520" to="1554">IPR001327</domain>
+                                    <domain confidence="1.0E-22" from="1396" to="1507">IPR028261</domain>
+                                    <domain confidence="3.61E-36" from="1372" to="1528">IPR009051</domain>
+                                    <domain confidence="3.7E-108" from="1052" to="1319">IPR002489</domain>
+                                    <domain confidence="2.0E-39" from="1522" to="1611">IPR016040</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                            <clade>
+                              <name>GM14G32500</name>
+                              <branch_length>0.01671</branch_length>
+                            <taxonomy>
+                                  <code>gma</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GM14G32500</property>
+                                <sequence>
+                                  <domain_architecture length="2124">
+                                    <domain confidence="3.3E-24" from="1665" to="1761">IPR009051</domain>
+                                    <domain confidence="3.5E-5" from="1753" to="1790">IPR001327</domain>
+                                    <domain confidence="1.8E-107" from="1354" to="1621">IPR002489</domain>
+                                    <domain confidence="2.5E-142" from="98" to="471">IPR000583</domain>
+                                    <domain confidence="9.5E-206" from="1661" to="2092">IPR006005</domain>
+                                    <domain confidence="7.9E-161" from="926" to="1296">IPR002932</domain>
+                                    <domain confidence="2.1E-178" from="963" to="1336">IPR013785</domain>
+                                    <domain confidence="2.9E-16" from="1753" to="2067">IPR023753</domain>
+                                    <domain confidence="4.9E-68" from="1377" to="1566">IPR002489</domain>
+                                    <domain confidence="4.6E-18" from="1660" to="1740">IPR028261</domain>
+                                    <domain confidence="5.4E-118" from="572" to="860">IPR006982</domain>
+                                    <domain confidence="2.75E-99" from="1348" to="1612">IPR002489</domain>
+                                    <domain confidence="1.3E-102" from="561" to="897">IPR013785</domain>
+                                    <domain confidence="23.399" from="98" to="499">IPR017932</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                          </clade>
+                          <clade>
+                            <name>MT1G027020</name>
+                            <branch_length>0.05076</branch_length>
+                          <taxonomy>
+                                <code>mtr</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/MT1G027020</property>
+                              <sequence>
+                                <domain_architecture length="2195">
+                                  <domain confidence="23.476" from="102" to="503">IPR017932</domain>
+                                  <domain confidence="5.18E-36" from="1678" to="1834">IPR009051</domain>
+                                  <domain confidence="1.1E-106" from="1358" to="1627">IPR002489</domain>
+                                  <domain confidence="2.7E-143" from="102" to="475">IPR000583</domain>
+                                  <domain confidence="1.1E-22" from="1705" to="1813">IPR028261</domain>
+                                  <domain confidence="2.0E-17" from="1826" to="2140">IPR023753</domain>
+                                  <domain confidence="2.6E-177" from="968" to="1338">IPR013785</domain>
+                                  <domain confidence="5.0E-69" from="1381" to="1570">IPR002489</domain>
+                                  <domain confidence="1.1E-160" from="929" to="1300">IPR002932</domain>
+                                  <domain confidence="1.3E-39" from="2098" to="2171">IPR016040</domain>
+                                  <domain confidence="5.2E-119" from="576" to="864">IPR006982</domain>
+                                  <domain confidence="8.3E-5" from="1826" to="1860">IPR001327</domain>
+                                  <domain confidence="1.3E-39" from="1828" to="1917">IPR016040</domain>
+                                  <domain confidence="4.6E-226" from="1680" to="2165">IPR006005</domain>
+                                  <domain confidence="4.5E-105" from="565" to="902">IPR013785</domain>
+                                  <domain confidence="6.54E-99" from="1352" to="1616">IPR002489</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                        </clade>
+                      </clade>
+                    </clade>
+                  </clade>
+                  <clade>
+                    <name>EG0001G12000</name>
+                    <branch_length>0.0581</branch_length>
+                  <taxonomy>
+                        <code>egr</code>
+                      </taxonomy>
+                      <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/EG0001G12000</property>
+                      <sequence>
+                        <domain_architecture length="2219">
+                          <domain confidence="3.4E-160" from="944" to="1314">IPR002932</domain>
+                          <domain confidence="2.88E-36" from="1696" to="1853">IPR009051</domain>
+                          <domain confidence="23.496" from="113" to="517">IPR017932</domain>
+                          <domain confidence="1.02E-97" from="1366" to="1629">IPR002489</domain>
+                          <domain confidence="5.6E-179" from="987" to="1354">IPR013785</domain>
+                          <domain confidence="9.6E-119" from="590" to="878">IPR006982</domain>
+                          <domain confidence="2.8E-104" from="581" to="916">IPR013785</domain>
+                          <domain confidence="5.3E-145" from="113" to="489">IPR000583</domain>
+                          <domain confidence="1.0E-106" from="1372" to="1643">IPR002489</domain>
+                          <domain confidence="4.8E-226" from="1698" to="2182">IPR006005</domain>
+                          <domain confidence="2.5E-67" from="1395" to="1587">IPR002489</domain>
+                          <domain confidence="1.6E-17" from="1844" to="2158">IPR023753</domain>
+                          <domain confidence="1.2E-22" from="1720" to="1831">IPR028261</domain>
+                        </domain_architecture>
+                      </sequence>
+                    </clade>
+                </clade>
+                <clade>
+                  <branch_length>0.00578</branch_length>
+                  <confidence type="bootstrap">42.0</confidence>
+                  <clade>
+                    <branch_length>0.01143</branch_length>
+                    <confidence type="bootstrap">53.0</confidence>
+                    <clade>
+                      <branch_length>0.05501</branch_length>
+                      <confidence type="bootstrap">100.0</confidence>
+                      <clade>
+                        <name>ST03G013400</name>
+                        <branch_length>0.00453</branch_length>
+                      <taxonomy>
+                            <code>stu</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ST03G013400</property>
+                          <sequence>
+                            <domain_architecture length="2211">
+                              <domain confidence="2.0E-143" from="118" to="494">IPR000583</domain>
+                              <domain confidence="6.2E-228" from="1702" to="2187">IPR006005</domain>
+                              <domain confidence="5.2E-103" from="588" to="922">IPR013785</domain>
+                              <domain confidence="6.28E-36" from="1700" to="1856">IPR009051</domain>
+                              <domain confidence="2.1E-18" from="1848" to="2162">IPR023753</domain>
+                              <domain confidence="1.57E-98" from="1371" to="1635">IPR002489</domain>
+                              <domain confidence="4.8E-108" from="1378" to="1647">IPR002489</domain>
+                              <domain confidence="8.7E-6" from="1848" to="1919">IPR001327</domain>
+                              <domain confidence="4.3E-118" from="595" to="883">IPR006982</domain>
+                              <domain confidence="1.2E-41" from="1850" to="1939">IPR016040</domain>
+                              <domain confidence="1.8E-22" from="1724" to="1835">IPR028261</domain>
+                              <domain confidence="1.2E-41" from="2120" to="2200">IPR016040</domain>
+                              <domain confidence="1.9E-160" from="949" to="1319">IPR002932</domain>
+                              <domain confidence="23.496" from="118" to="522">IPR017932</domain>
+                              <domain confidence="1.7E-178" from="986" to="1359">IPR013785</domain>
+                              <domain confidence="5.2E-68" from="1400" to="1592">IPR002489</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                      <clade>
+                        <name>SL03G083440</name>
+                        <branch_length>0.00744</branch_length>
+                      <taxonomy>
+                            <code>sly</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/SL03G083440</property>
+                          <sequence>
+                            <domain_architecture length="2227">
+                              <domain confidence="1.9E-18" from="1864" to="2178">IPR023753</domain>
+                              <domain confidence="1.2E-142" from="134" to="510">IPR000583</domain>
+                              <domain confidence="1.0E-160" from="965" to="1335">IPR002932</domain>
+                              <domain confidence="1.0E-178" from="1002" to="1375">IPR013785</domain>
+                              <domain confidence="6.0E-68" from="1416" to="1609">IPR002489</domain>
+                              <domain confidence="8.8E-6" from="1864" to="1935">IPR001327</domain>
+                              <domain confidence="1.8E-103" from="604" to="938">IPR013785</domain>
+                              <domain confidence="2.3E-22" from="1741" to="1851">IPR028261</domain>
+                              <domain confidence="1.26E-35" from="1716" to="1872">IPR009051</domain>
+                              <domain confidence="1.2E-41" from="2136" to="2216">IPR016040</domain>
+                              <domain confidence="23.437" from="134" to="538">IPR017932</domain>
+                              <domain confidence="1.2E-41" from="1866" to="1955">IPR016040</domain>
+                              <domain confidence="6.28E-99" from="1387" to="1651">IPR002489</domain>
+                              <domain confidence="4.6E-227" from="1718" to="2203">IPR006005</domain>
+                              <domain confidence="1.9E-118" from="611" to="899">IPR006982</domain>
+                              <domain confidence="8.3E-108" from="1393" to="1663">IPR002489</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                    </clade>
+                    <clade>
+                      <branch_length>0.06267</branch_length>
+                      <confidence type="bootstrap">100.0</confidence>
+                      <clade>
+                        <branch_length>0.00973</branch_length>
+                        <confidence type="bootstrap">98.0</confidence>
+                        <clade>
+                          <name>BR03G13520</name>
+                          <branch_length>0.01725</branch_length>
+                        <taxonomy>
+                              <code>bra</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/BR03G13520</property>
+                            <sequence>
+                              <domain_architecture length="2200">
+                                <domain confidence="3.2E-107" from="1366" to="1635">IPR002489</domain>
+                                <domain confidence="23.224" from="107" to="511">IPR017932</domain>
+                                <domain confidence="5.6E-120" from="583" to="872">IPR006982</domain>
+                                <domain confidence="4.4E-144" from="107" to="483">IPR000583</domain>
+                                <domain confidence="2.1E-68" from="1389" to="1582">IPR002489</domain>
+                                <domain confidence="5.9E-224" from="1694" to="2178">IPR006005</domain>
+                                <domain confidence="1.6E-22" from="1717" to="1827">IPR028261</domain>
+                                <domain confidence="3.7E-5" from="1840" to="1910">IPR001327</domain>
+                                <domain confidence="6.5E-159" from="937" to="1308">IPR002932</domain>
+                                <domain confidence="1.1E-36" from="1692" to="1849">IPR009051</domain>
+                                <domain confidence="1.9E-178" from="956" to="1348">IPR013785</domain>
+                                <domain confidence="1.1E-105" from="574" to="913">IPR013785</domain>
+                                <domain confidence="1.1E-18" from="1840" to="2154">IPR023753</domain>
+                                <domain confidence="1.02E-98" from="1360" to="1625">IPR002489</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                        <clade>
+                          <name>TP6G15590</name>
+                          <branch_length>0.00924</branch_length>
+                        <taxonomy>
+                              <code>tpa</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/TP6G15590</property>
+                            <sequence>
+                              <domain_architecture length="2210">
+                                <domain confidence="3.3E-22" from="1726" to="1834">IPR028261</domain>
+                                <domain confidence="5.7E-105" from="586" to="925">IPR013785</domain>
+                                <domain confidence="1.31E-98" from="1369" to="1635">IPR002489</domain>
+                                <domain confidence="1.5E-224" from="1702" to="2186">IPR006005</domain>
+                                <domain confidence="2.4E-178" from="965" to="1357">IPR013785</domain>
+                                <domain confidence="2.46E-36" from="1700" to="1857">IPR009051</domain>
+                                <domain confidence="23.224" from="116" to="520">IPR017932</domain>
+                                <domain confidence="5.8E-19" from="1848" to="2162">IPR023753</domain>
+                                <domain confidence="5.9E-108" from="1375" to="1644">IPR002489</domain>
+                                <domain confidence="5.3E-120" from="592" to="881">IPR006982</domain>
+                                <domain confidence="1.2E-143" from="116" to="492">IPR000583</domain>
+                                <domain confidence="6.9E-68" from="1398" to="1590">IPR002489</domain>
+                                <domain confidence="4.7E-159" from="946" to="1317">IPR002932</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                      </clade>
+                      <clade>
+                        <branch_length>0.01019</branch_length>
+                        <confidence type="bootstrap">98.0</confidence>
+                        <clade>
+                          <branch_length>0.01008</branch_length>
+                          <confidence type="bootstrap">100.0</confidence>
+                          <clade>
+                            <name>AL8G18120</name>
+                            <branch_length>0.00209</branch_length>
+                          <taxonomy>
+                                <code>aly</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/AL8G18120</property>
+                              <sequence>
+                                <domain_architecture length="2208">
+                                  <domain confidence="23.205" from="117" to="521">IPR017932</domain>
+                                  <domain confidence="1.2E-223" from="1700" to="2184">IPR006005</domain>
+                                  <domain confidence="3.4E-5" from="1846" to="1883">IPR001327</domain>
+                                  <domain confidence="8.6E-20" from="1846" to="2160">IPR023753</domain>
+                                  <domain confidence="3.71E-36" from="1698" to="1855">IPR009051</domain>
+                                  <domain confidence="2.3E-107" from="1376" to="1645">IPR002489</domain>
+                                  <domain confidence="3.6E-144" from="117" to="493">IPR000583</domain>
+                                  <domain confidence="1.9E-177" from="966" to="1358">IPR013785</domain>
+                                  <domain confidence="3.6E-104" from="583" to="921">IPR013785</domain>
+                                  <domain confidence="2.88E-98" from="1370" to="1636">IPR002489</domain>
+                                  <domain confidence="2.6E-120" from="593" to="882">IPR006982</domain>
+                                  <domain confidence="1.1E-159" from="947" to="1318">IPR002932</domain>
+                                  <domain confidence="1.8E-22" from="1724" to="1833">IPR028261</domain>
+                                  <domain confidence="6.6E-68" from="1399" to="1592">IPR002489</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                          <clade>
+                            <name>AT5G53460</name>
+                            <branch_length>0.0056</branch_length>
+                          <taxonomy>
+                                <code>ath</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/AT5G53460</property>
+                              <sequence>
+                                <domain_architecture length="2209">
+                                  <domain confidence="2.6E-120" from="593" to="882">IPR006982</domain>
+                                  <domain confidence="5.75E-36" from="1700" to="1856">IPR009051</domain>
+                                  <domain confidence="6.2E-67" from="1399" to="1592">IPR002489</domain>
+                                  <domain confidence="23.147" from="117" to="521">IPR017932</domain>
+                                  <domain confidence="4.5E-178" from="966" to="1358">IPR013785</domain>
+                                  <domain confidence="2.7E-39" from="1849" to="1938">IPR016040</domain>
+                                  <domain confidence="2.7E-39" from="2119" to="2194">IPR016040</domain>
+                                  <domain confidence="7.2E-144" from="117" to="493">IPR000583</domain>
+                                  <domain confidence="4.5E-104" from="583" to="924">IPR013785</domain>
+                                  <domain confidence="1.2E-159" from="947" to="1318">IPR002932</domain>
+                                  <domain confidence="2.9E-223" from="1701" to="2185">IPR006005</domain>
+                                  <domain confidence="7.1E-19" from="1847" to="2161">IPR023753</domain>
+                                  <domain confidence="6.93E-98" from="1370" to="1636">IPR002489</domain>
+                                  <domain confidence="3.4E-107" from="1376" to="1645">IPR002489</domain>
+                                  <domain confidence="1.8E-22" from="1725" to="1834">IPR028261</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                        </clade>
+                        <clade>
+                          <name>CRU_008G13300</name>
+                          <branch_length>0.00714</branch_length>
+                        <taxonomy>
+                              <code>cru</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CRU_008G13300</property>
+                            <sequence>
+                              <domain_architecture length="2209">
+                                <domain confidence="6.4E-224" from="1702" to="2186">IPR006005</domain>
+                                <domain confidence="2.41E-36" from="1700" to="1857">IPR009051</domain>
+                                <domain confidence="23.108" from="116" to="520">IPR017932</domain>
+                                <domain confidence="3.1E-159" from="946" to="1317">IPR002932</domain>
+                                <domain confidence="1.2E-120" from="592" to="881">IPR006982</domain>
+                                <domain confidence="2.3E-178" from="965" to="1357">IPR013785</domain>
+                                <domain confidence="1.7E-22" from="1726" to="1835">IPR028261</domain>
+                                <domain confidence="1.7E-98" from="1369" to="1635">IPR002489</domain>
+                                <domain confidence="1.2E-107" from="1375" to="1644">IPR002489</domain>
+                                <domain confidence="5.2E-68" from="1398" to="1591">IPR002489</domain>
+                                <domain confidence="3.7E-18" from="1848" to="2162">IPR023753</domain>
+                                <domain confidence="4.3E-145" from="116" to="492">IPR000583</domain>
+                                <domain confidence="3.2E-105" from="582" to="919">IPR013785</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                      </clade>
+                    </clade>
+                  </clade>
+                  <clade>
+                    <branch_length>0.01215</branch_length>
+                    <confidence type="bootstrap">94.0</confidence>
+                    <clade>
+                      <name>VV16G10380</name>
+                      <branch_length>0.03509</branch_length>
+                    <taxonomy>
+                          <code>vvi</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/VV16G10380</property>
+                        <sequence>
+                          <domain_architecture length="2217">
+                            <domain confidence="2.2E-105" from="591" to="922">IPR013785</domain>
+                            <domain confidence="6.8E-18" from="1851" to="2165">IPR023753</domain>
+                            <domain confidence="1.6E-40" from="2125" to="2198">IPR016040</domain>
+                            <domain confidence="3.1E-145" from="119" to="495">IPR000583</domain>
+                            <domain confidence="2.0E-22" from="1729" to="1838">IPR028261</domain>
+                            <domain confidence="7.2E-162" from="949" to="1320">IPR002932</domain>
+                            <domain confidence="3.7E-67" from="1401" to="1593">IPR002489</domain>
+                            <domain confidence="1.6E-40" from="1853" to="1942">IPR016040</domain>
+                            <domain confidence="6.5E-109" from="1378" to="1647">IPR002489</domain>
+                            <domain confidence="23.651" from="119" to="523">IPR017932</domain>
+                            <domain confidence="5.0E-226" from="1705" to="2190">IPR006005</domain>
+                            <domain confidence="1.5E-180" from="987" to="1360">IPR013785</domain>
+                            <domain confidence="1.3E-119" from="596" to="884">IPR006982</domain>
+                            <domain confidence="2.75E-98" from="1372" to="1637">IPR002489</domain>
+                            <domain confidence="9.42E-36" from="1703" to="1860">IPR009051</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                    <clade>
+                      <name>BV3G02260</name>
+                      <branch_length>0.08047</branch_length>
+                    <taxonomy>
+                          <code>bvu</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/BV3G02260</property>
+                        <sequence>
+                          <domain_architecture length="2210">
+                            <domain confidence="6.2E-103" from="576" to="917">IPR013785</domain>
+                            <domain confidence="2.75E-99" from="1366" to="1630">IPR002489</domain>
+                            <domain confidence="7.3E-5" from="1843" to="1877">IPR001327</domain>
+                            <domain confidence="3.4E-22" from="1720" to="1830">IPR028261</domain>
+                            <domain confidence="2.6E-67" from="1395" to="1588">IPR002489</domain>
+                            <domain confidence="5.6E-117" from="590" to="878">IPR006982</domain>
+                            <domain confidence="5.02E-36" from="1696" to="1851">IPR009051</domain>
+                            <domain confidence="23.767" from="113" to="517">IPR017932</domain>
+                            <domain confidence="6.2E-231" from="1697" to="2183">IPR006005</domain>
+                            <domain confidence="1.3E-144" from="113" to="489">IPR000583</domain>
+                            <domain confidence="4.4E-41" from="1845" to="1934">IPR016040</domain>
+                            <domain confidence="1.1E-157" from="943" to="1314">IPR002932</domain>
+                            <domain confidence="7.4E-16" from="1843" to="2157">IPR023753</domain>
+                            <domain confidence="4.4E-41" from="2115" to="2190">IPR016040</domain>
+                            <domain confidence="1.5E-107" from="1372" to="1636">IPR002489</domain>
+                            <domain confidence="1.1E-179" from="976" to="1354">IPR013785</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                  </clade>
+                </clade>
+              </clade>
+              <clade>
+                <branch_length>0.00374</branch_length>
+                <confidence type="bootstrap">40.0</confidence>
+                <clade>
+                  <branch_length>0.00348</branch_length>
+                  <confidence type="bootstrap">18.0</confidence>
+                  <clade>
+                    <branch_length>0.01535</branch_length>
+                    <confidence type="bootstrap">100.0</confidence>
+                    <clade>
+                      <name>TC0003G19640</name>
+                      <branch_length>0.01664</branch_length>
+                    <taxonomy>
+                          <code>tca</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/TC0003G19640</property>
+                        <sequence>
+                          <domain_architecture length="2118">
+                            <domain confidence="4.7E-5" from="1847" to="1884">IPR001327</domain>
+                            <domain confidence="8.4E-120" from="593" to="881">IPR006982</domain>
+                            <domain confidence="6.9E-180" from="984" to="1358">IPR013785</domain>
+                            <domain confidence="1.1E-20" from="1849" to="1945">IPR016040</domain>
+                            <domain confidence="3.53E-99" from="1369" to="1633">IPR002489</domain>
+                            <domain confidence="1.2E-35" from="1699" to="1855">IPR009051</domain>
+                            <domain confidence="2.0E-22" from="1723" to="1834">IPR028261</domain>
+                            <domain confidence="1.0E-143" from="116" to="492">IPR000583</domain>
+                            <domain confidence="2.1E-109" from="1375" to="1644">IPR002489</domain>
+                            <domain confidence="5.9E-193" from="1701" to="2117">IPR006005</domain>
+                            <domain confidence="2.6E-160" from="946" to="1317">IPR002932</domain>
+                            <domain confidence="6.5E-105" from="580" to="920">IPR013785</domain>
+                            <domain confidence="23.147" from="116" to="520">IPR017932</domain>
+                            <domain confidence="8.8E-68" from="1398" to="1591">IPR002489</domain>
+                            <domain confidence="3.3E-11" from="1848" to="2053">IPR023753</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                    <clade>
+                      <name>GR08G26960</name>
+                      <branch_length>0.01978</branch_length>
+                    <taxonomy>
+                          <code>gra</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GR08G26960</property>
+                        <sequence>
+                          <domain_architecture length="2210">
+                            <domain confidence="4.2E-119" from="591" to="879">IPR006982</domain>
+                            <domain confidence="2.8E-227" from="1695" to="2180">IPR006005</domain>
+                            <domain confidence="2.09E-35" from="1693" to="1849">IPR009051</domain>
+                            <domain confidence="1.6E-108" from="1373" to="1646">IPR002489</domain>
+                            <domain confidence="23.418" from="114" to="518">IPR017932</domain>
+                            <domain confidence="2.22E-98" from="1367" to="1632">IPR002489</domain>
+                            <domain confidence="6.2E-105" from="585" to="917">IPR013785</domain>
+                            <domain confidence="4.3E-180" from="981" to="1356">IPR013785</domain>
+                            <domain confidence="3.8E-41" from="1843" to="1932">IPR016040</domain>
+                            <domain confidence="3.6E-160" from="944" to="1315">IPR002932</domain>
+                            <domain confidence="7.7E-22" from="1718" to="1827">IPR028261</domain>
+                            <domain confidence="8.9E-145" from="114" to="490">IPR000583</domain>
+                            <domain confidence="6.3E-5" from="1841" to="1875">IPR001327</domain>
+                            <domain confidence="1.8E-67" from="1396" to="1587">IPR002489</domain>
+                            <domain confidence="6.6E-18" from="1842" to="2155">IPR023753</domain>
+                            <domain confidence="3.8E-41" from="2113" to="2202">IPR016040</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                  </clade>
+                  <clade>
+                    <name>CP00003G00680</name>
+                    <branch_length>0.10482</branch_length>
+                  <taxonomy>
+                        <code>cpa</code>
+                      </taxonomy>
+                      <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CP00003G00680</property>
+                      <sequence>
+                        <domain_architecture length="2013">
+                          <domain confidence="1.9E-22" from="1519" to="1629">IPR028261</domain>
+                          <domain confidence="3.5E-41" from="1914" to="2002">IPR016040</domain>
+                          <domain confidence="13.748" from="113" to="340">IPR017932</domain>
+                          <domain confidence="5.3E-17" from="1642" to="1956">IPR023753</domain>
+                          <domain confidence="4.39E-36" from="1494" to="1650">IPR009051</domain>
+                          <domain confidence="1.83E-97" from="1167" to="1431">IPR002489</domain>
+                          <domain confidence="2.4E-106" from="398" to="739">IPR013785</domain>
+                          <domain confidence="1.5E-110" from="767" to="1041">IPR002932</domain>
+                          <domain confidence="2.6E-6" from="1102" to="1155">IPR013785</domain>
+                          <domain confidence="8.5E-227" from="1496" to="1980">IPR006005</domain>
+                          <domain confidence="9.5E-5" from="1642" to="1679">IPR001327</domain>
+                          <domain confidence="2.6E-44" from="182" to="312">IPR000583</domain>
+                          <domain confidence="1.0E-15" from="113" to="173">IPR000583</domain>
+                          <domain confidence="3.5E-41" from="1644" to="1733">IPR016040</domain>
+                          <domain confidence="3.0E-113" from="789" to="1041">IPR013785</domain>
+                          <domain confidence="2.2E-66" from="1196" to="1388">IPR002489</domain>
+                          <domain confidence="6.5E-119" from="413" to="701">IPR006982</domain>
+                          <domain confidence="3.6E-105" from="1174" to="1440">IPR002489</domain>
+                        </domain_architecture>
+                      </sequence>
+                    </clade>
+                </clade>
+                <clade>
+                  <branch_length>0.00744</branch_length>
+                  <confidence type="bootstrap">89.0</confidence>
+                  <clade>
+                    <branch_length>0.03076</branch_length>
+                    <confidence type="bootstrap">100.0</confidence>
+                    <clade>
+                      <name>PT12G01170</name>
+                      <branch_length>0.0336</branch_length>
+                    <taxonomy>
+                          <code>ptr</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PT12G01170</property>
+                        <sequence>
+                          <domain_architecture length="2231">
+                            <domain confidence="2.4E-160" from="953" to="1324">IPR002932</domain>
+                            <domain confidence="5.6E-144" from="123" to="499">IPR000583</domain>
+                            <domain confidence="6.02E-99" from="1376" to="1641">IPR002489</domain>
+                            <domain confidence="2.8E-108" from="1382" to="1651">IPR002489</domain>
+                            <domain confidence="22.255" from="123" to="527">IPR017932</domain>
+                            <domain confidence="1.1E-4" from="1856" to="1926">IPR001327</domain>
+                            <domain confidence="5.7E-17" from="1856" to="2170">IPR023753</domain>
+                            <domain confidence="1.5E-102" from="595" to="926">IPR013785</domain>
+                            <domain confidence="8.8E-225" from="1708" to="2196">IPR006005</domain>
+                            <domain confidence="1.1E-66" from="1405" to="1598">IPR002489</domain>
+                            <domain confidence="1.6E-40" from="2130" to="2215">IPR016040</domain>
+                            <domain confidence="1.7E-117" from="600" to="888">IPR006982</domain>
+                            <domain confidence="5.23E-35" from="1706" to="1864">IPR009051</domain>
+                            <domain confidence="9.2E-179" from="991" to="1364">IPR013785</domain>
+                            <domain confidence="6.3E-22" from="1731" to="1843">IPR028261</domain>
+                            <domain confidence="1.6E-40" from="1858" to="1947">IPR016040</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                    <clade>
+                      <name>PT15G01750</name>
+                      <branch_length>0.0181</branch_length>
+                    <taxonomy>
+                          <code>ptr</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PT15G01750</property>
+                        <sequence>
+                          <domain_architecture length="2222">
+                            <domain confidence="6.9E-179" from="989" to="1363">IPR013785</domain>
+                            <domain confidence="5.6E-66" from="1403" to="1596">IPR002489</domain>
+                            <domain confidence="1.31E-98" from="1374" to="1639">IPR002489</domain>
+                            <domain confidence="3.4E-39" from="1856" to="1946">IPR016040</domain>
+                            <domain confidence="2.7E-103" from="583" to="924">IPR013785</domain>
+                            <domain confidence="2.2E-117" from="598" to="886">IPR006982</domain>
+                            <domain confidence="3.4E-39" from="2117" to="2209">IPR016040</domain>
+                            <domain confidence="3.71E-35" from="1707" to="1862">IPR009051</domain>
+                            <domain confidence="8.3E-5" from="1854" to="1901">IPR001327</domain>
+                            <domain confidence="8.1E-14" from="1854" to="2161">IPR023753</domain>
+                            <domain confidence="9.6E-23" from="1730" to="1841">IPR028261</domain>
+                            <domain confidence="23.496" from="121" to="525">IPR017932</domain>
+                            <domain confidence="6.6E-108" from="1380" to="1649">IPR002489</domain>
+                            <domain confidence="1.1E-216" from="1708" to="2187">IPR006005</domain>
+                            <domain confidence="2.0E-144" from="121" to="497">IPR000583</domain>
+                            <domain confidence="5.0E-161" from="951" to="1322">IPR002932</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                  </clade>
+                  <clade>
+                    <branch_length>0.00484</branch_length>
+                    <confidence type="bootstrap">40.0</confidence>
+                    <clade>
+                      <branch_length>0.00517</branch_length>
+                      <confidence type="bootstrap">87.0</confidence>
+                      <clade>
+                        <branch_length>0.0099</branch_length>
+                        <confidence type="bootstrap">98.0</confidence>
+                        <clade>
+                          <name>ME06089G00070</name>
+                          <branch_length>0.02234</branch_length>
+                        <taxonomy>
+                              <code>mes</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ME06089G00070</property>
+                            <sequence>
+                              <domain_architecture length="2224">
+                                <domain confidence="2.1E-106" from="1380" to="1645">IPR002489</domain>
+                                <domain confidence="1.2E-66" from="1403" to="1595">IPR002489</domain>
+                                <domain confidence="3.6E-160" from="945" to="1316">IPR002932</domain>
+                                <domain confidence="1.5E-17" from="1850" to="2163">IPR023753</domain>
+                                <domain confidence="5.8E-22" from="1727" to="1835">IPR028261</domain>
+                                <domain confidence="2.3E-104" from="580" to="918">IPR013785</domain>
+                                <domain confidence="2.62E-98" from="1374" to="1639">IPR002489</domain>
+                                <domain confidence="6.28E-36" from="1701" to="1858">IPR009051</domain>
+                                <domain confidence="1.3E-225" from="1703" to="2188">IPR006005</domain>
+                                <domain confidence="23.03" from="114" to="519">IPR017932</domain>
+                                <domain confidence="4.5E-180" from="983" to="1353">IPR013785</domain>
+                                <domain confidence="3.8E-119" from="592" to="880">IPR006982</domain>
+                                <domain confidence="5.0E-141" from="114" to="491">IPR000583</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                        <clade>
+                          <name>ME06633G00020</name>
+                          <branch_length>0.03547</branch_length>
+                        <taxonomy>
+                              <code>mes</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ME06633G00020</property>
+                            <sequence>
+                              <domain_architecture length="2215">
+                                <domain confidence="2.4E-22" from="1720" to="1831">IPR028261</domain>
+                                <domain confidence="23.011" from="115" to="519">IPR017932</domain>
+                                <domain confidence="5.5E-106" from="1374" to="1640">IPR002489</domain>
+                                <domain confidence="4.3E-144" from="115" to="491">IPR000583</domain>
+                                <domain confidence="1.67E-36" from="1696" to="1853">IPR009051</domain>
+                                <domain confidence="1.6E-103" from="576" to="918">IPR013785</domain>
+                                <domain confidence="1.8E-66" from="1397" to="1590">IPR002489</domain>
+                                <domain confidence="1.6E-17" from="1844" to="2158">IPR023753</domain>
+                                <domain confidence="2.2E-225" from="1698" to="2183">IPR006005</domain>
+                                <domain confidence="4.2E-119" from="592" to="880">IPR006982</domain>
+                                <domain confidence="2.1E-179" from="984" to="1357">IPR013785</domain>
+                                <domain confidence="7.4E-161" from="945" to="1315">IPR002932</domain>
+                                <domain confidence="8.11E-98" from="1367" to="1632">IPR002489</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                      </clade>
+                      <clade>
+                        <name>RC30169G02700</name>
+                        <branch_length>0.02629</branch_length>
+                      <taxonomy>
+                            <code>rco</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/RC30169G02700</property>
+                          <sequence>
+                            <domain_architecture length="2216">
+                              <domain confidence="1.9E-39" from="2116" to="2193">IPR016040</domain>
+                              <domain confidence="3.8E-225" from="1698" to="2184">IPR006005</domain>
+                              <domain confidence="4.6E-159" from="946" to="1317">IPR002932</domain>
+                              <domain confidence="1.1E-178" from="985" to="1358">IPR013785</domain>
+                              <domain confidence="1.1E-119" from="593" to="881">IPR006982</domain>
+                              <domain confidence="3.3E-18" from="1844" to="2158">IPR023753</domain>
+                              <domain confidence="7.2E-107" from="1375" to="1645">IPR002489</domain>
+                              <domain confidence="2.3E-104" from="581" to="919">IPR013785</domain>
+                              <domain confidence="23.263" from="116" to="520">IPR017932</domain>
+                              <domain confidence="1.0E-144" from="116" to="492">IPR000583</domain>
+                              <domain confidence="3.4E-98" from="1368" to="1633">IPR002489</domain>
+                              <domain confidence="1.05E-36" from="1697" to="1853">IPR009051</domain>
+                              <domain confidence="2.7E-22" from="1721" to="1831">IPR028261</domain>
+                              <domain confidence="1.4E-66" from="1398" to="1590">IPR002489</domain>
+                              <domain confidence="1.9E-39" from="1846" to="1935">IPR016040</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                    </clade>
+                    <clade>
+                      <name>CS00328G00100</name>
+                      <branch_length>0.04624</branch_length>
+                    <taxonomy>
+                          <code>csi</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CS00328G00100</property>
+                        <sequence>
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+                            <domain confidence="1.4E-144" from="115" to="491">IPR000583</domain>
+                            <domain confidence="1.6E-161" from="945" to="1316">IPR002932</domain>
+                            <domain confidence="2.3E-103" from="578" to="918">IPR013785</domain>
+                            <domain confidence="22.914" from="115" to="519">IPR017932</domain>
+                            <domain confidence="1.9E-105" from="1374" to="1645">IPR002489</domain>
+                            <domain confidence="1.1E-8" from="1698" to="1756">IPR009051</domain>
+                            <domain confidence="2.4E-118" from="592" to="880">IPR006982</domain>
+                            <domain confidence="1.6E-64" from="1397" to="1586">IPR002489</domain>
+                            <domain confidence="1.6E-179" from="983" to="1354">IPR013785</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                  </clade>
+                </clade>
+              </clade>
+            </clade>
+            <clade>
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+              <branch_length>0.06922</branch_length>
+            <taxonomy>
+                  <code>atr</code>
+                </taxonomy>
+                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ATR_00021G02760</property>
+                <sequence>
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+                    <domain confidence="5.8E-103" from="573" to="914">IPR013785</domain>
+                    <domain confidence="3.5E-40" from="2108" to="2195">IPR016040</domain>
+                    <domain confidence="3.4E-181" from="978" to="1352">IPR013785</domain>
+                    <domain confidence="3.5E-40" from="1838" to="1928">IPR016040</domain>
+                    <domain confidence="6.2E-142" from="110" to="486">IPR000583</domain>
+                    <domain confidence="5.4E-17" from="1836" to="2150">IPR023753</domain>
+                    <domain confidence="1.3E-67" from="1391" to="1584">IPR002489</domain>
+                    <domain confidence="5.7E-110" from="1370" to="1642">IPR002489</domain>
+                    <domain confidence="9.1E-160" from="940" to="1311">IPR002932</domain>
+                    <domain confidence="22.875" from="110" to="514">IPR017932</domain>
+                    <domain confidence="4.19E-99" from="1362" to="1628">IPR002489</domain>
+                    <domain confidence="2.1E-226" from="1690" to="2174">IPR006005</domain>
+                    <domain confidence="1.2E-22" from="1712" to="1823">IPR028261</domain>
+                    <domain confidence="1.7E-117" from="587" to="875">IPR006982</domain>
+                  </domain_architecture>
+                </sequence>
+              </clade>
+          </clade>
+        </clade>
+      </clade>
+      <clade>
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+        <branch_length>0.32429</branch_length>
+      <taxonomy>
+            <code>cre</code>
+          </taxonomy>
+          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CR13G06830</property>
+          <sequence>
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+              <domain confidence="1.9E-156" from="924" to="1295">IPR002932</domain>
+              <domain confidence="9.5E-23" from="1759" to="1856">IPR028261</domain>
+              <domain confidence="3.53E-89" from="1349" to="1619">IPR002489</domain>
+              <domain confidence="2.4E-221" from="1720" to="2206">IPR006005</domain>
+              <domain confidence="3.5E-136" from="60" to="434">IPR000583</domain>
+              <domain confidence="4.97E-34" from="1719" to="1878">IPR009051</domain>
+              <domain confidence="1.7E-105" from="569" to="856">IPR006982</domain>
+              <domain confidence="23.554" from="60" to="462">IPR017932</domain>
+              <domain confidence="4.3E-98" from="1357" to="1629">IPR002489</domain>
+              <domain confidence="2.2E-18" from="1869" to="2182">IPR023753</domain>
+              <domain confidence="4.7E-58" from="1383" to="1563">IPR002489</domain>
+              <domain confidence="8.4E-177" from="970" to="1324">IPR013785</domain>
+            </domain_architecture>
+          </sequence>
+        </clade>
+    </clade>
+    <clade>
+      <branch_length>0.9303199999999999</branch_length>
+      <confidence type="bootstrap">100.0</confidence>
+      <clade>
+        <branch_length>0.08639</branch_length>
+        <confidence type="bootstrap">98.0</confidence>
+        <clade>
+          <branch_length>0.04749</branch_length>
+          <confidence type="bootstrap">96.0</confidence>
+          <clade>
+            <branch_length>0.1075</branch_length>
+            <confidence type="bootstrap">100.0</confidence>
+            <clade>
+              <branch_length>0.08295</branch_length>
+              <confidence type="bootstrap">100.0</confidence>
+              <clade>
+                <name>ZM07G29290</name>
+                <branch_length>0.04665</branch_length>
+              <taxonomy>
+                    <code>zma</code>
+                  </taxonomy>
+                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ZM07G29290</property>
+                  <sequence>
+                    <domain_architecture length="1617">
+                      <domain confidence="2.2E-116" from="545" to="840">IPR006982</domain>
+                      <domain confidence="4.4E-101" from="536" to="887">IPR013785</domain>
+                      <domain confidence="1.3E-161" from="898" to="1282">IPR002932</domain>
+                      <domain confidence="7.1E-94" from="1348" to="1602">IPR002489</domain>
+                      <domain confidence="20.821" from="98" to="497">IPR017932</domain>
+                      <domain confidence="1.1E-65" from="1363" to="1555">IPR002489</domain>
+                      <domain confidence="1.44E-86" from="1336" to="1594">IPR002489</domain>
+                      <domain confidence="3.7E-166" from="926" to="1305">IPR013785</domain>
+                      <domain confidence="9.1E-133" from="98" to="469">IPR000583</domain>
+                    </domain_architecture>
+                  </sequence>
+                </clade>
+              <clade>
+                <name>OS07G46460</name>
+                <branch_length>0.03368</branch_length>
+              <taxonomy>
+                    <code>osa</code>
+                  </taxonomy>
+                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/OS07G46460</property>
+                  <sequence>
+                    <domain_architecture length="1616">
+                      <domain confidence="5.7E-134" from="97" to="468">IPR000583</domain>
+                      <domain confidence="1.44E-86" from="1334" to="1593">IPR002489</domain>
+                      <domain confidence="3.7E-167" from="924" to="1319">IPR013785</domain>
+                      <domain confidence="1.5E-93" from="1347" to="1601">IPR002489</domain>
+                      <domain confidence="1.5E-162" from="897" to="1281">IPR002932</domain>
+                      <domain confidence="2.2E-101" from="530" to="886">IPR013785</domain>
+                      <domain confidence="2.0E-64" from="1362" to="1554">IPR002489</domain>
+                      <domain confidence="20.22" from="97" to="496">IPR017932</domain>
+                      <domain confidence="2.2E-115" from="544" to="839">IPR006982</domain>
+                    </domain_architecture>
+                  </sequence>
+                </clade>
+            </clade>
+            <clade>
+              <branch_length>0.02626</branch_length>
+              <confidence type="bootstrap">97.0</confidence>
+              <clade>
+                <branch_length>0.01338</branch_length>
+                <confidence type="bootstrap">21.0</confidence>
+                <clade>
+                  <branch_length>0.00818</branch_length>
+                  <confidence type="bootstrap">69.0</confidence>
+                  <clade>
+                    <branch_length>0.02006</branch_length>
+                    <confidence type="bootstrap">99.0</confidence>
+                    <clade>
+                      <branch_length>0.05784</branch_length>
+                      <confidence type="bootstrap">100.0</confidence>
+                      <clade>
+                        <name>CM00011G07020</name>
+                        <branch_length>0.00793</branch_length>
+                      <taxonomy>
+                            <code>cme</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CM00011G07020</property>
+                          <sequence>
+                            <domain_architecture length="1491">
+                              <domain confidence="1.7E-114" from="421" to="716">IPR006982</domain>
+                              <domain confidence="7.5E-65" from="1240" to="1430">IPR002489</domain>
+                              <domain confidence="17.12" from="1" to="373">IPR017932</domain>
+                              <domain confidence="8.4E-122" from="1" to="345">IPR000583</domain>
+                              <domain confidence="8.2E-163" from="774" to="1158">IPR002932</domain>
+                              <domain confidence="1.44E-89" from="1210" to="1471">IPR002489</domain>
+                              <domain confidence="2.0E-100" from="411" to="763">IPR013785</domain>
+                              <domain confidence="6.4E-167" from="800" to="1198">IPR013785</domain>
+                              <domain confidence="1.7E-93" from="1224" to="1476">IPR002489</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                      <clade>
+                        <name>CL10G14240</name>
+                        <branch_length>0.01156</branch_length>
+                      <taxonomy>
+                            <code>cla</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CL10G14240</property>
+                          <sequence>
+                            <domain_architecture length="1614">
+                              <domain confidence="3.1E-100" from="549" to="900">IPR013785</domain>
+                              <domain confidence="1.5E-166" from="937" to="1334">IPR013785</domain>
+                              <domain confidence="3.1E-135" from="111" to="482">IPR000583</domain>
+                              <domain confidence="5.2E-65" from="1376" to="1567">IPR002489</domain>
+                              <domain confidence="1.8E-114" from="558" to="853">IPR006982</domain>
+                              <domain confidence="8.6E-163" from="911" to="1295">IPR002932</domain>
+                              <domain confidence="3.0E-85" from="1360" to="1599">IPR002489</domain>
+                              <domain confidence="2.22E-83" from="1347" to="1594">IPR002489</domain>
+                              <domain confidence="20.259" from="111" to="510">IPR017932</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                    </clade>
+                    <clade>
+                      <branch_length>0.00878</branch_length>
+                      <confidence type="bootstrap">93.0</confidence>
+                      <clade>
+                        <branch_length>0.00734</branch_length>
+                        <confidence type="bootstrap">92.0</confidence>
+                        <clade>
+                          <branch_length>0.03908</branch_length>
+                          <confidence type="bootstrap">100.0</confidence>
+                          <clade>
+                            <branch_length>0.0134</branch_length>
+                            <confidence type="bootstrap">99.0</confidence>
+                            <clade>
+                              <name>PPE_007G05330</name>
+                              <branch_length>0.01585</branch_length>
+                            <taxonomy>
+                                  <code>ppe</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PPE_007G05330</property>
+                                <sequence>
+                                  <domain_architecture length="1626">
+                                    <domain confidence="1.6E-63" from="1373" to="1564">IPR002489</domain>
+                                    <domain confidence="6.3E-168" from="928" to="1322">IPR013785</domain>
+                                    <domain confidence="2.3E-133" from="108" to="479">IPR000583</domain>
+                                    <domain confidence="2.5E-116" from="555" to="850">IPR006982</domain>
+                                    <domain confidence="1.8E-92" from="1358" to="1614">IPR002489</domain>
+                                    <domain confidence="2.6E-99" from="549" to="897">IPR013785</domain>
+                                    <domain confidence="5.7E-162" from="908" to="1292">IPR002932</domain>
+                                    <domain confidence="19.658" from="108" to="507">IPR017932</domain>
+                                    <domain confidence="2.62E-87" from="1344" to="1605">IPR002489</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                            <clade>
+                              <name>MD00G230080</name>
+                              <branch_length>0.01737</branch_length>
+                            <taxonomy>
+                                  <code>mdo</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/MD00G230080</property>
+                                <sequence>
+                                  <domain_architecture length="1475">
+                                    <domain confidence="16.538" from="1" to="373">IPR017932</domain>
+                                    <domain confidence="4.7E-122" from="1" to="345">IPR000583</domain>
+                                    <domain confidence="1.2E-98" from="413" to="763">IPR013785</domain>
+                                    <domain confidence="1.2E-166" from="795" to="1187">IPR013785</domain>
+                                    <domain confidence="4.6E-62" from="1239" to="1430">IPR002489</domain>
+                                    <domain confidence="9.68E-86" from="1210" to="1471">IPR002489</domain>
+                                    <domain confidence="2.8E-116" from="421" to="716">IPR006982</domain>
+                                    <domain confidence="1.3E-162" from="774" to="1158">IPR002932</domain>
+                                    <domain confidence="1.8E-90" from="1223" to="1473">IPR002489</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                          </clade>
+                          <clade>
+                            <name>FV6G33050</name>
+                            <branch_length>0.04808</branch_length>
+                          <taxonomy>
+                                <code>fve</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/FV6G33050</property>
+                              <sequence>
+                                <domain_architecture length="2586">
+                                  <domain confidence="5.6E-115" from="1496" to="1791">IPR006982</domain>
+                                  <domain confidence="1.1E-43" from="642" to="740">IPR027483</domain>
+                                  <domain confidence="1.8E-4" from="211" to="232">IPR003409</domain>
+                                  <domain confidence="1.1E-43" from="783" to="854">IPR027483</domain>
+                                  <domain confidence="1.6E-53" from="500" to="640">IPR027484</domain>
+                                  <domain confidence="2.4E-5" from="121" to="143">IPR003409</domain>
+                                  <domain confidence="3.8E-4" from="213" to="234">IPR003409</domain>
+                                  <domain confidence="5.8E-4" from="188" to="209">IPR003409</domain>
+                                  <domain confidence="2.7E-4" from="98" to="119">IPR003409</domain>
+                                  <domain confidence="8.5E-87" from="2318" to="2566">IPR002489</domain>
+                                  <domain confidence="5.4E-4" from="144" to="165">IPR003409</domain>
+                                  <domain confidence="0.033" from="96" to="117">IPR003409</domain>
+                                  <domain confidence="2.8E-4" from="165" to="186">IPR003409</domain>
+                                  <domain confidence="18.069" from="992" to="1389">IPR017932</domain>
+                                  <domain confidence="2.1E-162" from="1849" to="2233">IPR002932</domain>
+                                  <domain confidence="1.6E-4" from="75" to="97">IPR003409</domain>
+                                  <domain confidence="1.6E-174" from="496" to="857">IPR016034</domain>
+                                  <domain confidence="6.3E-92" from="2319" to="2578">IPR002489</domain>
+                                  <domain confidence="2.9E-4" from="142" to="163">IPR003409</domain>
+                                  <domain confidence="9.0E-5" from="190" to="212">IPR003409</domain>
+                                  <domain confidence="8.0E-134" from="992" to="1363">IPR000583</domain>
+                                  <domain confidence="9.3E-167" from="1870" to="2260">IPR013785</domain>
+                                  <domain confidence="2.3E-100" from="1488" to="1838">IPR013785</domain>
+                                  <domain confidence="1.4E-6" from="167" to="188">IPR003409</domain>
+                                  <domain confidence="1.1E-63" from="2334" to="2525">IPR002489</domain>
+                                  <domain confidence="65.115" from="465" to="856">IPR002498</domain>
+                                  <domain confidence="0.0015" from="73" to="94">IPR003409</domain>
