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jaccard.hpp
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/*
* Copyright (c) 2021-2022, Virginia Tech.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
#ifdef INTEL_FPGA_EXT
// Sometimes it's this path (2022.0.2)
#include <sycl/ext/intel/fpga_extensions.hpp>
// Sometimes it's this path (2021.2.0)
//#include <CL/sycl/INTEL/fpga_extensions.hpp>
#endif
#include "standalone_algorithms.hpp"
#include "standalone_csr.hpp"
#include <iostream>
#ifndef SYCL_DEVICE_ONLY
#define EMULATE_ATOMIC_ADD_FLOAT
#define EMULATE_ATOMIC_ADD_DOUBLE
#endif
#ifdef ICX
#define EMULATE_ATOMIC_ADD_DOUBLE
#endif
#ifndef __JACCARD_HPP__
#define __JACCARD_HPP__
// Kernels are implemented as functors or lambdas in SYCL
template <typename T>
class FillKernel {
cl::sycl::accessor<T, 1, cl::sycl::access::mode::discard_write> ptr;
T value;
size_t n;
public:
FillKernel(cl::sycl::accessor<T, 1, cl::sycl::access::mode::discard_write> ptr, T value, size_t n)
: ptr{ptr}, value{value}, n{n} {
}
SYCL_EXTERNAL const void operator()(cl::sycl::nd_item<1> tid_info) const;
static const cl::sycl::event invoke(size_t n, cl::sycl::buffer<T> &x, T value,
cl::sycl::queue &q);
};
namespace sygraph {
namespace detail {
template <bool weighted, typename vertex_t, typename edge_t, typename weight_t>
class Jaccard_RowSumKernel {
vertex_t n;
cl::sycl::accessor<edge_t, 1, cl::sycl::access::mode::read> csrPtr;
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> csrInd;
// FIXME, with std::conditional_t we should be able to simplify out some of the code paths in the
// other weight-branching kernels
#ifdef NEEDS_NULL_DEVICE_PTR
std::conditional_t<weighted, cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read>,
cl::sycl::device_ptr<std::nullptr_t>>
v;
#else
std::conditional_t<weighted, cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read>,
std::nullptr_t>
v;
#endif
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::discard_write> work;
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read_write,
cl::sycl::access::target::local>
shfl_temp;
public:
template <typename = std::enable_if<weighted>>
Jaccard_RowSumKernel(vertex_t n,
cl::sycl::accessor<edge_t, 1, cl::sycl::access::mode::read> csrPtr,
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> csrInd,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read> v,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::discard_write> work,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read_write,
cl::sycl::access::target::local>
shfl_temp)
: n{n}, csrInd{csrInd}, csrPtr{csrPtr}, v{v}, work{work}, shfl_temp{shfl_temp} {
}
// When not using weights, we don't care about v
template <typename = std::enable_if<!weighted>>
Jaccard_RowSumKernel(vertex_t n,
cl::sycl::accessor<edge_t, 1, cl::sycl::access::mode::read> csrPtr,
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> csrInd,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::discard_write> work,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read_write,
cl::sycl::access::target::local>
shfl_temp)
: n{n}, csrInd{csrInd}, csrPtr{csrPtr}, work{work}, shfl_temp{shfl_temp} {
}
// Volume of neighboors (*weight_s)
// Must be marked external since main.cpp uses it
SYCL_EXTERNAL const void operator()(cl::sycl::nd_item<2> tid_info) const;
static const cl::sycl::event invoke(vertex_t n, edge_t e, cl::sycl::buffer<edge_t> &csrPtr,
cl::sycl::buffer<vertex_t> &csrInd,
cl::sycl::buffer<weight_t> *weight_in,
cl::sycl::buffer<weight_t> &work, cl::sycl::queue &q);
};
// Volume of intersections (*weight_i) and cumulated volume of neighboors (*weight_s)
template <bool weighted, typename vertex_t, typename edge_t, typename weight_t>
class Jaccard_IsKernel {
vertex_t n;
cl::sycl::accessor<edge_t, 1, cl::sycl::access::mode::read> csrPtr;
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> csrInd;
// FIXME, what to do if this isn't present?
