diff --git a/about.html b/about.html index 34dd0a2..d9f8af2 100644 --- a/about.html +++ b/about.html @@ -7,66 +7,208 @@

About Me

-

Hello There! I'm a software developer focused on using data visualization, data analysis and data science to solve problems and improve capabilities for reasoning and making decisions with data.

+

+ Hello There! I'm a software developer focused on using data visualization, + data analysis and data science to solve problems and improve capabilities + for reasoning and making decisions with data. +

- I work at Zymergen as a Senior Data Visualization and Data Science Engineer. I am very fortunate to be able to combine my passions for data visualization, data science, and biology to make visual solutions for biological problems. + I work at Zymergen as a + Senior Data Visualization and Data Science Engineer. I am very fortunate to + be able to combine my passions for data visualization, data science, and + biology to make visual solutions for biological problems.

- Previously, I have worked at Bocoup as part of the Data Visualization team along with Irene Ros, Yannick Assogba and Peter Beshai. + Previously, I have worked at + Bocoup as part of the Data + Visualization team along with + Irene Ros, + Yannick Assogba and + Peter Beshai.

-

I've also worked for the Nordstrom Data Lab as a Data Visualization Engineer/Data Scientist. And before that, I helped analyze genomic data as a member of the Bioinformatic Group at the very special Stowers Institute.

-

Find out more about me from the links below, find me on Twitter, or drop me an email any time.

+

+ I've also worked for the + Nordstrom Data Lab as a Data + Visualization Engineer/Data Scientist. And before that, I helped analyze + genomic data as a member of the + Bioinformatic Group at + the very special Stowers Institute. +

+

+ Find out more about me from the links below, find me on + Twitter, or drop me an email any + time. +

More Info

-

Projects

-

Apart from my visualizations and tutorials, I've worked on a number of interesting projects, large and small. Here are just a few of them.

-
- textkit -

Command line tool for working and analyzing text. Provides much of the power of a package like nltk, but without having to know how to program!

-
-
- Learn JS Data -

A teaching resource for understanding basic data manipulation tools in Javascript. Got data and need to work with it online? LearnJSData can teach you what to do!

-
-
- Illuminati -

System that completely automates the execution and control of the CASAVA genomic aligment software from Illumina.

-
-
- Hastie -

Built on top of Jekyll, this tool provided a way to centralize and distribute analysis and research done by bioinformaticians.

-
-
- Pipette -

A tool to facilitate the creation of pipelines for processing and analyzing genomic data. Included pipelines for SNP calling and annotation using GATK

-
-
- Lincoln -

Network monitoring with style. Won first place in Perceptive sponsored application development competition. Client written in Ruby on Rails with graphing capabilities from open flash charts.

-
-
- Blertr -

Alerts for long running bash terminal commands. A fun but useful tool that will email you automatically when a long running script or command has completed. Can also notify user through Growl or Twitter

-
-
- Greenword -

Academic research tool for discovering cultural differences through language. Used at Kansas University to share between students in Costa Rica and America. Written in Rails.

-
-
- Mind's Eye -

The start of a face recognition project. Comes in two parts: Mind's Eye - the UI for capturing test data. Implemented in Rails. And Mind's Eye Forest - the detection algorithm written in Ruby and R.

-
+

Publications

+ + + +

Projects

+

+ Apart from my visualizations and + tutorials, I've worked on a number of + interesting projects, large and small. Here are just a few of them. +

+
+ textkit +

+ Command line tool for working and analyzing text. Provides much of the + power of a package like nltk, but + without having to know how to program! +

+
+
+ Learn JS Data +

+ A teaching resource for understanding basic data manipulation tools in + Javascript. Got data and need to work with it online? LearnJSData can + teach you what to do! +

+
+
+ Illuminati +

+ System that completely automates the execution and control of the + CASAVA + genomic aligment software from Illumina. +

+
+
+ Hastie +

+ Built on top of Jekyll, this tool + provided a way to centralize and distribute analysis and research done by + bioinformaticians. +

+
+
+ Pipette +

+ A tool to facilitate the creation of pipelines for processing and + analyzing genomic data. Included pipelines for SNP calling and annotation + using GATK +

+
+
+ Lincoln +

+ Network monitoring with style. Won first place in + Perceptive sponsored + application development competition. Client written in Ruby on Rails with + graphing capabilities from + open flash charts. +

+
+
+ Blertr +

+ Alerts for long running bash terminal commands. A fun but useful tool that + will email you automatically when a long running script or command has + completed. Can also notify user through Growl or Twitter +

+
+
+ Greenword +

+ Academic research tool for discovering cultural differences through + language. Used at Kansas University to share between students in Costa + Rica and America. Written in Rails. +

+
+
+ Mind's Eye +

+ The start of a face recognition project. Comes in two parts: + Mind's Eye - the UI for + capturing test data. Implemented in Rails. And + Mind's Eye Forest + - the detection algorithm written in Ruby and + R. +

+
diff --git a/publications.html b/publications.html index 43e0ffb..59f0909 100644 --- a/publications.html +++ b/publications.html @@ -5,12 +5,28 @@

Here are the few publications I have been privileged to be a part of

-The DEAD Box Helicase RDE-12 Promotes Amplification of RNAi in Cytoplasmic Foci in C. elegans.
+Systematic investigation of CRISPR-Cas9 configurations for flexible and + efficient genome editing in Corynebacterium glutamicum NRRL-B11474.
-Evaluation of Whole Transcriptome Amplification Methods by RNA-Seq
+The DEAD Box Helicase RDE-12 Promotes Amplification of RNAi in Cytoplasmic + Foci in C. elegans.
-Gene Expression Profiling of Picogram Amounts of Mouse Universal Reference RNA Amplified Using the Miltenyi Biotec μMACS SuperAmp Technology
- -The RDE-10/RDE-11 complex triggers RNAi-induced mRNA degradation by association with target mRNA in C. elegans
+Evaluation of Whole Transcriptome Amplification Methods by RNA-Seq
+Gene Expression Profiling of Picogram Amounts of Mouse Universal Reference + RNA Amplified Using the Miltenyi Biotec μMACS SuperAmp Technology
+The RDE-10/RDE-11 complex triggers RNAi-induced mRNA degradation by + association with target mRNA in C. elegans