+                                  <domain confidence="6.0E-4" from="119" to="140">IPR003409</domain>
+                                  <domain confidence="1.1E-82" from="553" to="853">IPR002498</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                        </clade>
+                        <clade>
+                          <branch_length>0.00687</branch_length>
+                          <confidence type="bootstrap">88.0</confidence>
+                          <clade>
+                            <branch_length>0.00335</branch_length>
+                            <confidence type="bootstrap">14.0</confidence>
+                            <clade>
+                              <branch_length>0.00852</branch_length>
+                              <confidence type="bootstrap">30.0</confidence>
+                              <clade>
+                                <name>VV08G10190</name>
+                                <branch_length>0.0541</branch_length>
+                              <taxonomy>
+                                    <code>vvi</code>
+                                  </taxonomy>
+                                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/VV08G10190</property>
+                                  <sequence>
+                                    <domain_architecture length="1657">
+                                      <domain confidence="4.71E-87" from="1377" to="1637">IPR002489</domain>
+                                      <domain confidence="1.6E-132" from="140" to="511">IPR000583</domain>
+                                      <domain confidence="1.7E-93" from="1391" to="1648">IPR002489</domain>
+                                      <domain confidence="6.4E-114" from="587" to="882">IPR006982</domain>
+                                      <domain confidence="1.9E-161" from="940" to="1324">IPR002932</domain>
+                                      <domain confidence="4.7E-100" from="579" to="929">IPR013785</domain>
+                                      <domain confidence="4.7E-168" from="960" to="1357">IPR013785</domain>
+                                      <domain confidence="1.1E-62" from="1405" to="1596">IPR002489</domain>
+                                      <domain confidence="20.279" from="140" to="539">IPR017932</domain>
+                                    </domain_architecture>
+                                  </sequence>
+                                </clade>
+                              <clade>
+                                <name>EG0001G18800</name>
+                                <branch_length>0.07873</branch_length>
+                              <taxonomy>
+                                    <code>egr</code>
+                                  </taxonomy>
+                                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/EG0001G18800</property>
+                                  <sequence>
+                                    <domain_architecture length="1619">
+                                      <domain confidence="2.6E-92" from="1352" to="1608">IPR002489</domain>
+                                      <domain confidence="3.0E-115" from="549" to="844">IPR006982</domain>
+                                      <domain confidence="2.8E-62" from="1367" to="1558">IPR002489</domain>
+                                      <domain confidence="1.1E-160" from="902" to="1286">IPR002932</domain>
+                                      <domain confidence="3.2E-101" from="534" to="891">IPR013785</domain>
+                                      <domain confidence="12.488" from="125" to="501">IPR017932</domain>
+                                      <domain confidence="4.8E-118" from="125" to="468">IPR000583</domain>
+                                      <domain confidence="2.4E-168" from="913" to="1319">IPR013785</domain>
+                                      <domain confidence="6.02E-86" from="1342" to="1599">IPR002489</domain>
+                                    </domain_architecture>
+                                  </sequence>
+                                </clade>
+                            </clade>
+                            <clade>
+                              <name>CP00005G01670</name>
+                              <branch_length>0.0791</branch_length>
+                            <taxonomy>
+                                  <code>cpa</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CP00005G01670</property>
+                                <sequence>
+                                  <domain_architecture length="1566">
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+                                    <domain confidence="2.6E-167" from="870" to="1258">IPR013785</domain>
+                                    <domain confidence="3.2E-92" from="1299" to="1555">IPR002489</domain>
+                                    <domain confidence="4.2E-82" from="553" to="791">IPR006982</domain>
+                                    <domain confidence="20.298" from="104" to="503">IPR017932</domain>
+                                    <domain confidence="9.0E-74" from="552" to="838">IPR013785</domain>
+                                    <domain confidence="2.8E-63" from="1314" to="1505">IPR002489</domain>
+                                    <domain confidence="8.2E-163" from="849" to="1233">IPR002932</domain>
+                                    <domain confidence="3.5E-133" from="104" to="475">IPR000583</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                          </clade>
+                          <clade>
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+                            <confidence type="bootstrap">55.0</confidence>
+                            <clade>
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+                              <confidence type="bootstrap">95.0</confidence>
+                              <clade>
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+                                <confidence type="bootstrap">100.0</confidence>
+                                <clade>
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+                                  <branch_length>0.0295</branch_length>
+                                <taxonomy>
+                                      <code>tca</code>
+                                    </taxonomy>
+                                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/TC0005G13670</property>
+                                    <sequence>
+                                      <domain_architecture length="1625">
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+                                        <domain confidence="3.8E-62" from="1373" to="1560">IPR002489</domain>
+                                        <domain confidence="2.9E-133" from="108" to="479">IPR000583</domain>
+                                        <domain confidence="1.0E-114" from="555" to="850">IPR006982</domain>
+                                        <domain confidence="1.1E-168" from="933" to="1328">IPR013785</domain>
+                                        <domain confidence="1.3E-99" from="546" to="897">IPR013785</domain>
+                                        <domain confidence="19.91" from="108" to="507">IPR017932</domain>
+                                        <domain confidence="8.0E-163" from="908" to="1292">IPR002932</domain>
+                                        <domain confidence="1.83E-87" from="1344" to="1605">IPR002489</domain>
+                                      </domain_architecture>
+                                    </sequence>
+                                  </clade>
+                                <clade>
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+                                  <branch_length>0.0439</branch_length>
+                                <taxonomy>
+                                      <code>gra</code>
+                                    </taxonomy>
+                                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GR02G22660</property>
+                                    <sequence>
+                                      <domain_architecture length="1690">
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+                                        <domain confidence="5.89E-88" from="1409" to="1670">IPR002489</domain>
+                                        <domain confidence="2.1E-162" from="973" to="1357">IPR002932</domain>
+                                        <domain confidence="2.1E-168" from="993" to="1386">IPR013785</domain>
+                                        <domain confidence="1.3E-93" from="1423" to="1680">IPR002489</domain>
+                                        <domain confidence="4.1E-99" from="612" to="962">IPR013785</domain>
+                                        <domain confidence="4.7E-132" from="173" to="544">IPR000583</domain>
+                                        <domain confidence="3.7E-63" from="1438" to="1629">IPR002489</domain>
+                                        <domain confidence="18.767" from="173" to="572">IPR017932</domain>
+                                      </domain_architecture>
+                                    </sequence>
+                                  </clade>
+                              </clade>
+                              <clade>
+                                <name>CS00537G00010</name>
+                                <branch_length>0.05842</branch_length>
+                              <taxonomy>
+                                    <code>csi</code>
+                                  </taxonomy>
+                                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CS00537G00010</property>
+                                  <sequence>
+                                    <domain_architecture length="1483">
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+                                      <domain confidence="2.7E-131" from="104" to="475">IPR000583</domain>
+                                      <domain confidence="1.3E-141" from="904" to="1271">IPR002932</domain>
+                                      <domain confidence="4.71E-48" from="1324" to="1482">IPR002489</domain>
+                                      <domain confidence="8.7E-115" from="551" to="846">IPR006982</domain>
+                                      <domain confidence="8.8E-99" from="542" to="893">IPR013785</domain>
+                                      <domain confidence="20.453" from="104" to="503">IPR017932</domain>
+                                      <domain confidence="5.9E-50" from="1336" to="1482">IPR002489</domain>
+                                      <domain confidence="1.6E-148" from="921" to="1304">IPR013785</domain>
+                                    </domain_architecture>
+                                  </sequence>
+                                </clade>
+                            </clade>
+                            <clade>
+                              <branch_length>0.01558</branch_length>
+                              <confidence type="bootstrap">99.0</confidence>
+                              <clade>
+                                <branch_length>0.02832</branch_length>
+                                <confidence type="bootstrap">100.0</confidence>
+                                <clade>
+                                  <name>PT16G03690</name>
+                                  <branch_length>0.02457</branch_length>
+                                <taxonomy>
+                                      <code>ptr</code>
+                                    </taxonomy>
+                                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PT16G03690</property>
+                                    <sequence>
+                                      <domain_architecture length="1621">
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+                                        <domain confidence="1.9E-114" from="551" to="845">IPR006982</domain>
+                                        <domain confidence="8.0E-134" from="103" to="474">IPR000583</domain>
+                                        <domain confidence="2.2E-162" from="903" to="1287">IPR002932</domain>
+                                        <domain confidence="19.697" from="103" to="502">IPR017932</domain>
+                                        <domain confidence="4.0E-168" from="919" to="1320">IPR013785</domain>
+                                        <domain confidence="1.5E-98" from="541" to="892">IPR013785</domain>
+                                        <domain confidence="5.5E-64" from="1368" to="1559">IPR002489</domain>
+                                        <domain confidence="2.22E-87" from="1343" to="1600">IPR002489</domain>
+                                      </domain_architecture>
+                                    </sequence>
+                                  </clade>
+                                <clade>
+                                  <name>PT06G03840</name>
+                                  <branch_length>0.02464</branch_length>
+                                <taxonomy>
+                                      <code>ptr</code>
+                                    </taxonomy>
+                                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PT06G03840</property>
+                                    <sequence>
+                                      <domain_architecture length="1492">
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+                                        <domain confidence="3.3E-93" from="1224" to="1480">IPR002489</domain>
+                                        <domain confidence="1.0E-99" from="410" to="763">IPR013785</domain>
+                                        <domain confidence="1.3E-63" from="1239" to="1430">IPR002489</domain>
+                                        <domain confidence="3.7E-168" from="790" to="1190">IPR013785</domain>
+                                        <domain confidence="7.5E-162" from="774" to="1158">IPR002932</domain>
+                                        <domain confidence="1.96E-87" from="1212" to="1471">IPR002489</domain>
+                                        <domain confidence="16.364" from="1" to="373">IPR017932</domain>
+                                        <domain confidence="1.0E-122" from="1" to="345">IPR000583</domain>
+                                      </domain_architecture>
+                                    </sequence>
+                                  </clade>
+                              </clade>
+                              <clade>
+                                <branch_length>0.015</branch_length>
+                                <confidence type="bootstrap">99.0</confidence>
+                                <clade>
+                                  <name>ME08100G00050</name>
+                                  <branch_length>0.03509</branch_length>
+                                <taxonomy>
+                                      <code>mes</code>
+                                    </taxonomy>
+                                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ME08100G00050</property>
+                                    <sequence>
+                                      <domain_architecture length="1491">
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+                                        <domain confidence="1.1E-162" from="774" to="1158">IPR002932</domain>
+                                        <domain confidence="8.3E-93" from="1224" to="1480">IPR002489</domain>
+                                        <domain confidence="3.8E-101" from="408" to="763">IPR013785</domain>
+                                        <domain confidence="2.3E-166" from="799" to="1194">IPR013785</domain>
+                                        <domain confidence="1.0E-122" from="1" to="345">IPR000583</domain>
+                                        <domain confidence="2.5E-63" from="1239" to="1430">IPR002489</domain>
+                                        <domain confidence="1.57E-88" from="1209" to="1471">IPR002489</domain>
+                                        <domain confidence="17.275" from="1" to="373">IPR017932</domain>
+                                      </domain_architecture>
+                                    </sequence>
+                                  </clade>
+                                <clade>
+                                  <name>RC29612G00060</name>
+                                  <branch_length>0.04136</branch_length>
+                                <taxonomy>
+                                      <code>rco</code>
+                                    </taxonomy>
+                                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/RC29612G00060</property>
+                                    <sequence>
+                                      <domain_architecture length="1633">
+                                        <domain confidence="4.5E-168" from="937" to="1334">IPR013785</domain>
+                                        <domain confidence="8.6E-103" from="551" to="906">IPR013785</domain>
+                                        <domain confidence="5.62E-88" from="1353" to="1614">IPR002489</domain>
+                                        <domain confidence="4.7E-116" from="564" to="859">IPR006982</domain>
+                                        <domain confidence="1.2E-92" from="1367" to="1622">IPR002489</domain>
+                                        <domain confidence="20.065" from="117" to="516">IPR017932</domain>
+                                        <domain confidence="6.3E-162" from="917" to="1301">IPR002932</domain>
+                                        <domain confidence="2.2E-135" from="117" to="488">IPR000583</domain>
+                                        <domain confidence="4.3E-63" from="1382" to="1573">IPR002489</domain>
+                                      </domain_architecture>
+                                    </sequence>
+                                  </clade>
+                              </clade>
+                            </clade>
+                          </clade>
+                        </clade>
+                      </clade>
+                      <clade>
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+                        <confidence type="bootstrap">78.0</confidence>
+                        <clade>
+                          <branch_length>0.01216</branch_length>
+                          <confidence type="bootstrap">80.0</confidence>
+                          <clade>
+                            <branch_length>0.0772</branch_length>
+                            <confidence type="bootstrap">100.0</confidence>
+                            <clade>
+                              <name>SL03G063560</name>
+                              <branch_length>0.00595</branch_length>
+                            <taxonomy>
+                                  <code>sly</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/SL03G063560</property>
+                                <sequence>
+                                  <domain_architecture length="1622">
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+                                    <domain confidence="19.717" from="99" to="498">IPR017932</domain>
+                                    <domain confidence="1.12E-88" from="1334" to="1596">IPR002489</domain>
+                                    <domain confidence="8.9E-95" from="1349" to="1604">IPR002489</domain>
+                                    <domain confidence="5.0E-135" from="99" to="470">IPR000583</domain>
+                                    <domain confidence="4.1E-163" from="899" to="1283">IPR002932</domain>
+                                    <domain confidence="3.1E-169" from="924" to="1316">IPR013785</domain>
+                                    <domain confidence="8.0E-65" from="1364" to="1556">IPR002489</domain>
+                                    <domain confidence="8.0E-102" from="536" to="889">IPR013785</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                            <clade>
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+                              <branch_length>0.0061</branch_length>
+                            <taxonomy>
+                                  <code>stu</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ST03G019370</property>
+                                <sequence>
+                                  <domain_architecture length="1622">
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+                                    <domain confidence="19.639" from="99" to="498">IPR017932</domain>
+                                    <domain confidence="1.12E-88" from="1334" to="1596">IPR002489</domain>
+                                    <domain confidence="4.5E-169" from="924" to="1316">IPR013785</domain>
+                                    <domain confidence="2.9E-163" from="899" to="1283">IPR002932</domain>
+                                    <domain confidence="3.4E-100" from="537" to="889">IPR013785</domain>
+                                    <domain confidence="8.9E-95" from="1349" to="1604">IPR002489</domain>
+                                    <domain confidence="1.1E-114" from="546" to="841">IPR006982</domain>
+                                    <domain confidence="6.3E-135" from="99" to="470">IPR000583</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                          </clade>
+                          <clade>
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+                            <branch_length>0.10731</branch_length>
+                          <taxonomy>
+                                <code>atr</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ATR_00063G00700</property>
+                              <sequence>
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+                                  <domain confidence="3.0E-167" from="934" to="1331">IPR013785</domain>
+                                  <domain confidence="6.3E-112" from="561" to="856">IPR006982</domain>
+                                  <domain confidence="8.1E-99" from="553" to="903">IPR013785</domain>
+                                  <domain confidence="1.5E-92" from="1364" to="1618">IPR002489</domain>
+                                  <domain confidence="9.0E-133" from="114" to="485">IPR000583</domain>
+                                  <domain confidence="3.27E-87" from="1350" to="1611">IPR002489</domain>
+                                  <domain confidence="8.9E-65" from="1379" to="1571">IPR002489</domain>
+                                  <domain confidence="20.24" from="114" to="513">IPR017932</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                        </clade>
+                        <clade>
+                          <branch_length>0.04502</branch_length>
+                          <confidence type="bootstrap">100.0</confidence>
+                          <clade>
+                            <branch_length>0.0206</branch_length>
+                            <confidence type="bootstrap">100.0</confidence>
+                            <clade>
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+                              <branch_length>0.00733</branch_length>
+                            <taxonomy>
+                                  <code>gma</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GM03G28410</property>
+                                <sequence>
+                                  <domain_architecture length="1627">
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+                                    <domain confidence="20.724" from="105" to="504">IPR017932</domain>
+                                    <domain confidence="1.7E-102" from="544" to="894">IPR013785</domain>
+                                    <domain confidence="1.0E-114" from="552" to="847">IPR006982</domain>
+                                    <domain confidence="1.12E-88" from="1339" to="1602">IPR002489</domain>
+                                    <domain confidence="1.8E-64" from="1370" to="1561">IPR002489</domain>
+                                    <domain confidence="4.3E-94" from="1355" to="1614">IPR002489</domain>
+                                    <domain confidence="8.2E-168" from="921" to="1327">IPR013785</domain>
+                                    <domain confidence="1.1E-162" from="905" to="1289">IPR002932</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                            <clade>
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+                              <branch_length>0.01655</branch_length>
+                            <taxonomy>
+                                  <code>gma</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GM19G31120</property>
+                                <sequence>
+                                  <domain_architecture length="1582">
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+                                    <domain confidence="7.9E-63" from="1372" to="1563">IPR002489</domain>
+                                    <domain confidence="20.608" from="107" to="506">IPR017932</domain>
+                                    <domain confidence="1.2E-162" from="907" to="1291">IPR002932</domain>
+                                    <domain confidence="1.1E-134" from="107" to="478">IPR000583</domain>
+                                    <domain confidence="8.11E-78" from="1341" to="1578">IPR002489</domain>
+                                    <domain confidence="1.0E-80" from="1357" to="1577">IPR002489</domain>
+                                    <domain confidence="5.3E-116" from="554" to="849">IPR006982</domain>
+                                    <domain confidence="3.7E-103" from="547" to="896">IPR013785</domain>
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+                                </sequence>
+                              </clade>
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+                          <clade>
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+                            <branch_length>0.04336</branch_length>
+                          <taxonomy>
+                                <code>mtr</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/MT7G089970</property>
+                              <sequence>
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+                                  <domain confidence="8.0E-62" from="1361" to="1553">IPR002489</domain>
+                                  <domain confidence="9.94E-88" from="1330" to="1593">IPR002489</domain>
+                                  <domain confidence="7.2E-168" from="912" to="1313">IPR013785</domain>
+                                  <domain confidence="2.3E-115" from="543" to="838">IPR006982</domain>
+                                  <domain confidence="1.1E-133" from="96" to="467">IPR000583</domain>
+                                  <domain confidence="9.2E-93" from="1346" to="1599">IPR002489</domain>
+                                  <domain confidence="20.53" from="96" to="495">IPR017932</domain>
+                                  <domain confidence="3.6E-102" from="530" to="885">IPR013785</domain>
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+                      </clade>
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+                    <confidence type="bootstrap">100.0</confidence>
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+                      <confidence type="bootstrap">97.0</confidence>
+                      <clade>
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+                        <confidence type="bootstrap">90.0</confidence>
+                        <clade>
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+                          <branch_length>0.00955</branch_length>
+                        <taxonomy>
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+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/AT2G41220</property>
+                            <sequence>
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+                                <domain confidence="6.3E-100" from="545" to="897">IPR013785</domain>
+                                <domain confidence="1.8E-167" from="935" to="1329">IPR013785</domain>
+                                <domain confidence="1.8E-93" from="1357" to="1608">IPR002489</domain>
+                                <domain confidence="5.5E-114" from="555" to="850">IPR006982</domain>
+                                <domain confidence="8.3E-63" from="1371" to="1564">IPR002489</domain>
+                                <domain confidence="1.5E-161" from="908" to="1292">IPR002932</domain>
+                                <domain confidence="4.5E-135" from="108" to="479">IPR000583</domain>
+                                <domain confidence="1.57E-88" from="1342" to="1604">IPR002489</domain>
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+                          <branch_length>0.00563</branch_length>
+                        <taxonomy>
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+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/AL4G28170</property>
+                            <sequence>
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+                                <domain confidence="1.2E-161" from="908" to="1292">IPR002932</domain>
+                                <domain confidence="3.6E-115" from="555" to="850">IPR006982</domain>
+                                <domain confidence="1.2E-93" from="1357" to="1608">IPR002489</domain>
+                                <domain confidence="20.55" from="108" to="507">IPR017932</domain>
+                                <domain confidence="1.2E-135" from="108" to="479">IPR000583</domain>
+                                <domain confidence="4.8E-63" from="1371" to="1564">IPR002489</domain>
+                                <domain confidence="1.5E-167" from="935" to="1329">IPR013785</domain>
+                                <domain confidence="6.9E-101" from="545" to="897">IPR013785</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                      </clade>
+                      <clade>
+                        <name>CRU_004G22730</name>
+                        <branch_length>0.01323</branch_length>
+                      <taxonomy>
+                            <code>cru</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CRU_004G22730</property>
+                          <sequence>
+                            <domain_architecture length="1630">
+                              <domain confidence="9.3E-162" from="908" to="1292">IPR002932</domain>
+                              <domain confidence="1.3E-116" from="556" to="850">IPR006982</domain>
+                              <domain confidence="3.4E-102" from="545" to="897">IPR013785</domain>
+                              <domain confidence="1.11E-87" from="1342" to="1604">IPR002489</domain>
+                              <domain confidence="1.8E-135" from="108" to="479">IPR000583</domain>
+                              <domain confidence="5.0E-64" from="1372" to="1564">IPR002489</domain>
+                              <domain confidence="5.8E-92" from="1357" to="1608">IPR002489</domain>
+                              <domain confidence="8.2E-168" from="935" to="1329">IPR013785</domain>
+                              <domain confidence="20.666" from="108" to="507">IPR017932</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                    </clade>
+                    <clade>
+                      <branch_length>0.00815</branch_length>
+                      <confidence type="bootstrap">85.0</confidence>
+                      <clade>
+                        <branch_length>0.00334</branch_length>
+                        <confidence type="bootstrap">84.0</confidence>
+                        <clade>
+                          <name>BR03G20680</name>
+                          <branch_length>0.01831</branch_length>
+                        <taxonomy>
+                              <code>bra</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/BR03G20680</property>
+                            <sequence>
+                              <domain_architecture length="1587">
+                                <domain confidence="8.89E-89" from="1300" to="1562">IPR002489</domain>
+                                <domain confidence="2.7E-167" from="893" to="1287">IPR013785</domain>
+                                <domain confidence="8.6E-113" from="96" to="464">IPR000583</domain>
+                                <domain confidence="2.8E-161" from="866" to="1250">IPR002932</domain>
+                                <domain confidence="1.8E-93" from="555" to="808">IPR006982</domain>
+                                <domain confidence="5.0E-63" from="1329" to="1522">IPR002489</domain>
+                                <domain confidence="2.6E-87" from="528" to="855">IPR013785</domain>
+                                <domain confidence="19.717" from="96" to="492">IPR017932</domain>
+                                <domain confidence="2.1E-93" from="1315" to="1569">IPR002489</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                        <clade>
+                          <name>BR04G24660</name>
+                          <branch_length>0.01718</branch_length>
+                        <taxonomy>
+                              <code>bra</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/BR04G24660</property>
+                            <sequence>
+                              <domain_architecture length="1627">
+                                <domain confidence="9.55E-89" from="1340" to="1602">IPR002489</domain>
+                                <domain confidence="9.8E-135" from="106" to="477">IPR000583</domain>
+                                <domain confidence="3.0E-168" from="933" to="1327">IPR013785</domain>
+                                <domain confidence="1.3E-62" from="1369" to="1559">IPR002489</domain>
+                                <domain confidence="1.3E-102" from="543" to="895">IPR013785</domain>
+                                <domain confidence="1.1E-92" from="1355" to="1607">IPR002489</domain>
+                                <domain confidence="20.453" from="106" to="505">IPR017932</domain>
+                                <domain confidence="9.1E-162" from="906" to="1290">IPR002932</domain>
+                                <domain confidence="1.3E-115" from="553" to="848">IPR006982</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                      </clade>
+                      <clade>
+                        <name>TP4G23520</name>
+                        <branch_length>0.01211</branch_length>
+                      <taxonomy>
+                            <code>tpa</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/TP4G23520</property>
+                          <sequence>
+                            <domain_architecture length="1630">
+                              <domain confidence="1.6E-161" from="908" to="1292">IPR002932</domain>
+                              <domain confidence="7.2E-63" from="1371" to="1564">IPR002489</domain>
+                              <domain confidence="4.6E-102" from="545" to="897">IPR013785</domain>
+                              <domain confidence="3.4E-115" from="555" to="850">IPR006982</domain>
+                              <domain confidence="20.453" from="108" to="507">IPR017932</domain>
+                              <domain confidence="3.0E-93" from="1357" to="1609">IPR002489</domain>
+                              <domain confidence="3.8E-135" from="108" to="479">IPR000583</domain>
+                              <domain confidence="1.2E-167" from="935" to="1329">IPR013785</domain>
+                              <domain confidence="1.44E-88" from="1342" to="1604">IPR002489</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                    </clade>
+                  </clade>
+                </clade>
+                <clade>
+                  <name>BV3G12750</name>
+                  <branch_length>0.08576</branch_length>
+                <taxonomy>
+                      <code>bvu</code>
+                    </taxonomy>
+                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/BV3G12750</property>
+                    <sequence>
+                      <domain_architecture length="1616">
+                        <domain confidence="3.4E-90" from="1335" to="1596">IPR002489</domain>
+                        <domain confidence="1.2E-94" from="1350" to="1609">IPR002489</domain>
+                        <domain confidence="1.3E-167" from="926" to="1315">IPR013785</domain>
+                        <domain confidence="5.5E-163" from="899" to="1283">IPR002932</domain>
+                        <domain confidence="3.1E-133" from="99" to="470">IPR000583</domain>
+                        <domain confidence="2.7E-116" from="546" to="841">IPR006982</domain>
+                        <domain confidence="19.755" from="99" to="498">IPR017932</domain>
+                        <domain confidence="3.0E-64" from="1364" to="1555">IPR002489</domain>
+                        <domain confidence="4.4E-100" from="539" to="888">IPR013785</domain>
+                      </domain_architecture>
+                    </sequence>
+                  </clade>
+              </clade>
+              <clade>
+                <branch_length>0.09245</branch_length>
+                <confidence type="bootstrap">100.0</confidence>
+                <clade>
+                  <branch_length>0.00885</branch_length>
+                  <confidence type="bootstrap">58.0</confidence>
+                  <clade>
+                    <branch_length>0.01132</branch_length>
+                    <confidence type="bootstrap">99.0</confidence>
+                    <clade>
+                      <branch_length>0.00272</branch_length>
+                      <confidence type="bootstrap">83.0</confidence>
+                      <clade>
+                        <name>AL6G03480</name>
+                        <branch_length>0.01513</branch_length>
+                      <taxonomy>
+                            <code>aly</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/AL6G03480</property>
+                          <sequence>
+                            <domain_architecture length="1607">
+                              <domain confidence="8.0E-63" from="1355" to="1547">IPR002489</domain>
+                              <domain confidence="7.1E-51" from="540" to="741">IPR013785</domain>
+                              <domain confidence="7.59E-87" from="1328" to="1587">IPR002489</domain>
+                              <domain confidence="4.5E-27" from="755" to="879">IPR013785</domain>
+                              <domain confidence="4.2E-92" from="1342" to="1592">IPR002489</domain>
+                              <domain confidence="19.852" from="105" to="504">IPR017932</domain>
+                              <domain confidence="4.9E-167" from="916" to="1308">IPR013785</domain>
+                              <domain confidence="1.8E-134" from="105" to="476">IPR000583</domain>
+                              <domain confidence="5.7E-92" from="553" to="832">IPR006982</domain>
+                              <domain confidence="7.0E-164" from="890" to="1274">IPR002932</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                      <clade>
+                        <name>AT5G04140</name>
+                        <branch_length>0.01881</branch_length>
+                      <taxonomy>
+                            <code>ath</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/AT5G04140</property>
+                          <sequence>
+                            <domain_architecture length="1649">
+                              <domain confidence="3.1E-62" from="1397" to="1589">IPR002489</domain>
+                              <domain confidence="1.0E-163" from="932" to="1317">IPR002932</domain>
+                              <domain confidence="3.7E-115" from="580" to="874">IPR006982</domain>
+                              <domain confidence="2.1E-92" from="1384" to="1634">IPR002489</domain>
+                              <domain confidence="1.6E-166" from="958" to="1350">IPR013785</domain>
+                              <domain confidence="9.4E-134" from="132" to="503">IPR000583</domain>
+                              <domain confidence="1.2E-99" from="567" to="921">IPR013785</domain>
+                              <domain confidence="3.79E-87" from="1370" to="1629">IPR002489</domain>
+                              <domain confidence="19.91" from="132" to="531">IPR017932</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                    </clade>
+                    <clade>
+                      <name>CRU_006G03010</name>
+                      <branch_length>0.01351</branch_length>
+                    <taxonomy>
+                          <code>cru</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CRU_006G03010</property>
+                        <sequence>
+                          <domain_architecture length="1722">
+                            <domain confidence="1.8E-167" from="1031" to="1416">IPR013785</domain>
+                            <domain confidence="1.3E-62" from="1470" to="1662">IPR002489</domain>
+                            <domain confidence="5.6E-135" from="205" to="576">IPR000583</domain>
+                            <domain confidence="2.5E-116" from="653" to="947">IPR006982</domain>
+                            <domain confidence="2.4E-164" from="1005" to="1390">IPR002932</domain>
+                            <domain confidence="9.02E-87" from="1443" to="1702">IPR002489</domain>
+                            <domain confidence="19.329" from="205" to="604">IPR017932</domain>
+                            <domain confidence="2.6E-92" from="1457" to="1707">IPR002489</domain>
+                            <domain confidence="4.7E-101" from="640" to="994">IPR013785</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                  </clade>
+                  <clade>
+                    <name>TP6G38610</name>
+                    <branch_length>0.01709</branch_length>
+                  <taxonomy>
+                        <code>tpa</code>
+                      </taxonomy>
+                      <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/TP6G38610</property>
+                      <sequence>
+                        <domain_architecture length="1624">
+                          <domain confidence="5.7E-62" from="1372" to="1563">IPR002489</domain>
+                          <domain confidence="19.697" from="107" to="506">IPR017932</domain>
+                          <domain confidence="4.5E-99" from="542" to="896">IPR013785</domain>
+                          <domain confidence="1.7E-113" from="555" to="849">IPR006982</domain>
+                          <domain confidence="8.6E-164" from="907" to="1292">IPR002932</domain>
+                          <domain confidence="1.44E-87" from="1343" to="1604">IPR002489</domain>
+                          <domain confidence="9.1E-135" from="107" to="478">IPR000583</domain>
+                          <domain confidence="2.8E-93" from="1358" to="1609">IPR002489</domain>
+                          <domain confidence="1.3E-166" from="933" to="1323">IPR013785</domain>
+                        </domain_architecture>
+                      </sequence>
+                    </clade>
+                </clade>
+                <clade>
+                  <name>BR10G27480</name>
+                  <branch_length>0.01108</branch_length>
+                <taxonomy>
+                      <code>bra</code>
+                    </taxonomy>
+                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/BR10G27480</property>
+                    <sequence>
+                      <domain_architecture length="1621">
+                        <domain confidence="9.3E-100" from="539" to="893">IPR013785</domain>
+                        <domain confidence="5.7E-135" from="104" to="475">IPR000583</domain>
+                        <domain confidence="6.7E-167" from="930" to="1318">IPR013785</domain>
+                        <domain confidence="3.1E-93" from="1354" to="1606">IPR002489</domain>
+                        <domain confidence="1.4E-61" from="1369" to="1561">IPR002489</domain>
+                        <domain confidence="9.7E-164" from="904" to="1288">IPR002932</domain>
+                        <domain confidence="5.6E-114" from="552" to="846">IPR006982</domain>
+                        <domain confidence="1.57E-86" from="1341" to="1601">IPR002489</domain>
+                        <domain confidence="19.31" from="104" to="503">IPR017932</domain>
+                      </domain_architecture>
+                    </sequence>
+                  </clade>
+              </clade>
+            </clade>
+          </clade>
+          <clade>
+            <name>PP00042G01290</name>
+            <branch_length>0.19366</branch_length>
+          <taxonomy>
+                <code>ppa</code>
+              </taxonomy>
+              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PP00042G01290</property>
+              <sequence>
+                <domain_architecture length="1634">
+                  <domain confidence="2.7E-136" from="117" to="488">IPR000583</domain>
+                  <domain confidence="20.317" from="117" to="516">IPR017932</domain>
+                  <domain confidence="8.9E-114" from="564" to="859">IPR006982</domain>
+                  <domain confidence="5.49E-85" from="1353" to="1612">IPR002489</domain>
+                  <domain confidence="1.8E-97" from="554" to="906">IPR013785</domain>
+                  <domain confidence="4.4E-164" from="947" to="1335">IPR013785</domain>
+                  <domain confidence="3.7E-159" from="917" to="1301">IPR002932</domain>
+                  <domain confidence="4.9E-59" from="1382" to="1572">IPR002489</domain>
+                  <domain confidence="5.1E-90" from="1367" to="1620">IPR002489</domain>
+                </domain_architecture>
+              </sequence>
+            </clade>
+        </clade>
+        <clade>
+          <name>PP00212G00220</name>
+          <branch_length>0.12216</branch_length>
+        <taxonomy>
+              <code>ppa</code>
+            </taxonomy>
+            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PP00212G00220</property>
+            <sequence>
+              <domain_architecture length="1627">
+                <domain confidence="2.7E-93" from="1361" to="1617">IPR002489</domain>
+                <domain confidence="4.9E-158" from="910" to="1294">IPR002932</domain>
+                <domain confidence="1.6E-115" from="557" to="852">IPR006982</domain>
+                <domain confidence="6.5E-162" from="937" to="1340">IPR013785</domain>
+                <domain confidence="3.14E-87" from="1348" to="1607">IPR002489</domain>
+                <domain confidence="21.325" from="110" to="509">IPR017932</domain>
+                <domain confidence="7.3E-63" from="1375" to="1567">IPR002489</domain>
+                <domain confidence="1.3E-133" from="110" to="481">IPR000583</domain>
+                <domain confidence="1.1E-100" from="543" to="900">IPR013785</domain>
+              </domain_architecture>
+            </sequence>
+          </clade>
+      </clade>
+      <clade>
+        <branch_length>0.11596</branch_length>
+        <confidence type="bootstrap">100.0</confidence>
+        <clade>
+          <name>OL20G02060</name>
+          <branch_length>0.34122</branch_length>
+        <taxonomy>
+              <code>olu</code>
+            </taxonomy>
+            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/OL20G02060</property>
+            <sequence>
+              <domain_architecture length="1563">
+                <domain confidence="1.1E-102" from="495" to="787">IPR006982</domain>
+                <domain confidence="4.0E-161" from="874" to="1267">IPR013785</domain>
+                <domain confidence="19.755" from="45" to="447">IPR017932</domain>
+                <domain confidence="7.1E-124" from="45" to="416">IPR000583</domain>
+                <domain confidence="1.7E-88" from="1301" to="1555">IPR002489</domain>
+                <domain confidence="1.57E-83" from="1291" to="1548">IPR002489</domain>
+                <domain confidence="5.4E-93" from="488" to="829">IPR013785</domain>
+                <domain confidence="1.1E-150" from="847" to="1237">IPR002932</domain>
+                <domain confidence="4.5E-59" from="1316" to="1508">IPR002489</domain>
+              </domain_architecture>
+            </sequence>
+          </clade>
+        <clade>
+          <name>CR12G06740</name>
+          <branch_length>0.28998</branch_length>
+        <taxonomy>
+              <code>cre</code>
+            </taxonomy>
+            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CR12G06740</property>
+            <sequence>
+              <domain_architecture length="1630">
+                <domain confidence="1.0E-126" from="104" to="473">IPR000583</domain>
+                <domain confidence="2.9E-156" from="907" to="1298">IPR002932</domain>
+                <domain confidence="5.1E-93" from="1362" to="1611">IPR002489</domain>
+                <domain confidence="22.197" from="104" to="504">IPR017932</domain>
+                <domain confidence="1.8E-97" from="543" to="896">IPR013785</domain>
+                <domain confidence="4.0E-169" from="912" to="1336">IPR013785</domain>
+                <domain confidence="6.8E-60" from="1377" to="1568">IPR002489</domain>
+                <domain confidence="7.8E-104" from="555" to="849">IPR006982</domain>
+                <domain confidence="6.28E-88" from="1347" to="1609">IPR002489</domain>
+              </domain_architecture>
+            </sequence>
+          </clade>
+      </clade>
+    </clade>
+  </clade>
+</phylogeny>
+<taxonomies>
+    <taxonomy code="gma">
+      <color>0x186EB5</color>
+      <name>Glycine max</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Glycine+max</url>
+    </taxonomy>
+    <taxonomy code="zma">
+      <color>0x5E610B</color>
+      <name>Zea mays</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Zea+mays</url>
+    </taxonomy>
+    <taxonomy code="mtr">
+      <color>0x4980AD</color>
+      <name>Medicago truncatula</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Medicago+truncatula</url>
+    </taxonomy>
+    <taxonomy code="tca">
+      <color>0x37BD42</color>
+      <name>Theobroma cacao</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Theobroma+cacao</url>
+    </taxonomy>
+    <taxonomy code="fve">
+      <color>0x25ACD9</color>
+      <name>Fragaria vesca</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Fragaria+vesca</url>
+    </taxonomy>
+    <taxonomy code="aly">
+      <color>0x40FF00</color>
+      <name>Arabidopsis lyrata</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Arabidopsis+lyrata</url>
+    </taxonomy>
+    <taxonomy code="cre">
+      <color>0x61210B</color>
+      <name>Chlamydomonas reinhardtii</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Chlamydomonas+reinhardtii</url>
+    </taxonomy>
+    <taxonomy code="cla">
+      <color>0x95C0CF</color>
+      <name>Citrullus lanatus</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Citrullus+lanatus</url>
+    </taxonomy>
+    <taxonomy code="osa">
+      <color>0xF7BE81</color>
+      <name>Oryza sativa ssp. japonica</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Oryza+sativa+ssp.+japonica</url>
+    </taxonomy>
+    <taxonomy code="atr">
+      <color>0xFE844E</color>
+      <name>Amborella trichopoda</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Amborella+trichopoda</url>
+    </taxonomy>
+    <taxonomy code="mes">
+      <color>0x6D68C4</color>
+      <name>Manihot esculenta</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Manihot+esculenta</url>
+    </taxonomy>
+    <taxonomy code="cpa">
+      <color>0xC8FE2E</color>
+      <name>Carica papaya</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Carica+papaya</url>
+    </taxonomy>
+    <taxonomy code="egr">
+      <color>0x516B54</color>
+      <name>Eucalyptus grandis</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Eucalyptus+grandis</url>
+    </taxonomy>
+    <taxonomy code="bra">
+      <color>0xD8F6CE</color>
+      <name>Brassica rapa</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Brassica+rapa</url>
+    </taxonomy>
+    <taxonomy code="olu">
+      <color>0x610B0B</color>
+      <name>Ostreococcus lucimarinus</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Ostreococcus+lucimarinus</url>
+    </taxonomy>
+    <taxonomy code="ath">
+      <color>0x82FA58</color>
+      <name>Arabidopsis thaliana</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Arabidopsis+thaliana</url>
+    </taxonomy>
+    <taxonomy code="bvu">
+      <color>0xA3389D</color>
+      <name>Beta vulgaris</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Beta+vulgaris</url>
+    </taxonomy>
+    <taxonomy code="cru">
+      <color>0x80FF00</color>
+      <name>Capsella rubella</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Capsella+rubella</url>
+    </taxonomy>
+    <taxonomy code="gra">
+      <color>0x37BA49</color>
+      <name>Gossypium raimondii</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Gossypium+raimondii</url>
+    </taxonomy>
+    <taxonomy code="tpa">
+      <color>0xBCF5A9</color>
+      <name>Thellungiella parvula</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Thellungiella+parvula</url>
+    </taxonomy>
+    <taxonomy code="stu">
+      <color>0x9D4FB0</color>
+      <name>Solanum tuberosum</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Solanum+tuberosum</url>
+    </taxonomy>
+    <taxonomy code="rco">
+      <color>0x8986BF</color>
+      <name>Ricinus communis</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Ricinus+communis</url>
+    </taxonomy>
+    <taxonomy code="cme">
+      <color>0xA9C5CF</color>
+      <name>Cucumis melo</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Cucumis+melo</url>
+    </taxonomy>
+    <taxonomy code="mdo">
+      <color>0x4DB4D6</color>
+      <name>Malus domestica</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Malus+domestica</url>
+    </taxonomy>
+    <taxonomy code="sly">
+      <color>0xA378AD</color>
+      <name>Solanum lycopersicum</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Solanum+lycopersicum</url>
+    </taxonomy>
+    <taxonomy code="ppa">
+      <color>0xFE642E</color>
+      <name>Physcomitrella patens</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Physcomitrella+patens</url>
+    </taxonomy>
+    <taxonomy code="csi">
+      <color>0x095C10</color>
+      <name>Citrus sinensis</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Citrus+sinensis</url>
+    </taxonomy>
+    <taxonomy code="ppe">
+      <color>0x73BAD1</color>
+      <name>Prunus persica</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Prunus+persica</url>
+    </taxonomy>
+    <taxonomy code="vvi">
+      <color>0xB595CF</color>
+      <name>Vitis vinifera</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Vitis+vinifera</url>
+    </taxonomy>
+    <taxonomy code="ptr">
+      <color>0x443DC4</color>
+      <name>Populus trichocarpa</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Populus+trichocarpa</url>
+    </taxonomy>
+  </taxonomies>
+  <domains>
+    <domain name="IPR016034">
+      <color>0x6FC3D2</color>
+      <description>Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR016034</url>
+    </domain>
+    <domain name="IPR000583">
+      <color>0xFCB87B</color>
+      <description>Class II glutamine amidotransferase domain</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR000583</url>
+    </domain>
+    <domain name="IPR013785">
+      <color>0x2DFDD8</color>
+      <description>Aldolase-type TIM barrel</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR013785</url>
+    </domain>
+    <domain name="IPR028261">
+      <color>0x8F7B5E</color>
+      <description>Dihydroprymidine dehydrogenase domain II</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR028261</url>
+    </domain>
+    <domain name="IPR009051">
+      <color>0x2819CC</color>
+      <description>Alpha-helical ferredoxin</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR009051</url>
+    </domain>
+    <domain name="IPR006005">
+      <color>0x8372B6</color>
+      <description>Glutamate synthase, NADH/NADPH, small subunit 1</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR006005</url>
+    </domain>
+    <domain name="IPR027484">
+      <color>0xABB167</color>
+      <description>Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR027484</url>
+    </domain>
+    <domain name="IPR027483">
+      <color>0xABB267</color>
+      <description>Phosphatidylinositol-4-phosphate 5-kinase, C-terminal</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR027483</url>
+    </domain>
+    <domain name="IPR002932">
+      <color>0xE6FE96</color>
+      <description>Glutamate synthase, central-C</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR002932</url>
+    </domain>
+    <domain name="IPR017932">
+      <color>0xB143C9</color>
+      <description>Glutamine amidotransferase type 2 domain</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR017932</url>
+    </domain>
+    <domain name="IPR023753">
+      <color>0xF8E893</color>
+      <description>Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR023753</url>
+    </domain>
+    <domain name="IPR016040">
+      <color>0x6FC3D2</color>
+      <description>NAD(P)-binding domain</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR016040</url>
+    </domain>
+    <domain name="IPR003409">
+      <color>0xD9F79B</color>
+      <description>MORN motif</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR003409</url>
+    </domain>
+    <domain name="IPR006982">
+      <color>0x6136BE</color>
+      <description>Glutamate synthase, central-N</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR006982</url>
+    </domain>
+    <domain name="IPR013027">
+      <color>0x1EFCD8</color>
+      <description>FAD-dependent pyridine nucleotide-disulphide oxidoreductase</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR013027</url>
+    </domain>
+    <domain name="IPR001327">
+      <color>0xF5E584</color>
+      <description>Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR001327</url>
+    </domain>
+    <domain name="IPR002489">
+      <color>0xF1FC91</color>
+      <description>Glutamate synthase, alpha subunit, C-terminal</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR002489</url>
+    </domain>
+    <domain name="IPR002498">
+      <color>0xF1FC91</color>
+      <description>Phosphatidylinositol-4-phosphate 5-kinase, core</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR002498</url>
+    </domain>
+  </domains>
+</phyloxml>
diff --git a/samples/duplication.xml b/submissions/innergraphs.xml
old mode 100755
new mode 100644
similarity index 97%
rename from samples/duplication.xml
rename to submissions/innergraphs.xml
index 5a491db..6df013b
--- a/samples/duplication.xml
+++ b/submissions/innergraphs.xml
@@ -1,2901 +1,2901 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?><phyloxml xmlns="http://www.phyloxml.org" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.00/phyloxml.xsd">
-<phylogeny rooted="true">
-  <clade>
-      <name>n606</name>
-      <branch_length>0.05772</branch_length>
-      <confidence type="unknown">100.0</confidence>
-      <taxonomy>
-        <code>Angiosperms</code>
-      </taxonomy>
-      <events>
-        <duplications>1</duplications>
-      </events>
-      <clade>
-        <name>n364</name>
-        <branch_length>0.30545</branch_length>
-        <confidence type="unknown">100.0</confidence>
-        <taxonomy>
-          <code>Angiosperms</code>
-        </taxonomy>
-        <events>
-          <duplications>1</duplications>
-        </events>
-        <clade>
-          <name>n362</name>
-          <branch_length>0.1586</branch_length>
-          <confidence type="unknown">90.0</confidence>
-          <taxonomy>
-            <code>Angiosperms</code>