#ifdef NEEDS_NULL_DEVICE_PTR
std::conditional_t<weighted, cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read>,
cl::sycl::device_ptr<std::nullptr_t>>
v;
#else
std::conditional_t<weighted, cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read>,
std::nullptr_t>
v;
#endif
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read> work;
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read_write> weight_i;
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::discard_write> weight_s;
public:
template <typename = std::enable_if<weighted>>
Jaccard_IsKernel(vertex_t n, cl::sycl::accessor<edge_t, 1, cl::sycl::access::mode::read> csrPtr,
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> csrInd,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read> v,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read> work,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read_write> weight_i,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::discard_write> weight_s)
: n{n}, csrInd{csrInd}, csrPtr{csrPtr}, v{v}, work{work}, weight_i{weight_i}, weight_s{
weight_s} {
}
// When not using weights, we don't care about v
template <typename = std::enable_if<!weighted>>
Jaccard_IsKernel(vertex_t n, cl::sycl::accessor<edge_t, 1, cl::sycl::access::mode::read> csrPtr,
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> csrInd,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read> work,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read_write> weight_i,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::discard_write> weight_s)
: n{n}, csrInd{csrInd}, csrPtr{csrPtr}, work{work}, weight_i{weight_i}, weight_s{weight_s} {
}
SYCL_EXTERNAL const void operator()(cl::sycl::nd_item<3> tid_info) const;
static const cl::sycl::event invoke(vertex_t n, edge_t e, cl::sycl::buffer<edge_t> &csrPtr,
cl::sycl::buffer<vertex_t> &csrInd,
cl::sycl::buffer<weight_t> *weight_in,
cl::sycl::buffer<weight_t> &work,
cl::sycl::buffer<weight_t> &weight_i,
cl::sycl::buffer<weight_t> &weight_s, cl::sycl::queue &q);
};
// Volume of intersections (*weight_i) and cumulated volume of neighboors (*weight_s)
// Using list of node pairs
template <bool weighted, typename vertex_t, typename edge_t, typename weight_t>
class Jaccard_IsPairsKernel {
edge_t num_pairs;
cl::sycl::accessor<edge_t, 1, cl::sycl::access::mode::read> csrPtr;
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> csrInd;
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> first_pair;
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> second_pair;
// FIXME, what to do if this isn't present?
#ifdef NEEDS_NULL_DEVICE_PTR
std::conditional_t<weighted, cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read>,
cl::sycl::device_ptr<std::nullptr_t>>
v;
#else
std::conditional_t<weighted, cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read>,
std::nullptr_t>
v;
#endif
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read> work;
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read_write> weight_i;
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::discard_write> weight_s;
public:
template <typename = std::enable_if<weighted>>
Jaccard_IsPairsKernel(
edge_t num_pairs, cl::sycl::accessor<edge_t, 1, cl::sycl::access::mode::read> csrPtr,
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> csrInd,
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> first_pair,
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> second_pair,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read> v,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read> work,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read_write> weight_i,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::discard_write> weight_s)
: num_pairs{num_pairs}, csrInd{csrInd}, csrPtr{csrPtr}, first_pair{first_pair},
second_pair{second_pair}, v{v}, work{work}, weight_i{weight_i}, weight_s{weight_s} {
}
// When not using weights, we don't care about v
template <typename = std::enable_if<!weighted>>
Jaccard_IsPairsKernel(
edge_t num_pairs, cl::sycl::accessor<edge_t, 1, cl::sycl::access::mode::read> csrPtr,