-          </taxonomy>
-          <events>
-            <speciations>1</speciations>
-          </events>
-          <clade>
-            <name>n292</name>
-            <branch_length>0.14002</branch_length>
-            <confidence type="unknown">1.0</confidence>
-            <taxonomy>
-              <code>Monocots</code>
-            </taxonomy>
-            <events>
-              <duplications>1</duplications>
-            </events>
-            <clade>
-              <name>n290</name>
-              <branch_length>0.9043</branch_length>
-              <confidence type="unknown">100.0</confidence>
-              <taxonomy>
-                <code>Monocots</code>
-              </taxonomy>
-              <events>
-                <speciations>1</speciations>
-              </events>
-              <clade>
-                <name>ZM04G38950</name>
-                <branch_length>0.18765</branch_length>
-                <taxonomy>
-                  <code>ZM</code>
-                </taxonomy>
-              <taxonomy><code>zma</code></taxonomy></clade>
-              <clade>
-                <name>OS02G07850</name>
-                <branch_length>0.31196</branch_length>
-                <taxonomy>
-                  <code>OS</code>
-                </taxonomy>
-              <taxonomy><code>osa</code></taxonomy></clade>
-            </clade>
-            <clade>
-              <name>ZM05G04990</name>
-              <branch_length>0.50823</branch_length>
-              <taxonomy>
-                <code>ZM</code>
-              </taxonomy>
-            <taxonomy><code>zma</code></taxonomy></clade>
-          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.5</property></clade>
-          <clade>
-            <name>n361</name>
-            <branch_length>0.1759</branch_length>
-            <confidence type="unknown">99.0</confidence>
-            <taxonomy>
-              <code>Dicots</code>
-            </taxonomy>
-            <events>
-              <duplications>1</duplications>
-            </events>
-            <clade>
-              <name>n357</name>
-              <branch_length>0.03278</branch_length>
-              <confidence type="unknown">82.0</confidence>
-              <taxonomy>
-                <code>Dicots</code>
-              </taxonomy>
-              <events>
-                <duplications>1</duplications>
-              </events>
-              <clade>
-                <name>n355</name>
-                <branch_length>0.02161</branch_length>
-                <confidence type="unknown">89.0</confidence>
-                <taxonomy>
-                  <code>Dicots</code>
-                </taxonomy>
-                <events>
-                  <duplications>1</duplications>
-                </events>
-                <clade>
-                  <name>n345</name>
-                  <branch_length>0.0222</branch_length>
-                  <confidence type="unknown">70.0</confidence>
-                  <taxonomy>
-                    <code>Dicots</code>
-                  </taxonomy>
-                  <events>
-                    <duplications>1</duplications>
-                  </events>
-                  <clade>
-                    <name>n309</name>
-                    <branch_length>0.0307</branch_length>
-                    <confidence type="unknown">70.0</confidence>
-                    <taxonomy>
-                      <code>Rosids1</code>
-                    </taxonomy>
-                    <events>
-                      <duplications>1</duplications>
-                    </events>
-                    <clade>
-                      <name>n295</name>
-                      <branch_length>0.02455</branch_length>
-                      <confidence type="unknown">63.0</confidence>
-                      <taxonomy>
-                        <code>ND_Malvids2</code>
-                      </taxonomy>
-                      <events>
-                        <speciations>1</speciations>
-                      </events>
-                      <clade>
-                        <name>CS00050G00160</name>
-                        <branch_length>0.10482</branch_length>
-                        <taxonomy>
-                          <code>CS</code>
-                        </taxonomy>
-                      <taxonomy><code>csi</code></taxonomy></clade>
-                      <clade>
-                        <name>CP00095G00310</name>
-                        <branch_length>0.19767</branch_length>
-                        <taxonomy>
-                          <code>CP</code>
-                        </taxonomy>
-                      <taxonomy><code>cpa</code></taxonomy></clade>
-                    </clade>
-                    <clade>
-                      <name>n308</name>
-                      <branch_length>0.01554</branch_length>
-                      <confidence type="unknown">80.0</confidence>
-                      <taxonomy>
-                        <code>Rosids1</code>
-                      </taxonomy>
-                      <events>
-                        <duplications>1</duplications>
-                      </events>
-                      <clade>
-                        <name>n300</name>
-                        <branch_length>0.03234</branch_length>
-                        <confidence type="unknown">72.0</confidence>
-                        <taxonomy>
-                          <code>Rosids1</code>
-                        </taxonomy>
-                        <events>
-                          <speciations>1</speciations>
-                        </events>
-                        <clade>
-                          <name>n298</name>
-                          <branch_length>0.02265</branch_length>
-                          <confidence type="unknown">80.0</confidence>
-                          <taxonomy>
-                            <code>Fabids</code>
-                          </taxonomy>
-                          <events>
-                            <speciations>1</speciations>
-                          </events>
-                          <clade>
-                            <name>PT06G07700</name>
-                            <branch_length>0.14693</branch_length>
-                            <taxonomy>
-                              <code>PT</code>
-                            </taxonomy>
-                          <taxonomy><code>ptr</code></taxonomy></clade>
-                          <clade>
-                            <name>LJ4G034970</name>
-                            <branch_length>0.47497</branch_length>
-                            <taxonomy>
-                              <code>LJ</code>
-                            </taxonomy>
-                          <taxonomy><code>lja</code></taxonomy></clade>
-                        </clade>
-                        <clade>
-                          <name>TC0009G18120</name>
-                          <branch_length>0.11801</branch_length>
-                          <taxonomy>
-                            <code>TC</code>
-                          </taxonomy>
-                        <taxonomy><code>tca</code></taxonomy></clade>
-                      </clade>
-                      <clade>
-                        <name>n307</name>
-                        <branch_length>0.06169</branch_length>
-                        <confidence type="unknown">100.0</confidence>
-                        <taxonomy>
-                          <code>Rosaceae</code>
-                        </taxonomy>
-                        <events>
-                          <speciations>1</speciations>
-                        </events>
-                        <clade>
-                          <name>n305</name>
-                          <branch_length>0.02508</branch_length>
-                          <confidence type="unknown">68.0</confidence>
-                          <taxonomy>
-                            <code>Maloideae</code>
-                          </taxonomy>
-                          <events>
-                            <duplications>1</duplications>
-                          </events>
-                          <clade>
-                            <name>n303</name>
-                            <branch_length>0.00964</branch_length>
-                            <confidence type="unknown">20.0</confidence>
-                            <taxonomy>
-                              <code>Maloideae</code>
-                            </taxonomy>
-                            <events>
-                              <speciations>1</speciations>
-                            </events>
-                            <clade>
-                              <name>PPE_004G23710</name>
-                              <branch_length>0.04686</branch_length>
-                              <taxonomy>
-                                <code>PPE</code>
-                              </taxonomy>
-                            <taxonomy><code>ppe</code></taxonomy></clade>
-                            <clade>
-                              <name>MD05G012680</name>
-                              <branch_length>0.11939</branch_length>
-                              <taxonomy>
-                                <code>MD</code>
-                              </taxonomy>
-                            <taxonomy><code>mdo</code></taxonomy></clade>
-                          </clade>
-                          <clade>
-                            <name>MD13G028600</name>
-                            <branch_length>0.40852</branch_length>
-                            <taxonomy>
-                              <code>MD</code>
-                            </taxonomy>
-                          <taxonomy><code>mdo</code></taxonomy></clade>
-                        <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.5</property></clade>
-                        <clade>
-                          <name>FV4G04120</name>
-                          <branch_length>0.12172</branch_length>
-                          <taxonomy>
-                            <code>FV</code>
-                          </taxonomy>
-                        <taxonomy><code>fve</code></taxonomy></clade>
-                      </clade>
-                    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
-                  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
-                  <clade>
-                    <name>n344</name>
-                    <branch_length>0.01579</branch_length>
-                    <confidence type="unknown">54.0</confidence>
-                    <taxonomy>
-                      <code>Dicots</code>
-                    </taxonomy>
-                    <events>
-                      <duplications>1</duplications>
-                    </events>
-                    <clade>
-                      <name>n342</name>
-                      <branch_length>0.01128</branch_length>
-                      <confidence type="unknown">75.0</confidence>
-                      <taxonomy>
-                        <code>Dicots</code>
-                      </taxonomy>
-                      <events>
-                        <duplications>1</duplications>
-                      </events>
-                      <clade>
-                        <name>n330</name>
-                        <branch_length>0.02456</branch_length>
-                        <confidence type="unknown">56.0</confidence>
-                        <taxonomy>
-                          <code>Dicots</code>
-                        </taxonomy>
-                        <events>
-                          <speciations>1</speciations>
-                        </events>
-                        <clade>
-                          <name>n328</name>
-                          <branch_length>0.17209</branch_length>
-                          <confidence type="unknown">100.0</confidence>
-                          <taxonomy>
-                            <code>Brassicaceae</code>
-                          </taxonomy>
-                          <events>
-                            <duplications>1</duplications>
-                          </events>
-                          <clade>
-                            <name>n320</name>
-                            <branch_length>0.09844</branch_length>
-                            <confidence type="unknown">100.0</confidence>
-                            <taxonomy>
-                              <code>Brassicaceae</code>
-                            </taxonomy>
-                            <events>
-                              <speciations>1</speciations>
-                            </events>
-                            <clade>
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-                <taxonomy><code>egr</code></taxonomy></clade>
-              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
-              <clade>
-                <name>VV18G00680</name>
-                <branch_length>0.50047</branch_length>
-                <taxonomy>
-                  <code>VV</code>
-                </taxonomy>
-              <taxonomy><code>vvi</code></taxonomy></clade>
-            </clade>
-          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.6923</property></clade>
-        </clade>
-      <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.7667</property></clade>
-  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.8333</property></clade>
-</phylogeny>
-<graphs>
-  <graph type="pie">
-    <name>Duplication</name>
-      <legend show="0">
-        <field>
-           <name>Consistency score</name>
-           <color>0xFF0000</color>
-           <background>0x00FF00</background>
-        </field>         
-     </legend>
-     <data tag="property" ref="duplication consistency score:">
-        <min>0</min>
-        <max>1</max>
-     </data>
-  </graph>
-  <graph type="binary">
-    <name>Speciations</name>
-      <legend show="0">
-        <field>
-           <name>Speciations</name>
-           <color>0x00FF00</color>
-           <shape>circle</shape>
-        </field>         
-     </legend>
-     <data tag="events" ref="speciations">
-     </data>
-  </graph>
-</graphs>
+<?xml version="1.0" encoding="UTF-8" standalone="no"?><phyloxml xmlns="http://www.phyloxml.org" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.00/phyloxml.xsd">
+<phylogeny rooted="true">
+  <clade>
+      <name>n606</name>
+      <branch_length>0.05772</branch_length>
+      <confidence type="unknown">100.0</confidence>
+      <taxonomy>
+        <code>Angiosperms</code>
+      </taxonomy>
+      <events>
+        <duplications>1</duplications>
+      </events>
+      <clade>
+        <name>n364</name>
+        <branch_length>0.30545</branch_length>
+        <confidence type="unknown">100.0</confidence>
+        <taxonomy>
+          <code>Angiosperms</code>
+        </taxonomy>
+        <events>
+          <duplications>1</duplications>
+        </events>
+        <clade>
+          <name>n362</name>
+          <branch_length>0.1586</branch_length>
+          <confidence type="unknown">90.0</confidence>
+          <taxonomy>
+            <code>Angiosperms</code>
+          </taxonomy>
+          <events>
+            <speciations>1</speciations>
+          </events>
+          <clade>
+            <name>n292</name>
+            <branch_length>0.14002</branch_length>
+            <confidence type="unknown">1.0</confidence>
+            <taxonomy>
+              <code>Monocots</code>
+            </taxonomy>
+            <events>
+              <duplications>1</duplications>
+            </events>
+            <clade>
+              <name>n290</name>
+              <branch_length>0.9043</branch_length>
+              <confidence type="unknown">100.0</confidence>
+              <taxonomy>
+                <code>Monocots</code>
+              </taxonomy>
+              <events>
+                <speciations>1</speciations>
+              </events>
+              <clade>
+                <name>ZM04G38950</name>
+                <branch_length>0.18765</branch_length>
+                <taxonomy>
+                  <code>ZM</code>
+                </taxonomy>
+              <taxonomy><code>zma</code></taxonomy></clade>
+              <clade>
+                <name>OS02G07850</name>
+                <branch_length>0.31196</branch_length>
+                <taxonomy>
+                  <code>OS</code>
+                </taxonomy>
+              <taxonomy><code>osa</code></taxonomy></clade>
+            </clade>
+            <clade>
+              <name>ZM05G04990</name>
+              <branch_length>0.50823</branch_length>
+              <taxonomy>
+                <code>ZM</code>
+              </taxonomy>
+            <taxonomy><code>zma</code></taxonomy></clade>
+          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.5</property></clade>
+          <clade>
+            <name>n361</name>
+            <branch_length>0.1759</branch_length>
+            <confidence type="unknown">99.0</confidence>
+            <taxonomy>
+              <code>Dicots</code>
+            </taxonomy>
+            <events>
+              <duplications>1</duplications>
+            </events>
+            <clade>
+              <name>n357</name>
+              <branch_length>0.03278</branch_length>
+              <confidence type="unknown">82.0</confidence>
+              <taxonomy>
+                <code>Dicots</code>
+              </taxonomy>
+              <events>
+                <duplications>1</duplications>
+              </events>
+              <clade>
+                <name>n355</name>
+                <branch_length>0.02161</branch_length>
+                <confidence type="unknown">89.0</confidence>
+                <taxonomy>
+                  <code>Dicots</code>
+                </taxonomy>
+                <events>
+                  <duplications>1</duplications>
+                </events>
+                <clade>
+                  <name>n345</name>
+                  <branch_length>0.0222</branch_length>
+                  <confidence type="unknown">70.0</confidence>
+                  <taxonomy>
+                    <code>Dicots</code>
+                  </taxonomy>
+                  <events>
+                    <duplications>1</duplications>
+                  </events>
+                  <clade>
+                    <name>n309</name>
+                    <branch_length>0.0307</branch_length>
+                    <confidence type="unknown">70.0</confidence>
+                    <taxonomy>
+                      <code>Rosids1</code>
+                    </taxonomy>
+                    <events>
+                      <duplications>1</duplications>
+                    </events>
+                    <clade>
+                      <name>n295</name>
+                      <branch_length>0.02455</branch_length>
+                      <confidence type="unknown">63.0</confidence>
+                      <taxonomy>
+                        <code>ND_Malvids2</code>
+                      </taxonomy>
+                      <events>
+                        <speciations>1</speciations>
+                      </events>
+                      <clade>
+                        <name>CS00050G00160</name>
+                        <branch_length>0.10482</branch_length>
+                        <taxonomy>
+                          <code>CS</code>
+                        </taxonomy>
+                      <taxonomy><code>csi</code></taxonomy></clade>
+                      <clade>
+                        <name>CP00095G00310</name>
+                        <branch_length>0.19767</branch_length>
+                        <taxonomy>
+                          <code>CP</code>
+                        </taxonomy>
+                      <taxonomy><code>cpa</code></taxonomy></clade>
+                    </clade>
+                    <clade>
+                      <name>n308</name>
+                      <branch_length>0.01554</branch_length>
+                      <confidence type="unknown">80.0</confidence>
+                      <taxonomy>
+                        <code>Rosids1</code>
+                      </taxonomy>
+                      <events>
+                        <duplications>1</duplications>
+                      </events>
+                      <clade>
+                        <name>n300</name>
+                        <branch_length>0.03234</branch_length>
+                        <confidence type="unknown">72.0</confidence>
+                        <taxonomy>
+                          <code>Rosids1</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>1</speciations>
+                        </events>
+                        <clade>
+                          <name>n298</name>
+                          <branch_length>0.02265</branch_length>
+                          <confidence type="unknown">80.0</confidence>
+                          <taxonomy>
+                            <code>Fabids</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>1</speciations>
+                          </events>
+                          <clade>
+                            <name>PT06G07700</name>
+                            <branch_length>0.14693</branch_length>
+                            <taxonomy>
+                              <code>PT</code>
+                            </taxonomy>
+                          <taxonomy><code>ptr</code></taxonomy></clade>
+                          <clade>
+                            <name>LJ4G034970</name>
+                            <branch_length>0.47497</branch_length>
+                            <taxonomy>
+                              <code>LJ</code>
+                            </taxonomy>
+                          <taxonomy><code>lja</code></taxonomy></clade>
+                        </clade>
+                        <clade>
+                          <name>TC0009G18120</name>
+                          <branch_length>0.11801</branch_length>
+                          <taxonomy>
+                            <code>TC</code>
+                          </taxonomy>
+                        <taxonomy><code>tca</code></taxonomy></clade>
+                      </clade>
+                      <clade>
+                        <name>n307</name>
+                        <branch_length>0.06169</branch_length>
+                        <confidence type="unknown">100.0</confidence>
+                        <taxonomy>
+                          <code>Rosaceae</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>1</speciations>
+                        </events>
+                        <clade>
+                          <name>n305</name>
+                          <branch_length>0.02508</branch_length>
+                          <confidence type="unknown">68.0</confidence>
+                          <taxonomy>
+                            <code>Maloideae</code>
+                          </taxonomy>
+                          <events>
+                            <duplications>1</duplications>
+                          </events>
+                          <clade>
+                            <name>n303</name>
+                            <branch_length>0.00964</branch_length>
+                            <confidence type="unknown">20.0</confidence>
+                            <taxonomy>
+                              <code>Maloideae</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>1</speciations>
+                            </events>
+                            <clade>
+                              <name>PPE_004G23710</name>
+                              <branch_length>0.04686</branch_length>
+                              <taxonomy>
+                                <code>PPE</code>
+                              </taxonomy>
+                            <taxonomy><code>ppe</code></taxonomy></clade>
+                            <clade>
+                              <name>MD05G012680</name>
+                              <branch_length>0.11939</branch_length>
+                              <taxonomy>
+                                <code>MD</code>
+                              </taxonomy>
+                            <taxonomy><code>mdo</code></taxonomy></clade>
+                          </clade>
+                          <clade>
+                            <name>MD13G028600</name>
+                            <branch_length>0.40852</branch_length>
+                            <taxonomy>
+                              <code>MD</code>
+                            </taxonomy>
+                          <taxonomy><code>mdo</code></taxonomy></clade>
+                        <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.5</property></clade>
+                        <clade>
+                          <name>FV4G04120</name>
+                          <branch_length>0.12172</branch_length>
+                          <taxonomy>
+                            <code>FV</code>
+                          </taxonomy>
+                        <taxonomy><code>fve</code></taxonomy></clade>
+                      </clade>
+                    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+                  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+                  <clade>
+                    <name>n344</name>
+                    <branch_length>0.01579</branch_length>
+                    <confidence type="unknown">54.0</confidence>
+                    <taxonomy>
+                      <code>Dicots</code>
+                    </taxonomy>
+                    <events>
+                      <duplications>1</duplications>
+                    </events>
+                    <clade>
+                      <name>n342</name>
+                      <branch_length>0.01128</branch_length>
+                      <confidence type="unknown">75.0</confidence>
+                      <taxonomy>
+                        <code>Dicots</code>
+                      </taxonomy>
+                      <events>
+                        <duplications>1</duplications>
+                      </events>
+                      <clade>
+                        <name>n330</name>
+                        <branch_length>0.02456</branch_length>
+                        <confidence type="unknown">56.0</confidence>
+                        <taxonomy>
+                          <code>Dicots</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>1</speciations>
+                        </events>
+                        <clade>
+                          <name>n328</name>
+                          <branch_length>0.17209</branch_length>
+                          <confidence type="unknown">100.0</confidence>
+                          <taxonomy>
+                            <code>Brassicaceae</code>
+                          </taxonomy>
+                          <events>
+                            <duplications>1</duplications>
+                          </events>
+                          <clade>
+                            <name>n320</name>
+                            <branch_length>0.09844</branch_length>
+                            <confidence type="unknown">100.0</confidence>
+                            <taxonomy>
+                              <code>Brassicaceae</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>1</speciations>
+                            </events>
+                            <clade>
+                              <name>n314</name>
+                              <branch_length>0.01791</branch_length>
+                              <confidence type="unknown">86.0</confidence>
+                              <taxonomy>
+                                <code>ND_Brassicaceae1</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>1</speciations>
+                              </events>
+                              <clade>
+                                <name>n312</name>
+                                <branch_length>0.01967</branch_length>
+                                <confidence type="unknown">38.0</confidence>
+                                <taxonomy>
+                                  <code>BR</code>
+                                </taxonomy>
+                                <events>
+                                  <duplications>1</duplications>
+                                </events>
+                                <clade>
+                                  <name>BR07G01540</name>
+                                  <branch_length>0.14024</branch_length>
+                                  <taxonomy>
+                                    <code>BR</code>
+                                  </taxonomy>
+                                <taxonomy><code>bra</code></taxonomy></clade>
+                                <clade>
+                                  <name>BR09G10070</name>
+                                  <branch_length>0.11126</branch_length>
+                                  <taxonomy>
+                                    <code>BR</code>
+                                  </taxonomy>
+                                <taxonomy><code>bra</code></taxonomy></clade>
+                              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property></clade>
+                              <clade>
+                                <name>TP3G32490</name>
+                                <branch_length>0.11837</branch_length>
+                                <taxonomy>
+                                  <code>TP</code>
+                                </taxonomy>
+                              <taxonomy><code>tpa</code></taxonomy></clade>
+                            </clade>
+                            <clade>
+                              <name>n319</name>
+                              <branch_length>0.02181</branch_length>
+                              <confidence type="unknown">66.0</confidence>
+                              <taxonomy>
+                                <code>Camelineae</code>
+                              </taxonomy>
+                              <events>
+                                <duplications>1</duplications>
+                              </events>
+                              <clade>
+                                <name>n317</name>
+                                <branch_length>0.04971</branch_length>
+                                <confidence type="unknown">99.0</confidence>
+                                <taxonomy>
+                                  <code>Camelineae</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>1</speciations>
+                                </events>
+                                <clade>
+                                  <name>CRU_003G32080</name>
+                                  <branch_length>0.02153</branch_length>
+                                  <taxonomy>
+                                    <code>CRU</code>
+                                  </taxonomy>
+                                <taxonomy><code>cru</code></taxonomy></clade>
+                                <clade>
+                                  <name>AT2G19090</name>
+                                  <branch_length>0.04291</branch_length>
+                                  <taxonomy>
+                                    <code>AT</code>
+                                  </taxonomy>
+                                <taxonomy><code>ath</code></taxonomy></clade>
+                              </clade>
+                              <clade>
+                                <name>AL3G40650</name>
+                                <branch_length>0.0463</branch_length>
+                                <taxonomy>
+                                  <code>AL</code>
+                                </taxonomy>
+                              <taxonomy><code>aly</code></taxonomy></clade>
+                            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+                          </clade>
+                          <clade>
+                            <name>n327</name>
+                            <branch_length>0.10685</branch_length>
+                            <confidence type="unknown">100.0</confidence>
+                            <taxonomy>
+                              <code>Brassicaceae</code>
+                            </taxonomy>
+                            <events>
+                              <duplications>1</duplications>
+                            </events>
+                            <clade>
+                              <name>n325</name>
+                              <branch_length>0.07367</branch_length>
+                              <confidence type="unknown">94.0</confidence>
+                              <taxonomy>
+                                <code>Brassicaceae</code>
+                              </taxonomy>
+                              <events>
+                                <duplications>1</duplications>
+                              </events>
+                              <clade>
+                                <name>n323</name>
+                                <branch_length>0.05092</branch_length>
+                                <confidence type="unknown">60.0</confidence>
+                                <taxonomy>
+                                  <code>Brassicaceae</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>1</speciations>
+                                </events>
+                                <clade>
+                                  <name>AT4G30130</name>
+                                  <branch_length>0.14431</branch_length>
+                                  <taxonomy>
+                                    <code>AT</code>
+                                  </taxonomy>
+                                <taxonomy><code>ath</code></taxonomy></clade>
+                                <clade>
+                                  <name>TP7G27980</name>
+                                  <branch_length>0.1796</branch_length>
+                                  <taxonomy>
+                                    <code>TP</code>
+                                  </taxonomy>
+                                <taxonomy><code>tpa</code></taxonomy></clade>
+                              </clade>
+                              <clade>
+                                <name>AL7G11480</name>
+                                <branch_length>0.03396</branch_length>
+                                <taxonomy>
+                                  <code>AL</code>
+                                </taxonomy>
+                              <taxonomy><code>aly</code></taxonomy></clade>
+                            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+                            <clade>
+                              <name>BR01G07300</name>
+                              <branch_length>0.23615</branch_length>
+                              <taxonomy>
+                                <code>BR</code>
+                              </taxonomy>
+                            <taxonomy><code>bra</code></taxonomy></clade>
+                          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+                        <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.8</property></clade>
+                        <clade>
+                          <name>BV8G06180</name>
+                          <branch_length>0.27962</branch_length>
+                          <taxonomy>
+                            <code>BV</code>
+                          </taxonomy>
+                        <taxonomy><code>bvu</code></taxonomy></clade>
+                      </clade>
+                      <clade>
+                        <name>n341</name>
+                        <branch_length>0.0877</branch_length>
+                        <confidence type="unknown">100.0</confidence>
+                        <taxonomy>
+                          <code>Papilionoideae</code>
+                        </taxonomy>
+                        <events>
+                          <duplications>1</duplications>
+                        </events>
+                        <clade>
+                          <name>n335</name>
+                          <branch_length>0.05465</branch_length>
+                          <confidence type="unknown">99.0</confidence>
+                          <taxonomy>
+                            <code>Papilionoideae</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>1</speciations>
+                          </events>
+                          <clade>
+                            <name>n333</name>
+                            <branch_length>0.07296</branch_length>
+                            <confidence type="unknown">99.0</confidence>
+                            <taxonomy>
+                              <code>GM</code>
+                            </taxonomy>
+                            <events>
+                              <duplications>1</duplications>
+                            </events>
+                            <clade>
+                              <name>GM15G17710</name>
+                              <branch_length>0.05105</branch_length>
+                              <taxonomy>
+                                <code>GM</code>
+                              </taxonomy>
+                            <taxonomy><code>gma</code></taxonomy></clade>
+                            <clade>
+                              <name>GM09G06480</name>
+                              <branch_length>0.0561</branch_length>
+                              <taxonomy>
+                                <code>GM</code>
+                              </taxonomy>
+                            <taxonomy><code>gma</code></taxonomy></clade>
+                          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property></clade>
+                          <clade>
+                            <name>MT2G036920</name>
+                            <branch_length>0.15216</branch_length>
+                            <taxonomy>
+                              <code>MT</code>
+                            </taxonomy>
+                          <taxonomy><code>mtr</code></taxonomy></clade>
+                        </clade>
+                        <clade>
+                          <name>n340</name>
+                          <branch_length>0.03968</branch_length>
+                          <confidence type="unknown">97.0</confidence>
+                          <taxonomy>
+                            <code>Papilionoideae</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>1</speciations>
+                          </events>
+                          <clade>
+                            <name>n338</name>
+                            <branch_length>0.06155</branch_length>
+                            <confidence type="unknown">99.0</confidence>
+                            <taxonomy>
+                              <code>GM</code>
+                            </taxonomy>
+                            <events>
+                              <duplications>1</duplications>
+                            </events>
+                            <clade>
+                              <name>GM17G06810</name>
+                              <branch_length>0.07395</branch_length>
+                              <taxonomy>
+                                <code>GM</code>
+                              </taxonomy>
+                            <taxonomy><code>gma</code></taxonomy></clade>
+                            <clade>
+                              <name>GM13G00650</name>
+                              <branch_length>0.06301</branch_length>
+                              <taxonomy>
+                                <code>GM</code>
+                              </taxonomy>
+                            <taxonomy><code>gma</code></taxonomy></clade>
+                          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property></clade>
+                          <clade>
+                            <name>MT4G127620</name>
+                            <branch_length>0.26455</branch_length>
+                            <taxonomy>
+                              <code>MT</code>
+                            </taxonomy>
+                          <taxonomy><code>mtr</code></taxonomy></clade>
+                        </clade>
+                      <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property></clade>
+                    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+                    <clade>
+                      <name>GR13G24690</name>
+                      <branch_length>0.25387</branch_length>
+                      <taxonomy>
+                        <code>GR</code>
+                      </taxonomy>
+                    <taxonomy><code>gra</code></taxonomy></clade>
+                  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+                <clade>
+                  <name>n354</name>
+                  <branch_length>0.02848</branch_length>
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+                          <code>Rosaceae</code>
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+                              <taxonomy>
+                                <code>MD</code>
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+                            <branch_length>0.04289</branch_length>
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+                        <clade>
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+                              <confidence type="unknown">99.0</confidence>
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+                                <code>Malpighiales</code>
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+                                <confidence type="unknown">97.0</confidence>
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+                                  <code>ND_Brassicaceae1</code>
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+                                  <code>BR</code>
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+                      </taxonomy>
+                      <events>
+                        <duplications>1</duplications>
+                      </events>
+                      <clade>
+                        <name>n560</name>
+                        <branch_length>0.09867</branch_length>
+                        <confidence type="unknown">50.0</confidence>
+                        <taxonomy>
+                          <code>Brassicaceae</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>1</speciations>
+                        </events>
+                        <clade>
+                          <name>TP1G18240</name>
+                          <branch_length>0.20496</branch_length>
+                          <taxonomy>
+                            <code>TP</code>
+                          </taxonomy>
+                        <taxonomy><code>tpa</code></taxonomy></clade>
+                        <clade>
+                          <name>CRU_001G19190</name>
+                          <branch_length>0.16697</branch_length>
+                          <taxonomy>
+                            <code>CRU</code>
+                          </taxonomy>
+                        <taxonomy><code>cru</code></taxonomy></clade>
+                      </clade>
+                      <clade>
+                        <name>AL1G21650</name>
+                        <branch_length>0.15178</branch_length>
+                        <taxonomy>
+                          <code>AL</code>
+                        </taxonomy>
+                      <taxonomy><code>aly</code></taxonomy></clade>
+                    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+                    <clade>
+                      <name>AT1G20530</name>
+                      <branch_length>0.09656</branch_length>
+                      <taxonomy>
+                        <code>AT</code>
+                      </taxonomy>
+                    <taxonomy><code>ath</code></taxonomy></clade>
+                  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+                  <clade>
+                    <name>n597</name>
+                    <branch_length>0.05514</branch_length>
+                    <confidence type="unknown">70.0</confidence>
+                    <taxonomy>
+                      <code>Rosids1</code>
+                    </taxonomy>
+                    <events>
+                      <duplications>1</duplications>
+                    </events>
+                    <clade>
+                      <name>n579</name>
+                      <branch_length>0.05612</branch_length>
+                      <confidence type="unknown">88.0</confidence>
+                      <taxonomy>
+                        <code>ND_Fabids2</code>
+                      </taxonomy>
+                      <events>
+                        <duplications>1</duplications>
+                      </events>
+                      <clade>
+                        <name>n569</name>
+                        <branch_length>0.2887</branch_length>
+                        <confidence type="unknown">100.0</confidence>
+                        <taxonomy>
+                          <code>Rosaceae</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>1</speciations>
+                        </events>
+                        <clade>
+                          <name>n567</name>
+                          <branch_length>0.18644</branch_length>
+                          <confidence type="unknown">99.0</confidence>
+                          <taxonomy>
+                            <code>Maloideae</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>1</speciations>
+                          </events>
+                          <clade>
+                            <name>PPE_001G36390</name>
+                            <branch_length>0.26799</branch_length>
+                            <taxonomy>
+                              <code>PPE</code>
+                            </taxonomy>
+                          <taxonomy><code>ppe</code></taxonomy></clade>
+                          <clade>
+                            <name>MD08G000350</name>
+                            <branch_length>0.31656</branch_length>
+                            <taxonomy>
+                              <code>MD</code>
+                            </taxonomy>
+                          <taxonomy><code>mdo</code></taxonomy></clade>
+                        </clade>
+                        <clade>
+                          <name>FV2G37480</name>
+                          <branch_length>0.43688</branch_length>
+                          <taxonomy>
+                            <code>FV</code>
+                          </taxonomy>
+                        <taxonomy><code>fve</code></taxonomy></clade>
+                      </clade>
+                      <clade>
+                        <name>n578</name>
+                        <branch_length>0.09393</branch_length>
+                        <confidence type="unknown">8.0</confidence>
+                        <taxonomy>
+                          <code>ND_Fabids2</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>1</speciations>
+                        </events>
+                        <clade>
+                          <name>n572</name>
+                          <branch_length>0.87796</branch_length>
+                          <confidence type="unknown">100.0</confidence>
+                          <taxonomy>
+                            <code>Benincaseae</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>1</speciations>
+                          </events>
+                          <clade>
+                            <name>CL08G09340</name>
+                            <branch_length>0.20696</branch_length>
+                            <taxonomy>
+                              <code>CL</code>
+                            </taxonomy>
+                          <taxonomy><code>cla</code></taxonomy></clade>
+                          <clade>
+                            <name>CM00096G00530</name>
+                            <branch_length>0.09223</branch_length>
+                            <taxonomy>
+                              <code>CM</code>
+                            </taxonomy>
+                          <taxonomy><code>cme</code></taxonomy></clade>
+                        </clade>
+                        <clade>
+                          <name>n577</name>
+                          <branch_length>0.36146</branch_length>
+                          <confidence type="unknown">100.0</confidence>
+                          <taxonomy>
+                            <code>Papilionoideae</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>1</speciations>
+                          </events>
+                          <clade>
+                            <name>n575</name>
+                            <branch_length>0.13201</branch_length>
+                            <confidence type="unknown">98.0</confidence>
+                            <taxonomy>
+                              <code>GM</code>
+                            </taxonomy>
+                            <events>
+                              <duplications>1</duplications>
+                            </events>
+                            <clade>
+                              <name>GM06G02181</name>
+                              <branch_length>0.08784</branch_length>
+                              <taxonomy>
+                                <code>GM</code>
+                              </taxonomy>
+                            <taxonomy><code>gma</code></taxonomy></clade>
+                            <clade>
+                              <name>GM04G02080</name>
+                              <branch_length>0.10599</branch_length>
+                              <taxonomy>
+                                <code>GM</code>
+                              </taxonomy>
+                            <taxonomy><code>gma</code></taxonomy></clade>
+                          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property></clade>
+                          <clade>
+                            <name>MT3G115120</name>
+                            <branch_length>0.45262</branch_length>
+                            <taxonomy>
+                              <code>MT</code>
+                            </taxonomy>
+                          <taxonomy><code>mtr</code></taxonomy></clade>
+                        </clade>
+                      </clade>
+                    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+                    <clade>
+                      <name>n596</name>
+                      <branch_length>0.03586</branch_length>
+                      <confidence type="unknown">84.0</confidence>
+                      <taxonomy>
+                        <code>Rosids1</code>
+                      </taxonomy>
+                      <events>
+                        <duplications>1</duplications>
+                      </events>
+                      <clade>
+                        <name>n594</name>
+                        <branch_length>0.05828</branch_length>
+                        <confidence type="unknown">93.0</confidence>
+                        <taxonomy>
+                          <code>Rosids1</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>1</speciations>
+                        </events>
+                        <clade>
+                          <name>n584</name>
+                          <branch_length>0.01945</branch_length>
+                          <confidence type="unknown">48.0</confidence>
+                          <taxonomy>
+                            <code>ND_Malvids1</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>1</speciations>
+                          </events>
+                          <clade>
+                            <name>n582</name>
+                            <branch_length>0.15156</branch_length>
+                            <confidence type="unknown">99.0</confidence>
+                            <taxonomy>
+                              <code>Malvales</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>1</speciations>
+                            </events>
+                            <clade>
+                              <name>GR09G18850</name>
+                              <branch_length>0.3289</branch_length>
+                              <taxonomy>
+                                <code>GR</code>
+                              </taxonomy>
+                            <taxonomy><code>gra</code></taxonomy></clade>
+                            <clade>
+                              <name>TC0008G05520</name>
+                              <branch_length>0.22099</branch_length>
+                              <taxonomy>
+                                <code>TC</code>
+                              </taxonomy>
+                            <taxonomy><code>tca</code></taxonomy></clade>
+                          </clade>
+                          <clade>
+                            <name>CP00026G02120</name>
+                            <branch_length>0.54604</branch_length>
+                            <taxonomy>
+                              <code>CP</code>
+                            </taxonomy>
+                          <taxonomy><code>cpa</code></taxonomy></clade>
+                        </clade>
+                        <clade>
+                          <name>n593</name>
+                          <branch_length>0.17979</branch_length>
+                          <confidence type="unknown">100.0</confidence>
+                          <taxonomy>
+                            <code>Malpighiales</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>1</speciations>
+                          </events>
+                          <clade>
+                            <name>n587</name>
+                            <branch_length>0.19606</branch_length>
+                            <confidence type="unknown">100.0</confidence>
+                            <taxonomy>
+                              <code>PT</code>
+                            </taxonomy>
+                            <events>
+                              <duplications>1</duplications>
+                            </events>
+                            <clade>
+                              <name>PT05G24940</name>
+                              <branch_length>0.17069</branch_length>
+                              <taxonomy>
+                                <code>PT</code>
+                              </taxonomy>
+                            <taxonomy><code>ptr</code></taxonomy></clade>
+                            <clade>
+                              <name>PT02G01170</name>
+                              <branch_length>0.25686</branch_length>
+                              <taxonomy>
+                                <code>PT</code>
+                              </taxonomy>
+                            <taxonomy><code>ptr</code></taxonomy></clade>
+                          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property></clade>
+                          <clade>
+                            <name>n592</name>
+                            <branch_length>0.13169</branch_length>
+                            <confidence type="unknown">99.0</confidence>
+                            <taxonomy>
+                              <code>Euphorbiaceae</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>1</speciations>
+                            </events>
+                            <clade>
+                              <name>n590</name>
+                              <branch_length>0.05815</branch_length>
+                              <confidence type="unknown">95.0</confidence>
+                              <taxonomy>
+                                <code>ME</code>
+                              </taxonomy>
+                              <events>
+                                <duplications>1</duplications>
+                              </events>
+                              <clade>
+                                <name>ME02943G00870</name>
+                                <branch_length>0.2694</branch_length>
+                                <taxonomy>
+                                  <code>ME</code>
+                                </taxonomy>
+                              <taxonomy><code>mes</code></taxonomy></clade>
+                              <clade>
+                                <name>ME06708G00140</name>
+                                <branch_length>0.18961</branch_length>
+                                <taxonomy>
+                                  <code>ME</code>
+                                </taxonomy>
+                              <taxonomy><code>mes</code></taxonomy></clade>
+                            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property></clade>
+                            <clade>
+                              <name>RC30170G06600</name>
+                              <branch_length>0.25236</branch_length>
+                              <taxonomy>
+                                <code>RC</code>
+                              </taxonomy>
+                            <taxonomy><code>rco</code></taxonomy></clade>
+                          </clade>
+                        </clade>
+                      </clade>
+                      <clade>
+                        <name>CS00002G06430</name>
+                        <branch_length>0.4892</branch_length>
+                        <taxonomy>
+                          <code>CS</code>
+                        </taxonomy>
+                      <taxonomy><code>csi</code></taxonomy></clade>
+                    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+                  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+                <clade>
+                  <name>EG0006G30230</name>
+                  <branch_length>0.82331</branch_length>
+                  <taxonomy>
+                    <code>EG</code>
+                  </taxonomy>
+                <taxonomy><code>egr</code></taxonomy></clade>
+              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property></clade>
+              <clade>
+                <name>VV18G00680</name>
+                <branch_length>0.50047</branch_length>
+                <taxonomy>
+                  <code>VV</code>
+                </taxonomy>
+              <taxonomy><code>vvi</code></taxonomy></clade>
+            </clade>
+          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.6923</property></clade>
+        </clade>
+      <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.7667</property></clade>
+  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.8333</property></clade>
+</phylogeny>
+<graphs>
+  <graph type="pie">
+    <name>Duplication</name>
+      <legend show="0">
+        <field>
+           <name>Consistency score</name>
+           <color>0xFF0000</color>
+           <background>0x00FF00</background>
+        </field>         
+     </legend>
+     <data tag="property" ref="duplication consistency score:">
+        <min>0</min>
+        <max>1</max>
+     </data>
+  </graph>
+  <graph type="binary">
+    <name>Speciations</name>
+      <legend show="0">
+        <field>
+           <name>Speciations</name>
+           <color>0x00FF00</color>
+           <shape>circle</shape>
+        </field>         
+     </legend>
+     <data tag="events" ref="speciations">
+     </data>
+  </graph>
+</graphs>
 </phyloxml>
\ No newline at end of file
diff --git a/submissions/labels.xml b/submissions/labels.xml
new file mode 100644
index 0000000..7b3bfc3
--- /dev/null
+++ b/submissions/labels.xml
@@ -0,0 +1,3599 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<phyloxml xmlns="http://www.phyloxml.org" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.00/phyloxml.xsd">
+  <phylogeny rooted="true">
+    <clade>
+      <name>n606</name>
+      <branch_length>0.05772</branch_length>
+      <confidence type="unknown">100.0</confidence>
+      <taxonomy>
+        <code>Angiosperms</code>
+      </taxonomy>
+      <clade>
+        <name>n364</name>
+        <branch_length>0.30545</branch_length>
+        <confidence type="unknown">100.0</confidence>
+        <taxonomy>
+          <code>Angiosperms</code>
+        </taxonomy>
+        <clade>
+          <name>n362</name>
+          <branch_length>0.1586</branch_length>
+          <confidence type="unknown">90.0</confidence>
+          <taxonomy>
+            <code>Angiosperms</code>
+          </taxonomy>
+          <clade>
+            <name>n292</name>
+            <branch_length>0.14002</branch_length>
+            <confidence type="unknown">1.0</confidence>
+            <taxonomy>
+              <code>Monocots</code>
+            </taxonomy>
+            <clade>
+              <name>n290</name>
+              <branch_length>0.9043</branch_length>
+              <confidence type="unknown">100.0</confidence>
+              <taxonomy>
+                <code>Monocots</code>
+              </taxonomy>
+              <clade>
+                <name>ZM04G38950</name>
+                <branch_length>0.18765</branch_length>
+                <taxonomy>
+                  <code>ZM</code>
+                </taxonomy>
+                <taxonomy>
+                  <code>zma</code>
+                </taxonomy>
+                <events>
+                  <speciations>4</speciations>
+                </events>
+                <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+              </clade>
+              <clade>
+                <name>OS02G07850</name>
+                <branch_length>0.31196</branch_length>
+                <taxonomy>
+                  <code>OS</code>
+                </taxonomy>
+                <taxonomy>
+                  <code>osa</code>
+                </taxonomy>
+                <events>
+                  <speciations>3</speciations>
+                </events>
+                <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+              </clade>
+            </clade>
+            <clade>
+              <name>ZM05G04990</name>
+              <branch_length>0.50823</branch_length>
+              <taxonomy>
+                <code>ZM</code>
+              </taxonomy>
+              <taxonomy>
+                <code>zma</code>
+              </taxonomy>
+              <events>
+                <speciations>0</speciations>
+              </events>
+              <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+            </clade>
+            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.5</property>
+          </clade>
+          <clade>
+            <name>n361</name>
+            <branch_length>0.1759</branch_length>
+            <confidence type="unknown">99.0</confidence>
+            <taxonomy>
+              <code>Dicots</code>
+            </taxonomy>
+            <clade>
+              <name>n357</name>
+              <branch_length>0.03278</branch_length>
+              <confidence type="unknown">82.0</confidence>
+              <taxonomy>
+                <code>Dicots</code>
+              </taxonomy>
+              <clade>
+                <name>n355</name>
+                <branch_length>0.02161</branch_length>
+                <confidence type="unknown">89.0</confidence>
+                <taxonomy>
+                  <code>Dicots</code>
+                </taxonomy>
+                <clade>
+                  <name>n345</name>
+                  <branch_length>0.0222</branch_length>
+                  <confidence type="unknown">70.0</confidence>
+                  <taxonomy>
+                    <code>Dicots</code>
+                  </taxonomy>
+                  <clade>
+                    <name>n309</name>
+                    <branch_length>0.0307</branch_length>
+                    <confidence type="unknown">70.0</confidence>
+                    <taxonomy>
+                      <code>Rosids1</code>
+                    </taxonomy>
+                    <clade>
+                      <name>n295</name>
+                      <branch_length>0.02455</branch_length>
+                      <confidence type="unknown">63.0</confidence>
+                      <taxonomy>
+                        <code>ND_Malvids2</code>
+                      </taxonomy>
+                      <clade>
+                        <name>CS00050G00160</name>
+                        <branch_length>0.10482</branch_length>
+                        <taxonomy>
+                          <code>CS</code>
+                        </taxonomy>
+                        <taxonomy>
+                          <code>csi</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>0</speciations>
+                        </events>
+                        <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                      </clade>
+                      <clade>
+                        <name>CP00095G00310</name>
+                        <branch_length>0.19767</branch_length>
+                        <taxonomy>
+                          <code>CP</code>
+                        </taxonomy>
+                        <taxonomy>
+                          <code>cpa</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>0</speciations>
+                        </events>
+                        <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                      </clade>
+                    </clade>
+                    <clade>
+                      <name>n308</name>
+                      <branch_length>0.01554</branch_length>
+                      <confidence type="unknown">80.0</confidence>
+                      <taxonomy>
+                        <code>Rosids1</code>
+                      </taxonomy>
+                      <clade>
+                        <name>n300</name>
+                        <branch_length>0.03234</branch_length>
+                        <confidence type="unknown">72.0</confidence>
+                        <taxonomy>
+                          <code>Rosids1</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n298</name>
+                          <branch_length>0.02265</branch_length>
+                          <confidence type="unknown">80.0</confidence>
+                          <taxonomy>
+                            <code>Fabids</code>
+                          </taxonomy>
+                          <clade>
+                            <name>PT06G07700</name>
+                            <branch_length>0.14693</branch_length>
+                            <taxonomy>
+                              <code>PT</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>ptr</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>2</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                          </clade>
+                          <clade>
+                            <name>LJ4G034970</name>
+                            <branch_length>0.47497</branch_length>
+                            <taxonomy>
+                              <code>LJ</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>lja</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>5</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                          </clade>
+                        </clade>
+                        <clade>
+                          <name>TC0009G18120</name>
+                          <branch_length>0.11801</branch_length>
+                          <taxonomy>
+                            <code>TC</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>tca</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>0</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                        </clade>
+                      </clade>
+                      <clade>
+                        <name>n307</name>
+                        <branch_length>0.06169</branch_length>
+                        <confidence type="unknown">100.0</confidence>
+                        <taxonomy>
+                          <code>Rosaceae</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n305</name>
+                          <branch_length>0.02508</branch_length>
+                          <confidence type="unknown">68.0</confidence>
+                          <taxonomy>
+                            <code>Maloideae</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n303</name>
+                            <branch_length>0.00964</branch_length>
+                            <confidence type="unknown">20.0</confidence>
+                            <taxonomy>
+                              <code>Maloideae</code>
+                            </taxonomy>
+                            <clade>
+                              <name>PPE_004G23710</name>
+                              <branch_length>0.04686</branch_length>
+                              <taxonomy>
+                                <code>PPE</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>ppe</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>0</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                            </clade>
+                            <clade>
+                              <name>MD05G012680</name>
+                              <branch_length>0.11939</branch_length>
+                              <taxonomy>
+                                <code>MD</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>mdo</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>5</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                            </clade>
+                          </clade>
+                          <clade>
+                            <name>MD13G028600</name>
+                            <branch_length>0.40852</branch_length>
+                            <taxonomy>
+                              <code>MD</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>mdo</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>3</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                          </clade>
+                          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.5</property>
+                        </clade>
+                        <clade>
+                          <name>FV4G04120</name>
+                          <branch_length>0.12172</branch_length>
+                          <taxonomy>
+                            <code>FV</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>fve</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>0</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                        </clade>
+                      </clade>
+                      <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                    </clade>
+                    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                  </clade>
+                  <clade>
+                    <name>n344</name>
+                    <branch_length>0.01579</branch_length>
+                    <confidence type="unknown">54.0</confidence>
+                    <taxonomy>
+                      <code>Dicots</code>
+                    </taxonomy>
+                    <clade>
+                      <name>n342</name>
+                      <branch_length>0.01128</branch_length>
+                      <confidence type="unknown">75.0</confidence>
+                      <taxonomy>
+                        <code>Dicots</code>
+                      </taxonomy>
+                      <clade>
+                        <name>n330</name>
+                        <branch_length>0.02456</branch_length>
+                        <confidence type="unknown">56.0</confidence>
+                        <taxonomy>
+                          <code>Dicots</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n328</name>
+                          <branch_length>0.17209</branch_length>
+                          <confidence type="unknown">100.0</confidence>
+                          <taxonomy>
+                            <code>Brassicaceae</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n320</name>
+                            <branch_length>0.09844</branch_length>
+                            <confidence type="unknown">100.0</confidence>
+                            <taxonomy>
+                              <code>Brassicaceae</code>
+                            </taxonomy>
+                            <clade>
+                              <name>n314</name>
+                              <branch_length>0.01791</branch_length>
+                              <confidence type="unknown">86.0</confidence>
+                              <taxonomy>
+                                <code>ND_Brassicaceae1</code>
+                              </taxonomy>
+                              <clade>
+                                <name>n312</name>
+                                <branch_length>0.01967</branch_length>
+                                <confidence type="unknown">38.0</confidence>
+                                <taxonomy>
+                                  <code>BR</code>
+                                </taxonomy>
+                                <clade>
+                                  <name>BR07G01540</name>
+                                  <branch_length>0.14024</branch_length>
+                                  <taxonomy>
+                                    <code>BR</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>bra</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>3</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                                </clade>
+                                <clade>
+                                  <name>BR09G10070</name>
+                                  <branch_length>0.11126</branch_length>
+                                  <taxonomy>
+                                    <code>BR</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>bra</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>4</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                                </clade>
+                                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                              </clade>
+                              <clade>
+                                <name>TP3G32490</name>
+                                <branch_length>0.11837</branch_length>
+                                <taxonomy>
+                                  <code>TP</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>tpa</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>4</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                              </clade>
+                            </clade>
+                            <clade>
+                              <name>n319</name>
+                              <branch_length>0.02181</branch_length>
+                              <confidence type="unknown">66.0</confidence>
+                              <taxonomy>
+                                <code>Camelineae</code>
+                              </taxonomy>
+                              <clade>
+                                <name>n317</name>
+                                <branch_length>0.04971</branch_length>
+                                <confidence type="unknown">99.0</confidence>
+                                <taxonomy>
+                                  <code>Camelineae</code>
+                                </taxonomy>
+                                <clade>
+                                  <name>CRU_003G32080</name>
+                                  <branch_length>0.02153</branch_length>
+                                  <taxonomy>
+                                    <code>CRU</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>cru</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>0</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                                </clade>
+                                <clade>
+                                  <name>AT2G19090</name>
+                                  <branch_length>0.04291</branch_length>
+                                  <taxonomy>
+                                    <code>AT</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>ath</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>5</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                                </clade>
+                              </clade>
+                              <clade>
+                                <name>AL3G40650</name>
+                                <branch_length>0.0463</branch_length>
+                                <taxonomy>
+                                  <code>AL</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>aly</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>1</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                              </clade>
+                              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                            </clade>
+                          </clade>
+                          <clade>
+                            <name>n327</name>
+                            <branch_length>0.10685</branch_length>
+                            <confidence type="unknown">100.0</confidence>
+                            <taxonomy>
+                              <code>Brassicaceae</code>
+                            </taxonomy>
+                            <clade>
+                              <name>n325</name>
+                              <branch_length>0.07367</branch_length>
+                              <confidence type="unknown">94.0</confidence>
+                              <taxonomy>
+                                <code>Brassicaceae</code>
+                              </taxonomy>
+                              <clade>
+                                <name>n323</name>
+                                <branch_length>0.05092</branch_length>
+                                <confidence type="unknown">60.0</confidence>
+                                <taxonomy>
+                                  <code>Brassicaceae</code>
+                                </taxonomy>
+                                <clade>
+                                  <name>AT4G30130</name>
+                                  <branch_length>0.14431</branch_length>
+                                  <taxonomy>
+                                    <code>AT</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>ath</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>3</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                                </clade>
+                                <clade>
+                                  <name>TP7G27980</name>
+                                  <branch_length>0.1796</branch_length>
+                                  <taxonomy>
+                                    <code>TP</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>tpa</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>3</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                                </clade>
+                              </clade>
+                              <clade>
+                                <name>AL7G11480</name>
+                                <branch_length>0.03396</branch_length>
+                                <taxonomy>
+                                  <code>AL</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>aly</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>2</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                              </clade>
+                              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                            </clade>
+                            <clade>
+                              <name>BR01G07300</name>
+                              <branch_length>0.23615</branch_length>
+                              <taxonomy>
+                                <code>BR</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>bra</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>4</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                            </clade>
+                            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                          </clade>
+                          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.8</property>
+                        </clade>
+                        <clade>
+                          <name>BV8G06180</name>
+                          <branch_length>0.27962</branch_length>
+                          <taxonomy>
+                            <code>BV</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>bvu</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>0</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                        </clade>
+                      </clade>
+                      <clade>
+                        <name>n341</name>
+                        <branch_length>0.0877</branch_length>
+                        <confidence type="unknown">100.0</confidence>
+                        <taxonomy>
+                          <code>Papilionoideae</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n335</name>
+                          <branch_length>0.05465</branch_length>
+                          <confidence type="unknown">99.0</confidence>
+                          <taxonomy>
+                            <code>Papilionoideae</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n333</name>
+                            <branch_length>0.07296</branch_length>
+                            <confidence type="unknown">99.0</confidence>
+                            <taxonomy>
+                              <code>GM</code>
+                            </taxonomy>
+                            <clade>
+                              <name>GM15G17710</name>
+                              <branch_length>0.05105</branch_length>
+                              <taxonomy>
+                                <code>GM</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>gma</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>0</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                            </clade>
+                            <clade>
+                              <name>GM09G06480</name>
+                              <branch_length>0.0561</branch_length>
+                              <taxonomy>
+                                <code>GM</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>gma</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>0</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                            </clade>
+                            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                          </clade>
+                          <clade>
+                            <name>MT2G036920</name>
+                            <branch_length>0.15216</branch_length>
+                            <taxonomy>
+                              <code>MT</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>mtr</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>1</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                          </clade>
+                        </clade>
+                        <clade>
+                          <name>n340</name>
+                          <branch_length>0.03968</branch_length>
+                          <confidence type="unknown">97.0</confidence>
+                          <taxonomy>
+                            <code>Papilionoideae</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n338</name>
+                            <branch_length>0.06155</branch_length>
+                            <confidence type="unknown">99.0</confidence>
+                            <taxonomy>
+                              <code>GM</code>
+                            </taxonomy>
+                            <clade>
+                              <name>GM17G06810</name>
+                              <branch_length>0.07395</branch_length>
+                              <taxonomy>
+                                <code>GM</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>gma</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>1</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                            </clade>
+                            <clade>
+                              <name>GM13G00650</name>
+                              <branch_length>0.06301</branch_length>
+                              <taxonomy>
+                                <code>GM</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>gma</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>5</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                            </clade>
+                            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                          </clade>
+                          <clade>
+                            <name>MT4G127620</name>
+                            <branch_length>0.26455</branch_length>
+                            <taxonomy>
+                              <code>MT</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>mtr</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>5</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                          </clade>
+                        </clade>
+                        <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                      </clade>
+                      <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                    </clade>
+                    <clade>
+                      <name>GR13G24690</name>
+                      <branch_length>0.25387</branch_length>
+                      <taxonomy>
+                        <code>GR</code>
+                      </taxonomy>
+                      <taxonomy>
+                        <code>gra</code>
+                      </taxonomy>
+                      <events>
+                        <speciations>3</speciations>
+                      </events>
+                      <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                    </clade>
+                    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                  </clade>
+                  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                </clade>
+                <clade>
+                  <name>n354</name>
+                  <branch_length>0.02848</branch_length>
+                  <confidence type="unknown">88.0</confidence>
+                  <taxonomy>
+                    <code>Rosids1</code>
+                  </taxonomy>
+                  <clade>
+                    <name>n348</name>
+                    <branch_length>0.08522</branch_length>
+                    <confidence type="unknown">100.0</confidence>
+                    <taxonomy>
+                      <code>Euphorbiaceae</code>
+                    </taxonomy>
+                    <clade>
+                      <name>RC29462G00150</name>
+                      <branch_length>0.20182</branch_length>
+                      <taxonomy>
+                        <code>RC</code>
+                      </taxonomy>
+                      <taxonomy>
+                        <code>rco</code>
+                      </taxonomy>
+                      <events>
+                        <speciations>1</speciations>
+                      </events>
+                      <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                    </clade>
+                    <clade>
+                      <name>ME06616G00030</name>
+                      <branch_length>0.13042</branch_length>
+                      <taxonomy>
+                        <code>ME</code>
+                      </taxonomy>
+                      <taxonomy>
+                        <code>mes</code>
+                      </taxonomy>
+                      <events>
+                        <speciations>0</speciations>
+                      </events>
+                      <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                    </clade>
+                  </clade>
+                  <clade>
+                    <name>n353</name>
+                    <branch_length>0.03292</branch_length>
+                    <confidence type="unknown">87.0</confidence>
+                    <taxonomy>
+                      <code>Rosids1</code>
+                    </taxonomy>
+                    <clade>
+                      <name>n351</name>
+                      <branch_length>0.13045</branch_length>
+                      <confidence type="unknown">100.0</confidence>
+                      <taxonomy>
+                        <code>Benincaseae</code>
+                      </taxonomy>
+                      <clade>
+                        <name>CL11G06180</name>
+                        <branch_length>0.06165</branch_length>
+                        <taxonomy>
+                          <code>CL</code>
+                        </taxonomy>
+                        <taxonomy>
+                          <code>cla</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>0</speciations>
+                        </events>
+                        <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                      </clade>
+                      <clade>
+                        <name>CM00003G01080</name>
+                        <branch_length>0.0511</branch_length>
+                        <taxonomy>
+                          <code>CM</code>
+                        </taxonomy>
+                        <taxonomy>
+                          <code>cme</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>4</speciations>
+                        </events>
+                        <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                      </clade>
+                    </clade>
+                    <clade>
+                      <name>EG0003G17730</name>
+                      <branch_length>0.24612</branch_length>
+                      <taxonomy>
+                        <code>EG</code>
+                      </taxonomy>
+                      <taxonomy>
+                        <code>egr</code>
+                      </taxonomy>
+                      <events>
+                        <speciations>1</speciations>
+                      </events>
+                      <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                    </clade>
+                  </clade>
+                  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                </clade>
+                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+              </clade>
+              <clade>
+                <name>VV11G00760</name>
+                <branch_length>0.21326</branch_length>
+                <taxonomy>
+                  <code>VV</code>
+                </taxonomy>
+                <taxonomy>
+                  <code>vvi</code>
+                </taxonomy>
+                <events>
+                  <speciations>0</speciations>
+                </events>
+                <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+              </clade>
+              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+            </clade>
+            <clade>
+              <name>n360</name>
+              <branch_length>0.17838</branch_length>
+              <confidence type="unknown">100.0</confidence>
+              <taxonomy>
+                <code>Solanum</code>
+              </taxonomy>
+              <clade>
+                <name>SL07G047830</name>
+                <branch_length>0.03694</branch_length>
+                <taxonomy>
+                  <code>SL</code>
+                </taxonomy>
+                <taxonomy>
+                  <code>sly</code>
+                </taxonomy>
+                <events>
+                  <speciations>3</speciations>
+                </events>
+                <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+              </clade>
+              <clade>
+                <name>ST07G017960</name>
+                <branch_length>0.03641</branch_length>
+                <taxonomy>
+                  <code>ST</code>
+                </taxonomy>
+                <taxonomy>
+                  <code>stu</code>
+                </taxonomy>
+                <events>
+                  <speciations>3</speciations>
+                </events>
+                <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+              </clade>
+            </clade>
+            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+          </clade>
+        </clade>
+        <clade>
+          <name>ATR_00025G02160</name>
+          <branch_length>0.34948</branch_length>
+          <taxonomy>
+            <code>AT</code>
+          </taxonomy>
+          <taxonomy>
+            <code>atr</code>
+          </taxonomy>
+          <events>
+            <speciations>1</speciations>
+          </events>
+          <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+        </clade>
+        <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.037</property>
+      </clade>
+      <clade>
+        <name>n605</name>
+        <branch_length>0.30895</branch_length>
+        <confidence type="unknown">99.0</confidence>
+        <taxonomy>
+          <code>Angiosperms</code>
+        </taxonomy>
+        <clade>
+          <name>n459</name>
+          <branch_length>0.11709</branch_length>
+          <confidence type="unknown">79.0</confidence>
+          <taxonomy>
+            <code>Angiosperms</code>
+          </taxonomy>
+          <clade>
+            <name>n457</name>
+            <branch_length>0.1268</branch_length>
+            <confidence type="unknown">97.0</confidence>
+            <taxonomy>
+              <code>Angiosperms</code>
+            </taxonomy>
+            <clade>
+              <name>n449</name>
+              <branch_length>0.07374</branch_length>
+              <confidence type="unknown">92.0</confidence>
+              <taxonomy>
+                <code>Dicots</code>
+              </taxonomy>
+              <clade>
+                <name>n383</name>
+                <branch_length>0.20254</branch_length>
+                <confidence type="unknown">100.0</confidence>
+                <taxonomy>
+                  <code>Rosids</code>
+                </taxonomy>
+                <clade>
+                  <name>n381</name>
+                  <branch_length>0.11978</branch_length>
+                  <confidence type="unknown">93.0</confidence>
+                  <taxonomy>
+                    <code>Rosids1</code>
+                  </taxonomy>
+                  <clade>
+                    <name>n377</name>
+                    <branch_length>0.0589</branch_length>
+                    <confidence type="unknown">66.0</confidence>
+                    <taxonomy>
+                      <code>Rosids1</code>
+                    </taxonomy>
+                    <clade>
+                      <name>n375</name>
+                      <branch_length>0.11676</branch_length>
+                      <confidence type="unknown">91.0</confidence>
+                      <taxonomy>
+                        <code>Brassicales</code>
+                      </taxonomy>
+                      <clade>
+                        <name>n373</name>
+                        <branch_length>0.74918</branch_length>
+                        <confidence type="unknown">100.0</confidence>
+                        <taxonomy>
+                          <code>Brassicaceae</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n369</name>
+                          <branch_length>0.04325</branch_length>
+                          <confidence type="unknown">81.0</confidence>
+                          <taxonomy>
+                            <code>Camelineae</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n367</name>
+                            <branch_length>0.06905</branch_length>
+                            <confidence type="unknown">94.0</confidence>
+                            <taxonomy>
+                              <code>Arabidopsis</code>
+                            </taxonomy>
+                            <clade>
+                              <name>AL8G19740</name>
+                              <branch_length>0.06254</branch_length>
+                              <taxonomy>
+                                <code>AL</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>aly</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>3</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                            </clade>
+                            <clade>
+                              <name>AT5G54480</name>
+                              <branch_length>0.12498</branch_length>
+                              <taxonomy>
+                                <code>AT</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>ath</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>0</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                            </clade>
+                          </clade>
+                          <clade>
+                            <name>CRU_001G27430</name>
+                            <branch_length>0.16235</branch_length>
+                            <taxonomy>
+                              <code>CRU</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>cru</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>3</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                          </clade>
+                        </clade>
+                        <clade>
+                          <name>n372</name>
+                          <branch_length>0.12495</branch_length>
+                          <confidence type="unknown">98.0</confidence>
+                          <taxonomy>
+                            <code>ND_Brassicaceae1</code>
+                          </taxonomy>
+                          <clade>
+                            <name>BR10G08040</name>
+                            <branch_length>0.17957</branch_length>
+                            <taxonomy>
+                              <code>BR</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>bra</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>3</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                          </clade>
+                          <clade>
+                            <name>TP6G16450</name>
+                            <branch_length>0.22977</branch_length>
+                            <taxonomy>
+                              <code>TP</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>tpa</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>2</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                          </clade>
+                        </clade>
+                      </clade>
+                      <clade>
+                        <name>CP00037G00320</name>
+                        <branch_length>0.48211</branch_length>
+                        <taxonomy>
+                          <code>CP</code>
+                        </taxonomy>
+                        <taxonomy>
+                          <code>cpa</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>0</speciations>
+                        </events>
+                        <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                      </clade>
+                    </clade>
+                    <clade>
+                      <name>PT05G07020</name>
+                      <branch_length>0.54356</branch_length>
+                      <taxonomy>
+                        <code>PT</code>
+                      </taxonomy>
+                      <taxonomy>
+                        <code>ptr</code>
+                      </taxonomy>
+                      <events>
+                        <speciations>5</speciations>
+                      </events>
+                      <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                    </clade>
+                  </clade>
+                  <clade>
+                    <name>n380</name>
+                    <branch_length>0.07243</branch_length>
+                    <confidence type="unknown">56.0</confidence>
+                    <taxonomy>
+                      <code>Rosids1</code>
+                    </taxonomy>
+                    <clade>
+                      <name>MT3G096950</name>
+                      <branch_length>0.86208</branch_length>
+                      <taxonomy>
+                        <code>MT</code>
+                      </taxonomy>
+                      <taxonomy>
+                        <code>mtr</code>
+                      </taxonomy>
+                      <events>
+                        <speciations>5</speciations>
+                      </events>
+                      <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                    </clade>
+                    <clade>
+                      <name>TC0001G13710</name>
+                      <branch_length>0.40171</branch_length>
+                      <taxonomy>
+                        <code>TC</code>
+                      </taxonomy>
+                      <taxonomy>
+                        <code>tca</code>
+                      </taxonomy>
+                      <events>
+                        <speciations>4</speciations>
+                      </events>
+                      <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                    </clade>
+                  </clade>
+                  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                </clade>
+                <clade>
+                  <name>VV07G07430</name>
+                  <branch_length>0.4773</branch_length>
+                  <taxonomy>
+                    <code>VV</code>
+                  </taxonomy>
+                  <taxonomy>
+                    <code>vvi</code>
+                  </taxonomy>
+                  <events>
+                    <speciations>0</speciations>
+                  </events>
+                  <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                </clade>
+              </clade>
+              <clade>
+                <name>n448</name>
+                <branch_length>0.03325</branch_length>
+                <confidence type="unknown">61.0</confidence>
+                <taxonomy>
+                  <code>Dicots</code>
+                </taxonomy>
+                <clade>
+                  <name>n446</name>
+                  <branch_length>0.08892</branch_length>
+                  <confidence type="unknown">99.0</confidence>
+                  <taxonomy>
+                    <code>ND_Dicots</code>
+                  </taxonomy>
+                  <clade>
+                    <name>n408</name>
+                    <branch_length>0.02784</branch_length>
+                    <confidence type="unknown">3.0</confidence>
+                    <taxonomy>
+                      <code>Rosids1</code>
+                    </taxonomy>
+                    <clade>
+                      <name>n406</name>
+                      <branch_length>0.02503</branch_length>
+                      <confidence type="unknown">75.0</confidence>
+                      <taxonomy>
+                        <code>Rosids1</code>
+                      </taxonomy>
+                      <clade>
+                        <name>n386</name>
+                        <branch_length>0.21607</branch_length>
+                        <confidence type="unknown">100.0</confidence>
+                        <taxonomy>
+                          <code>Benincaseae</code>
+                        </taxonomy>
+                        <clade>
+                          <name>CL11G09920</name>
+                          <branch_length>0.05208</branch_length>
+                          <taxonomy>
+                            <code>CL</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>cla</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>3</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                        </clade>
+                        <clade>
+                          <name>CM00013G01300</name>
+                          <branch_length>0.05046</branch_length>
+                          <taxonomy>
+                            <code>CM</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>cme</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>0</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                        </clade>
+                      </clade>
+                      <clade>
+                        <name>n405</name>
+                        <branch_length>0.16993</branch_length>
+                        <confidence type="unknown">100.0</confidence>
+                        <taxonomy>
+                          <code>Brassicaceae</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n395</name>
+                          <branch_length>0.04398</branch_length>
+                          <confidence type="unknown">95.0</confidence>
+                          <taxonomy>
+                            <code>Brassicaceae</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n391</name>
+                            <branch_length>0.02671</branch_length>
+                            <confidence type="unknown">92.0</confidence>
+                            <taxonomy>
+                              <code>Camelineae</code>
+                            </taxonomy>
+                            <clade>
+                              <name>n389</name>
+                              <branch_length>0.02732</branch_length>
+                              <confidence type="unknown">97.0</confidence>
+                              <taxonomy>
+                                <code>Arabidopsis</code>
+                              </taxonomy>
+                              <clade>
+                                <name>AL1G23010</name>
+                                <branch_length>0.01489</branch_length>
+                                <taxonomy>
+                                  <code>AL</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>aly</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>0</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                              </clade>
+                              <clade>
+                                <name>AT1G21740</name>
+                                <branch_length>0.02116</branch_length>
+                                <taxonomy>
+                                  <code>AT</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>ath</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>2</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                              </clade>
+                            </clade>
+                            <clade>
+                              <name>CRU_001G20310</name>
+                              <branch_length>0.03004</branch_length>
+                              <taxonomy>
+                                <code>CRU</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>cru</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>1</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                            </clade>
+                          </clade>
+                          <clade>
+                            <name>n394</name>
+                            <branch_length>0.02184</branch_length>
+                            <confidence type="unknown">77.0</confidence>
+                            <taxonomy>
+                              <code>ND_Brassicaceae1</code>
+                            </taxonomy>
+                            <clade>
+                              <name>BR06G15900</name>
+                              <branch_length>0.1221</branch_length>
+                              <taxonomy>
+                                <code>BR</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>bra</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>2</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                            </clade>
+                            <clade>
+                              <name>TP1G19300</name>
+                              <branch_length>0.05237</branch_length>
+                              <taxonomy>
+                                <code>TP</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>tpa</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>3</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                            </clade>
+                          </clade>
+                        </clade>
+                        <clade>
+                          <name>n404</name>
+                          <branch_length>0.06985</branch_length>
+                          <confidence type="unknown">99.0</confidence>
+                          <taxonomy>
+                            <code>Brassicaceae</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n400</name>
+                            <branch_length>0.02951</branch_length>
+                            <confidence type="unknown">94.0</confidence>
+                            <taxonomy>
+                              <code>Camelineae</code>
+                            </taxonomy>
+                            <clade>
+                              <name>n398</name>
+                              <branch_length>0.02418</branch_length>
+                              <confidence type="unknown">95.0</confidence>
+                              <taxonomy>
+                                <code>Arabidopsis</code>
+                              </taxonomy>
+                              <clade>
+                                <name>AT1G77500</name>
+                                <branch_length>0.09653</branch_length>
+                                <taxonomy>
+                                  <code>AT</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>ath</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>5</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                              </clade>
+                              <clade>
+                                <name>AL2G26460</name>
+                                <branch_length>0.04458</branch_length>
+                                <taxonomy>
+                                  <code>AL</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>aly</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>1</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                              </clade>
+                            </clade>
+                            <clade>
+                              <name>CRU_002G23040</name>
+                              <branch_length>0.05414</branch_length>
+                              <taxonomy>
+                                <code>CRU</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>cru</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>1</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                            </clade>
+                          </clade>
+                          <clade>
+                            <name>n403</name>
+                            <branch_length>0.07677</branch_length>
+                            <confidence type="unknown">99.0</confidence>
+                            <taxonomy>
+                              <code>ND_Brassicaceae1</code>
+                            </taxonomy>
+                            <clade>
+                              <name>BR07G32490</name>
+                              <branch_length>0.21894</branch_length>
+                              <taxonomy>
+                                <code>BR</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>bra</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>0</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                            </clade>
+                            <clade>
+                              <name>TP5G32660</name>
+                              <branch_length>0.09264</branch_length>
+                              <taxonomy>
+                                <code>TP</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>tpa</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>2</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                            </clade>
+                          </clade>
+                        </clade>
+                        <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.6667</property>
+                      </clade>
+                    </clade>
+                    <clade>
+                      <name>EG0006G32470</name>
+                      <branch_length>0.45205</branch_length>
+                      <taxonomy>
+                        <code>EG</code>
+                      </taxonomy>
+                      <taxonomy>
+                        <code>egr</code>
+                      </taxonomy>
+                      <events>
+                        <speciations>4</speciations>
+                      </events>
+                      <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                    </clade>
+                    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                  </clade>
+                  <clade>
+                    <name>n445</name>
+                    <branch_length>0.01378</branch_length>
+                    <confidence type="unknown">81.0</confidence>
+                    <taxonomy>
+                      <code>ND_Dicots</code>
+                    </taxonomy>
+                    <clade>
+                      <name>n423</name>
+                      <branch_length>0.03733</branch_length>
+                      <confidence type="unknown">96.0</confidence>
+                      <taxonomy>
+                        <code>ND_Fabids2</code>
+                      </taxonomy>
+                      <clade>
+                        <name>n415</name>
+                        <branch_length>0.19945</branch_length>
+                        <confidence type="unknown">100.0</confidence>
+                        <taxonomy>
+                          <code>Papilionoideae</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n413</name>
+                          <branch_length>0.01219</branch_length>
+                          <confidence type="unknown">33.0</confidence>
+                          <taxonomy>
+                            <code>Papilionoideae</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n411</name>
+                            <branch_length>0.08429</branch_length>
+                            <confidence type="unknown">100.0</confidence>
+                            <taxonomy>
+                              <code>GM</code>
+                            </taxonomy>
+                            <clade>
+                              <name>GM04G42710</name>
+                              <branch_length>0.09419</branch_length>
+                              <taxonomy>
+                                <code>GM</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>gma</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>1</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                            </clade>
+                            <clade>
+                              <name>GM06G12070</name>
+                              <branch_length>0.03247</branch_length>
+                              <taxonomy>
+                                <code>GM</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>gma</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>5</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                            </clade>
+                            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                          </clade>
+                          <clade>
+                            <name>LJ1G011780</name>
+                            <branch_length>0.18293</branch_length>
+                            <taxonomy>
+                              <code>LJ</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>lja</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>5</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                          </clade>
+                        </clade>
+                        <clade>
+                          <name>MT3G088190</name>
+                          <branch_length>0.14101</branch_length>
+                          <taxonomy>
+                            <code>MT</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>mtr</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>0</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                        </clade>
+                        <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                      </clade>
+                      <clade>
+                        <name>n422</name>
+                        <branch_length>0.0696</branch_length>
+                        <confidence type="unknown">99.0</confidence>
+                        <taxonomy>
+                          <code>Rosaceae</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n420</name>
+                          <branch_length>0.04726</branch_length>
+                          <confidence type="unknown">95.0</confidence>
+                          <taxonomy>
+                            <code>Maloideae</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n418</name>
+                            <branch_length>0.02953</branch_length>
+                            <confidence type="unknown">75.0</confidence>
+                            <taxonomy>
+                              <code>MD</code>
+                            </taxonomy>
+                            <clade>
+                              <name>MD00G501210</name>
+                              <branch_length>0.13319</branch_length>
+                              <taxonomy>
+                                <code>MD</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>mdo</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>5</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                            </clade>
+                            <clade>
+                              <name>MD08G016360</name>
+                              <branch_length>0.07462</branch_length>
+                              <taxonomy>
+                                <code>MD</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>mdo</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>4</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                            </clade>
+                            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                          </clade>
+                          <clade>
+                            <name>PPE_001G49880</name>
+                            <branch_length>0.04289</branch_length>
+                            <taxonomy>
+                              <code>PPE</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>ppe</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>4</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                          </clade>
+                        </clade>
+                        <clade>
+                          <name>FV2G29620</name>
+                          <branch_length>0.19295</branch_length>
+                          <taxonomy>
+                            <code>FV</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>fve</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>1</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                        </clade>
+                      </clade>
+                    </clade>
+                    <clade>
+                      <name>n444</name>
+                      <branch_length>0.01106</branch_length>
+                      <confidence type="unknown">82.0</confidence>
+                      <taxonomy>
+                        <code>ND_Dicots</code>
+                      </taxonomy>
+                      <clade>
+                        <name>n438</name>
+                        <branch_length>0.01194</branch_length>
+                        <confidence type="unknown">60.0</confidence>
+                        <taxonomy>
+                          <code>Rosids</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n436</name>
+                          <branch_length>0.01612</branch_length>
+                          <confidence type="unknown">69.0</confidence>
+                          <taxonomy>
+                            <code>Rosids1</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n434</name>
+                            <branch_length>0.0221</branch_length>
+                            <confidence type="unknown">47.0</confidence>
+                            <taxonomy>
+                              <code>Rosids1</code>
+                            </taxonomy>
+                            <clade>
+                              <name>n430</name>
+                              <branch_length>0.06957</branch_length>
+                              <confidence type="unknown">99.0</confidence>