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> csrInd,
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> first_pair,
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> second_pair,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read> work,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read_write> weight_i,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::discard_write> weight_s)
: num_pairs{num_pairs}, csrInd{csrInd}, csrPtr{csrPtr}, first_pair{first_pair},
second_pair{second_pair}, work{work}, weight_i{weight_i}, weight_s{weight_s} {
}
SYCL_EXTERNAL const void operator()(cl::sycl::nd_item<3> tid_info) const;
static const cl::sycl::event
invoke(vertex_t n, edge_t num_pairs, cl::sycl::buffer<edge_t> &csrPtr,
cl::sycl::buffer<vertex_t> &csrInd, cl::sycl::buffer<vertex_t> &first_pair,
cl::sycl::buffer<vertex_t> &second_pair, cl::sycl::buffer<weight_t> *weight_in,
cl::sycl::buffer<weight_t> &work, cl::sycl::buffer<weight_t> &weight_i,
cl::sycl::buffer<weight_t> &weight_s,
cl::sycl::buffer<weight_t> &weight_j, cl::sycl::queue &q);
};
// Jaccard weights (*weight)
template <typename vertex_t, typename edge_t, typename weight_t>
class Jaccard_JwKernel {
edge_t e;
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read> weight_i;
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read> weight_s;
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::discard_write> weight_j;
public:
Jaccard_JwKernel(edge_t e, cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read> weight_i,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read> weight_s,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::discard_write> weight_j)
: e{e}, weight_i{weight_i}, weight_s{weight_s}, weight_j{weight_j} {
}
SYCL_EXTERNAL const void operator()(cl::sycl::nd_item<1> tid_info) const;
static const cl::sycl::event invoke(edge_t e, cl::sycl::buffer<weight_t> &weight_i,
cl::sycl::buffer<weight_t> &weight_s,
cl::sycl::buffer<weight_t> &weight_j, cl::sycl::queue &q);
};
template <typename vertex_t, typename edge_t, typename weight_t>
class Jaccard_ec_scan {
edge_t e;
vertex_t n;
cl::sycl::accessor<edge_t, 1, cl::sycl::access::mode::read> csrPtr;
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read_write> dest_ind;
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read_write> weight_j;
public:
Jaccard_ec_scan(edge_t e, vertex_t n,
cl::sycl::accessor<edge_t, 1, cl::sycl::access::mode::read> csrPtr,
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read_write> dest_ind,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read_write> weight_j)
: e{e}, n{n}, csrPtr{csrPtr}, dest_ind{dest_ind}, weight_j{weight_j} {
}
SYCL_EXTERNAL const void operator()(cl::sycl::nd_item<1> tid_info) const;
static const cl::sycl::event invoke(edge_t e, vertex_t n, cl::sycl::buffer<edge_t> &csrPtr,
cl::sycl::buffer<vertex_t> &dest_ind,
cl::sycl::buffer<weight_t> &weight_j, cl::sycl::queue &q);
};
// Edge-centric-unweighted-kernel
template <typename vertex_t, typename edge_t, typename weight_t>
class Jaccard_ec_unweighted {
edge_t e;
vertex_t n;
cl::sycl::accessor<edge_t, 1, cl::sycl::access::mode::read> csrPtr;
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> csrInd;
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> dest_ind;
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read_write> weight_j;
public:
Jaccard_ec_unweighted(
edge_t e, vertex_t n, cl::sycl::accessor<edge_t, 1, cl::sycl::access::mode::read> csrPtr,
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> csrInd,
cl::sycl::accessor<vertex_t, 1, cl::sycl::access::mode::read> dest_ind,
cl::sycl::accessor<weight_t, 1, cl::sycl::access::mode::read_write> weight_j)
: e{e}, n{n}, csrPtr{csrPtr}, csrInd{csrInd}, dest_ind{dest_ind}, weight_j{weight_j} {
}
SYCL_EXTERNAL const void operator()(cl::sycl::nd_item<1> tid_info) const;
static const cl::sycl::event invoke(edge_t e, vertex_t n, cl::sycl::buffer<edge_t> &csrPtr,
cl::sycl::buffer<vertex_t> &csrInd,
cl::sycl::buffer<vertex_t> &dest_ind,
cl::sycl::buffer<weight_t> &weight_j, cl::sycl::queue &q);
};
} // namespace detail
} // namespace sygraph
#endif //__JACCARD_HPP__