+                              <taxonomy>
+                                <code>Malpighiales</code>
+                              </taxonomy>
+                              <clade>
+                                <name>n426</name>
+                                <branch_length>0.09321</branch_length>
+                                <confidence type="unknown">97.0</confidence>
+                                <taxonomy>
+                                  <code>ME</code>
+                                </taxonomy>
+                                <clade>
+                                  <name>ME04314G00130</name>
+                                  <branch_length>0.62361</branch_length>
+                                  <taxonomy>
+                                    <code>ME</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>mes</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>2</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                                </clade>
+                                <clade>
+                                  <name>ME07238G00350</name>
+                                  <branch_length>0.0634</branch_length>
+                                  <taxonomy>
+                                    <code>ME</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>mes</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>2</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                                </clade>
+                                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                              </clade>
+                              <clade>
+                                <name>n429</name>
+                                <branch_length>0.12123</branch_length>
+                                <confidence type="unknown">100.0</confidence>
+                                <taxonomy>
+                                  <code>PT</code>
+                                </taxonomy>
+                                <clade>
+                                  <name>PT05G17910</name>
+                                  <branch_length>0.09879</branch_length>
+                                  <taxonomy>
+                                    <code>PT</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>ptr</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>5</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                                </clade>
+                                <clade>
+                                  <name>PT02G08200</name>
+                                  <branch_length>0.05942</branch_length>
+                                  <taxonomy>
+                                    <code>PT</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>ptr</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>2</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                                </clade>
+                                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                              </clade>
+                            </clade>
+                            <clade>
+                              <name>n433</name>
+                              <branch_length>0.08637</branch_length>
+                              <confidence type="unknown">100.0</confidence>
+                              <taxonomy>
+                                <code>Malvales</code>
+                              </taxonomy>
+                              <clade>
+                                <name>TC0008G12380</name>
+                                <branch_length>0.06206</branch_length>
+                                <taxonomy>
+                                  <code>TC</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>tca</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>3</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                              </clade>
+                              <clade>
+                                <name>GR09G24680</name>
+                                <branch_length>0.08913</branch_length>
+                                <taxonomy>
+                                  <code>GR</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>gra</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>1</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                              </clade>
+                            </clade>
+                          </clade>
+                          <clade>
+                            <name>CP00064G00980</name>
+                            <branch_length>0.19465</branch_length>
+                            <taxonomy>
+                              <code>CP</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>cpa</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>1</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                          </clade>
+                          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                        </clade>
+                        <clade>
+                          <name>VV18G01960</name>
+                          <branch_length>0.25111</branch_length>
+                          <taxonomy>
+                            <code>VV</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>vvi</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>1</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                        </clade>
+                      </clade>
+                      <clade>
+                        <name>n443</name>
+                        <branch_length>0.04374</branch_length>
+                        <confidence type="unknown">95.0</confidence>
+                        <taxonomy>
+                          <code>ND_Dicots</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n441</name>
+                          <branch_length>0.29974</branch_length>
+                          <confidence type="unknown">100.0</confidence>
+                          <taxonomy>
+                            <code>Solanum</code>
+                          </taxonomy>
+                          <clade>
+                            <name>ST06G019360</name>
+                            <branch_length>0.01477</branch_length>
+                            <taxonomy>
+                              <code>ST</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>stu</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>5</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                          </clade>
+                          <clade>
+                            <name>SL06G060270</name>
+                            <branch_length>0.01083</branch_length>
+                            <taxonomy>
+                              <code>SL</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>sly</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>2</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                          </clade>
+                        </clade>
+                        <clade>
+                          <name>CS00004G00610</name>
+                          <branch_length>0.16418</branch_length>
+                          <taxonomy>
+                            <code>CS</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>csi</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>4</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                        </clade>
+                      </clade>
+                      <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                    </clade>
+                    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                  </clade>
+                  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                </clade>
+                <clade>
+                  <name>BV1G09480</name>
+                  <branch_length>0.4475</branch_length>
+                  <taxonomy>
+                    <code>BV</code>
+                  </taxonomy>
+                  <taxonomy>
+                    <code>bvu</code>
+                  </taxonomy>
+                  <events>
+                    <speciations>1</speciations>
+                  </events>
+                  <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                </clade>
+              </clade>
+              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.36</property>
+            </clade>
+            <clade>
+              <name>n456</name>
+              <branch_length>0.19358</branch_length>
+              <confidence type="unknown">99.0</confidence>
+              <taxonomy>
+                <code>Monocots</code>
+              </taxonomy>
+              <clade>
+                <name>n452</name>
+                <branch_length>0.38637</branch_length>
+                <confidence type="unknown">100.0</confidence>
+                <taxonomy>
+                  <code>Monocots</code>
+                </taxonomy>
+                <clade>
+                  <name>ZM06G24570</name>
+                  <branch_length>0.13269</branch_length>
+                  <taxonomy>
+                    <code>ZM</code>
+                  </taxonomy>
+                  <taxonomy>
+                    <code>zma</code>
+                  </taxonomy>
+                  <events>
+                    <speciations>4</speciations>
+                  </events>
+                  <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                </clade>
+                <clade>
+                  <name>OS05G35070</name>
+                  <branch_length>0.07981</branch_length>
+                  <taxonomy>
+                    <code>OS</code>
+                  </taxonomy>
+                  <taxonomy>
+                    <code>osa</code>
+                  </taxonomy>
+                  <events>
+                    <speciations>0</speciations>
+                  </events>
+                  <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                </clade>
+              </clade>
+              <clade>
+                <name>n455</name>
+                <branch_length>0.45727</branch_length>
+                <confidence type="unknown">100.0</confidence>
+                <taxonomy>
+                  <code>Monocots</code>
+                </taxonomy>
+                <clade>
+                  <name>ZM08G27480</name>
+                  <branch_length>0.3039</branch_length>
+                  <taxonomy>
+                    <code>ZM</code>
+                  </taxonomy>
+                  <taxonomy>
+                    <code>zma</code>
+                  </taxonomy>
+                  <events>
+                    <speciations>1</speciations>
+                  </events>
+                  <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                </clade>
+                <clade>
+                  <name>OS01G72970</name>
+                  <branch_length>0.27997</branch_length>
+                  <taxonomy>
+                    <code>OS</code>
+                  </taxonomy>
+                  <taxonomy>
+                    <code>osa</code>
+                  </taxonomy>
+                  <events>
+                    <speciations>2</speciations>
+                  </events>
+                  <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                </clade>
+              </clade>
+              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+            </clade>
+          </clade>
+          <clade>
+            <name>ATR_00054G00640</name>
+            <branch_length>0.42436</branch_length>
+            <taxonomy>
+              <code>AT</code>
+            </taxonomy>
+            <taxonomy>
+              <code>atr</code>
+            </taxonomy>
+            <events>
+              <speciations>2</speciations>
+            </events>
+            <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+          </clade>
+          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.0385</property>
+        </clade>
+        <clade>
+          <name>n604</name>
+          <branch_length>0.1408</branch_length>
+          <confidence type="unknown">98.0</confidence>
+          <taxonomy>
+            <code>Angiosperms</code>
+          </taxonomy>
+          <clade>
+            <name>n476</name>
+            <branch_length>0.08028</branch_length>
+            <confidence type="unknown">80.0</confidence>
+            <taxonomy>
+              <code>Monocots</code>
+            </taxonomy>
+            <clade>
+              <name>n468</name>
+              <branch_length>0.45703</branch_length>
+              <confidence type="unknown">100.0</confidence>
+              <taxonomy>
+                <code>Monocots</code>
+              </taxonomy>
+              <clade>
+                <name>n466</name>
+                <branch_length>0.06144</branch_length>
+                <confidence type="unknown">46.0</confidence>
+                <taxonomy>
+                  <code>Monocots</code>
+                </taxonomy>
+                <clade>
+                  <name>n464</name>
+                  <branch_length>0.1713</branch_length>
+                  <confidence type="unknown">100.0</confidence>
+                  <taxonomy>
+                    <code>Monocots</code>
+                  </taxonomy>
+                  <clade>
+                    <name>n462</name>
+                    <branch_length>0.11715</branch_length>
+                    <confidence type="unknown">100.0</confidence>
+                    <taxonomy>
+                      <code>ZM</code>
+                    </taxonomy>
+                    <clade>
+                      <name>ZM10G22410</name>
+                      <branch_length>0.10684</branch_length>
+                      <taxonomy>
+                        <code>ZM</code>
+                      </taxonomy>
+                      <taxonomy>
+                        <code>zma</code>
+                      </taxonomy>
+                      <events>
+                        <speciations>3</speciations>
+                      </events>
+                      <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                    </clade>
+                    <clade>
+                      <name>ZM02G07100</name>
+                      <branch_length>0.07155</branch_length>
+                      <taxonomy>
+                        <code>ZM</code>
+                      </taxonomy>
+                      <taxonomy>
+                        <code>zma</code>
+                      </taxonomy>
+                      <events>
+                        <speciations>4</speciations>
+                      </events>
+                      <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                    </clade>
+                    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                  </clade>
+                  <clade>
+                    <name>OS04G47480</name>
+                    <branch_length>0.25951</branch_length>
+                    <taxonomy>
+                      <code>OS</code>
+                    </taxonomy>
+                    <taxonomy>
+                      <code>osa</code>
+                    </taxonomy>
+                    <events>
+                      <speciations>1</speciations>
+                    </events>
+                    <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                  </clade>
+                </clade>
+                <clade>
+                  <name>ZM05G36150</name>
+                  <branch_length>0.16721</branch_length>
+                  <taxonomy>
+                    <code>ZM</code>
+                  </taxonomy>
+                  <taxonomy>
+                    <code>zma</code>
+                  </taxonomy>
+                  <events>
+                    <speciations>5</speciations>
+                  </events>
+                  <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                </clade>
+                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.5</property>
+              </clade>
+              <clade>
+                <name>OS02G44900</name>
+                <branch_length>0.29325</branch_length>
+                <taxonomy>
+                  <code>OS</code>
+                </taxonomy>
+                <taxonomy>
+                  <code>osa</code>
+                </taxonomy>
+                <events>
+                  <speciations>2</speciations>
+                </events>
+                <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+              </clade>
+              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.5</property>
+            </clade>
+            <clade>
+              <name>n475</name>
+              <branch_length>0.3422</branch_length>
+              <confidence type="unknown">100.0</confidence>
+              <taxonomy>
+                <code>Monocots</code>
+              </taxonomy>
+              <clade>
+                <name>n471</name>
+                <branch_length>0.15685</branch_length>
+                <confidence type="unknown">100.0</confidence>
+                <taxonomy>
+                  <code>ZM</code>
+                </taxonomy>
+                <clade>
+                  <name>ZM07G21570</name>
+                  <branch_length>0.05584</branch_length>
+                  <taxonomy>
+                    <code>ZM</code>
+                  </taxonomy>
+                  <taxonomy>
+                    <code>zma</code>
+                  </taxonomy>
+                  <events>
+                    <speciations>2</speciations>
+                  </events>
+                  <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                </clade>
+                <clade>
+                  <name>ZM02G34610</name>
+                  <branch_length>0.05087</branch_length>
+                  <taxonomy>
+                    <code>ZM</code>
+                  </taxonomy>
+                  <taxonomy>
+                    <code>zma</code>
+                  </taxonomy>
+                  <events>
+                    <speciations>4</speciations>
+                  </events>
+                  <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                </clade>
+                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+              </clade>
+              <clade>
+                <name>n474</name>
+                <branch_length>0.10373</branch_length>
+                <confidence type="unknown">21.0</confidence>
+                <taxonomy>
+                  <code>OS</code>
+                </taxonomy>
+                <clade>
+                  <name>OS08G43730</name>
+                  <branch_length>0.35931</branch_length>
+                  <taxonomy>
+                    <code>OS</code>
+                  </taxonomy>
+                  <taxonomy>
+                    <code>osa</code>
+                  </taxonomy>
+                  <events>
+                    <speciations>3</speciations>
+                  </events>
+                  <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                </clade>
+                <clade>
+                  <name>OS09G37520</name>
+                  <branch_length>0.13706</branch_length>
+                  <taxonomy>
+                    <code>OS</code>
+                  </taxonomy>
+                  <taxonomy>
+                    <code>osa</code>
+                  </taxonomy>
+                  <events>
+                    <speciations>1</speciations>
+                  </events>
+                  <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                </clade>
+                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+              </clade>
+            </clade>
+            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+          </clade>
+          <clade>
+            <name>n603</name>
+            <branch_length>0.10952</branch_length>
+            <confidence type="unknown">99.0</confidence>
+            <taxonomy>
+              <code>Dicots</code>
+            </taxonomy>
+            <clade>
+              <name>n557</name>
+              <branch_length>0.1194</branch_length>
+              <confidence type="unknown">86.0</confidence>
+              <taxonomy>
+                <code>Dicots</code>
+              </taxonomy>
+              <clade>
+                <name>n549</name>
+                <branch_length>0.03406</branch_length>
+                <confidence type="unknown">98.0</confidence>
+                <taxonomy>
+                  <code>Dicots</code>
+                </taxonomy>
+                <clade>
+                  <name>n547</name>
+                  <branch_length>0.08923</branch_length>
+                  <confidence type="unknown">76.0</confidence>
+                  <taxonomy>
+                    <code>Rosids</code>
+                  </taxonomy>
+                  <clade>
+                    <name>n541</name>
+                    <branch_length>0.03685</branch_length>
+                    <confidence type="unknown">78.0</confidence>
+                    <taxonomy>
+                      <code>Rosids</code>
+                    </taxonomy>
+                    <clade>
+                      <name>n523</name>
+                      <branch_length>0.00962</branch_length>
+                      <confidence type="unknown">94.0</confidence>
+                      <taxonomy>
+                        <code>Rosids</code>
+                      </taxonomy>
+                      <clade>
+                        <name>n507</name>
+                        <branch_length>0.01388</branch_length>
+                        <confidence type="unknown">81.0</confidence>
+                        <taxonomy>
+                          <code>Rosids1</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n485</name>
+                          <branch_length>0.08185</branch_length>
+                          <confidence type="unknown">100.0</confidence>
+                          <taxonomy>
+                            <code>Rosaceae</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n483</name>
+                            <branch_length>0.04904</branch_length>
+                            <confidence type="unknown">94.0</confidence>
+                            <taxonomy>
+                              <code>Maloideae</code>
+                            </taxonomy>
+                            <clade>
+                              <name>n481</name>
+                              <branch_length>0.04798</branch_length>
+                              <confidence type="unknown">98.0</confidence>
+                              <taxonomy>
+                                <code>MD</code>
+                              </taxonomy>
+                              <clade>
+                                <name>n479</name>
+                                <branch_length>0.03352</branch_length>
+                                <confidence type="unknown">96.0</confidence>
+                                <taxonomy>
+                                  <code>MD</code>
+                                </taxonomy>
+                                <clade>
+                                  <name>MD00G513340</name>
+                                  <branch_length>0.03911</branch_length>
+                                  <taxonomy>
+                                    <code>MD</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>mdo</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>5</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                                </clade>
+                                <clade>
+                                  <name>MD14G010560</name>
+                                  <branch_length>0.1003</branch_length>
+                                  <taxonomy>
+                                    <code>MD</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>mdo</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>1</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                                </clade>
+                                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                              </clade>
+                              <clade>
+                                <name>MD08G010960</name>
+                                <branch_length>0.07047</branch_length>
+                                <taxonomy>
+                                  <code>MD</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>mdo</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>2</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                              </clade>
+                              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                            </clade>
+                            <clade>
+                              <name>PPE_008G19290</name>
+                              <branch_length>0.08962</branch_length>
+                              <taxonomy>
+                                <code>PPE</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>ppe</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>4</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                            </clade>
+                          </clade>
+                          <clade>
+                            <name>FV2G11680</name>
+                            <branch_length>0.2443</branch_length>
+                            <taxonomy>
+                              <code>FV</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>fve</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>4</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                          </clade>
+                        </clade>
+                        <clade>
+                          <name>n506</name>
+                          <branch_length>0.18684</branch_length>
+                          <confidence type="unknown">100.0</confidence>
+                          <taxonomy>
+                            <code>Brassicaceae</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n496</name>
+                            <branch_length>0.09507</branch_length>
+                            <confidence type="unknown">99.0</confidence>
+                            <taxonomy>
+                              <code>Brassicaceae</code>
+                            </taxonomy>
+                            <clade>
+                              <name>n490</name>
+                              <branch_length>0.03958</branch_length>
+                              <confidence type="unknown">90.0</confidence>
+                              <taxonomy>
+                                <code>ND_Brassicaceae1</code>
+                              </taxonomy>
+                              <clade>
+                                <name>n488</name>
+                                <branch_length>0.0185</branch_length>
+                                <confidence type="unknown">86.0</confidence>
+                                <taxonomy>
+                                  <code>ND_Brassicaceae1</code>
+                                </taxonomy>
+                                <clade>
+                                  <name>BR01G03050</name>
+                                  <branch_length>0.15195</branch_length>
+                                  <taxonomy>
+                                    <code>BR</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>bra</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>2</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                                </clade>
+                                <clade>
+                                  <name>TP7G33010</name>
+                                  <branch_length>0.05466</branch_length>
+                                  <taxonomy>
+                                    <code>TP</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>tpa</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>5</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                                </clade>
+                              </clade>
+                              <clade>
+                                <name>BR08G13360</name>
+                                <branch_length>0.15872</branch_length>
+                                <taxonomy>
+                                  <code>BR</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>bra</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>3</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                              </clade>
+                              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.5</property>
+                            </clade>
+                            <clade>
+                              <name>n495</name>
+                              <branch_length>0.0445</branch_length>
+                              <confidence type="unknown">96.0</confidence>
+                              <taxonomy>
+                                <code>Camelineae</code>
+                              </taxonomy>
+                              <clade>
+                                <name>n493</name>
+                                <branch_length>0.05905</branch_length>
+                                <confidence type="unknown">89.0</confidence>
+                                <taxonomy>
+                                  <code>Arabidopsis</code>
+                                </taxonomy>
+                                <clade>
+                                  <name>AL7G05680</name>
+                                  <branch_length>0.01652</branch_length>
+                                  <taxonomy>
+                                    <code>AL</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>aly</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>2</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                                </clade>
+                                <clade>
+                                  <name>AT4G35240</name>
+                                  <branch_length>0.02892</branch_length>
+                                  <taxonomy>
+                                    <code>AT</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>ath</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>0</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                                </clade>
+                              </clade>
+                              <clade>
+                                <name>CRU_007G04740</name>
+                                <branch_length>0.05944</branch_length>
+                                <taxonomy>
+                                  <code>CRU</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>cru</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>4</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                              </clade>
+                            </clade>
+                          </clade>
+                          <clade>
+                            <name>n505</name>
+                            <branch_length>0.08204</branch_length>
+                            <confidence type="unknown">98.0</confidence>
+                            <taxonomy>
+                              <code>Brassicaceae</code>
+                            </taxonomy>
+                            <clade>
+                              <name>n501</name>
+                              <branch_length>0.04879</branch_length>
+                              <confidence type="unknown">97.0</confidence>
+                              <taxonomy>
+                                <code>Camelineae</code>
+                              </taxonomy>
+                              <clade>
+                                <name>n499</name>
+                                <branch_length>0.09235</branch_length>
+                                <confidence type="unknown">100.0</confidence>
+                                <taxonomy>
+                                  <code>Arabidopsis</code>
+                                </taxonomy>
+                                <clade>
+                                  <name>AL3G37830</name>
+                                  <branch_length>0.06968</branch_length>
+                                  <taxonomy>
+                                    <code>AL</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>aly</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>0</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                                </clade>
+                                <clade>
+                                  <name>AT2G17110</name>
+                                  <branch_length>0.0498</branch_length>
+                                  <taxonomy>
+                                    <code>AT</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>ath</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>1</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                                </clade>
+                              </clade>
+                              <clade>
+                                <name>CRU_003G29870</name>
+                                <branch_length>0.12895</branch_length>
+                                <taxonomy>
+                                  <code>CRU</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>cru</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>2</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                              </clade>
+                            </clade>
+                            <clade>
+                              <name>n504</name>
+                              <branch_length>0.03724</branch_length>
+                              <confidence type="unknown">30.0</confidence>
+                              <taxonomy>
+                                <code>ND_Brassicaceae1</code>
+                              </taxonomy>
+                              <clade>
+                                <name>BR06G24810</name>
+                                <branch_length>0.25075</branch_length>
+                                <taxonomy>
+                                  <code>BR</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>bra</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>1</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                              </clade>
+                              <clade>
+                                <name>TP3G30410</name>
+                                <branch_length>0.16763</branch_length>
+                                <taxonomy>
+                                  <code>TP</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>tpa</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>2</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                              </clade>
+                            </clade>
+                          </clade>
+                          <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.6667</property>
+                        </clade>
+                      </clade>
+                      <clade>
+                        <name>n522</name>
+                        <branch_length>0.03991</branch_length>
+                        <confidence type="unknown">24.0</confidence>
+                        <taxonomy>
+                          <code>Rosids</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n512</name>
+                          <branch_length>0.07918</branch_length>
+                          <confidence type="unknown">95.0</confidence>
+                          <taxonomy>
+                            <code>Rosids1</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n510</name>
+                            <branch_length>0.29905</branch_length>
+                            <confidence type="unknown">100.0</confidence>
+                            <taxonomy>
+                              <code>Benincaseae</code>
+                            </taxonomy>
+                            <clade>
+                              <name>CM00020G01860</name>
+                              <branch_length>0.17877</branch_length>
+                              <taxonomy>
+                                <code>CM</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>cme</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>2</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                            </clade>
+                            <clade>
+                              <name>CL02G11360</name>
+                              <branch_length>0.08578</branch_length>
+                              <taxonomy>
+                                <code>CL</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>cla</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>2</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                            </clade>
+                          </clade>
+                          <clade>
+                            <name>EG0009G12380</name>
+                            <branch_length>0.45761</branch_length>
+                            <taxonomy>
+                              <code>EG</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>egr</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>4</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                          </clade>
+                        </clade>
+                        <clade>
+                          <name>n521</name>
+                          <branch_length>0.02029</branch_length>
+                          <confidence type="unknown">100.0</confidence>
+                          <taxonomy>
+                            <code>Rosids</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n519</name>
+                            <branch_length>0.12403</branch_length>
+                            <confidence type="unknown">100.0</confidence>
+                            <taxonomy>
+                              <code>Malvales</code>
+                            </taxonomy>
+                            <clade>
+                              <name>n517</name>
+                              <branch_length>0.01114</branch_length>
+                              <confidence type="unknown">43.0</confidence>
+                              <taxonomy>
+                                <code>Malvales</code>
+                              </taxonomy>
+                              <clade>
+                                <name>n515</name>
+                                <branch_length>0.02416</branch_length>
+                                <confidence type="unknown">93.0</confidence>
+                                <taxonomy>
+                                  <code>GR</code>
+                                </taxonomy>
+                                <clade>
+                                  <name>GR05G25820</name>
+                                  <branch_length>0.241</branch_length>
+                                  <taxonomy>
+                                    <code>GR</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>gra</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>2</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                                </clade>
+                                <clade>
+                                  <name>GR02G20540</name>
+                                  <branch_length>0.05378</branch_length>
+                                  <taxonomy>
+                                    <code>GR</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>gra</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>0</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                                </clade>
+                                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                              </clade>
+                              <clade>
+                                <name>TC0002G04530</name>
+                                <branch_length>0.06995</branch_length>
+                                <taxonomy>
+                                  <code>TC</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>tca</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>0</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                              </clade>
+                            </clade>
+                            <clade>
+                              <name>GR08G04020</name>
+                              <branch_length>0.10524</branch_length>
+                              <taxonomy>
+                                <code>GR</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>gra</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>2</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                            </clade>
+                            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.5</property>
+                          </clade>
+                          <clade>
+                            <name>VV03G03920</name>
+                            <branch_length>0.34594</branch_length>
+                            <taxonomy>
+                              <code>VV</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>vvi</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>4</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                          </clade>
+                        </clade>
+                        <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                      </clade>
+                      <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                    </clade>
+                    <clade>
+                      <name>n540</name>
+                      <branch_length>0.01476</branch_length>
+                      <confidence type="unknown">68.0</confidence>
+                      <taxonomy>
+                        <code>Rosids1</code>
+                      </taxonomy>
+                      <clade>
+                        <name>n526</name>
+                        <branch_length>0.1416</branch_length>
+                        <confidence type="unknown">100.0</confidence>
+                        <taxonomy>
+                          <code>Benincaseae</code>
+                        </taxonomy>
+                        <clade>
+                          <name>CL02G03540</name>
+                          <branch_length>0.02729</branch_length>
+                          <taxonomy>
+                            <code>CL</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>cla</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>1</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                        </clade>
+                        <clade>
+                          <name>CM00019G01720</name>
+                          <branch_length>0.04286</branch_length>
+                          <taxonomy>
+                            <code>CM</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>cme</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>2</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                        </clade>
+                      </clade>
+                      <clade>
+                        <name>n539</name>
+                        <branch_length>0.03619</branch_length>
+                        <confidence type="unknown">95.0</confidence>
+                        <taxonomy>
+                          <code>Rosids1</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n537</name>
+                          <branch_length>0.00555</branch_length>
+                          <confidence type="unknown">57.0</confidence>
+                          <taxonomy>
+                            <code>Rosids1</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n535</name>
+                            <branch_length>0.04956</branch_length>
+                            <confidence type="unknown">98.0</confidence>
+                            <taxonomy>
+                              <code>Malpighiales</code>
+                            </taxonomy>
+                            <clade>
+                              <name>n529</name>
+                              <branch_length>0.03297</branch_length>
+                              <confidence type="unknown">91.0</confidence>
+                              <taxonomy>
+                                <code>PT</code>
+                              </taxonomy>
+                              <clade>
+                                <name>PT09G14290</name>
+                                <branch_length>0.15115</branch_length>
+                                <taxonomy>
+                                  <code>PT</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>ptr</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>3</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                              </clade>
+                              <clade>
+                                <name>PT04G18290</name>
+                                <branch_length>0.11515</branch_length>
+                                <taxonomy>
+                                  <code>PT</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>ptr</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>1</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                              </clade>
+                              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                            </clade>
+                            <clade>
+                              <name>n534</name>
+                              <branch_length>0.11909</branch_length>
+                              <confidence type="unknown">100.0</confidence>
+                              <taxonomy>
+                                <code>Euphorbiaceae</code>
+                              </taxonomy>
+                              <clade>
+                                <name>n532</name>
+                                <branch_length>0.06063</branch_length>
+                                <confidence type="unknown">97.0</confidence>
+                                <taxonomy>
+                                  <code>ME</code>
+                                </taxonomy>
+                                <clade>
+                                  <name>ME09460G00330</name>
+                                  <branch_length>0.07949</branch_length>
+                                  <taxonomy>
+                                    <code>ME</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>mes</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>4</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                                </clade>
+                                <clade>
+                                  <name>ME07579G00030</name>
+                                  <branch_length>0.21031</branch_length>
+                                  <taxonomy>
+                                    <code>ME</code>
+                                  </taxonomy>
+                                  <taxonomy>
+                                    <code>mes</code>
+                                  </taxonomy>
+                                  <events>
+                                    <speciations>5</speciations>
+                                  </events>
+                                  <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                                </clade>
+                                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                              </clade>
+                              <clade>
+                                <name>RC29797G00170</name>
+                                <branch_length>0.16143</branch_length>
+                                <taxonomy>
+                                  <code>RC</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>rco</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>2</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                              </clade>
+                            </clade>
+                          </clade>
+                          <clade>
+                            <name>CS00023G01650</name>
+                            <branch_length>0.37068</branch_length>
+                            <taxonomy>
+                              <code>CS</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>csi</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>4</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                          </clade>
+                        </clade>
+                        <clade>
+                          <name>CP00020G01810</name>
+                          <branch_length>0.26739</branch_length>
+                          <taxonomy>
+                            <code>CP</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>cpa</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>5</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                        </clade>
+                        <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                      </clade>
+                      <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                    </clade>
+                    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.1053</property>
+                  </clade>
+                  <clade>
+                    <name>n546</name>
+                    <branch_length>0.1639</branch_length>
+                    <confidence type="unknown">100.0</confidence>
+                    <taxonomy>
+                      <code>Papilionoideae</code>
+                    </taxonomy>
+                    <clade>
+                      <name>n544</name>
+                      <branch_length>0.08355</branch_length>
+                      <confidence type="unknown">95.0</confidence>
+                      <taxonomy>
+                        <code>GM</code>
+                      </taxonomy>
+                      <clade>
+                        <name>GM14G00530</name>
+                        <branch_length>0.05973</branch_length>
+                        <taxonomy>
+                          <code>GM</code>
+                        </taxonomy>
+                        <taxonomy>
+                          <code>gma</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>2</speciations>
+                        </events>
+                        <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                      </clade>
+                      <clade>
+                        <name>GM02G48040</name>
+                        <branch_length>0.06629</branch_length>
+                        <taxonomy>
+                          <code>GM</code>
+                        </taxonomy>
+                        <taxonomy>
+                          <code>gma</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>0</speciations>
+                        </events>
+                        <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                      </clade>
+                      <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                    </clade>
+                    <clade>
+                      <name>MT5G098980</name>
+                      <branch_length>0.19315</branch_length>
+                      <taxonomy>
+                        <code>MT</code>
+                      </taxonomy>
+                      <taxonomy>
+                        <code>mtr</code>
+                      </taxonomy>
+                      <events>
+                        <speciations>1</speciations>
+                      </events>
+                      <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                    </clade>
+                  </clade>
+                  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                </clade>
+                <clade>
+                  <name>BV9G01170</name>
+                  <branch_length>0.45998</branch_length>
+                  <taxonomy>
+                    <code>BV</code>
+                  </taxonomy>
+                  <taxonomy>
+                    <code>bvu</code>
+                  </taxonomy>
+                  <events>
+                    <speciations>4</speciations>
+                  </events>
+                  <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                </clade>
+              </clade>
+              <clade>
+                <name>n556</name>
+                <branch_length>0.11499</branch_length>
+                <confidence type="unknown">100.0</confidence>
+                <taxonomy>
+                  <code>Solanum</code>
+                </taxonomy>
+                <clade>
+                  <name>n552</name>
+                  <branch_length>0.10912</branch_length>
+                  <confidence type="unknown">100.0</confidence>
+                  <taxonomy>
+                    <code>Solanum</code>
+                  </taxonomy>
+                  <clade>
+                    <name>SL01G112050</name>
+                    <branch_length>0.01272</branch_length>
+                    <taxonomy>
+                      <code>SL</code>
+                    </taxonomy>
+                    <taxonomy>
+                      <code>sly</code>
+                    </taxonomy>
+                    <events>
+                      <speciations>2</speciations>
+                    </events>
+                    <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                  </clade>
+                  <clade>
+                    <name>ST01G049470</name>
+                    <branch_length>0.02966</branch_length>
+                    <taxonomy>
+                      <code>ST</code>
+                    </taxonomy>
+                    <taxonomy>
+                      <code>stu</code>
+                    </taxonomy>
+                    <events>
+                      <speciations>1</speciations>
+                    </events>
+                    <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                  </clade>
+                </clade>
+                <clade>
+                  <name>n555</name>
+                  <branch_length>0.15254</branch_length>
+                  <confidence type="unknown">100.0</confidence>
+                  <taxonomy>
+                    <code>Solanum</code>
+                  </taxonomy>
+                  <clade>
+                    <name>ST10G017370</name>
+                    <branch_length>0.01239</branch_length>
+                    <taxonomy>
+                      <code>ST</code>
+                    </taxonomy>
+                    <taxonomy>
+                      <code>stu</code>
+                    </taxonomy>
+                    <events>
+                      <speciations>5</speciations>
+                    </events>
+                    <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                  </clade>
+                  <clade>
+                    <name>SL10G074470</name>
+                    <branch_length>0.04013</branch_length>
+                    <taxonomy>
+                      <code>SL</code>
+                    </taxonomy>
+                    <taxonomy>
+                      <code>sly</code>
+                    </taxonomy>
+                    <events>
+                      <speciations>3</speciations>
+                    </events>
+                    <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                  </clade>
+                </clade>
+                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+              </clade>
+              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+            </clade>
+            <clade>
+              <name>n602</name>
+              <branch_length>0.17222</branch_length>
+              <confidence type="unknown">100.0</confidence>
+              <taxonomy>
+                <code>Rosids</code>
+              </taxonomy>
+              <clade>
+                <name>n600</name>
+                <branch_length>0.07825</branch_length>
+                <confidence type="unknown">82.0</confidence>
+                <taxonomy>
+                  <code>Rosids1</code>
+                </taxonomy>
+                <clade>
+                  <name>n598</name>
+                  <branch_length>0.03057</branch_length>
+                  <confidence type="unknown">14.0</confidence>
+                  <taxonomy>
+                    <code>Rosids1</code>
+                  </taxonomy>
+                  <clade>
+                    <name>n564</name>
+                    <branch_length>0.81709</branch_length>
+                    <confidence type="unknown">100.0</confidence>
+                    <taxonomy>
+                      <code>Brassicaceae</code>
+                    </taxonomy>
+                    <clade>
+                      <name>n562</name>
+                      <branch_length>0.02499</branch_length>
+                      <confidence type="unknown">11.0</confidence>
+                      <taxonomy>
+                        <code>Brassicaceae</code>
+                      </taxonomy>
+                      <clade>
+                        <name>n560</name>
+                        <branch_length>0.09867</branch_length>
+                        <confidence type="unknown">50.0</confidence>
+                        <taxonomy>
+                          <code>Brassicaceae</code>
+                        </taxonomy>
+                        <clade>
+                          <name>TP1G18240</name>
+                          <branch_length>0.20496</branch_length>
+                          <taxonomy>
+                            <code>TP</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>tpa</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>3</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                        </clade>
+                        <clade>
+                          <name>CRU_001G19190</name>
+                          <branch_length>0.16697</branch_length>
+                          <taxonomy>
+                            <code>CRU</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>cru</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>3</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                        </clade>
+                      </clade>
+                      <clade>
+                        <name>AL1G21650</name>
+                        <branch_length>0.15178</branch_length>
+                        <taxonomy>
+                          <code>AL</code>
+                        </taxonomy>
+                        <taxonomy>
+                          <code>aly</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>2</speciations>
+                        </events>
+                        <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                      </clade>
+                      <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                    </clade>
+                    <clade>
+                      <name>AT1G20530</name>
+                      <branch_length>0.09656</branch_length>
+                      <taxonomy>
+                        <code>AT</code>
+                      </taxonomy>
+                      <taxonomy>
+                        <code>ath</code>
+                      </taxonomy>
+                      <events>
+                        <speciations>4</speciations>
+                      </events>
+                      <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                    </clade>
+                    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                  </clade>
+                  <clade>
+                    <name>n597</name>
+                    <branch_length>0.05514</branch_length>
+                    <confidence type="unknown">70.0</confidence>
+                    <taxonomy>
+                      <code>Rosids1</code>
+                    </taxonomy>
+                    <clade>
+                      <name>n579</name>
+                      <branch_length>0.05612</branch_length>
+                      <confidence type="unknown">88.0</confidence>
+                      <taxonomy>
+                        <code>ND_Fabids2</code>
+                      </taxonomy>
+                      <clade>
+                        <name>n569</name>
+                        <branch_length>0.2887</branch_length>
+                        <confidence type="unknown">100.0</confidence>
+                        <taxonomy>
+                          <code>Rosaceae</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n567</name>
+                          <branch_length>0.18644</branch_length>
+                          <confidence type="unknown">99.0</confidence>
+                          <taxonomy>
+                            <code>Maloideae</code>
+                          </taxonomy>
+                          <clade>
+                            <name>PPE_001G36390</name>
+                            <branch_length>0.26799</branch_length>
+                            <taxonomy>
+                              <code>PPE</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>ppe</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>0</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                          </clade>
+                          <clade>
+                            <name>MD08G000350</name>
+                            <branch_length>0.31656</branch_length>
+                            <taxonomy>
+                              <code>MD</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>mdo</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>5</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                          </clade>
+                        </clade>
+                        <clade>
+                          <name>FV2G37480</name>
+                          <branch_length>0.43688</branch_length>
+                          <taxonomy>
+                            <code>FV</code>
+                          </taxonomy>
+                          <taxonomy>
+                            <code>fve</code>
+                          </taxonomy>
+                          <events>
+                            <speciations>2</speciations>
+                          </events>
+                          <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                        </clade>
+                      </clade>
+                      <clade>
+                        <name>n578</name>
+                        <branch_length>0.09393</branch_length>
+                        <confidence type="unknown">8.0</confidence>
+                        <taxonomy>
+                          <code>ND_Fabids2</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n572</name>
+                          <branch_length>0.87796</branch_length>
+                          <confidence type="unknown">100.0</confidence>
+                          <taxonomy>
+                            <code>Benincaseae</code>
+                          </taxonomy>
+                          <clade>
+                            <name>CL08G09340</name>
+                            <branch_length>0.20696</branch_length>
+                            <taxonomy>
+                              <code>CL</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>cla</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>1</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                          </clade>
+                          <clade>
+                            <name>CM00096G00530</name>
+                            <branch_length>0.09223</branch_length>
+                            <taxonomy>
+                              <code>CM</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>cme</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>2</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                          </clade>
+                        </clade>
+                        <clade>
+                          <name>n577</name>
+                          <branch_length>0.36146</branch_length>
+                          <confidence type="unknown">100.0</confidence>
+                          <taxonomy>
+                            <code>Papilionoideae</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n575</name>
+                            <branch_length>0.13201</branch_length>
+                            <confidence type="unknown">98.0</confidence>
+                            <taxonomy>
+                              <code>GM</code>
+                            </taxonomy>
+                            <clade>
+                              <name>GM06G02181</name>
+                              <branch_length>0.08784</branch_length>
+                              <taxonomy>
+                                <code>GM</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>gma</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>0</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                            </clade>
+                            <clade>
+                              <name>GM04G02080</name>
+                              <branch_length>0.10599</branch_length>
+                              <taxonomy>
+                                <code>GM</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>gma</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>2</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                            </clade>
+                            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                          </clade>
+                          <clade>
+                            <name>MT3G115120</name>
+                            <branch_length>0.45262</branch_length>
+                            <taxonomy>
+                              <code>MT</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>mtr</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>3</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                          </clade>
+                        </clade>
+                      </clade>
+                      <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                    </clade>
+                    <clade>
+                      <name>n596</name>
+                      <branch_length>0.03586</branch_length>
+                      <confidence type="unknown">84.0</confidence>
+                      <taxonomy>
+                        <code>Rosids1</code>
+                      </taxonomy>
+                      <clade>
+                        <name>n594</name>
+                        <branch_length>0.05828</branch_length>
+                        <confidence type="unknown">93.0</confidence>
+                        <taxonomy>
+                          <code>Rosids1</code>
+                        </taxonomy>
+                        <clade>
+                          <name>n584</name>
+                          <branch_length>0.01945</branch_length>
+                          <confidence type="unknown">48.0</confidence>
+                          <taxonomy>
+                            <code>ND_Malvids1</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n582</name>
+                            <branch_length>0.15156</branch_length>
+                            <confidence type="unknown">99.0</confidence>
+                            <taxonomy>
+                              <code>Malvales</code>
+                            </taxonomy>
+                            <clade>
+                              <name>GR09G18850</name>
+                              <branch_length>0.3289</branch_length>
+                              <taxonomy>
+                                <code>GR</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>gra</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>1</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                            </clade>
+                            <clade>
+                              <name>TC0008G05520</name>
+                              <branch_length>0.22099</branch_length>
+                              <taxonomy>
+                                <code>TC</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>tca</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>5</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                            </clade>
+                          </clade>
+                          <clade>
+                            <name>CP00026G02120</name>
+                            <branch_length>0.54604</branch_length>
+                            <taxonomy>
+                              <code>CP</code>
+                            </taxonomy>
+                            <taxonomy>
+                              <code>cpa</code>
+                            </taxonomy>
+                            <events>
+                              <speciations>4</speciations>
+                            </events>
+                            <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                          </clade>
+                        </clade>
+                        <clade>
+                          <name>n593</name>
+                          <branch_length>0.17979</branch_length>
+                          <confidence type="unknown">100.0</confidence>
+                          <taxonomy>
+                            <code>Malpighiales</code>
+                          </taxonomy>
+                          <clade>
+                            <name>n587</name>
+                            <branch_length>0.19606</branch_length>
+                            <confidence type="unknown">100.0</confidence>
+                            <taxonomy>
+                              <code>PT</code>
+                            </taxonomy>
+                            <clade>
+                              <name>PT05G24940</name>
+                              <branch_length>0.17069</branch_length>
+                              <taxonomy>
+                                <code>PT</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>ptr</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>0</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                            </clade>
+                            <clade>
+                              <name>PT02G01170</name>
+                              <branch_length>0.25686</branch_length>
+                              <taxonomy>
+                                <code>PT</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>ptr</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>3</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                            </clade>
+                            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                          </clade>
+                          <clade>
+                            <name>n592</name>
+                            <branch_length>0.13169</branch_length>
+                            <confidence type="unknown">99.0</confidence>
+                            <taxonomy>
+                              <code>Euphorbiaceae</code>
+                            </taxonomy>
+                            <clade>
+                              <name>n590</name>
+                              <branch_length>0.05815</branch_length>
+                              <confidence type="unknown">95.0</confidence>
+                              <taxonomy>
+                                <code>ME</code>
+                              </taxonomy>
+                              <clade>
+                                <name>ME02943G00870</name>
+                                <branch_length>0.2694</branch_length>
+                                <taxonomy>
+                                  <code>ME</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>mes</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>4</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">blue</property>
+                              </clade>
+                              <clade>
+                                <name>ME06708G00140</name>
+                                <branch_length>0.18961</branch_length>
+                                <taxonomy>
+                                  <code>ME</code>
+                                </taxonomy>
+                                <taxonomy>
+                                  <code>mes</code>
+                                </taxonomy>
+                                <events>
+                                  <speciations>3</speciations>
+                                </events>
+                                <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                              </clade>
+                              <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">1</property>
+                            </clade>
+                            <clade>
+                              <name>RC30170G06600</name>
+                              <branch_length>0.25236</branch_length>
+                              <taxonomy>
+                                <code>RC</code>
+                              </taxonomy>
+                              <taxonomy>
+                                <code>rco</code>
+                              </taxonomy>
+                              <events>
+                                <speciations>0</speciations>
+                              </events>
+                              <property ref="resistance" datatype="xsd:string" applies_to="clade">yellow</property>
+                            </clade>
+                          </clade>
+                        </clade>
+                      </clade>
+                      <clade>
+                        <name>CS00002G06430</name>
+                        <branch_length>0.4892</branch_length>
+                        <taxonomy>
+                          <code>CS</code>
+                        </taxonomy>
+                        <taxonomy>
+                          <code>csi</code>
+                        </taxonomy>
+                        <events>
+                          <speciations>2</speciations>
+                        </events>
+                        <property ref="resistance" datatype="xsd:string" applies_to="clade">red</property>
+                      </clade>
+                      <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                    </clade>
+                    <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                  </clade>
+                  <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+                </clade>
+                <clade>
+                  <name>EG0006G30230</name>
+                  <branch_length>0.82331</branch_length>
+                  <taxonomy>
+                    <code>EG</code>
+                  </taxonomy>
+                  <taxonomy>
+                    <code>egr</code>
+                  </taxonomy>
+                  <events>
+                    <speciations>2</speciations>
+                  </events>
+                  <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+                </clade>
+                <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0</property>
+              </clade>
+              <clade>
+                <name>VV18G00680</name>
+                <branch_length>0.50047</branch_length>
+                <taxonomy>
+                  <code>VV</code>
+                </taxonomy>
+                <taxonomy>
+                  <code>vvi</code>
+                </taxonomy>
+                <events>
+                  <speciations>2</speciations>
+                </events>
+                <property ref="resistance" datatype="xsd:string" applies_to="clade">green</property>
+              </clade>
+            </clade>
+            <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.6923</property>
+          </clade>
+        </clade>
+        <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.7667</property>
+      </clade>
+      <property applies_to="clade" datatype="xksd:double" ref="duplication consistency score:">0.8333</property>
+    </clade>
+  </phylogeny>
+  <labels>
+    <label type="text">
+      <name>Duplication</name>
+      <data tag="events" ref="speciations">
+     </data>
+    </label>
+    <label type="color">
+      <name>Speciations</name>
+      <data tag="property" ref="resistance"/>
+    </label>
+  </labels>
+</phyloxml>
diff --git a/samples/sample.xml b/submissions/outergraphs.xml
similarity index 98%
rename from samples/sample.xml
rename to submissions/outergraphs.xml
index 16e703c..7cccc2b 100644
--- a/samples/sample.xml
+++ b/submissions/outergraphs.xml
@@ -7635,157 +7635,4 @@
          </data>
       </graph>
    </graphs>
-   <taxonomies>
-      <taxonomy code="aly">
-         <color>0x40FF0</color>
-         <name>Arabidopsis lyrata</name>
-         <url>http://www.example.com</url>
-      </taxonomy>
-      <color>
-         <code>ath</code>
-         <value>0x82FA58</value>
-      </color>
-      <color>
-         <code>atr</code>
-         <value>0xFE844E</value>
-      </color>
-      <color>
-         <code>bra</code>
-         <value>0xD8F6CE</value>
-      </color>
-      <color>
-         <code>bvu</code>
-         <value>0xA3389D</value>
-      </color>
-      <color>
-         <code>cla</code>
-         <value>0x95C0CF</value>
-      </color>
-      <color>
-         <code>cme</code>
-         <value>0xA9C5CF</value>
-      </color>
-      <color>
-         <code>cpa</code>
-         <value>0xC8FE2E</value>
-      </color>
-      <color>
-         <code>cre</code>
-         <value>0x61210B</value>
-      </color>
-      <color>
-         <code>cru</code>
-         <value>0x80FF00</value>
-      </color>
-      <color>
-         <code>csi</code>
-         <value>0x095C10</value>
-      </color>
-      <color>
-         <code>egr</code>
-         <value>0x516B54</value>
-      </color>
-      <color>
-         <code>fve</code>
-         <value>0x25ACD9</value>
-      </color>
-      <color>
-         <code>gma</code>
-         <value>0x186EB5</value>
-      </color>
-      <color>
-         <code>gra</code>
-         <value>0x37BA49</value>
-      </color>
-      <color>
-         <code>lja</code>
-         <value>0x7293AD</value>
-      </color>
-      <taxonomy code="mdo">
-         <color>0x4DB4D6</color>
-      </taxonomy>
-      <color>
-         <code>mes</code>
-         <value>0x6D68C4</value>
-      </color>
-      <color>
-         <code>mtr</code>
-         <value>0x4980AD</value>
-      </color>
-      <color>
-         <code>olu</code>
-         <value>0x610B0B</value>
-      </color>
-      <color>
-         <code>osa</code>
-         <value>0xF7BE81</value>
-      </color>
-      <color>
-         <code>ppa</code>
-         <value>0xFE642E</value>
-      </color>
-      <color>
-         <code>ppe</code>
-         <value>0x73BAD1</value>
-      </color>
-      <color>
-         <code>ptr</code>
-         <value>0x443DC4</value>
-      </color>
-      <color>
-         <code>rco</code>
-         <value>0x8986BF</value>
-      </color>
-      <color>
-         <code>sly</code>
-         <value>0xA378AD</value>
-      </color>
-      <color>
-         <code>stu</code>
-         <value>0x9D4FB0</value>
-      </color>
-      <color>
-         <code>tca</code>
-         <value>0x37BD42</value>
-      </color>
-      <color>
-         <code>tpa</code>
-         <value>0xBCF5A9</value>
-      </color>
-      <color>
-         <code>vvi</code>
-         <value>0xB595CF</value>
-      </color>
-      <color>
-         <code>zma</code>
-         <value>0x5E610B</value>
-      </color>
-   </taxonomies>
-   <domains>
-      <domain name="IPR011992">
-         <color>0x12C6D7</color>
-         <description>Pyruvate dehydrogenase</description>
-         <url>http://www.example.com</url>
-      </domain>
-      <color>
-         <code>IPR002048</code>
-         <value>0xFAF38C</value>
-      </color>
-      <color>
-         <code>IPR001005</code>
-         <value>0xF9D380</value>
-      </color>
-      <color>
-         <code>IPR004910</code>
-         <value>0xA9BFAB</value>
-      </color>
-      <color>
-         <code>IPR017884</code>
-         <value>0xAF45C9</value>
-      </color>
-      <color>
-         <code>IPR009057</code>
-         <value>0x2819CC</value>
-      </color>
-   </domains>
 </phyloxml>
diff --git a/submissions/taxonomy.xml b/submissions/taxonomy.xml
new file mode 100644
index 0000000..e0b4298
--- /dev/null
+++ b/submissions/taxonomy.xml
@@ -0,0 +1,2505 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<phyloxml xmlns="http://www.phyloxml.org" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.00/phyloxml.xsd">
+<phylogeny rooted="true">
+  <clade>
+    <confidence type="bootstrap">100.0</confidence>
+    <clade>
+      <branch_length>0.8758800000000001</branch_length>
+      <confidence type="bootstrap">100.0</confidence>
+      <clade>
+        <branch_length>0.17287</branch_length>
+        <confidence type="bootstrap">100.0</confidence>
+        <clade>
+          <branch_length>0.03877</branch_length>
+          <confidence type="bootstrap">97.0</confidence>
+          <clade>
+            <branch_length>0.12225</branch_length>
+            <confidence type="bootstrap">100.0</confidence>
+            <clade>
+              <name>PP00079G00800</name>
+              <branch_length>0.03258</branch_length>
+            <taxonomy>
+                  <code>ppa</code>
+                </taxonomy>
+                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PP00079G00800</property>
+                <sequence>
+                  <domain_architecture length="2214">
+                    <domain confidence="2.62E-38" from="1702" to="1860">IPR009051</domain>
+                    <domain confidence="8.2E-106" from="1393" to="1660">IPR002489</domain>
+                    <domain confidence="9.3E-103" from="608" to="938">IPR013785</domain>
+                    <domain confidence="2.9E-64" from="1415" to="1606">IPR002489</domain>
+                    <domain confidence="2.1E-226" from="1705" to="2190">IPR006005</domain>
+                    <domain confidence="7.2E-118" from="612" to="896">IPR006982</domain>
+                    <domain confidence="5.62E-99" from="1386" to="1651">IPR002489</domain>
+                    <domain confidence="1.2E-179" from="964" to="1374">IPR013785</domain>
+                    <domain confidence="24.271" from="135" to="540">IPR017932</domain>
+                    <domain confidence="2.4E-41" from="1853" to="1942">IPR016040</domain>
+                    <domain confidence="2.4E-41" from="2125" to="2198">IPR016040</domain>
+                    <domain confidence="9.8E-6" from="1851" to="1923">IPR001327</domain>
+                    <domain confidence="1.6E-159" from="962" to="1334">IPR002932</domain>
+                    <domain confidence="6.6E-20" from="1851" to="2165">IPR023753</domain>
+                    <domain confidence="1.8E-22" from="1738" to="1838">IPR028261</domain>
+                    <domain confidence="2.6E-142" from="135" to="512">IPR000583</domain>
+                  </domain_architecture>
+                </sequence>
+              </clade>
+            <clade>
+              <name>PP00058G00660</name>
+              <branch_length>0.03389</branch_length>
+            <taxonomy>
+                  <code>ppa</code>
+                </taxonomy>
+                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PP00058G00660</property>
+                <sequence>
+                  <domain_architecture length="2211">
+                    <domain confidence="3.6E-158" from="961" to="1332">IPR002932</domain>
+                    <domain confidence="6.7E-42" from="2120" to="2198">IPR016040</domain>
+                    <domain confidence="2.3E-21" from="1736" to="1835">IPR028261</domain>
+                    <domain confidence="1.5E-20" from="1848" to="2162">IPR023753</domain>
+                    <domain confidence="5.1E-224" from="1702" to="2187">IPR006005</domain>
+                    <domain confidence="1.0E-63" from="1414" to="1605">IPR002489</domain>
+                    <domain confidence="7.85E-38" from="1701" to="1857">IPR009051</domain>
+                    <domain confidence="6.7E-6" from="1848" to="1920">IPR001327</domain>
+                    <domain confidence="6.7E-42" from="1850" to="1939">IPR016040</domain>
+                    <domain confidence="1.0E-179" from="960" to="1373">IPR013785</domain>
+                    <domain confidence="5.8E-117" from="611" to="895">IPR006982</domain>
+                    <domain confidence="24.232" from="134" to="539">IPR017932</domain>
+                    <domain confidence="3.5E-140" from="134" to="511">IPR000583</domain>
+                    <domain confidence="4.1E-104" from="1392" to="1660">IPR002489</domain>
+                    <domain confidence="1.96E-96" from="1385" to="1650">IPR002489</domain>
+                    <domain confidence="1.5E-101" from="603" to="937">IPR013785</domain>
+                  </domain_architecture>
+                </sequence>
+              </clade>
+          </clade>
+          <clade>
+            <branch_length>0.10527</branch_length>
+            <confidence type="bootstrap">100.0</confidence>
+            <clade>
+              <name>PP00081G01010</name>
+              <branch_length>0.10202</branch_length>
+            <taxonomy>
+                  <code>ppa</code>
+                </taxonomy>
+                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PP00081G01010</property>
+                <sequence>
+                  <domain_architecture length="2215">
+                    <domain confidence="22.72" from="106" to="511">IPR017932</domain>
+                    <domain confidence="1.1E-209" from="1685" to="2183">IPR006005</domain>
+                    <domain confidence="2.4E-38" from="2113" to="2195">IPR016040</domain>
+                    <domain confidence="3.9E-104" from="1367" to="1637">IPR002489</domain>
+                    <domain confidence="2.4E-38" from="1832" to="1922">IPR016040</domain>
+                    <domain confidence="1.26E-38" from="1682" to="1839">IPR009051</domain>
+                    <domain confidence="6.9E-22" from="1711" to="1816">IPR028261</domain>
+                    <domain confidence="5.0E-112" from="584" to="872">IPR006982</domain>
+                    <domain confidence="4.32E-98" from="1362" to="1624">IPR002489</domain>
+                    <domain confidence="1.5E-64" from="1391" to="1577">IPR002489</domain>
+                    <domain confidence="2.7E-139" from="106" to="483">IPR000583</domain>
+                    <domain confidence="3.8E-99" from="577" to="914">IPR013785</domain>
+                    <domain confidence="5.2E-19" from="1830" to="2157">IPR023753</domain>
+                    <domain confidence="1.4E-158" from="937" to="1309">IPR002932</domain>
+                    <domain confidence="3.3E-177" from="986" to="1352">IPR013785</domain>
+                  </domain_architecture>
+                </sequence>
+              </clade>
+            <clade>
+              <name>PP00093G00670</name>
+              <branch_length>0.05662</branch_length>
+            <taxonomy>
+                  <code>ppa</code>
+                </taxonomy>
+                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PP00093G00670</property>
+                <sequence>
+                  <domain_architecture length="2252">
+                    <domain confidence="3.6E-157" from="937" to="1310">IPR002932</domain>
+                    <domain confidence="4.9E-21" from="1835" to="2149">IPR023753</domain>
+                    <domain confidence="9.6E-140" from="106" to="483">IPR000583</domain>
+                    <domain confidence="1.2E-106" from="1367" to="1637">IPR002489</domain>
+                    <domain confidence="2.82E-40" from="1688" to="1844">IPR009051</domain>
+                    <domain confidence="9.29E-99" from="1362" to="1626">IPR002489</domain>
+                    <domain confidence="1.6E-40" from="1837" to="1926">IPR016040</domain>
+                    <domain confidence="22.507" from="106" to="511">IPR017932</domain>
+                    <domain confidence="1.1E-225" from="1689" to="2174">IPR006005</domain>
+                    <domain confidence="1.2E-4" from="1835" to="1907">IPR001327</domain>
+                    <domain confidence="1.6E-40" from="2107" to="2186">IPR016040</domain>
+                    <domain confidence="3.0E-102" from="573" to="911">IPR013785</domain>
+                    <domain confidence="5.7E-177" from="986" to="1350">IPR013785</domain>
+                    <domain confidence="1.4E-114" from="584" to="872">IPR006982</domain>
+                    <domain confidence="1.7E-66" from="1391" to="1581">IPR002489</domain>
+                    <domain confidence="1.4E-22" from="1712" to="1821">IPR028261</domain>
+                  </domain_architecture>
+                </sequence>
+              </clade>
+          </clade>
+        </clade>
+        <clade>
+          <branch_length>0.08021</branch_length>
+          <confidence type="bootstrap">56.0</confidence>
+          <clade>
+            <branch_length>0.08656</branch_length>
+            <confidence type="bootstrap">100.0</confidence>
+            <clade>
+              <branch_length>0.04406</branch_length>
+              <confidence type="bootstrap">100.0</confidence>
+              <clade>
+                <branch_length>0.03065</branch_length>
+                <confidence type="bootstrap">100.0</confidence>
+                <clade>
+                  <name>ZM08G25710</name>
+                  <branch_length>0.01433</branch_length>
+                <taxonomy>
+                      <code>zma</code>
+                    </taxonomy>
+                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ZM08G25710</property>
+                    <sequence>
+                      <domain_architecture length="2174">
+                        <domain confidence="2.7E-159" from="936" to="1305">IPR002932</domain>
+                        <domain confidence="2.22E-98" from="1356" to="1622">IPR002489</domain>
+                        <domain confidence="1.8E-17" from="1814" to="2127">IPR023753</domain>
+                        <domain confidence="2.2E-116" from="580" to="869">IPR006982</domain>
+                        <domain confidence="1.5E-222" from="1666" to="2149">IPR006005</domain>
+                        <domain confidence="6.8E-65" from="1386" to="1573">IPR002489</domain>
+                        <domain confidence="1.2E-102" from="565" to="916">IPR013785</domain>
+                        <domain confidence="23.573" from="106" to="510">IPR017932</domain>
+                        <domain confidence="4.8E-107" from="1363" to="1629">IPR002489</domain>
+                        <domain confidence="1.15E-34" from="1665" to="1823">IPR009051</domain>
+                        <domain confidence="1.4E-21" from="1688" to="1800">IPR028261</domain>
+                        <domain confidence="5.2E-180" from="971" to="1345">IPR013785</domain>
+                        <domain confidence="5.7E-144" from="106" to="482">IPR000583</domain>
+                      </domain_architecture>
+                    </sequence>
+                  </clade>
+                <clade>
+                  <name>ZM03G34700</name>
+                  <branch_length>0.01261</branch_length>
+                <taxonomy>
+                      <code>zma</code>
+                    </taxonomy>
+                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ZM03G34700</property>
+                    <sequence>
+                      <domain_architecture length="2188">
+                        <domain confidence="1.4E-107" from="1363" to="1632">IPR002489</domain>
+                        <domain confidence="1.4E-221" from="1678" to="2161">IPR006005</domain>
+                        <domain confidence="5.1E-99" from="1356" to="1622">IPR002489</domain>
+                        <domain confidence="1.2E-144" from="106" to="482">IPR000583</domain>
+                        <domain confidence="1.5E-180" from="971" to="1345">IPR013785</domain>
+                        <domain confidence="8.6E-160" from="936" to="1305">IPR002932</domain>
+                        <domain confidence="1.0E-102" from="573" to="916">IPR013785</domain>
+                        <domain confidence="7.3E-117" from="579" to="869">IPR006982</domain>
+                        <domain confidence="1.9E-65" from="1386" to="1573">IPR002489</domain>
+                        <domain confidence="3.77E-34" from="1674" to="1834">IPR009051</domain>
+                        <domain confidence="23.592" from="106" to="510">IPR017932</domain>
+                        <domain confidence="1.8E-21" from="1700" to="1812">IPR028261</domain>
+                        <domain confidence="1.3E-4" from="1826" to="1860">IPR001327</domain>
+                        <domain confidence="2.9E-16" from="1826" to="2139">IPR023753</domain>
+                      </domain_architecture>
+                    </sequence>
+                  </clade>
+              </clade>
+              <clade>
+                <name>OS01G48960</name>
+                <branch_length>0.04439</branch_length>
+              <taxonomy>
+                    <code>osa</code>
+                  </taxonomy>
+                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/OS01G48960</property>
+                  <sequence>
+                    <domain_architecture length="2168">
+                      <domain confidence="6.28E-35" from="1659" to="1817">IPR009051</domain>
+                      <domain confidence="1.7E-107" from="1357" to="1625">IPR002489</domain>
+                      <domain confidence="1.4E-64" from="1380" to="1573">IPR002489</domain>
+                      <domain confidence="23.321" from="100" to="504">IPR017932</domain>
+                      <domain confidence="8.6E-161" from="929" to="1299">IPR002932</domain>
+                      <domain confidence="4.4E-117" from="575" to="863">IPR006982</domain>
+                      <domain confidence="3.5E-21" from="1697" to="1794">IPR028261</domain>
+                      <domain confidence="4.6E-222" from="1660" to="2144">IPR006005</domain>
+                      <domain confidence="2.0E-180" from="965" to="1339">IPR013785</domain>
+                      <domain confidence="3.27E-98" from="1350" to="1616">IPR002489</domain>
+                      <domain confidence="5.8E-19" from="1808" to="2121">IPR023753</domain>
+                      <domain confidence="9.4E-145" from="100" to="476">IPR000583</domain>
+                      <domain confidence="2.9E-105" from="558" to="910">IPR013785</domain>
+                    </domain_architecture>
+                  </sequence>
+                </clade>
+            </clade>
+            <clade>
+              <branch_length>0.04534</branch_length>
+              <confidence type="bootstrap">100.0</confidence>
+              <clade>
+                <name>ZM06G30610</name>
+                <branch_length>0.12664</branch_length>
+              <taxonomy>
+                    <code>zma</code>
+                  </taxonomy>
+                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ZM06G30610</property>
+                  <sequence>
+                    <domain_architecture length="2195">
+                      <domain confidence="1.0E-214" from="1685" to="2170">IPR006005</domain>
+                      <domain confidence="1.0E-39" from="2102" to="2176">IPR016040</domain>
+                      <domain confidence="1.2E-101" from="576" to="913">IPR013785</domain>
+                      <domain confidence="1.7E-96" from="1363" to="1629">IPR002489</domain>
+                      <domain confidence="1.3E-114" from="588" to="875">IPR006982</domain>
+                      <domain confidence="1.4E-154" from="941" to="1311">IPR002932</domain>
+                      <domain confidence="7.8E-104" from="1369" to="1640">IPR002489</domain>
+                      <domain confidence="3.2E-65" from="1392" to="1580">IPR002489</domain>
+                      <domain confidence="1.6E-171" from="964" to="1352">IPR013785</domain>
+                      <domain confidence="3.2E-19" from="1834" to="2146">IPR023753</domain>
+                      <domain confidence="23.767" from="114" to="518">IPR017932</domain>
+                      <domain confidence="1.0E-39" from="1835" to="1924">IPR016040</domain>
+                      <domain confidence="3.87E-30" from="1684" to="1842">IPR009051</domain>
+                      <domain confidence="7.3E-142" from="114" to="490">IPR000583</domain>
+                      <domain confidence="4.0E-20" from="1722" to="1819">IPR028261</domain>
+                    </domain_architecture>
+                  </sequence>
+                </clade>
+              <clade>
+                <name>OS05G48200</name>
+                <branch_length>0.0757</branch_length>
+              <taxonomy>
+                    <code>osa</code>
+                  </taxonomy>
+                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/OS05G48200</property>
+                  <sequence>
+                    <domain_architecture length="2189">
+                      <domain confidence="4.3E-220" from="1678" to="2162">IPR006005</domain>
+                      <domain confidence="1.8E-156" from="935" to="1305">IPR002932</domain>
+                      <domain confidence="2.5E-66" from="1386" to="1573">IPR002489</domain>
+                      <domain confidence="1.1E-101" from="578" to="916">IPR013785</domain>
+                      <domain confidence="2.5E-40" from="1828" to="1917">IPR016040</domain>
+                      <domain confidence="1.0E-174" from="975" to="1345">IPR013785</domain>
+                      <domain confidence="3.56E-35" from="1676" to="1835">IPR009051</domain>
+                      <domain confidence="2.5E-40" from="2097" to="2170">IPR016040</domain>
+                      <domain confidence="3.4E-107" from="1363" to="1635">IPR002489</domain>
+                      <domain confidence="3.2E-17" from="1826" to="2139">IPR023753</domain>
+                      <domain confidence="2.0E-117" from="581" to="869">IPR006982</domain>
+                      <domain confidence="5.4E-142" from="107" to="483">IPR000583</domain>
+                      <domain confidence="2.62E-98" from="1357" to="1622">IPR002489</domain>
+                      <domain confidence="24.213" from="107" to="511">IPR017932</domain>
+                      <domain confidence="3.7E-21" from="1703" to="1812">IPR028261</domain>
+                      <domain confidence="4.3E-5" from="1826" to="1898">IPR001327</domain>
+                    </domain_architecture>
+                  </sequence>
+                </clade>
+            </clade>
+          </clade>
+          <clade>
+            <branch_length>0.01949</branch_length>
+            <confidence type="bootstrap">100.0</confidence>
+            <clade>
+              <branch_length>0.0217</branch_length>
+              <confidence type="bootstrap">30.0</confidence>
+              <clade>
+                <branch_length>0.00376</branch_length>
+                <confidence type="bootstrap">95.0</confidence>
+                <clade>
+                  <branch_length>0.00877</branch_length>
+                  <confidence type="bootstrap">100.0</confidence>
+                  <clade>
+                    <branch_length>0.00935</branch_length>
+                    <confidence type="bootstrap">92.0</confidence>
+                    <clade>
+                      <branch_length>0.02732</branch_length>
+                      <confidence type="bootstrap">100.0</confidence>
+                      <clade>
+                        <branch_length>0.01312</branch_length>
+                        <confidence type="bootstrap">93.0</confidence>
+                        <clade>
+                          <branch_length>0.02731</branch_length>
+                          <confidence type="bootstrap">100.0</confidence>
+                          <clade>
+                            <name>MD07G019920</name>
+                            <branch_length>0.02041</branch_length>
+                          <taxonomy>
+                                <code>mdo</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/MD07G019920</property>
+                              <sequence>
+                                <domain_architecture length="2192">
+                                  <domain confidence="6.1E-5" from="1819" to="1871">IPR001327</domain>
+                                  <domain confidence="8.6E-23" from="1695" to="1806">IPR028261</domain>
+                                  <domain confidence="7.7E-102" from="560" to="898">IPR013785</domain>
+                                  <domain confidence="3.5E-18" from="1819" to="2133">IPR023753</domain>
+                                  <domain confidence="23.069" from="91" to="499">IPR017932</domain>
+                                  <domain confidence="2.7E-68" from="1377" to="1562">IPR002489</domain>
+                                  <domain confidence="8.8E-227" from="1673" to="2158">IPR006005</domain>
+                                  <domain confidence="3.3E-41" from="1821" to="1911">IPR016040</domain>
+                                  <domain confidence="1.5E-161" from="925" to="1296">IPR002932</domain>
+                                  <domain confidence="1.4E-179" from="964" to="1332">IPR013785</domain>
+                                  <domain confidence="3.3E-41" from="2093" to="2166">IPR016040</domain>
+                                  <domain confidence="2.4E-117" from="572" to="860">IPR006982</domain>
+                                  <domain confidence="1.9E-105" from="1354" to="1623">IPR002489</domain>
+                                  <domain confidence="2.4E-143" from="91" to="471">IPR000583</domain>
+                                  <domain confidence="1.1E-37" from="1671" to="1828">IPR009051</domain>
+                                  <domain confidence="1.23E-95" from="1348" to="1611">IPR002489</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                          <clade>
+                            <name>MD01G021760</name>
+                            <branch_length>0.00982</branch_length>
+                          <taxonomy>
+                                <code>mdo</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/MD01G021760</property>
+                              <sequence>
+                                <domain_architecture length="2229">
+                                  <domain confidence="1.3E-177" from="999" to="1367">IPR013785</domain>
+                                  <domain confidence="2.0E-227" from="1707" to="2192">IPR006005</domain>
+                                  <domain confidence="6.5E-119" from="607" to="895">IPR006982</domain>
+                                  <domain confidence="6.5E-104" from="595" to="933">IPR013785</domain>
+                                  <domain confidence="9.0E-23" from="1729" to="1840">IPR028261</domain>
+                                  <domain confidence="1.7E-40" from="1855" to="1945">IPR016040</domain>
+                                  <domain confidence="2.6E-69" from="1412" to="1597">IPR002489</domain>
+                                  <domain confidence="7.85E-37" from="1705" to="1862">IPR009051</domain>
+                                  <domain confidence="5.4E-5" from="1853" to="1918">IPR001327</domain>
+                                  <domain confidence="6.0E-160" from="961" to="1331">IPR002932</domain>
+                                  <domain confidence="3.3E-18" from="1853" to="2167">IPR023753</domain>
+                                  <domain confidence="22.1" from="110" to="534">IPR017932</domain>
+                                  <domain confidence="1.7E-40" from="2127" to="2215">IPR016040</domain>
+                                  <domain confidence="1.83E-96" from="1383" to="1646">IPR002489</domain>
+                                  <domain confidence="1.3E-106" from="1389" to="1658">IPR002489</domain>
+                                  <domain confidence="5.3E-139" from="138" to="506">IPR000583</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                        </clade>
+                        <clade>
+                          <name>PPE_002G29860</name>
+                          <branch_length>0.02249</branch_length>
+                        <taxonomy>
+                              <code>ppe</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PPE_002G29860</property>
+                            <sequence>
+                              <domain_architecture length="2208">
+                                <domain confidence="4.03E-37" from="1684" to="1841">IPR009051</domain>
+                                <domain confidence="1.2E-39" from="2106" to="2177">IPR016040</domain>
+                                <domain confidence="2.0E-105" from="1364" to="1635">IPR002489</domain>
+                                <domain confidence="9.4E-180" from="974" to="1344">IPR013785</domain>
+                                <domain confidence="3.1E-225" from="1686" to="2169">IPR006005</domain>
+                                <domain confidence="23.534" from="105" to="509">IPR017932</domain>
+                                <domain confidence="5.1E-17" from="1832" to="2146">IPR023753</domain>
+                                <domain confidence="1.2E-39" from="1834" to="1924">IPR016040</domain>
+                                <domain confidence="5.0E-103" from="567" to="908">IPR013785</domain>
+                                <domain confidence="5.8E-5" from="1832" to="1903">IPR001327</domain>
+                                <domain confidence="7.1E-145" from="105" to="481">IPR000583</domain>
+                                <domain confidence="7.72E-96" from="1358" to="1621">IPR002489</domain>
+                                <domain confidence="4.7E-68" from="1387" to="1573">IPR002489</domain>
+                                <domain confidence="1.2E-22" from="1708" to="1819">IPR028261</domain>
+                                <domain confidence="3.2E-161" from="936" to="1306">IPR002932</domain>
+                                <domain confidence="3.4E-117" from="582" to="870">IPR006982</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                      </clade>
+                      <clade>
+                        <name>FV7G36200</name>
+                        <branch_length>0.03934</branch_length>
+                      <taxonomy>
+                            <code>fve</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/FV7G36200</property>
+                          <sequence>
+                            <domain_architecture length="2311">
+                              <domain confidence="3.0E-161" from="938" to="1308">IPR002932</domain>
+                              <domain confidence="5.6E-69" from="1389" to="1578">IPR002489</domain>
+                              <domain confidence="5.0E-40" from="1856" to="1946">IPR016040</domain>
+                              <domain confidence="5.0E-40" from="2124" to="2206">IPR016040</domain>
+                              <domain confidence="1.5E-103" from="570" to="910">IPR013785</domain>
+                              <domain confidence="9.3E-107" from="1366" to="1634">IPR002489</domain>
+                              <domain confidence="2.6E-118" from="584" to="872">IPR006982</domain>
+                              <domain confidence="2.46E-36" from="1706" to="1863">IPR009051</domain>
+                              <domain confidence="2.4E-225" from="1708" to="2193">IPR006005</domain>
+                              <domain confidence="23.321" from="107" to="511">IPR017932</domain>
+                              <domain confidence="9.0E-145" from="107" to="483">IPR000583</domain>
+                              <domain confidence="1.57E-98" from="1360" to="1624">IPR002489</domain>
+                              <domain confidence="3.3E-22" from="1731" to="1841">IPR028261</domain>
+                              <domain confidence="4.8E-19" from="1854" to="2168">IPR023753</domain>
+                              <domain confidence="1.3E-4" from="1854" to="1891">IPR001327</domain>
+                              <domain confidence="8.5E-180" from="957" to="1348">IPR013785</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                    </clade>
+                    <clade>
+                      <branch_length>0.00931</branch_length>
+                      <confidence type="bootstrap">89.0</confidence>
+                      <clade>
+                        <branch_length>0.05318</branch_length>
+                        <confidence type="bootstrap">100.0</confidence>
+                        <clade>
+                          <name>CL05G10060</name>
+                          <branch_length>0.00918</branch_length>
+                        <taxonomy>
+                              <code>cla</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CL05G10060</property>
+                            <sequence>
+                              <domain_architecture length="2224">
+                                <domain confidence="2.1E-161" from="945" to="1316">IPR002932</domain>
+                                <domain confidence="1.2E-118" from="592" to="880">IPR006982</domain>
+                                <domain confidence="1.6E-19" from="1846" to="2160">IPR023753</domain>
+                                <domain confidence="2.6E-5" from="1846" to="1883">IPR001327</domain>
+                                <domain confidence="1.8E-105" from="588" to="918">IPR013785</domain>
+                                <domain confidence="23.786" from="114" to="521">IPR017932</domain>
+                                <domain confidence="7.2E-181" from="983" to="1353">IPR013785</domain>
+                                <domain confidence="2.9E-108" from="1374" to="1643">IPR002489</domain>
+                                <domain confidence="1.5E-225" from="1700" to="2185">IPR006005</domain>
+                                <domain confidence="1.5E-22" from="1725" to="1833">IPR028261</domain>
+                                <domain confidence="8.63E-99" from="1367" to="1631">IPR002489</domain>
+                                <domain confidence="1.1E-143" from="114" to="493">IPR000583</domain>
+                                <domain confidence="8.37E-36" from="1698" to="1855">IPR009051</domain>
+                                <domain confidence="1.5E-67" from="1397" to="1586">IPR002489</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                        <clade>
+                          <name>CM00008G04360</name>
+                          <branch_length>0.01634</branch_length>
+                        <taxonomy>
+                              <code>cme</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CM00008G04360</property>
+                            <sequence>
+                              <domain_architecture length="2031">
+                                <domain confidence="2.0E-112" from="1" to="301">IPR000583</domain>
+                                <domain confidence="5.6E-228" from="1507" to="1992">IPR006005</domain>
+                                <domain confidence="9.5E-23" from="1529" to="1640">IPR028261</domain>
+                                <domain confidence="1.1E-107" from="1181" to="1448">IPR002489</domain>
+                                <domain confidence="2.1E-104" from="390" to="725">IPR013785</domain>
+                                <domain confidence="1.5E-160" from="752" to="1123">IPR002932</domain>
+                                <domain confidence="14.697" from="1" to="329">IPR017932</domain>
+                                <domain confidence="1.9E-5" from="1653" to="1688">IPR001327</domain>
+                                <domain confidence="5.0E-19" from="1653" to="1967">IPR023753</domain>
+                                <domain confidence="5.8E-180" from="790" to="1160">IPR013785</domain>
+                                <domain confidence="5.7E-118" from="398" to="687">IPR006982</domain>
+                                <domain confidence="9.81E-99" from="1174" to="1438">IPR002489</domain>
+                                <domain confidence="5.75E-36" from="1506" to="1662">IPR009051</domain>
+                                <domain confidence="5.3E-68" from="1204" to="1393">IPR002489</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                      </clade>
+                      <clade>
+                        <branch_length>0.04295</branch_length>
+                        <confidence type="bootstrap">100.0</confidence>
+                        <clade>
+                          <branch_length>0.04096</branch_length>
+                          <confidence type="bootstrap">100.0</confidence>
+                          <clade>
+                            <name>GM06G13280</name>
+                            <branch_length>0.01261</branch_length>
+                          <taxonomy>
+                                <code>gma</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GM06G13280</property>
+                              <sequence>
+                                <domain_architecture length="2189">
+                                  <domain confidence="1.1E-106" from="1354" to="1623">IPR002489</domain>
+                                  <domain confidence="6.3E-226" from="1679" to="2164">IPR006005</domain>
+                                  <domain confidence="1.8E-22" from="1701" to="1812">IPR028261</domain>
+                                  <domain confidence="2.8E-162" from="925" to="1296">IPR002932</domain>
+                                  <domain confidence="2.1E-39" from="1827" to="1916">IPR016040</domain>
+                                  <domain confidence="5.75E-36" from="1678" to="1833">IPR009051</domain>
+                                  <domain confidence="7.8E-68" from="1377" to="1570">IPR002489</domain>
+                                  <domain confidence="4.45E-99" from="1348" to="1611">IPR002489</domain>
+                                  <domain confidence="23.224" from="97" to="499">IPR017932</domain>
+                                  <domain confidence="1.3E-15" from="1825" to="2139">IPR023753</domain>
+                                  <domain confidence="2.1E-39" from="2097" to="2171">IPR016040</domain>
+                                  <domain confidence="9.4E-180" from="962" to="1333">IPR013785</domain>
+                                  <domain confidence="7.9E-118" from="572" to="860">IPR006982</domain>
+                                  <domain confidence="2.6E-143" from="97" to="471">IPR000583</domain>
+                                  <domain confidence="3.5E-5" from="1825" to="1859">IPR001327</domain>
+                                  <domain confidence="9.7E-104" from="569" to="908">IPR013785</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                          <clade>
+                            <name>GM04G41540</name>
+                            <branch_length>0.00785</branch_length>
+                          <taxonomy>
+                                <code>gma</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GM04G41540</property>
+                              <sequence>
+                                <domain_architecture length="2192">
+                                  <domain confidence="1.1E-22" from="1698" to="1809">IPR028261</domain>
+                                  <domain confidence="3.6E-68" from="1376" to="1569">IPR002489</domain>
+                                  <domain confidence="2.8E-118" from="571" to="859">IPR006982</domain>
+                                  <domain confidence="1.57E-99" from="1347" to="1611">IPR002489</domain>
+                                  <domain confidence="6.8E-36" from="1675" to="1830">IPR009051</domain>
+                                  <domain confidence="4.7E-103" from="566" to="909">IPR013785</domain>
+                                  <domain confidence="6.1E-162" from="924" to="1295">IPR002932</domain>
+                                  <domain confidence="2.0E-180" from="963" to="1335">IPR013785</domain>
+                                  <domain confidence="5.4E-226" from="1676" to="2161">IPR006005</domain>
+                                  <domain confidence="3.4E-142" from="97" to="470">IPR000583</domain>
+                                  <domain confidence="3.7E-39" from="2094" to="2168">IPR016040</domain>
+                                  <domain confidence="3.7E-39" from="1824" to="1914">IPR016040</domain>
+                                  <domain confidence="23.496" from="97" to="498">IPR017932</domain>
+                                  <domain confidence="3.1E-107" from="1353" to="1623">IPR002489</domain>
+                                  <domain confidence="2.4E-15" from="1822" to="2136">IPR023753</domain>
+                                  <domain confidence="3.1E-5" from="1822" to="1859">IPR001327</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                        </clade>
+                        <clade>
+                          <branch_length>0.01435</branch_length>
+                          <confidence type="bootstrap">98.0</confidence>
+                          <clade>
+                            <branch_length>0.01562</branch_length>
+                            <confidence type="bootstrap">100.0</confidence>
+                            <clade>
+                              <name>GM19G16486</name>
+                              <branch_length>0.01946</branch_length>
+                            <taxonomy>
+                                  <code>gma</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GM19G16486</property>
+                                <sequence>
+                                  <domain_architecture length="1896">
+                                    <domain confidence="3.4E-69" from="1075" to="1265">IPR002489</domain>
+                                    <domain confidence="8.3E-69" from="4" to="169">IPR000583</domain>
+                                    <domain confidence="6.1E-223" from="1374" to="1859">IPR006005</domain>
+                                    <domain confidence="4.97E-100" from="1046" to="1310">IPR002489</domain>
+                                    <domain confidence="14.193" from="1" to="197">IPR017932</domain>
+                                    <domain confidence="2.5E-100" from="265" to="595">IPR013785</domain>
+                                    <domain confidence="9.8E-118" from="270" to="558">IPR006982</domain>
+                                    <domain confidence="8.1E-16" from="1520" to="1834">IPR023753</domain>
+                                    <domain confidence="9.8E-179" from="661" to="1034">IPR013785</domain>
+                                    <domain confidence="2.0E-39" from="1792" to="1888">IPR016040</domain>
+                                    <domain confidence="6.0E-161" from="624" to="994">IPR002932</domain>
+                                    <domain confidence="5.3E-5" from="1520" to="1554">IPR001327</domain>
+                                    <domain confidence="1.0E-22" from="1396" to="1507">IPR028261</domain>
+                                    <domain confidence="3.61E-36" from="1372" to="1528">IPR009051</domain>
+                                    <domain confidence="3.7E-108" from="1052" to="1319">IPR002489</domain>
+                                    <domain confidence="2.0E-39" from="1522" to="1611">IPR016040</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                            <clade>
+                              <name>GM14G32500</name>
+                              <branch_length>0.01671</branch_length>
+                            <taxonomy>
+                                  <code>gma</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GM14G32500</property>
+                                <sequence>
+                                  <domain_architecture length="2124">
+                                    <domain confidence="3.3E-24" from="1665" to="1761">IPR009051</domain>
+                                    <domain confidence="3.5E-5" from="1753" to="1790">IPR001327</domain>
+                                    <domain confidence="1.8E-107" from="1354" to="1621">IPR002489</domain>
+                                    <domain confidence="2.5E-142" from="98" to="471">IPR000583</domain>
+                                    <domain confidence="9.5E-206" from="1661" to="2092">IPR006005</domain>
+                                    <domain confidence="7.9E-161" from="926" to="1296">IPR002932</domain>
+                                    <domain confidence="2.1E-178" from="963" to="1336">IPR013785</domain>
+                                    <domain confidence="2.9E-16" from="1753" to="2067">IPR023753</domain>
+                                    <domain confidence="4.9E-68" from="1377" to="1566">IPR002489</domain>
+                                    <domain confidence="4.6E-18" from="1660" to="1740">IPR028261</domain>
+                                    <domain confidence="5.4E-118" from="572" to="860">IPR006982</domain>
+                                    <domain confidence="2.75E-99" from="1348" to="1612">IPR002489</domain>
+                                    <domain confidence="1.3E-102" from="561" to="897">IPR013785</domain>
+                                    <domain confidence="23.399" from="98" to="499">IPR017932</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                          </clade>
+                          <clade>
+                            <name>MT1G027020</name>
+                            <branch_length>0.05076</branch_length>
+                          <taxonomy>
+                                <code>mtr</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/MT1G027020</property>
+                              <sequence>
+                                <domain_architecture length="2195">
+                                  <domain confidence="23.476" from="102" to="503">IPR017932</domain>
+                                  <domain confidence="5.18E-36" from="1678" to="1834">IPR009051</domain>
+                                  <domain confidence="1.1E-106" from="1358" to="1627">IPR002489</domain>
+                                  <domain confidence="2.7E-143" from="102" to="475">IPR000583</domain>
+                                  <domain confidence="1.1E-22" from="1705" to="1813">IPR028261</domain>
+                                  <domain confidence="2.0E-17" from="1826" to="2140">IPR023753</domain>
+                                  <domain confidence="2.6E-177" from="968" to="1338">IPR013785</domain>
+                                  <domain confidence="5.0E-69" from="1381" to="1570">IPR002489</domain>
+                                  <domain confidence="1.1E-160" from="929" to="1300">IPR002932</domain>
+                                  <domain confidence="1.3E-39" from="2098" to="2171">IPR016040</domain>
+                                  <domain confidence="5.2E-119" from="576" to="864">IPR006982</domain>
+                                  <domain confidence="8.3E-5" from="1826" to="1860">IPR001327</domain>
+                                  <domain confidence="1.3E-39" from="1828" to="1917">IPR016040</domain>
+                                  <domain confidence="4.6E-226" from="1680" to="2165">IPR006005</domain>
+                                  <domain confidence="4.5E-105" from="565" to="902">IPR013785</domain>
+                                  <domain confidence="6.54E-99" from="1352" to="1616">IPR002489</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                        </clade>
+                      </clade>
+                    </clade>
+                  </clade>
+                  <clade>
+                    <name>EG0001G12000</name>
+                    <branch_length>0.0581</branch_length>
+                  <taxonomy>
+                        <code>egr</code>
+                      </taxonomy>
+                      <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/EG0001G12000</property>
+                      <sequence>
+                        <domain_architecture length="2219">
+                          <domain confidence="3.4E-160" from="944" to="1314">IPR002932</domain>
+                          <domain confidence="2.88E-36" from="1696" to="1853">IPR009051</domain>
+                          <domain confidence="23.496" from="113" to="517">IPR017932</domain>
+                          <domain confidence="1.02E-97" from="1366" to="1629">IPR002489</domain>
+                          <domain confidence="5.6E-179" from="987" to="1354">IPR013785</domain>
+                          <domain confidence="9.6E-119" from="590" to="878">IPR006982</domain>
+                          <domain confidence="2.8E-104" from="581" to="916">IPR013785</domain>
+                          <domain confidence="5.3E-145" from="113" to="489">IPR000583</domain>
+                          <domain confidence="1.0E-106" from="1372" to="1643">IPR002489</domain>
+                          <domain confidence="4.8E-226" from="1698" to="2182">IPR006005</domain>
+                          <domain confidence="2.5E-67" from="1395" to="1587">IPR002489</domain>
+                          <domain confidence="1.6E-17" from="1844" to="2158">IPR023753</domain>
+                          <domain confidence="1.2E-22" from="1720" to="1831">IPR028261</domain>
+                        </domain_architecture>
+                      </sequence>
+                    </clade>
+                </clade>
+                <clade>
+                  <branch_length>0.00578</branch_length>
+                  <confidence type="bootstrap">42.0</confidence>
+                  <clade>
+                    <branch_length>0.01143</branch_length>
+                    <confidence type="bootstrap">53.0</confidence>
+                    <clade>
+                      <branch_length>0.05501</branch_length>
+                      <confidence type="bootstrap">100.0</confidence>
+                      <clade>
+                        <name>ST03G013400</name>
+                        <branch_length>0.00453</branch_length>
+                      <taxonomy>
+                            <code>stu</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ST03G013400</property>
+                          <sequence>
+                            <domain_architecture length="2211">
+                              <domain confidence="2.0E-143" from="118" to="494">IPR000583</domain>
+                              <domain confidence="6.2E-228" from="1702" to="2187">IPR006005</domain>
+                              <domain confidence="5.2E-103" from="588" to="922">IPR013785</domain>
+                              <domain confidence="6.28E-36" from="1700" to="1856">IPR009051</domain>
+                              <domain confidence="2.1E-18" from="1848" to="2162">IPR023753</domain>
+                              <domain confidence="1.57E-98" from="1371" to="1635">IPR002489</domain>
+                              <domain confidence="4.8E-108" from="1378" to="1647">IPR002489</domain>
+                              <domain confidence="8.7E-6" from="1848" to="1919">IPR001327</domain>
+                              <domain confidence="4.3E-118" from="595" to="883">IPR006982</domain>
+                              <domain confidence="1.2E-41" from="1850" to="1939">IPR016040</domain>
+                              <domain confidence="1.8E-22" from="1724" to="1835">IPR028261</domain>
+                              <domain confidence="1.2E-41" from="2120" to="2200">IPR016040</domain>
+                              <domain confidence="1.9E-160" from="949" to="1319">IPR002932</domain>
+                              <domain confidence="23.496" from="118" to="522">IPR017932</domain>
+                              <domain confidence="1.7E-178" from="986" to="1359">IPR013785</domain>
+                              <domain confidence="5.2E-68" from="1400" to="1592">IPR002489</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                      <clade>
+                        <name>SL03G083440</name>
+                        <branch_length>0.00744</branch_length>
+                      <taxonomy>
+                            <code>sly</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/SL03G083440</property>
+                          <sequence>
+                            <domain_architecture length="2227">
+                              <domain confidence="1.9E-18" from="1864" to="2178">IPR023753</domain>
+                              <domain confidence="1.2E-142" from="134" to="510">IPR000583</domain>
+                              <domain confidence="1.0E-160" from="965" to="1335">IPR002932</domain>
+                              <domain confidence="1.0E-178" from="1002" to="1375">IPR013785</domain>
+                              <domain confidence="6.0E-68" from="1416" to="1609">IPR002489</domain>
+                              <domain confidence="8.8E-6" from="1864" to="1935">IPR001327</domain>
+                              <domain confidence="1.8E-103" from="604" to="938">IPR013785</domain>
+                              <domain confidence="2.3E-22" from="1741" to="1851">IPR028261</domain>
+                              <domain confidence="1.26E-35" from="1716" to="1872">IPR009051</domain>
+                              <domain confidence="1.2E-41" from="2136" to="2216">IPR016040</domain>
+                              <domain confidence="23.437" from="134" to="538">IPR017932</domain>
+                              <domain confidence="1.2E-41" from="1866" to="1955">IPR016040</domain>
+                              <domain confidence="6.28E-99" from="1387" to="1651">IPR002489</domain>
+                              <domain confidence="4.6E-227" from="1718" to="2203">IPR006005</domain>
+                              <domain confidence="1.9E-118" from="611" to="899">IPR006982</domain>
+                              <domain confidence="8.3E-108" from="1393" to="1663">IPR002489</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                    </clade>
+                    <clade>
+                      <branch_length>0.06267</branch_length>
+                      <confidence type="bootstrap">100.0</confidence>
+                      <clade>
+                        <branch_length>0.00973</branch_length>
+                        <confidence type="bootstrap">98.0</confidence>
+                        <clade>
+                          <name>BR03G13520</name>
+                          <branch_length>0.01725</branch_length>
+                        <taxonomy>
+                              <code>bra</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/BR03G13520</property>
+                            <sequence>
+                              <domain_architecture length="2200">
+                                <domain confidence="3.2E-107" from="1366" to="1635">IPR002489</domain>
+                                <domain confidence="23.224" from="107" to="511">IPR017932</domain>
+                                <domain confidence="5.6E-120" from="583" to="872">IPR006982</domain>
+                                <domain confidence="4.4E-144" from="107" to="483">IPR000583</domain>
+                                <domain confidence="2.1E-68" from="1389" to="1582">IPR002489</domain>
+                                <domain confidence="5.9E-224" from="1694" to="2178">IPR006005</domain>
+                                <domain confidence="1.6E-22" from="1717" to="1827">IPR028261</domain>
+                                <domain confidence="3.7E-5" from="1840" to="1910">IPR001327</domain>
+                                <domain confidence="6.5E-159" from="937" to="1308">IPR002932</domain>
+                                <domain confidence="1.1E-36" from="1692" to="1849">IPR009051</domain>
+                                <domain confidence="1.9E-178" from="956" to="1348">IPR013785</domain>
+                                <domain confidence="1.1E-105" from="574" to="913">IPR013785</domain>
+                                <domain confidence="1.1E-18" from="1840" to="2154">IPR023753</domain>
+                                <domain confidence="1.02E-98" from="1360" to="1625">IPR002489</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                        <clade>
+                          <name>TP6G15590</name>
+                          <branch_length>0.00924</branch_length>
+                        <taxonomy>
+                              <code>tpa</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/TP6G15590</property>
+                            <sequence>
+                              <domain_architecture length="2210">
+                                <domain confidence="3.3E-22" from="1726" to="1834">IPR028261</domain>
+                                <domain confidence="5.7E-105" from="586" to="925">IPR013785</domain>
+                                <domain confidence="1.31E-98" from="1369" to="1635">IPR002489</domain>
+                                <domain confidence="1.5E-224" from="1702" to="2186">IPR006005</domain>
+                                <domain confidence="2.4E-178" from="965" to="1357">IPR013785</domain>
+                                <domain confidence="2.46E-36" from="1700" to="1857">IPR009051</domain>
+                                <domain confidence="23.224" from="116" to="520">IPR017932</domain>
+                                <domain confidence="5.8E-19" from="1848" to="2162">IPR023753</domain>
+                                <domain confidence="5.9E-108" from="1375" to="1644">IPR002489</domain>
+                                <domain confidence="5.3E-120" from="592" to="881">IPR006982</domain>
+                                <domain confidence="1.2E-143" from="116" to="492">IPR000583</domain>
+                                <domain confidence="6.9E-68" from="1398" to="1590">IPR002489</domain>
+                                <domain confidence="4.7E-159" from="946" to="1317">IPR002932</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                      </clade>
+                      <clade>
+                        <branch_length>0.01019</branch_length>
+                        <confidence type="bootstrap">98.0</confidence>
+                        <clade>
+                          <branch_length>0.01008</branch_length>
+                          <confidence type="bootstrap">100.0</confidence>
+                          <clade>
+                            <name>AL8G18120</name>
+                            <branch_length>0.00209</branch_length>
+                          <taxonomy>
+                                <code>aly</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/AL8G18120</property>
+                              <sequence>
+                                <domain_architecture length="2208">
+                                  <domain confidence="23.205" from="117" to="521">IPR017932</domain>
+                                  <domain confidence="1.2E-223" from="1700" to="2184">IPR006005</domain>
+                                  <domain confidence="3.4E-5" from="1846" to="1883">IPR001327</domain>
+                                  <domain confidence="8.6E-20" from="1846" to="2160">IPR023753</domain>
+                                  <domain confidence="3.71E-36" from="1698" to="1855">IPR009051</domain>
+                                  <domain confidence="2.3E-107" from="1376" to="1645">IPR002489</domain>
+                                  <domain confidence="3.6E-144" from="117" to="493">IPR000583</domain>
+                                  <domain confidence="1.9E-177" from="966" to="1358">IPR013785</domain>
+                                  <domain confidence="3.6E-104" from="583" to="921">IPR013785</domain>
+                                  <domain confidence="2.88E-98" from="1370" to="1636">IPR002489</domain>
+                                  <domain confidence="2.6E-120" from="593" to="882">IPR006982</domain>
+                                  <domain confidence="1.1E-159" from="947" to="1318">IPR002932</domain>
+                                  <domain confidence="1.8E-22" from="1724" to="1833">IPR028261</domain>
+                                  <domain confidence="6.6E-68" from="1399" to="1592">IPR002489</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                          <clade>
+                            <name>AT5G53460</name>
+                            <branch_length>0.0056</branch_length>
+                          <taxonomy>
+                                <code>ath</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/AT5G53460</property>
+                              <sequence>
+                                <domain_architecture length="2209">
+                                  <domain confidence="2.6E-120" from="593" to="882">IPR006982</domain>
+                                  <domain confidence="5.75E-36" from="1700" to="1856">IPR009051</domain>
+                                  <domain confidence="6.2E-67" from="1399" to="1592">IPR002489</domain>
+                                  <domain confidence="23.147" from="117" to="521">IPR017932</domain>
+                                  <domain confidence="4.5E-178" from="966" to="1358">IPR013785</domain>
+                                  <domain confidence="2.7E-39" from="1849" to="1938">IPR016040</domain>
+                                  <domain confidence="2.7E-39" from="2119" to="2194">IPR016040</domain>
+                                  <domain confidence="7.2E-144" from="117" to="493">IPR000583</domain>
+                                  <domain confidence="4.5E-104" from="583" to="924">IPR013785</domain>
+                                  <domain confidence="1.2E-159" from="947" to="1318">IPR002932</domain>
+                                  <domain confidence="2.9E-223" from="1701" to="2185">IPR006005</domain>
+                                  <domain confidence="7.1E-19" from="1847" to="2161">IPR023753</domain>
+                                  <domain confidence="6.93E-98" from="1370" to="1636">IPR002489</domain>
+                                  <domain confidence="3.4E-107" from="1376" to="1645">IPR002489</domain>
+                                  <domain confidence="1.8E-22" from="1725" to="1834">IPR028261</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                        </clade>
+                        <clade>
+                          <name>CRU_008G13300</name>
+                          <branch_length>0.00714</branch_length>
+                        <taxonomy>
+                              <code>cru</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CRU_008G13300</property>
+                            <sequence>
+                              <domain_architecture length="2209">
+                                <domain confidence="6.4E-224" from="1702" to="2186">IPR006005</domain>
+                                <domain confidence="2.41E-36" from="1700" to="1857">IPR009051</domain>
+                                <domain confidence="23.108" from="116" to="520">IPR017932</domain>
+                                <domain confidence="3.1E-159" from="946" to="1317">IPR002932</domain>
+                                <domain confidence="1.2E-120" from="592" to="881">IPR006982</domain>
+                                <domain confidence="2.3E-178" from="965" to="1357">IPR013785</domain>
+                                <domain confidence="1.7E-22" from="1726" to="1835">IPR028261</domain>
+                                <domain confidence="1.7E-98" from="1369" to="1635">IPR002489</domain>
+                                <domain confidence="1.2E-107" from="1375" to="1644">IPR002489</domain>
+                                <domain confidence="5.2E-68" from="1398" to="1591">IPR002489</domain>
+                                <domain confidence="3.7E-18" from="1848" to="2162">IPR023753</domain>
+                                <domain confidence="4.3E-145" from="116" to="492">IPR000583</domain>
+                                <domain confidence="3.2E-105" from="582" to="919">IPR013785</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                      </clade>
+                    </clade>
+                  </clade>
+                  <clade>
+                    <branch_length>0.01215</branch_length>
+                    <confidence type="bootstrap">94.0</confidence>
+                    <clade>
+                      <name>VV16G10380</name>
+                      <branch_length>0.03509</branch_length>
+                    <taxonomy>
+                          <code>vvi</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/VV16G10380</property>
+                        <sequence>
+                          <domain_architecture length="2217">
+                            <domain confidence="2.2E-105" from="591" to="922">IPR013785</domain>
+                            <domain confidence="6.8E-18" from="1851" to="2165">IPR023753</domain>
+                            <domain confidence="1.6E-40" from="2125" to="2198">IPR016040</domain>
+                            <domain confidence="3.1E-145" from="119" to="495">IPR000583</domain>
+                            <domain confidence="2.0E-22" from="1729" to="1838">IPR028261</domain>
+                            <domain confidence="7.2E-162" from="949" to="1320">IPR002932</domain>
+                            <domain confidence="3.7E-67" from="1401" to="1593">IPR002489</domain>
+                            <domain confidence="1.6E-40" from="1853" to="1942">IPR016040</domain>
+                            <domain confidence="6.5E-109" from="1378" to="1647">IPR002489</domain>
+                            <domain confidence="23.651" from="119" to="523">IPR017932</domain>
+                            <domain confidence="5.0E-226" from="1705" to="2190">IPR006005</domain>
+                            <domain confidence="1.5E-180" from="987" to="1360">IPR013785</domain>
+                            <domain confidence="1.3E-119" from="596" to="884">IPR006982</domain>
+                            <domain confidence="2.75E-98" from="1372" to="1637">IPR002489</domain>
+                            <domain confidence="9.42E-36" from="1703" to="1860">IPR009051</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                    <clade>
+                      <name>BV3G02260</name>
+                      <branch_length>0.08047</branch_length>
+                    <taxonomy>
+                          <code>bvu</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/BV3G02260</property>
+                        <sequence>
+                          <domain_architecture length="2210">
+                            <domain confidence="6.2E-103" from="576" to="917">IPR013785</domain>
+                            <domain confidence="2.75E-99" from="1366" to="1630">IPR002489</domain>
+                            <domain confidence="7.3E-5" from="1843" to="1877">IPR001327</domain>
+                            <domain confidence="3.4E-22" from="1720" to="1830">IPR028261</domain>
+                            <domain confidence="2.6E-67" from="1395" to="1588">IPR002489</domain>
+                            <domain confidence="5.6E-117" from="590" to="878">IPR006982</domain>
+                            <domain confidence="5.02E-36" from="1696" to="1851">IPR009051</domain>
+                            <domain confidence="23.767" from="113" to="517">IPR017932</domain>
+                            <domain confidence="6.2E-231" from="1697" to="2183">IPR006005</domain>
+                            <domain confidence="1.3E-144" from="113" to="489">IPR000583</domain>
+                            <domain confidence="4.4E-41" from="1845" to="1934">IPR016040</domain>
+                            <domain confidence="1.1E-157" from="943" to="1314">IPR002932</domain>
+                            <domain confidence="7.4E-16" from="1843" to="2157">IPR023753</domain>
+                            <domain confidence="4.4E-41" from="2115" to="2190">IPR016040</domain>
+                            <domain confidence="1.5E-107" from="1372" to="1636">IPR002489</domain>
+                            <domain confidence="1.1E-179" from="976" to="1354">IPR013785</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                  </clade>
+                </clade>
+              </clade>
+              <clade>
+                <branch_length>0.00374</branch_length>
+                <confidence type="bootstrap">40.0</confidence>
+                <clade>
+                  <branch_length>0.00348</branch_length>
+                  <confidence type="bootstrap">18.0</confidence>
+                  <clade>
+                    <branch_length>0.01535</branch_length>
+                    <confidence type="bootstrap">100.0</confidence>
+                    <clade>
+                      <name>TC0003G19640</name>
+                      <branch_length>0.01664</branch_length>
+                    <taxonomy>
+                          <code>tca</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/TC0003G19640</property>
+                        <sequence>
+                          <domain_architecture length="2118">
+                            <domain confidence="4.7E-5" from="1847" to="1884">IPR001327</domain>
+                            <domain confidence="8.4E-120" from="593" to="881">IPR006982</domain>
+                            <domain confidence="6.9E-180" from="984" to="1358">IPR013785</domain>
+                            <domain confidence="1.1E-20" from="1849" to="1945">IPR016040</domain>
+                            <domain confidence="3.53E-99" from="1369" to="1633">IPR002489</domain>
+                            <domain confidence="1.2E-35" from="1699" to="1855">IPR009051</domain>
+                            <domain confidence="2.0E-22" from="1723" to="1834">IPR028261</domain>
+                            <domain confidence="1.0E-143" from="116" to="492">IPR000583</domain>
+                            <domain confidence="2.1E-109" from="1375" to="1644">IPR002489</domain>
+                            <domain confidence="5.9E-193" from="1701" to="2117">IPR006005</domain>
+                            <domain confidence="2.6E-160" from="946" to="1317">IPR002932</domain>
+                            <domain confidence="6.5E-105" from="580" to="920">IPR013785</domain>
+                            <domain confidence="23.147" from="116" to="520">IPR017932</domain>
+                            <domain confidence="8.8E-68" from="1398" to="1591">IPR002489</domain>
+                            <domain confidence="3.3E-11" from="1848" to="2053">IPR023753</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                    <clade>
+                      <name>GR08G26960</name>
+                      <branch_length>0.01978</branch_length>
+                    <taxonomy>
+                          <code>gra</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GR08G26960</property>
+                        <sequence>
+                          <domain_architecture length="2210">
+                            <domain confidence="4.2E-119" from="591" to="879">IPR006982</domain>
+                            <domain confidence="2.8E-227" from="1695" to="2180">IPR006005</domain>
+                            <domain confidence="2.09E-35" from="1693" to="1849">IPR009051</domain>
+                            <domain confidence="1.6E-108" from="1373" to="1646">IPR002489</domain>
+                            <domain confidence="23.418" from="114" to="518">IPR017932</domain>
+                            <domain confidence="2.22E-98" from="1367" to="1632">IPR002489</domain>
+                            <domain confidence="6.2E-105" from="585" to="917">IPR013785</domain>
+                            <domain confidence="4.3E-180" from="981" to="1356">IPR013785</domain>
+                            <domain confidence="3.8E-41" from="1843" to="1932">IPR016040</domain>
+                            <domain confidence="3.6E-160" from="944" to="1315">IPR002932</domain>
+                            <domain confidence="7.7E-22" from="1718" to="1827">IPR028261</domain>
+                            <domain confidence="8.9E-145" from="114" to="490">IPR000583</domain>
+                            <domain confidence="6.3E-5" from="1841" to="1875">IPR001327</domain>
+                            <domain confidence="1.8E-67" from="1396" to="1587">IPR002489</domain>
+                            <domain confidence="6.6E-18" from="1842" to="2155">IPR023753</domain>
+                            <domain confidence="3.8E-41" from="2113" to="2202">IPR016040</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                  </clade>
+                  <clade>
+                    <name>CP00003G00680</name>
+                    <branch_length>0.10482</branch_length>
+                  <taxonomy>
+                        <code>cpa</code>
+                      </taxonomy>
+                      <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CP00003G00680</property>
+                      <sequence>
+                        <domain_architecture length="2013">
+                          <domain confidence="1.9E-22" from="1519" to="1629">IPR028261</domain>
+                          <domain confidence="3.5E-41" from="1914" to="2002">IPR016040</domain>
+                          <domain confidence="13.748" from="113" to="340">IPR017932</domain>
+                          <domain confidence="5.3E-17" from="1642" to="1956">IPR023753</domain>
+                          <domain confidence="4.39E-36" from="1494" to="1650">IPR009051</domain>
+                          <domain confidence="1.83E-97" from="1167" to="1431">IPR002489</domain>
+                          <domain confidence="2.4E-106" from="398" to="739">IPR013785</domain>
+                          <domain confidence="1.5E-110" from="767" to="1041">IPR002932</domain>
+                          <domain confidence="2.6E-6" from="1102" to="1155">IPR013785</domain>
+                          <domain confidence="8.5E-227" from="1496" to="1980">IPR006005</domain>
+                          <domain confidence="9.5E-5" from="1642" to="1679">IPR001327</domain>
+                          <domain confidence="2.6E-44" from="182" to="312">IPR000583</domain>
+                          <domain confidence="1.0E-15" from="113" to="173">IPR000583</domain>
+                          <domain confidence="3.5E-41" from="1644" to="1733">IPR016040</domain>
+                          <domain confidence="3.0E-113" from="789" to="1041">IPR013785</domain>
+                          <domain confidence="2.2E-66" from="1196" to="1388">IPR002489</domain>
+                          <domain confidence="6.5E-119" from="413" to="701">IPR006982</domain>
+                          <domain confidence="3.6E-105" from="1174" to="1440">IPR002489</domain>
+                        </domain_architecture>
+                      </sequence>
+                    </clade>
+                </clade>
+                <clade>
+                  <branch_length>0.00744</branch_length>
+                  <confidence type="bootstrap">89.0</confidence>
+                  <clade>
+                    <branch_length>0.03076</branch_length>
+                    <confidence type="bootstrap">100.0</confidence>
+                    <clade>
+                      <name>PT12G01170</name>
+                      <branch_length>0.0336</branch_length>
+                    <taxonomy>
+                          <code>ptr</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PT12G01170</property>
+                        <sequence>
+                          <domain_architecture length="2231">
+                            <domain confidence="2.4E-160" from="953" to="1324">IPR002932</domain>
+                            <domain confidence="5.6E-144" from="123" to="499">IPR000583</domain>
+                            <domain confidence="6.02E-99" from="1376" to="1641">IPR002489</domain>
+                            <domain confidence="2.8E-108" from="1382" to="1651">IPR002489</domain>
+                            <domain confidence="22.255" from="123" to="527">IPR017932</domain>
+                            <domain confidence="1.1E-4" from="1856" to="1926">IPR001327</domain>
+                            <domain confidence="5.7E-17" from="1856" to="2170">IPR023753</domain>
+                            <domain confidence="1.5E-102" from="595" to="926">IPR013785</domain>
+                            <domain confidence="8.8E-225" from="1708" to="2196">IPR006005</domain>
+                            <domain confidence="1.1E-66" from="1405" to="1598">IPR002489</domain>
+                            <domain confidence="1.6E-40" from="2130" to="2215">IPR016040</domain>
+                            <domain confidence="1.7E-117" from="600" to="888">IPR006982</domain>
+                            <domain confidence="5.23E-35" from="1706" to="1864">IPR009051</domain>
+                            <domain confidence="9.2E-179" from="991" to="1364">IPR013785</domain>
+                            <domain confidence="6.3E-22" from="1731" to="1843">IPR028261</domain>
+                            <domain confidence="1.6E-40" from="1858" to="1947">IPR016040</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                    <clade>
+                      <name>PT15G01750</name>
+                      <branch_length>0.0181</branch_length>
+                    <taxonomy>
+                          <code>ptr</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PT15G01750</property>
+                        <sequence>
+                          <domain_architecture length="2222">
+                            <domain confidence="6.9E-179" from="989" to="1363">IPR013785</domain>
+                            <domain confidence="5.6E-66" from="1403" to="1596">IPR002489</domain>
+                            <domain confidence="1.31E-98" from="1374" to="1639">IPR002489</domain>
+                            <domain confidence="3.4E-39" from="1856" to="1946">IPR016040</domain>
+                            <domain confidence="2.7E-103" from="583" to="924">IPR013785</domain>
+                            <domain confidence="2.2E-117" from="598" to="886">IPR006982</domain>
+                            <domain confidence="3.4E-39" from="2117" to="2209">IPR016040</domain>
+                            <domain confidence="3.71E-35" from="1707" to="1862">IPR009051</domain>
+                            <domain confidence="8.3E-5" from="1854" to="1901">IPR001327</domain>
+                            <domain confidence="8.1E-14" from="1854" to="2161">IPR023753</domain>
+                            <domain confidence="9.6E-23" from="1730" to="1841">IPR028261</domain>
+                            <domain confidence="23.496" from="121" to="525">IPR017932</domain>
+                            <domain confidence="6.6E-108" from="1380" to="1649">IPR002489</domain>
+                            <domain confidence="1.1E-216" from="1708" to="2187">IPR006005</domain>
+                            <domain confidence="2.0E-144" from="121" to="497">IPR000583</domain>
+                            <domain confidence="5.0E-161" from="951" to="1322">IPR002932</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                  </clade>
+                  <clade>
+                    <branch_length>0.00484</branch_length>
+                    <confidence type="bootstrap">40.0</confidence>
+                    <clade>
+                      <branch_length>0.00517</branch_length>
+                      <confidence type="bootstrap">87.0</confidence>
+                      <clade>
+                        <branch_length>0.0099</branch_length>
+                        <confidence type="bootstrap">98.0</confidence>
+                        <clade>
+                          <name>ME06089G00070</name>
+                          <branch_length>0.02234</branch_length>
+                        <taxonomy>
+                              <code>mes</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ME06089G00070</property>
+                            <sequence>
+                              <domain_architecture length="2224">
+                                <domain confidence="2.1E-106" from="1380" to="1645">IPR002489</domain>
+                                <domain confidence="1.2E-66" from="1403" to="1595">IPR002489</domain>
+                                <domain confidence="3.6E-160" from="945" to="1316">IPR002932</domain>
+                                <domain confidence="1.5E-17" from="1850" to="2163">IPR023753</domain>
+                                <domain confidence="5.8E-22" from="1727" to="1835">IPR028261</domain>
+                                <domain confidence="2.3E-104" from="580" to="918">IPR013785</domain>
+                                <domain confidence="2.62E-98" from="1374" to="1639">IPR002489</domain>
+                                <domain confidence="6.28E-36" from="1701" to="1858">IPR009051</domain>
+                                <domain confidence="1.3E-225" from="1703" to="2188">IPR006005</domain>
+                                <domain confidence="23.03" from="114" to="519">IPR017932</domain>
+                                <domain confidence="4.5E-180" from="983" to="1353">IPR013785</domain>
+                                <domain confidence="3.8E-119" from="592" to="880">IPR006982</domain>
+                                <domain confidence="5.0E-141" from="114" to="491">IPR000583</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                        <clade>
+                          <name>ME06633G00020</name>
+                          <branch_length>0.03547</branch_length>
+                        <taxonomy>
+                              <code>mes</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ME06633G00020</property>
+                            <sequence>
+                              <domain_architecture length="2215">
+                                <domain confidence="2.4E-22" from="1720" to="1831">IPR028261</domain>
+                                <domain confidence="23.011" from="115" to="519">IPR017932</domain>
+                                <domain confidence="5.5E-106" from="1374" to="1640">IPR002489</domain>
+                                <domain confidence="4.3E-144" from="115" to="491">IPR000583</domain>
+                                <domain confidence="1.67E-36" from="1696" to="1853">IPR009051</domain>
+                                <domain confidence="1.6E-103" from="576" to="918">IPR013785</domain>
+                                <domain confidence="1.8E-66" from="1397" to="1590">IPR002489</domain>
+                                <domain confidence="1.6E-17" from="1844" to="2158">IPR023753</domain>
+                                <domain confidence="2.2E-225" from="1698" to="2183">IPR006005</domain>
+                                <domain confidence="4.2E-119" from="592" to="880">IPR006982</domain>
+                                <domain confidence="2.1E-179" from="984" to="1357">IPR013785</domain>
+                                <domain confidence="7.4E-161" from="945" to="1315">IPR002932</domain>
+                                <domain confidence="8.11E-98" from="1367" to="1632">IPR002489</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                      </clade>
+                      <clade>
+                        <name>RC30169G02700</name>
+                        <branch_length>0.02629</branch_length>
+                      <taxonomy>
+                            <code>rco</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/RC30169G02700</property>
+                          <sequence>
+                            <domain_architecture length="2216">
+                              <domain confidence="1.9E-39" from="2116" to="2193">IPR016040</domain>
+                              <domain confidence="3.8E-225" from="1698" to="2184">IPR006005</domain>
+                              <domain confidence="4.6E-159" from="946" to="1317">IPR002932</domain>
+                              <domain confidence="1.1E-178" from="985" to="1358">IPR013785</domain>
+                              <domain confidence="1.1E-119" from="593" to="881">IPR006982</domain>
+                              <domain confidence="3.3E-18" from="1844" to="2158">IPR023753</domain>
+                              <domain confidence="7.2E-107" from="1375" to="1645">IPR002489</domain>
+                              <domain confidence="2.3E-104" from="581" to="919">IPR013785</domain>
+                              <domain confidence="23.263" from="116" to="520">IPR017932</domain>
+                              <domain confidence="1.0E-144" from="116" to="492">IPR000583</domain>
+                              <domain confidence="3.4E-98" from="1368" to="1633">IPR002489</domain>
+                              <domain confidence="1.05E-36" from="1697" to="1853">IPR009051</domain>
+                              <domain confidence="2.7E-22" from="1721" to="1831">IPR028261</domain>
+                              <domain confidence="1.4E-66" from="1398" to="1590">IPR002489</domain>
+                              <domain confidence="1.9E-39" from="1846" to="1935">IPR016040</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                    </clade>
+                    <clade>
+                      <name>CS00328G00100</name>
+                      <branch_length>0.04624</branch_length>
+                    <taxonomy>
+                          <code>csi</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CS00328G00100</property>
+                        <sequence>
+                          <domain_architecture length="1761">
+                            <domain confidence="1.44E-97" from="1367" to="1632">IPR002489</domain>
+                            <domain confidence="1.4E-144" from="115" to="491">IPR000583</domain>
+                            <domain confidence="1.6E-161" from="945" to="1316">IPR002932</domain>
+                            <domain confidence="2.3E-103" from="578" to="918">IPR013785</domain>
+                            <domain confidence="22.914" from="115" to="519">IPR017932</domain>
+                            <domain confidence="1.9E-105" from="1374" to="1645">IPR002489</domain>
+                            <domain confidence="1.1E-8" from="1698" to="1756">IPR009051</domain>
+                            <domain confidence="2.4E-118" from="592" to="880">IPR006982</domain>
+                            <domain confidence="1.6E-64" from="1397" to="1586">IPR002489</domain>
+                            <domain confidence="1.6E-179" from="983" to="1354">IPR013785</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                  </clade>
+                </clade>
+              </clade>
+            </clade>
+            <clade>
+              <name>ATR_00021G02760</name>
+              <branch_length>0.06922</branch_length>
+            <taxonomy>
+                  <code>atr</code>
+                </taxonomy>
+                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ATR_00021G02760</property>
+                <sequence>
+                  <domain_architecture length="2202">
+                    <domain confidence="3.61E-36" from="1688" to="1845">IPR009051</domain>
+                    <domain confidence="5.8E-103" from="573" to="914">IPR013785</domain>
+                    <domain confidence="3.5E-40" from="2108" to="2195">IPR016040</domain>
+                    <domain confidence="3.4E-181" from="978" to="1352">IPR013785</domain>
+                    <domain confidence="3.5E-40" from="1838" to="1928">IPR016040</domain>
+                    <domain confidence="6.2E-142" from="110" to="486">IPR000583</domain>
+                    <domain confidence="5.4E-17" from="1836" to="2150">IPR023753</domain>
+                    <domain confidence="1.3E-67" from="1391" to="1584">IPR002489</domain>
+                    <domain confidence="5.7E-110" from="1370" to="1642">IPR002489</domain>
+                    <domain confidence="9.1E-160" from="940" to="1311">IPR002932</domain>
+                    <domain confidence="22.875" from="110" to="514">IPR017932</domain>
+                    <domain confidence="4.19E-99" from="1362" to="1628">IPR002489</domain>
+                    <domain confidence="2.1E-226" from="1690" to="2174">IPR006005</domain>
+                    <domain confidence="1.2E-22" from="1712" to="1823">IPR028261</domain>
+                    <domain confidence="1.7E-117" from="587" to="875">IPR006982</domain>
+                  </domain_architecture>
+                </sequence>
+              </clade>
+          </clade>
+        </clade>
+      </clade>
+      <clade>
+        <name>CR13G06830</name>
+        <branch_length>0.32429</branch_length>
+      <taxonomy>
+            <code>cre</code>
+          </taxonomy>
+          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CR13G06830</property>
+          <sequence>
+            <domain_architecture length="2252">
+              <domain confidence="1.3E-98" from="562" to="904">IPR013785</domain>
+              <domain confidence="1.9E-156" from="924" to="1295">IPR002932</domain>
+              <domain confidence="9.5E-23" from="1759" to="1856">IPR028261</domain>
+              <domain confidence="3.53E-89" from="1349" to="1619">IPR002489</domain>
+              <domain confidence="2.4E-221" from="1720" to="2206">IPR006005</domain>
+              <domain confidence="3.5E-136" from="60" to="434">IPR000583</domain>
+              <domain confidence="4.97E-34" from="1719" to="1878">IPR009051</domain>
+              <domain confidence="1.7E-105" from="569" to="856">IPR006982</domain>
+              <domain confidence="23.554" from="60" to="462">IPR017932</domain>
+              <domain confidence="4.3E-98" from="1357" to="1629">IPR002489</domain>
+              <domain confidence="2.2E-18" from="1869" to="2182">IPR023753</domain>
+              <domain confidence="4.7E-58" from="1383" to="1563">IPR002489</domain>
+              <domain confidence="8.4E-177" from="970" to="1324">IPR013785</domain>
+            </domain_architecture>
+          </sequence>
+        </clade>
+    </clade>
+    <clade>
+      <branch_length>0.9303199999999999</branch_length>
+      <confidence type="bootstrap">100.0</confidence>
+      <clade>
+        <branch_length>0.08639</branch_length>
+        <confidence type="bootstrap">98.0</confidence>
+        <clade>
+          <branch_length>0.04749</branch_length>
+          <confidence type="bootstrap">96.0</confidence>
+          <clade>
+            <branch_length>0.1075</branch_length>
+            <confidence type="bootstrap">100.0</confidence>
+            <clade>
+              <branch_length>0.08295</branch_length>
+              <confidence type="bootstrap">100.0</confidence>
+              <clade>
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+                <branch_length>0.04665</branch_length>
+              <taxonomy>
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+                  <sequence>
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+                      <domain confidence="1.3E-161" from="898" to="1282">IPR002932</domain>
+                      <domain confidence="7.1E-94" from="1348" to="1602">IPR002489</domain>
+                      <domain confidence="20.821" from="98" to="497">IPR017932</domain>
+                      <domain confidence="1.1E-65" from="1363" to="1555">IPR002489</domain>
+                      <domain confidence="1.44E-86" from="1336" to="1594">IPR002489</domain>
+                      <domain confidence="3.7E-166" from="926" to="1305">IPR013785</domain>
+                      <domain confidence="9.1E-133" from="98" to="469">IPR000583</domain>
+                    </domain_architecture>
+                  </sequence>
+                </clade>
+              <clade>
+                <name>OS07G46460</name>
+                <branch_length>0.03368</branch_length>
+              <taxonomy>
+                    <code>osa</code>
+                  </taxonomy>
+                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/OS07G46460</property>
+                  <sequence>
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+                      <domain confidence="3.7E-167" from="924" to="1319">IPR013785</domain>
+                      <domain confidence="1.5E-93" from="1347" to="1601">IPR002489</domain>
+                      <domain confidence="1.5E-162" from="897" to="1281">IPR002932</domain>
+                      <domain confidence="2.2E-101" from="530" to="886">IPR013785</domain>
+                      <domain confidence="2.0E-64" from="1362" to="1554">IPR002489</domain>
+                      <domain confidence="20.22" from="97" to="496">IPR017932</domain>
+                      <domain confidence="2.2E-115" from="544" to="839">IPR006982</domain>
+                    </domain_architecture>
+                  </sequence>
+                </clade>
+            </clade>
+            <clade>
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+              <confidence type="bootstrap">97.0</confidence>
+              <clade>
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+                <confidence type="bootstrap">21.0</confidence>
+                <clade>
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+                  <confidence type="bootstrap">69.0</confidence>
+                  <clade>
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+                    <confidence type="bootstrap">99.0</confidence>
+                    <clade>
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+                      <confidence type="bootstrap">100.0</confidence>
+                      <clade>
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+                        <branch_length>0.00793</branch_length>
+                      <taxonomy>
+                            <code>cme</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CM00011G07020</property>
+                          <sequence>
+                            <domain_architecture length="1491">
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+                              <domain confidence="7.5E-65" from="1240" to="1430">IPR002489</domain>
+                              <domain confidence="17.12" from="1" to="373">IPR017932</domain>
+                              <domain confidence="8.4E-122" from="1" to="345">IPR000583</domain>
+                              <domain confidence="8.2E-163" from="774" to="1158">IPR002932</domain>
+                              <domain confidence="1.44E-89" from="1210" to="1471">IPR002489</domain>
+                              <domain confidence="2.0E-100" from="411" to="763">IPR013785</domain>
+                              <domain confidence="6.4E-167" from="800" to="1198">IPR013785</domain>
+                              <domain confidence="1.7E-93" from="1224" to="1476">IPR002489</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                      <clade>
+                        <name>CL10G14240</name>
+                        <branch_length>0.01156</branch_length>
+                      <taxonomy>
+                            <code>cla</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CL10G14240</property>
+                          <sequence>
+                            <domain_architecture length="1614">
+                              <domain confidence="3.1E-100" from="549" to="900">IPR013785</domain>
+                              <domain confidence="1.5E-166" from="937" to="1334">IPR013785</domain>
+                              <domain confidence="3.1E-135" from="111" to="482">IPR000583</domain>
+                              <domain confidence="5.2E-65" from="1376" to="1567">IPR002489</domain>
+                              <domain confidence="1.8E-114" from="558" to="853">IPR006982</domain>
+                              <domain confidence="8.6E-163" from="911" to="1295">IPR002932</domain>
+                              <domain confidence="3.0E-85" from="1360" to="1599">IPR002489</domain>
+                              <domain confidence="2.22E-83" from="1347" to="1594">IPR002489</domain>
+                              <domain confidence="20.259" from="111" to="510">IPR017932</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                    </clade>
+                    <clade>
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+                      <confidence type="bootstrap">93.0</confidence>
+                      <clade>
+                        <branch_length>0.00734</branch_length>
+                        <confidence type="bootstrap">92.0</confidence>
+                        <clade>
+                          <branch_length>0.03908</branch_length>
+                          <confidence type="bootstrap">100.0</confidence>
+                          <clade>
+                            <branch_length>0.0134</branch_length>
+                            <confidence type="bootstrap">99.0</confidence>
+                            <clade>
+                              <name>PPE_007G05330</name>
+                              <branch_length>0.01585</branch_length>
+                            <taxonomy>
+                                  <code>ppe</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PPE_007G05330</property>
+                                <sequence>
+                                  <domain_architecture length="1626">
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+                                    <domain confidence="6.3E-168" from="928" to="1322">IPR013785</domain>
+                                    <domain confidence="2.3E-133" from="108" to="479">IPR000583</domain>
+                                    <domain confidence="2.5E-116" from="555" to="850">IPR006982</domain>
+                                    <domain confidence="1.8E-92" from="1358" to="1614">IPR002489</domain>
+                                    <domain confidence="2.6E-99" from="549" to="897">IPR013785</domain>
+                                    <domain confidence="5.7E-162" from="908" to="1292">IPR002932</domain>
+                                    <domain confidence="19.658" from="108" to="507">IPR017932</domain>
+                                    <domain confidence="2.62E-87" from="1344" to="1605">IPR002489</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                            <clade>
+                              <name>MD00G230080</name>
+                              <branch_length>0.01737</branch_length>
+                            <taxonomy>
+                                  <code>mdo</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/MD00G230080</property>
+                                <sequence>
+                                  <domain_architecture length="1475">
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+                                    <domain confidence="4.7E-122" from="1" to="345">IPR000583</domain>
+                                    <domain confidence="1.2E-98" from="413" to="763">IPR013785</domain>
+                                    <domain confidence="1.2E-166" from="795" to="1187">IPR013785</domain>
+                                    <domain confidence="4.6E-62" from="1239" to="1430">IPR002489</domain>
+                                    <domain confidence="9.68E-86" from="1210" to="1471">IPR002489</domain>
+                                    <domain confidence="2.8E-116" from="421" to="716">IPR006982</domain>
+                                    <domain confidence="1.3E-162" from="774" to="1158">IPR002932</domain>
+                                    <domain confidence="1.8E-90" from="1223" to="1473">IPR002489</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                          </clade>
+                          <clade>
+                            <name>FV6G33050</name>
+                            <branch_length>0.04808</branch_length>
+                          <taxonomy>
+                                <code>fve</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/FV6G33050</property>
+                              <sequence>
+                                <domain_architecture length="2586">
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+                                  <domain confidence="1.1E-43" from="642" to="740">IPR027483</domain>
+                                  <domain confidence="1.8E-4" from="211" to="232">IPR003409</domain>
+                                  <domain confidence="1.1E-43" from="783" to="854">IPR027483</domain>
+                                  <domain confidence="1.6E-53" from="500" to="640">IPR027484</domain>
+                                  <domain confidence="2.4E-5" from="121" to="143">IPR003409</domain>
+                                  <domain confidence="3.8E-4" from="213" to="234">IPR003409</domain>
+                                  <domain confidence="5.8E-4" from="188" to="209">IPR003409</domain>
+                                  <domain confidence="2.7E-4" from="98" to="119">IPR003409</domain>
+                                  <domain confidence="8.5E-87" from="2318" to="2566">IPR002489</domain>
+                                  <domain confidence="5.4E-4" from="144" to="165">IPR003409</domain>
+                                  <domain confidence="0.033" from="96" to="117">IPR003409</domain>
+                                  <domain confidence="2.8E-4" from="165" to="186">IPR003409</domain>
+                                  <domain confidence="18.069" from="992" to="1389">IPR017932</domain>
+                                  <domain confidence="2.1E-162" from="1849" to="2233">IPR002932</domain>
+                                  <domain confidence="1.6E-4" from="75" to="97">IPR003409</domain>
+                                  <domain confidence="1.6E-174" from="496" to="857">IPR016034</domain>
+                                  <domain confidence="6.3E-92" from="2319" to="2578">IPR002489</domain>
+                                  <domain confidence="2.9E-4" from="142" to="163">IPR003409</domain>
+                                  <domain confidence="9.0E-5" from="190" to="212">IPR003409</domain>
+                                  <domain confidence="8.0E-134" from="992" to="1363">IPR000583</domain>
+                                  <domain confidence="9.3E-167" from="1870" to="2260">IPR013785</domain>
+                                  <domain confidence="2.3E-100" from="1488" to="1838">IPR013785</domain>
+                                  <domain confidence="1.4E-6" from="167" to="188">IPR003409</domain>
+                                  <domain confidence="1.1E-63" from="2334" to="2525">IPR002489</domain>
+                                  <domain confidence="65.115" from="465" to="856">IPR002498</domain>
+                                  <domain confidence="0.0015" from="73" to="94">IPR003409</domain>
+                                  <domain confidence="6.0E-4" from="119" to="140">IPR003409</domain>
+                                  <domain confidence="1.1E-82" from="553" to="853">IPR002498</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                        </clade>
+                        <clade>
+                          <branch_length>0.00687</branch_length>
+                          <confidence type="bootstrap">88.0</confidence>
+                          <clade>
+                            <branch_length>0.00335</branch_length>
+                            <confidence type="bootstrap">14.0</confidence>
+                            <clade>
+                              <branch_length>0.00852</branch_length>
+                              <confidence type="bootstrap">30.0</confidence>
+                              <clade>
+                                <name>VV08G10190</name>
+                                <branch_length>0.0541</branch_length>
+                              <taxonomy>
+                                    <code>vvi</code>
+                                  </taxonomy>
+                                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/VV08G10190</property>
+                                  <sequence>
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+                                      <domain confidence="1.6E-132" from="140" to="511">IPR000583</domain>
+                                      <domain confidence="1.7E-93" from="1391" to="1648">IPR002489</domain>
+                                      <domain confidence="6.4E-114" from="587" to="882">IPR006982</domain>
+                                      <domain confidence="1.9E-161" from="940" to="1324">IPR002932</domain>
+                                      <domain confidence="4.7E-100" from="579" to="929">IPR013785</domain>
+                                      <domain confidence="4.7E-168" from="960" to="1357">IPR013785</domain>
+                                      <domain confidence="1.1E-62" from="1405" to="1596">IPR002489</domain>
+                                      <domain confidence="20.279" from="140" to="539">IPR017932</domain>
+                                    </domain_architecture>
+                                  </sequence>
+                                </clade>
+                              <clade>
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+                                <branch_length>0.07873</branch_length>
+                              <taxonomy>
+                                    <code>egr</code>
+                                  </taxonomy>
+                                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/EG0001G18800</property>
+                                  <sequence>
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+                                      <domain confidence="3.0E-115" from="549" to="844">IPR006982</domain>
+                                      <domain confidence="2.8E-62" from="1367" to="1558">IPR002489</domain>
+                                      <domain confidence="1.1E-160" from="902" to="1286">IPR002932</domain>
+                                      <domain confidence="3.2E-101" from="534" to="891">IPR013785</domain>
+                                      <domain confidence="12.488" from="125" to="501">IPR017932</domain>
+                                      <domain confidence="4.8E-118" from="125" to="468">IPR000583</domain>
+                                      <domain confidence="2.4E-168" from="913" to="1319">IPR013785</domain>
+                                      <domain confidence="6.02E-86" from="1342" to="1599">IPR002489</domain>
+                                    </domain_architecture>
+                                  </sequence>
+                                </clade>
+                            </clade>
+                            <clade>
+                              <name>CP00005G01670</name>
+                              <branch_length>0.0791</branch_length>
+                            <taxonomy>
+                                  <code>cpa</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CP00005G01670</property>
+                                <sequence>
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+                                    <domain confidence="2.6E-167" from="870" to="1258">IPR013785</domain>
+                                    <domain confidence="3.2E-92" from="1299" to="1555">IPR002489</domain>
+                                    <domain confidence="4.2E-82" from="553" to="791">IPR006982</domain>
+                                    <domain confidence="20.298" from="104" to="503">IPR017932</domain>
+                                    <domain confidence="9.0E-74" from="552" to="838">IPR013785</domain>
+                                    <domain confidence="2.8E-63" from="1314" to="1505">IPR002489</domain>
+                                    <domain confidence="8.2E-163" from="849" to="1233">IPR002932</domain>
+                                    <domain confidence="3.5E-133" from="104" to="475">IPR000583</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                          </clade>
+                          <clade>
+                            <branch_length>0.00173</branch_length>
+                            <confidence type="bootstrap">55.0</confidence>
+                            <clade>
+                              <branch_length>0.0096</branch_length>
+                              <confidence type="bootstrap">95.0</confidence>
+                              <clade>
+                                <branch_length>0.02108</branch_length>
+                                <confidence type="bootstrap">100.0</confidence>
+                                <clade>
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+                                  <branch_length>0.0295</branch_length>
+                                <taxonomy>
+                                      <code>tca</code>
+                                    </taxonomy>
+                                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/TC0005G13670</property>
+                                    <sequence>
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+                                        <domain confidence="3.8E-62" from="1373" to="1560">IPR002489</domain>
+                                        <domain confidence="2.9E-133" from="108" to="479">IPR000583</domain>
+                                        <domain confidence="1.0E-114" from="555" to="850">IPR006982</domain>
+                                        <domain confidence="1.1E-168" from="933" to="1328">IPR013785</domain>
+                                        <domain confidence="1.3E-99" from="546" to="897">IPR013785</domain>
+                                        <domain confidence="19.91" from="108" to="507">IPR017932</domain>
+                                        <domain confidence="8.0E-163" from="908" to="1292">IPR002932</domain>
+                                        <domain confidence="1.83E-87" from="1344" to="1605">IPR002489</domain>
+                                      </domain_architecture>
+                                    </sequence>
+                                  </clade>
+                                <clade>
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+                                  <branch_length>0.0439</branch_length>
+                                <taxonomy>
+                                      <code>gra</code>
+                                    </taxonomy>
+                                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GR02G22660</property>
+                                    <sequence>
+                                      <domain_architecture length="1690">
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+                                        <domain confidence="5.89E-88" from="1409" to="1670">IPR002489</domain>
+                                        <domain confidence="2.1E-162" from="973" to="1357">IPR002932</domain>
+                                        <domain confidence="2.1E-168" from="993" to="1386">IPR013785</domain>
+                                        <domain confidence="1.3E-93" from="1423" to="1680">IPR002489</domain>
+                                        <domain confidence="4.1E-99" from="612" to="962">IPR013785</domain>
+                                        <domain confidence="4.7E-132" from="173" to="544">IPR000583</domain>
+                                        <domain confidence="3.7E-63" from="1438" to="1629">IPR002489</domain>
+                                        <domain confidence="18.767" from="173" to="572">IPR017932</domain>
+                                      </domain_architecture>
+                                    </sequence>
+                                  </clade>
+                              </clade>
+                              <clade>
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+                                <branch_length>0.05842</branch_length>
+                              <taxonomy>
+                                    <code>csi</code>
+                                  </taxonomy>
+                                  <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CS00537G00010</property>
+                                  <sequence>
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+                                      <domain confidence="2.7E-131" from="104" to="475">IPR000583</domain>
+                                      <domain confidence="1.3E-141" from="904" to="1271">IPR002932</domain>
+                                      <domain confidence="4.71E-48" from="1324" to="1482">IPR002489</domain>
+                                      <domain confidence="8.7E-115" from="551" to="846">IPR006982</domain>
+                                      <domain confidence="8.8E-99" from="542" to="893">IPR013785</domain>
+                                      <domain confidence="20.453" from="104" to="503">IPR017932</domain>
+                                      <domain confidence="5.9E-50" from="1336" to="1482">IPR002489</domain>
+                                      <domain confidence="1.6E-148" from="921" to="1304">IPR013785</domain>
+                                    </domain_architecture>
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+                                </clade>
+                            </clade>
+                            <clade>
+                              <branch_length>0.01558</branch_length>
+                              <confidence type="bootstrap">99.0</confidence>
+                              <clade>
+                                <branch_length>0.02832</branch_length>
+                                <confidence type="bootstrap">100.0</confidence>
+                                <clade>
+                                  <name>PT16G03690</name>
+                                  <branch_length>0.02457</branch_length>
+                                <taxonomy>
+                                      <code>ptr</code>
+                                    </taxonomy>
+                                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PT16G03690</property>
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+                                        <domain confidence="1.9E-114" from="551" to="845">IPR006982</domain>
+                                        <domain confidence="8.0E-134" from="103" to="474">IPR000583</domain>
+                                        <domain confidence="2.2E-162" from="903" to="1287">IPR002932</domain>
+                                        <domain confidence="19.697" from="103" to="502">IPR017932</domain>
+                                        <domain confidence="4.0E-168" from="919" to="1320">IPR013785</domain>
+                                        <domain confidence="1.5E-98" from="541" to="892">IPR013785</domain>
+                                        <domain confidence="5.5E-64" from="1368" to="1559">IPR002489</domain>
+                                        <domain confidence="2.22E-87" from="1343" to="1600">IPR002489</domain>
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+                                    </sequence>
+                                  </clade>
+                                <clade>
+                                  <name>PT06G03840</name>
+                                  <branch_length>0.02464</branch_length>
+                                <taxonomy>
+                                      <code>ptr</code>
+                                    </taxonomy>
+                                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PT06G03840</property>
+                                    <sequence>
+                                      <domain_architecture length="1492">
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+                                        <domain confidence="3.3E-93" from="1224" to="1480">IPR002489</domain>
+                                        <domain confidence="1.0E-99" from="410" to="763">IPR013785</domain>
+                                        <domain confidence="1.3E-63" from="1239" to="1430">IPR002489</domain>
+                                        <domain confidence="3.7E-168" from="790" to="1190">IPR013785</domain>
+                                        <domain confidence="7.5E-162" from="774" to="1158">IPR002932</domain>
+                                        <domain confidence="1.96E-87" from="1212" to="1471">IPR002489</domain>
+                                        <domain confidence="16.364" from="1" to="373">IPR017932</domain>
+                                        <domain confidence="1.0E-122" from="1" to="345">IPR000583</domain>
+                                      </domain_architecture>
+                                    </sequence>
+                                  </clade>
+                              </clade>
+                              <clade>
+                                <branch_length>0.015</branch_length>
+                                <confidence type="bootstrap">99.0</confidence>
+                                <clade>
+                                  <name>ME08100G00050</name>
+                                  <branch_length>0.03509</branch_length>
+                                <taxonomy>
+                                      <code>mes</code>
+                                    </taxonomy>
+                                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ME08100G00050</property>
+                                    <sequence>
+                                      <domain_architecture length="1491">
+                                        <domain confidence="1.9E-114" from="421" to="716">IPR006982</domain>
+                                        <domain confidence="1.1E-162" from="774" to="1158">IPR002932</domain>
+                                        <domain confidence="8.3E-93" from="1224" to="1480">IPR002489</domain>
+                                        <domain confidence="3.8E-101" from="408" to="763">IPR013785</domain>
+                                        <domain confidence="2.3E-166" from="799" to="1194">IPR013785</domain>
+                                        <domain confidence="1.0E-122" from="1" to="345">IPR000583</domain>
+                                        <domain confidence="2.5E-63" from="1239" to="1430">IPR002489</domain>
+                                        <domain confidence="1.57E-88" from="1209" to="1471">IPR002489</domain>
+                                        <domain confidence="17.275" from="1" to="373">IPR017932</domain>
+                                      </domain_architecture>
+                                    </sequence>
+                                  </clade>
+                                <clade>
+                                  <name>RC29612G00060</name>
+                                  <branch_length>0.04136</branch_length>
+                                <taxonomy>
+                                      <code>rco</code>
+                                    </taxonomy>
+                                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/RC29612G00060</property>
+                                    <sequence>
+                                      <domain_architecture length="1633">
+                                        <domain confidence="4.5E-168" from="937" to="1334">IPR013785</domain>
+                                        <domain confidence="8.6E-103" from="551" to="906">IPR013785</domain>
+                                        <domain confidence="5.62E-88" from="1353" to="1614">IPR002489</domain>
+                                        <domain confidence="4.7E-116" from="564" to="859">IPR006982</domain>
+                                        <domain confidence="1.2E-92" from="1367" to="1622">IPR002489</domain>
+                                        <domain confidence="20.065" from="117" to="516">IPR017932</domain>
+                                        <domain confidence="6.3E-162" from="917" to="1301">IPR002932</domain>
+                                        <domain confidence="2.2E-135" from="117" to="488">IPR000583</domain>
+                                        <domain confidence="4.3E-63" from="1382" to="1573">IPR002489</domain>
+                                      </domain_architecture>
+                                    </sequence>
+                                  </clade>
+                              </clade>
+                            </clade>
+                          </clade>
+                        </clade>
+                      </clade>
+                      <clade>
+                        <branch_length>0.00713</branch_length>
+                        <confidence type="bootstrap">78.0</confidence>
+                        <clade>
+                          <branch_length>0.01216</branch_length>
+                          <confidence type="bootstrap">80.0</confidence>
+                          <clade>
+                            <branch_length>0.0772</branch_length>
+                            <confidence type="bootstrap">100.0</confidence>
+                            <clade>
+                              <name>SL03G063560</name>
+                              <branch_length>0.00595</branch_length>
+                            <taxonomy>
+                                  <code>sly</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/SL03G063560</property>
+                                <sequence>
+                                  <domain_architecture length="1622">
+                                    <domain confidence="2.5E-114" from="546" to="841">IPR006982</domain>
+                                    <domain confidence="19.717" from="99" to="498">IPR017932</domain>
+                                    <domain confidence="1.12E-88" from="1334" to="1596">IPR002489</domain>
+                                    <domain confidence="8.9E-95" from="1349" to="1604">IPR002489</domain>
+                                    <domain confidence="5.0E-135" from="99" to="470">IPR000583</domain>
+                                    <domain confidence="4.1E-163" from="899" to="1283">IPR002932</domain>
+                                    <domain confidence="3.1E-169" from="924" to="1316">IPR013785</domain>
+                                    <domain confidence="8.0E-65" from="1364" to="1556">IPR002489</domain>
+                                    <domain confidence="8.0E-102" from="536" to="889">IPR013785</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                            <clade>
+                              <name>ST03G019370</name>
+                              <branch_length>0.0061</branch_length>
+                            <taxonomy>
+                                  <code>stu</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ST03G019370</property>
+                                <sequence>
+                                  <domain_architecture length="1622">
+                                    <domain confidence="8.0E-65" from="1364" to="1556">IPR002489</domain>
+                                    <domain confidence="19.639" from="99" to="498">IPR017932</domain>
+                                    <domain confidence="1.12E-88" from="1334" to="1596">IPR002489</domain>
+                                    <domain confidence="4.5E-169" from="924" to="1316">IPR013785</domain>
+                                    <domain confidence="2.9E-163" from="899" to="1283">IPR002932</domain>
+                                    <domain confidence="3.4E-100" from="537" to="889">IPR013785</domain>
+                                    <domain confidence="8.9E-95" from="1349" to="1604">IPR002489</domain>
+                                    <domain confidence="1.1E-114" from="546" to="841">IPR006982</domain>
+                                    <domain confidence="6.3E-135" from="99" to="470">IPR000583</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                          </clade>
+                          <clade>
+                            <name>ATR_00063G00700</name>
+                            <branch_length>0.10731</branch_length>
+                          <taxonomy>
+                                <code>atr</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/ATR_00063G00700</property>
+                              <sequence>
+                                <domain_architecture length="1631">
+                                  <domain confidence="1.4E-161" from="914" to="1298">IPR002932</domain>
+                                  <domain confidence="3.0E-167" from="934" to="1331">IPR013785</domain>
+                                  <domain confidence="6.3E-112" from="561" to="856">IPR006982</domain>
+                                  <domain confidence="8.1E-99" from="553" to="903">IPR013785</domain>
+                                  <domain confidence="1.5E-92" from="1364" to="1618">IPR002489</domain>
+                                  <domain confidence="9.0E-133" from="114" to="485">IPR000583</domain>
+                                  <domain confidence="3.27E-87" from="1350" to="1611">IPR002489</domain>
+                                  <domain confidence="8.9E-65" from="1379" to="1571">IPR002489</domain>
+                                  <domain confidence="20.24" from="114" to="513">IPR017932</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                        </clade>
+                        <clade>
+                          <branch_length>0.04502</branch_length>
+                          <confidence type="bootstrap">100.0</confidence>
+                          <clade>
+                            <branch_length>0.0206</branch_length>
+                            <confidence type="bootstrap">100.0</confidence>
+                            <clade>
+                              <name>GM03G28410</name>
+                              <branch_length>0.00733</branch_length>
+                            <taxonomy>
+                                  <code>gma</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GM03G28410</property>
+                                <sequence>
+                                  <domain_architecture length="1627">
+                                    <domain confidence="5.0E-135" from="105" to="476">IPR000583</domain>
+                                    <domain confidence="20.724" from="105" to="504">IPR017932</domain>
+                                    <domain confidence="1.7E-102" from="544" to="894">IPR013785</domain>
+                                    <domain confidence="1.0E-114" from="552" to="847">IPR006982</domain>
+                                    <domain confidence="1.12E-88" from="1339" to="1602">IPR002489</domain>
+                                    <domain confidence="1.8E-64" from="1370" to="1561">IPR002489</domain>
+                                    <domain confidence="4.3E-94" from="1355" to="1614">IPR002489</domain>
+                                    <domain confidence="8.2E-168" from="921" to="1327">IPR013785</domain>
+                                    <domain confidence="1.1E-162" from="905" to="1289">IPR002932</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                            <clade>
+                              <name>GM19G31120</name>
+                              <branch_length>0.01655</branch_length>
+                            <taxonomy>
+                                  <code>gma</code>
+                                </taxonomy>
+                                <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/GM19G31120</property>
+                                <sequence>
+                                  <domain_architecture length="1582">
+                                    <domain confidence="1.6E-167" from="923" to="1327">IPR013785</domain>
+                                    <domain confidence="7.9E-63" from="1372" to="1563">IPR002489</domain>
+                                    <domain confidence="20.608" from="107" to="506">IPR017932</domain>
+                                    <domain confidence="1.2E-162" from="907" to="1291">IPR002932</domain>
+                                    <domain confidence="1.1E-134" from="107" to="478">IPR000583</domain>
+                                    <domain confidence="8.11E-78" from="1341" to="1578">IPR002489</domain>
+                                    <domain confidence="1.0E-80" from="1357" to="1577">IPR002489</domain>
+                                    <domain confidence="5.3E-116" from="554" to="849">IPR006982</domain>
+                                    <domain confidence="3.7E-103" from="547" to="896">IPR013785</domain>
+                                  </domain_architecture>
+                                </sequence>
+                              </clade>
+                          </clade>
+                          <clade>
+                            <name>MT7G089970</name>
+                            <branch_length>0.04336</branch_length>
+                          <taxonomy>
+                                <code>mtr</code>
+                              </taxonomy>
+                              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/MT7G089970</property>
+                              <sequence>
+                                <domain_architecture length="1613">
+                                  <domain confidence="3.4E-161" from="896" to="1280">IPR002932</domain>
+                                  <domain confidence="8.0E-62" from="1361" to="1553">IPR002489</domain>
+                                  <domain confidence="9.94E-88" from="1330" to="1593">IPR002489</domain>
+                                  <domain confidence="7.2E-168" from="912" to="1313">IPR013785</domain>
+                                  <domain confidence="2.3E-115" from="543" to="838">IPR006982</domain>
+                                  <domain confidence="1.1E-133" from="96" to="467">IPR000583</domain>
+                                  <domain confidence="9.2E-93" from="1346" to="1599">IPR002489</domain>
+                                  <domain confidence="20.53" from="96" to="495">IPR017932</domain>
+                                  <domain confidence="3.6E-102" from="530" to="885">IPR013785</domain>
+                                </domain_architecture>
+                              </sequence>
+                            </clade>
+                        </clade>
+                      </clade>
+                    </clade>
+                  </clade>
+                  <clade>
+                    <branch_length>0.11417</branch_length>
+                    <confidence type="bootstrap">100.0</confidence>
+                    <clade>
+                      <branch_length>0.0133</branch_length>
+                      <confidence type="bootstrap">97.0</confidence>
+                      <clade>
+                        <branch_length>0.00236</branch_length>
+                        <confidence type="bootstrap">90.0</confidence>
+                        <clade>
+                          <name>AT2G41220</name>
+                          <branch_length>0.00955</branch_length>
+                        <taxonomy>
+                              <code>ath</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/AT2G41220</property>
+                            <sequence>
+                              <domain_architecture length="1630">
+                                <domain confidence="20.472" from="108" to="507">IPR017932</domain>
+                                <domain confidence="6.3E-100" from="545" to="897">IPR013785</domain>
+                                <domain confidence="1.8E-167" from="935" to="1329">IPR013785</domain>
+                                <domain confidence="1.8E-93" from="1357" to="1608">IPR002489</domain>
+                                <domain confidence="5.5E-114" from="555" to="850">IPR006982</domain>
+                                <domain confidence="8.3E-63" from="1371" to="1564">IPR002489</domain>
+                                <domain confidence="1.5E-161" from="908" to="1292">IPR002932</domain>
+                                <domain confidence="4.5E-135" from="108" to="479">IPR000583</domain>
+                                <domain confidence="1.57E-88" from="1342" to="1604">IPR002489</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                        <clade>
+                          <name>AL4G28170</name>
+                          <branch_length>0.00563</branch_length>
+                        <taxonomy>
+                              <code>aly</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/AL4G28170</property>
+                            <sequence>
+                              <domain_architecture length="1630">
+                                <domain confidence="1.05E-88" from="1342" to="1604">IPR002489</domain>
+                                <domain confidence="1.2E-161" from="908" to="1292">IPR002932</domain>
+                                <domain confidence="3.6E-115" from="555" to="850">IPR006982</domain>
+                                <domain confidence="1.2E-93" from="1357" to="1608">IPR002489</domain>
+                                <domain confidence="20.55" from="108" to="507">IPR017932</domain>
+                                <domain confidence="1.2E-135" from="108" to="479">IPR000583</domain>
+                                <domain confidence="4.8E-63" from="1371" to="1564">IPR002489</domain>
+                                <domain confidence="1.5E-167" from="935" to="1329">IPR013785</domain>
+                                <domain confidence="6.9E-101" from="545" to="897">IPR013785</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                      </clade>
+                      <clade>
+                        <name>CRU_004G22730</name>
+                        <branch_length>0.01323</branch_length>
+                      <taxonomy>
+                            <code>cru</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CRU_004G22730</property>
+                          <sequence>
+                            <domain_architecture length="1630">
+                              <domain confidence="9.3E-162" from="908" to="1292">IPR002932</domain>
+                              <domain confidence="1.3E-116" from="556" to="850">IPR006982</domain>
+                              <domain confidence="3.4E-102" from="545" to="897">IPR013785</domain>
+                              <domain confidence="1.11E-87" from="1342" to="1604">IPR002489</domain>
+                              <domain confidence="1.8E-135" from="108" to="479">IPR000583</domain>
+                              <domain confidence="5.0E-64" from="1372" to="1564">IPR002489</domain>
+                              <domain confidence="5.8E-92" from="1357" to="1608">IPR002489</domain>
+                              <domain confidence="8.2E-168" from="935" to="1329">IPR013785</domain>
+                              <domain confidence="20.666" from="108" to="507">IPR017932</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                    </clade>
+                    <clade>
+                      <branch_length>0.00815</branch_length>
+                      <confidence type="bootstrap">85.0</confidence>
+                      <clade>
+                        <branch_length>0.00334</branch_length>
+                        <confidence type="bootstrap">84.0</confidence>
+                        <clade>
+                          <name>BR03G20680</name>
+                          <branch_length>0.01831</branch_length>
+                        <taxonomy>
+                              <code>bra</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/BR03G20680</property>
+                            <sequence>
+                              <domain_architecture length="1587">
+                                <domain confidence="8.89E-89" from="1300" to="1562">IPR002489</domain>
+                                <domain confidence="2.7E-167" from="893" to="1287">IPR013785</domain>
+                                <domain confidence="8.6E-113" from="96" to="464">IPR000583</domain>
+                                <domain confidence="2.8E-161" from="866" to="1250">IPR002932</domain>
+                                <domain confidence="1.8E-93" from="555" to="808">IPR006982</domain>
+                                <domain confidence="5.0E-63" from="1329" to="1522">IPR002489</domain>
+                                <domain confidence="2.6E-87" from="528" to="855">IPR013785</domain>
+                                <domain confidence="19.717" from="96" to="492">IPR017932</domain>
+                                <domain confidence="2.1E-93" from="1315" to="1569">IPR002489</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                        <clade>
+                          <name>BR04G24660</name>
+                          <branch_length>0.01718</branch_length>
+                        <taxonomy>
+                              <code>bra</code>
+                            </taxonomy>
+                            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/BR04G24660</property>
+                            <sequence>
+                              <domain_architecture length="1627">
+                                <domain confidence="9.55E-89" from="1340" to="1602">IPR002489</domain>
+                                <domain confidence="9.8E-135" from="106" to="477">IPR000583</domain>
+                                <domain confidence="3.0E-168" from="933" to="1327">IPR013785</domain>
+                                <domain confidence="1.3E-62" from="1369" to="1559">IPR002489</domain>
+                                <domain confidence="1.3E-102" from="543" to="895">IPR013785</domain>
+                                <domain confidence="1.1E-92" from="1355" to="1607">IPR002489</domain>
+                                <domain confidence="20.453" from="106" to="505">IPR017932</domain>
+                                <domain confidence="9.1E-162" from="906" to="1290">IPR002932</domain>
+                                <domain confidence="1.3E-115" from="553" to="848">IPR006982</domain>
+                              </domain_architecture>
+                            </sequence>
+                          </clade>
+                      </clade>
+                      <clade>
+                        <name>TP4G23520</name>
+                        <branch_length>0.01211</branch_length>
+                      <taxonomy>
+                            <code>tpa</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/TP4G23520</property>
+                          <sequence>
+                            <domain_architecture length="1630">
+                              <domain confidence="1.6E-161" from="908" to="1292">IPR002932</domain>
+                              <domain confidence="7.2E-63" from="1371" to="1564">IPR002489</domain>
+                              <domain confidence="4.6E-102" from="545" to="897">IPR013785</domain>
+                              <domain confidence="3.4E-115" from="555" to="850">IPR006982</domain>
+                              <domain confidence="20.453" from="108" to="507">IPR017932</domain>
+                              <domain confidence="3.0E-93" from="1357" to="1609">IPR002489</domain>
+                              <domain confidence="3.8E-135" from="108" to="479">IPR000583</domain>
+                              <domain confidence="1.2E-167" from="935" to="1329">IPR013785</domain>
+                              <domain confidence="1.44E-88" from="1342" to="1604">IPR002489</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                    </clade>
+                  </clade>
+                </clade>
+                <clade>
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+                  <branch_length>0.08576</branch_length>
+                <taxonomy>
+                      <code>bvu</code>
+                    </taxonomy>
+                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/BV3G12750</property>
+                    <sequence>
+                      <domain_architecture length="1616">
+                        <domain confidence="3.4E-90" from="1335" to="1596">IPR002489</domain>
+                        <domain confidence="1.2E-94" from="1350" to="1609">IPR002489</domain>
+                        <domain confidence="1.3E-167" from="926" to="1315">IPR013785</domain>
+                        <domain confidence="5.5E-163" from="899" to="1283">IPR002932</domain>
+                        <domain confidence="3.1E-133" from="99" to="470">IPR000583</domain>
+                        <domain confidence="2.7E-116" from="546" to="841">IPR006982</domain>
+                        <domain confidence="19.755" from="99" to="498">IPR017932</domain>
+                        <domain confidence="3.0E-64" from="1364" to="1555">IPR002489</domain>
+                        <domain confidence="4.4E-100" from="539" to="888">IPR013785</domain>
+                      </domain_architecture>
+                    </sequence>
+                  </clade>
+              </clade>
+              <clade>
+                <branch_length>0.09245</branch_length>
+                <confidence type="bootstrap">100.0</confidence>
+                <clade>
+                  <branch_length>0.00885</branch_length>
+                  <confidence type="bootstrap">58.0</confidence>
+                  <clade>
+                    <branch_length>0.01132</branch_length>
+                    <confidence type="bootstrap">99.0</confidence>
+                    <clade>
+                      <branch_length>0.00272</branch_length>
+                      <confidence type="bootstrap">83.0</confidence>
+                      <clade>
+                        <name>AL6G03480</name>
+                        <branch_length>0.01513</branch_length>
+                      <taxonomy>
+                            <code>aly</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/AL6G03480</property>
+                          <sequence>
+                            <domain_architecture length="1607">
+                              <domain confidence="8.0E-63" from="1355" to="1547">IPR002489</domain>
+                              <domain confidence="7.1E-51" from="540" to="741">IPR013785</domain>
+                              <domain confidence="7.59E-87" from="1328" to="1587">IPR002489</domain>
+                              <domain confidence="4.5E-27" from="755" to="879">IPR013785</domain>
+                              <domain confidence="4.2E-92" from="1342" to="1592">IPR002489</domain>
+                              <domain confidence="19.852" from="105" to="504">IPR017932</domain>
+                              <domain confidence="4.9E-167" from="916" to="1308">IPR013785</domain>
+                              <domain confidence="1.8E-134" from="105" to="476">IPR000583</domain>
+                              <domain confidence="5.7E-92" from="553" to="832">IPR006982</domain>
+                              <domain confidence="7.0E-164" from="890" to="1274">IPR002932</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                      <clade>
+                        <name>AT5G04140</name>
+                        <branch_length>0.01881</branch_length>
+                      <taxonomy>
+                            <code>ath</code>
+                          </taxonomy>
+                          <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/AT5G04140</property>
+                          <sequence>
+                            <domain_architecture length="1649">
+                              <domain confidence="3.1E-62" from="1397" to="1589">IPR002489</domain>
+                              <domain confidence="1.0E-163" from="932" to="1317">IPR002932</domain>
+                              <domain confidence="3.7E-115" from="580" to="874">IPR006982</domain>
+                              <domain confidence="2.1E-92" from="1384" to="1634">IPR002489</domain>
+                              <domain confidence="1.6E-166" from="958" to="1350">IPR013785</domain>
+                              <domain confidence="9.4E-134" from="132" to="503">IPR000583</domain>
+                              <domain confidence="1.2E-99" from="567" to="921">IPR013785</domain>
+                              <domain confidence="3.79E-87" from="1370" to="1629">IPR002489</domain>
+                              <domain confidence="19.91" from="132" to="531">IPR017932</domain>
+                            </domain_architecture>
+                          </sequence>
+                        </clade>
+                    </clade>
+                    <clade>
+                      <name>CRU_006G03010</name>
+                      <branch_length>0.01351</branch_length>
+                    <taxonomy>
+                          <code>cru</code>
+                        </taxonomy>
+                        <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CRU_006G03010</property>
+                        <sequence>
+                          <domain_architecture length="1722">
+                            <domain confidence="1.8E-167" from="1031" to="1416">IPR013785</domain>
+                            <domain confidence="1.3E-62" from="1470" to="1662">IPR002489</domain>
+                            <domain confidence="5.6E-135" from="205" to="576">IPR000583</domain>
+                            <domain confidence="2.5E-116" from="653" to="947">IPR006982</domain>
+                            <domain confidence="2.4E-164" from="1005" to="1390">IPR002932</domain>
+                            <domain confidence="9.02E-87" from="1443" to="1702">IPR002489</domain>
+                            <domain confidence="19.329" from="205" to="604">IPR017932</domain>
+                            <domain confidence="2.6E-92" from="1457" to="1707">IPR002489</domain>
+                            <domain confidence="4.7E-101" from="640" to="994">IPR013785</domain>
+                          </domain_architecture>
+                        </sequence>
+                      </clade>
+                  </clade>
+                  <clade>
+                    <name>TP6G38610</name>
+                    <branch_length>0.01709</branch_length>
+                  <taxonomy>
+                        <code>tpa</code>
+                      </taxonomy>
+                      <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/TP6G38610</property>
+                      <sequence>
+                        <domain_architecture length="1624">
+                          <domain confidence="5.7E-62" from="1372" to="1563">IPR002489</domain>
+                          <domain confidence="19.697" from="107" to="506">IPR017932</domain>
+                          <domain confidence="4.5E-99" from="542" to="896">IPR013785</domain>
+                          <domain confidence="1.7E-113" from="555" to="849">IPR006982</domain>
+                          <domain confidence="8.6E-164" from="907" to="1292">IPR002932</domain>
+                          <domain confidence="1.44E-87" from="1343" to="1604">IPR002489</domain>
+                          <domain confidence="9.1E-135" from="107" to="478">IPR000583</domain>
+                          <domain confidence="2.8E-93" from="1358" to="1609">IPR002489</domain>
+                          <domain confidence="1.3E-166" from="933" to="1323">IPR013785</domain>
+                        </domain_architecture>
+                      </sequence>
+                    </clade>
+                </clade>
+                <clade>
+                  <name>BR10G27480</name>
+                  <branch_length>0.01108</branch_length>
+                <taxonomy>
+                      <code>bra</code>
+                    </taxonomy>
+                    <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/BR10G27480</property>
+                    <sequence>
+                      <domain_architecture length="1621">
+                        <domain confidence="9.3E-100" from="539" to="893">IPR013785</domain>
+                        <domain confidence="5.7E-135" from="104" to="475">IPR000583</domain>
+                        <domain confidence="6.7E-167" from="930" to="1318">IPR013785</domain>
+                        <domain confidence="3.1E-93" from="1354" to="1606">IPR002489</domain>
+                        <domain confidence="1.4E-61" from="1369" to="1561">IPR002489</domain>
+                        <domain confidence="9.7E-164" from="904" to="1288">IPR002932</domain>
+                        <domain confidence="5.6E-114" from="552" to="846">IPR006982</domain>
+                        <domain confidence="1.57E-86" from="1341" to="1601">IPR002489</domain>
+                        <domain confidence="19.31" from="104" to="503">IPR017932</domain>
+                      </domain_architecture>
+                    </sequence>
+                  </clade>
+              </clade>
+            </clade>
+          </clade>
+          <clade>
+            <name>PP00042G01290</name>
+            <branch_length>0.19366</branch_length>
+          <taxonomy>
+                <code>ppa</code>
+              </taxonomy>
+              <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PP00042G01290</property>
+              <sequence>
+                <domain_architecture length="1634">
+                  <domain confidence="2.7E-136" from="117" to="488">IPR000583</domain>
+                  <domain confidence="20.317" from="117" to="516">IPR017932</domain>
+                  <domain confidence="8.9E-114" from="564" to="859">IPR006982</domain>
+                  <domain confidence="5.49E-85" from="1353" to="1612">IPR002489</domain>
+                  <domain confidence="1.8E-97" from="554" to="906">IPR013785</domain>
+                  <domain confidence="4.4E-164" from="947" to="1335">IPR013785</domain>
+                  <domain confidence="3.7E-159" from="917" to="1301">IPR002932</domain>
+                  <domain confidence="4.9E-59" from="1382" to="1572">IPR002489</domain>
+                  <domain confidence="5.1E-90" from="1367" to="1620">IPR002489</domain>
+                </domain_architecture>
+              </sequence>
+            </clade>
+        </clade>
+        <clade>
+          <name>PP00212G00220</name>
+          <branch_length>0.12216</branch_length>
+        <taxonomy>
+              <code>ppa</code>
+            </taxonomy>
+            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/PP00212G00220</property>
+            <sequence>
+              <domain_architecture length="1627">
+                <domain confidence="2.7E-93" from="1361" to="1617">IPR002489</domain>
+                <domain confidence="4.9E-158" from="910" to="1294">IPR002932</domain>
+                <domain confidence="1.6E-115" from="557" to="852">IPR006982</domain>
+                <domain confidence="6.5E-162" from="937" to="1340">IPR013785</domain>
+                <domain confidence="3.14E-87" from="1348" to="1607">IPR002489</domain>
+                <domain confidence="21.325" from="110" to="509">IPR017932</domain>
+                <domain confidence="7.3E-63" from="1375" to="1567">IPR002489</domain>
+                <domain confidence="1.3E-133" from="110" to="481">IPR000583</domain>
+                <domain confidence="1.1E-100" from="543" to="900">IPR013785</domain>
+              </domain_architecture>
+            </sequence>
+          </clade>
+      </clade>
+      <clade>
+        <branch_length>0.11596</branch_length>
+        <confidence type="bootstrap">100.0</confidence>
+        <clade>
+          <name>OL20G02060</name>
+          <branch_length>0.34122</branch_length>
+        <taxonomy>
+              <code>olu</code>
+            </taxonomy>
+            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/OL20G02060</property>
+            <sequence>
+              <domain_architecture length="1563">
+                <domain confidence="1.1E-102" from="495" to="787">IPR006982</domain>
+                <domain confidence="4.0E-161" from="874" to="1267">IPR013785</domain>
+                <domain confidence="19.755" from="45" to="447">IPR017932</domain>
+                <domain confidence="7.1E-124" from="45" to="416">IPR000583</domain>
+                <domain confidence="1.7E-88" from="1301" to="1555">IPR002489</domain>
+                <domain confidence="1.57E-83" from="1291" to="1548">IPR002489</domain>
+                <domain confidence="5.4E-93" from="488" to="829">IPR013785</domain>
+                <domain confidence="1.1E-150" from="847" to="1237">IPR002932</domain>
+                <domain confidence="4.5E-59" from="1316" to="1508">IPR002489</domain>
+              </domain_architecture>
+            </sequence>
+          </clade>
+        <clade>
+          <name>CR12G06740</name>
+          <branch_length>0.28998</branch_length>
+        <taxonomy>
+              <code>cre</code>
+            </taxonomy>
+            <property applies_to="clade" datatype="xsd:anyURI" ref="See also">http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/genes/view/CR12G06740</property>
+            <sequence>
+              <domain_architecture length="1630">
+                <domain confidence="1.0E-126" from="104" to="473">IPR000583</domain>
+                <domain confidence="2.9E-156" from="907" to="1298">IPR002932</domain>
+                <domain confidence="5.1E-93" from="1362" to="1611">IPR002489</domain>
+                <domain confidence="22.197" from="104" to="504">IPR017932</domain>
+                <domain confidence="1.8E-97" from="543" to="896">IPR013785</domain>
+                <domain confidence="4.0E-169" from="912" to="1336">IPR013785</domain>
+                <domain confidence="6.8E-60" from="1377" to="1568">IPR002489</domain>
+                <domain confidence="7.8E-104" from="555" to="849">IPR006982</domain>
+                <domain confidence="6.28E-88" from="1347" to="1609">IPR002489</domain>
+              </domain_architecture>
+            </sequence>
+          </clade>
+      </clade>
+    </clade>
+  </clade>
+</phylogeny>
+<taxonomies>
+    <taxonomy code="gma">
+      <color>0x186EB5</color>
+      <name>Glycine max</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Glycine+max</url>
+    </taxonomy>
+    <taxonomy code="zma">
+      <color>0x5E610B</color>
+      <name>Zea mays</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Zea+mays</url>
+    </taxonomy>
+    <taxonomy code="mtr">
+      <color>0x4980AD</color>
+      <name>Medicago truncatula</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Medicago+truncatula</url>
+    </taxonomy>
+    <taxonomy code="tca">
+      <color>0x37BD42</color>
+      <name>Theobroma cacao</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Theobroma+cacao</url>
+    </taxonomy>
+    <taxonomy code="fve">
+      <color>0x25ACD9</color>
+      <name>Fragaria vesca</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Fragaria+vesca</url>
+    </taxonomy>
+    <taxonomy code="aly">
+      <color>0x40FF00</color>
+      <name>Arabidopsis lyrata</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Arabidopsis+lyrata</url>
+    </taxonomy>
+    <taxonomy code="cre">
+      <color>0x61210B</color>
+      <name>Chlamydomonas reinhardtii</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Chlamydomonas+reinhardtii</url>
+    </taxonomy>
+    <taxonomy code="cla">
+      <color>0x95C0CF</color>
+      <name>Citrullus lanatus</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Citrullus+lanatus</url>
+    </taxonomy>
+    <taxonomy code="osa">
+      <color>0xF7BE81</color>
+      <name>Oryza sativa ssp. japonica</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Oryza+sativa+ssp.+japonica</url>
+    </taxonomy>
+    <taxonomy code="atr">
+      <color>0xFE844E</color>
+      <name>Amborella trichopoda</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Amborella+trichopoda</url>
+    </taxonomy>
+    <taxonomy code="mes">
+      <color>0x6D68C4</color>
+      <name>Manihot esculenta</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Manihot+esculenta</url>
+    </taxonomy>
+    <taxonomy code="cpa">
+      <color>0xC8FE2E</color>
+      <name>Carica papaya</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Carica+papaya</url>
+    </taxonomy>
+    <taxonomy code="egr">
+      <color>0x516B54</color>
+      <name>Eucalyptus grandis</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Eucalyptus+grandis</url>
+    </taxonomy>
+    <taxonomy code="bra">
+      <color>0xD8F6CE</color>
+      <name>Brassica rapa</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Brassica+rapa</url>
+    </taxonomy>
+    <taxonomy code="olu">
+      <color>0x610B0B</color>
+      <name>Ostreococcus lucimarinus</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Ostreococcus+lucimarinus</url>
+    </taxonomy>
+    <taxonomy code="ath">
+      <color>0x82FA58</color>
+      <name>Arabidopsis thaliana</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Arabidopsis+thaliana</url>
+    </taxonomy>
+    <taxonomy code="bvu">
+      <color>0xA3389D</color>
+      <name>Beta vulgaris</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Beta+vulgaris</url>
+    </taxonomy>
+    <taxonomy code="cru">
+      <color>0x80FF00</color>
+      <name>Capsella rubella</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Capsella+rubella</url>
+    </taxonomy>
+    <taxonomy code="gra">
+      <color>0x37BA49</color>
+      <name>Gossypium raimondii</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Gossypium+raimondii</url>
+    </taxonomy>
+    <taxonomy code="tpa">
+      <color>0xBCF5A9</color>
+      <name>Thellungiella parvula</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Thellungiella+parvula</url>
+    </taxonomy>
+    <taxonomy code="stu">
+      <color>0x9D4FB0</color>
+      <name>Solanum tuberosum</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Solanum+tuberosum</url>
+    </taxonomy>
+    <taxonomy code="rco">
+      <color>0x8986BF</color>
+      <name>Ricinus communis</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Ricinus+communis</url>
+    </taxonomy>
+    <taxonomy code="cme">
+      <color>0xA9C5CF</color>
+      <name>Cucumis melo</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Cucumis+melo</url>
+    </taxonomy>
+    <taxonomy code="mdo">
+      <color>0x4DB4D6</color>
+      <name>Malus domestica</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Malus+domestica</url>
+    </taxonomy>
+    <taxonomy code="sly">
+      <color>0xA378AD</color>
+      <name>Solanum lycopersicum</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Solanum+lycopersicum</url>
+    </taxonomy>
+    <taxonomy code="ppa">
+      <color>0xFE642E</color>
+      <name>Physcomitrella patens</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Physcomitrella+patens</url>
+    </taxonomy>
+    <taxonomy code="csi">
+      <color>0x095C10</color>
+      <name>Citrus sinensis</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Citrus+sinensis</url>
+    </taxonomy>
+    <taxonomy code="ppe">
+      <color>0x73BAD1</color>
+      <name>Prunus persica</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Prunus+persica</url>
+    </taxonomy>
+    <taxonomy code="vvi">
+      <color>0xB595CF</color>
+      <name>Vitis vinifera</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Vitis+vinifera</url>
+    </taxonomy>
+    <taxonomy code="ptr">
+      <color>0x443DC4</color>
+      <name>Populus trichocarpa</name>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/organism/view/Populus+trichocarpa</url>
+    </taxonomy>
+  </taxonomies>
+  <domains>
+    <domain name="IPR016034">
+      <color>0x6FC3D2</color>
+      <description>Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR016034</url>
+    </domain>
+    <domain name="IPR000583">
+      <color>0xFCB87B</color>
+      <description>Class II glutamine amidotransferase domain</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR000583</url>
+    </domain>
+    <domain name="IPR013785">
+      <color>0x2DFDD8</color>
+      <description>Aldolase-type TIM barrel</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR013785</url>
+    </domain>
+    <domain name="IPR028261">
+      <color>0x8F7B5E</color>
+      <description>Dihydroprymidine dehydrogenase domain II</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR028261</url>
+    </domain>
+    <domain name="IPR009051">
+      <color>0x2819CC</color>
+      <description>Alpha-helical ferredoxin</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR009051</url>
+    </domain>
+    <domain name="IPR006005">
+      <color>0x8372B6</color>
+      <description>Glutamate synthase, NADH/NADPH, small subunit 1</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR006005</url>
+    </domain>
+    <domain name="IPR027484">
+      <color>0xABB167</color>
+      <description>Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR027484</url>
+    </domain>
+    <domain name="IPR027483">
+      <color>0xABB267</color>
+      <description>Phosphatidylinositol-4-phosphate 5-kinase, C-terminal</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR027483</url>
+    </domain>
+    <domain name="IPR002932">
+      <color>0xE6FE96</color>
+      <description>Glutamate synthase, central-C</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR002932</url>
+    </domain>
+    <domain name="IPR017932">
+      <color>0xB143C9</color>
+      <description>Glutamine amidotransferase type 2 domain</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR017932</url>
+    </domain>
+    <domain name="IPR023753">
+      <color>0xF8E893</color>
+      <description>Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR023753</url>
+    </domain>
+    <domain name="IPR016040">
+      <color>0x6FC3D2</color>
+      <description>NAD(P)-binding domain</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR016040</url>
+    </domain>
+    <domain name="IPR003409">
+      <color>0xD9F79B</color>
+      <description>MORN motif</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR003409</url>
+    </domain>
+    <domain name="IPR006982">
+      <color>0x6136BE</color>
+      <description>Glutamate synthase, central-N</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR006982</url>
+    </domain>
+    <domain name="IPR013027">
+      <color>0x1EFCD8</color>
+      <description>FAD-dependent pyridine nucleotide-disulphide oxidoreductase</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR013027</url>
+    </domain>
+    <domain name="IPR001327">
+      <color>0xF5E584</color>
+      <description>Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR001327</url>
+    </domain>
+    <domain name="IPR002489">
+      <color>0xF1FC91</color>
+      <description>Glutamate synthase, alpha subunit, C-terminal</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR002489</url>
+    </domain>
+    <domain name="IPR002498">
+      <color>0xF1FC91</color>
+      <description>Phosphatidylinositol-4-phosphate 5-kinase, core</description>
+      <url>http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_dicots/interpro/view/IPR002498</url>
+    </domain>
+  </domains>
+</phyloxml>
diff --git a/submit.php b/submit.php
old mode 100755
new mode 100644
diff --git a/view.php b/view.php
old mode 100755
new mode 100644
index 2269636..2455871
--- a/view.php
+++ b/view.php
@@ -14,6 +14,7 @@
     <script src="libs/js/material.min.js"></script>
 
     <script src="dist/js/phyd3.min.js" type="text/javascript"></script>
+    <script src="js/phyd3.phylogram.js"></script>
     <script>
         (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
             (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
@@ -50,14 +51,28 @@ function load() {
         }
         function loadTree() {            
             d3.select("#phyd3").text("Loading...");
+            var fid = "<?php echo $_GET['id']?>".trim();
             <?php if ($_GET['f'] == 'xml') { ?>
-                d3.xml("submissions/<?php echo $_GET['id']?>", function(xml) {
-                    d3.select("#phyd3").text(null);
+                if (fid == 'taxonomy.xml') {
+                    opts.showDomains = false;
+                }
+                if (fid == 'outergraphs.xml') {
+                    opts.showDomains = false;
+                }
+                if (fid == 'innergraphs.xml') {
+                    opts.nodeHeight = 10;
+                }
+                if (fid == 'domains.xml') {
+                    opts.showFullTaxonomy = false;
+                    opts.showTaxonomyColors = false;
+                }
+                d3.xml("submissions/"+fid, function(xml) {
+                    d3.select("#phyd3").text(null);                    
                     var tree = phyd3.phyloxml.parse(xml);
                     phyd3.phylogram.build("#phyd3", tree, opts);
                 });
             <?php } else if ($_GET['f'] == 'newick') { ?>
-                d3.text("submissions/<?php echo $_GET['id']?>", function(xml) {
+                d3.text("submissions/"+fid, function(xml) {
                     d3.select("#phyd3").text(null);
                     var tree = phyd3.newick.parse(xml);
                     phyd3.phylogram.build("#phyd3", tree, opts);