diff --git a/Cargo.lock b/Cargo.lock index 7b70baac..47ef1a62 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -4,19 +4,13 @@ version = 4 [[package]] name = "addr2line" -version = "0.22.0" +version = "0.24.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6e4503c46a5c0c7844e948c9a4d6acd9f50cccb4de1c48eb9e291ea17470c678" +checksum = "dfbe277e56a376000877090da837660b4427aad530e3028d44e0bffe4f89a1c1" dependencies = [ "gimli", ] -[[package]] -name = "adler" -version = "1.0.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe" - [[package]] name = "adler2" version = "2.0.0" @@ -69,9 +63,9 @@ dependencies = [ [[package]] name = "allocator-api2" -version = "0.2.18" +version = "0.2.21" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5c6cb57a04249c6480766f7f7cef5467412af1490f8d1e243141daddada3264f" +checksum = "683d7910e743518b0e34f1186f92494becacb047c7b6bf616c96772180fef923" [[package]] name = "android-tzdata" @@ -96,9 +90,9 @@ checksum = "4b46cbb362ab8752921c97e041f5e366ee6297bd428a31275b9fcf1e380f7299" [[package]] name = "anstream" -version = "0.6.15" +version = "0.6.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "64e15c1ab1f89faffbf04a634d5e1962e9074f2741eef6d97f3c4e322426d526" +checksum = "8acc5369981196006228e28809f761875c0327210a891e941f4c683b3a99529b" dependencies = [ "anstyle", "anstyle-parse", @@ -111,43 +105,43 @@ dependencies = [ [[package]] name = "anstyle" -version = "1.0.8" +version = "1.0.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1bec1de6f59aedf83baf9ff929c98f2ad654b97c9510f4e70cf6f661d49fd5b1" +checksum = "55cc3b69f167a1ef2e161439aa98aed94e6028e5f9a59be9a6ffb47aef1651f9" [[package]] name = "anstyle-parse" -version = "0.2.5" +version = "0.2.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eb47de1e80c2b463c735db5b217a0ddc39d612e7ac9e2e96a5aed1f57616c1cb" +checksum = "3b2d16507662817a6a20a9ea92df6652ee4f94f914589377d69f3b21bc5798a9" dependencies = [ "utf8parse", ] [[package]] name = "anstyle-query" -version = "1.1.1" +version = "1.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6d36fc52c7f6c869915e99412912f22093507da8d9e942ceaf66fe4b7c14422a" +checksum = "79947af37f4177cfead1110013d678905c37501914fba0efea834c3fe9a8d60c" dependencies = [ - "windows-sys 0.52.0", + "windows-sys 0.59.0", ] [[package]] name = "anstyle-wincon" -version = "3.0.4" +version = "3.0.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5bf74e1b6e971609db8ca7a9ce79fd5768ab6ae46441c572e46cf596f59e57f8" +checksum = "2109dbce0e72be3ec00bed26e6a7479ca384ad226efdd66db8fa2e3a38c83125" dependencies = [ "anstyle", - "windows-sys 0.52.0", + "windows-sys 0.59.0", ] [[package]] name = "anyhow" -version = "1.0.86" +version = "1.0.94" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b3d1d046238990b9cf5bcde22a3fb3584ee5cf65fb2765f454ed428c7a0063da" +checksum = "c1fd03a028ef38ba2276dce7e33fcd6369c158a1bca17946c4b1b701891c1ff7" [[package]] name = "apache-avro" @@ -170,7 +164,7 @@ dependencies = [ "snap", "strum 0.25.0", "strum_macros 0.25.3", - "thiserror 1.0.63", + "thiserror 1.0.69", "typed-builder", "uuid", "xz2", @@ -179,9 +173,9 @@ dependencies = [ [[package]] name = "arrayref" -version = "0.3.8" +version = "0.3.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9d151e35f61089500b617991b791fc8bfd237ae50cd5950803758a179b41e67a" +checksum = "76a2e8124351fda1ef8aaaa3bbd7ebbcb486bbcd4225aca0aa0d84bb2db8fecb" [[package]] name = "arrayvec" @@ -191,9 +185,9 @@ checksum = "7c02d123df017efcdfbd739ef81735b36c5ba83ec3c59c80a9d7ecc718f92e50" [[package]] name = "arrow" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "05048a8932648b63f21c37d88b552ccc8a65afb6dfe9fc9f30ce79174c2e7a85" +checksum = "c91839b07e474b3995035fd8ac33ee54f9c9ccbbb1ea33d9909c71bffdf1259d" dependencies = [ "arrow-arith", "arrow-array", @@ -212,9 +206,9 @@ dependencies = [ [[package]] name = "arrow-arith" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1d8a57966e43bfe9a3277984a14c24ec617ad874e4c0e1d2a1b083a39cfbf22c" +checksum = "855c57c4efd26722b044dcd3e348252560e3e0333087fb9f6479dc0bf744054f" dependencies = [ "arrow-array", "arrow-buffer", @@ -227,9 +221,9 @@ dependencies = [ [[package]] name = "arrow-array" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "16f4a9468c882dc66862cef4e1fd8423d47e67972377d85d80e022786427768c" +checksum = "bd03279cea46569acf9295f6224fbc370c5df184b4d2ecfe97ccb131d5615a7f" dependencies = [ "ahash", "arrow-buffer", @@ -238,15 +232,15 @@ dependencies = [ "chrono", "chrono-tz", "half", - "hashbrown 0.14.5", + "hashbrown 0.15.2", "num", ] [[package]] name = "arrow-buffer" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c975484888fc95ec4a632cdc98be39c085b1bb518531b0c80c5d462063e5daa1" +checksum = "9e4a9b9b1d6d7117f6138e13bc4dd5daa7f94e671b70e8c9c4dc37b4f5ecfc16" dependencies = [ "bytes", "half", @@ -255,9 +249,9 @@ dependencies = [ [[package]] name = "arrow-cast" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "da26719e76b81d8bc3faad1d4dbdc1bcc10d14704e63dc17fc9f3e7e1e567c8e" +checksum = "bc70e39916e60c5b7af7a8e2719e3ae589326039e1e863675a008bee5ffe90fd" dependencies = [ "arrow-array", "arrow-buffer", @@ -269,16 +263,16 @@ dependencies = [ "chrono", "comfy-table", "half", - "lexical-core 0.8.5", + "lexical-core", "num", "ryu", ] [[package]] name = "arrow-csv" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c13c36dc5ddf8c128df19bab27898eea64bf9da2b555ec1cd17a8ff57fba9ec2" +checksum = "789b2af43c1049b03a8d088ff6b2257cdcea1756cd76b174b1f2600356771b97" dependencies = [ "arrow-array", "arrow-buffer", @@ -289,15 +283,15 @@ dependencies = [ "csv", "csv-core", "lazy_static", - "lexical-core 0.8.5", + "lexical-core", "regex", ] [[package]] name = "arrow-data" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dd9d6f18c65ef7a2573ab498c374d8ae364b4a4edf67105357491c031f716ca5" +checksum = "e4e75edf21ffd53744a9b8e3ed11101f610e7ceb1a29860432824f1834a1f623" dependencies = [ "arrow-buffer", "arrow-schema", @@ -307,9 +301,9 @@ dependencies = [ [[package]] name = "arrow-ipc" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e786e1cdd952205d9a8afc69397b317cfbb6e0095e445c69cda7e8da5c1eeb0f" +checksum = "d186a909dece9160bf8312f5124d797884f608ef5435a36d9d608e0b2a9bcbf8" dependencies = [ "arrow-array", "arrow-buffer", @@ -322,9 +316,9 @@ dependencies = [ [[package]] name = "arrow-json" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fb22284c5a2a01d73cebfd88a33511a3234ab45d66086b2ca2d1228c3498e445" +checksum = "b66ff2fedc1222942d0bd2fd391cb14a85baa3857be95c9373179bd616753b85" dependencies = [ "arrow-array", "arrow-buffer", @@ -333,8 +327,8 @@ dependencies = [ "arrow-schema", "chrono", "half", - "indexmap 2.4.0", - "lexical-core 0.8.5", + "indexmap", + "lexical-core", "num", "serde", "serde_json", @@ -342,9 +336,9 @@ dependencies = [ [[package]] name = "arrow-ord" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "42745f86b1ab99ef96d1c0bcf49180848a64fe2c7a7a0d945bc64fa2b21ba9bc" +checksum = "ece7b5bc1180e6d82d1a60e1688c199829e8842e38497563c3ab6ea813e527fd" dependencies = [ "arrow-array", "arrow-buffer", @@ -357,9 +351,9 @@ dependencies = [ [[package]] name = "arrow-row" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4cd09a518c602a55bd406bcc291a967b284cfa7a63edfbf8b897ea4748aad23c" +checksum = "745c114c8f0e8ce211c83389270de6fbe96a9088a7b32c2a041258a443fe83ff" dependencies = [ "ahash", "arrow-array", @@ -371,9 +365,9 @@ dependencies = [ [[package]] name = "arrow-schema" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9e972cd1ff4a4ccd22f86d3e53e835c2ed92e0eea6a3e8eadb72b4f1ac802cf8" +checksum = "b95513080e728e4cec37f1ff5af4f12c9688d47795d17cda80b6ec2cf74d4678" dependencies = [ "bitflags 2.6.0", "serde", @@ -381,9 +375,9 @@ dependencies = [ [[package]] name = "arrow-select" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "600bae05d43483d216fb3494f8c32fdbefd8aa4e1de237e790dbb3d9f44690a3" +checksum = "8e415279094ea70323c032c6e739c48ad8d80e78a09bef7117b8718ad5bf3722" dependencies = [ "ahash", "arrow-array", @@ -395,9 +389,9 @@ dependencies = [ [[package]] name = "arrow-string" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f0dc1985b67cb45f6606a248ac2b4a288849f196bab8c657ea5589f47cdd55e6" +checksum = "11d956cae7002eb8d83a27dbd34daaea1cf5b75852f0b84deb4d93a276e92bbf" dependencies = [ "arrow-array", "arrow-buffer", @@ -407,14 +401,14 @@ dependencies = [ "memchr", "num", "regex", - "regex-syntax 0.8.4", + "regex-syntax 0.8.5", ] [[package]] name = "async-compression" -version = "0.4.12" +version = "0.4.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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-checksum = "0c4b4d0bd25bd0b74681c0ad21497610ce1b7c91b1022cd21c80c6fbdd9476b0" +checksum = "ace50bade8e6234aa140d9a2f552bbee1db4d353f69b8217bc503490fc1a9f26" [[package]] name = "aws-config" -version = "0.55.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bcdcf0d683fe9c23d32cf5b53c9918ea0a500375a9fb20109802552658e576c9" -dependencies = [ - "aws-credential-types 0.55.3", - "aws-http", - "aws-sdk-sso 0.28.0", - "aws-sdk-sts 0.28.0", - "aws-smithy-async 0.55.3", - "aws-smithy-client", - "aws-smithy-http 0.55.3", - "aws-smithy-http-tower", - "aws-smithy-json 0.55.3", - "aws-smithy-types 0.55.3", - "aws-types 0.55.3", - "bytes", - "fastrand 1.9.0", - "hex", - "http 0.2.12", - "hyper 0.14.30", - "ring 0.16.20", - "time", - "tokio", - "tower", - "tracing", - "zeroize", -] - -[[package]] -name = "aws-config" -version = "1.5.5" +version = "1.5.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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"fastrand", "http 0.2.12", "http-body 0.4.6", "once_cell", @@ -630,21 +537,21 @@ dependencies = [ [[package]] name = "aws-sdk-dynamodb" -version = "1.42.0" +version = "1.56.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6aadafd673822026e7ae6be7900c7886f609514b620874c9e3054f4ae38ab82f" +checksum = "34ba7f3f9fa39ae0d877e69c7abb145571e0b6ed8a1b570f36dbd147176e4019" dependencies = [ - "aws-credential-types 1.2.1", + "aws-credential-types", "aws-runtime", - "aws-smithy-async 1.2.1", - "aws-smithy-http 0.60.9", - "aws-smithy-json 0.60.7", + "aws-smithy-async", + "aws-smithy-http", + "aws-smithy-json", "aws-smithy-runtime", "aws-smithy-runtime-api", - "aws-smithy-types 1.2.4", - "aws-types 1.3.3", + "aws-smithy-types", + "aws-types", "bytes", - "fastrand 2.1.0", + "fastrand", "http 0.2.12", "once_cell", "regex-lite", @@ -653,44 +560,19 @@ dependencies = [ [[package]] name = "aws-sdk-sso" -version = "0.28.0" -source = 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"android-tzdata", "iana-time-zone", @@ -1370,9 +1072,9 @@ dependencies = [ [[package]] name = "chrono-tz" -version = "0.9.0" +version = "0.10.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "93698b29de5e97ad0ae26447b344c482a7284c737d9ddc5f9e52b74a336671bb" +checksum = "cd6dd8046d00723a59a2f8c5f295c515b9bb9a331ee4f8f3d4dd49e428acd3b6" dependencies = [ "chrono", "chrono-tz-build", @@ -1381,12 +1083,11 @@ dependencies = [ [[package]] name = "chrono-tz-build" -version = "0.3.0" +version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0c088aee841df9c3041febbb73934cfc39708749bf96dc827e3359cd39ef11b1" +checksum = "e94fea34d77a245229e7746bd2beb786cd2a896f306ff491fb8cecb3074b10a7" dependencies = [ "parse-zoneinfo", - "phf", "phf_codegen", ] @@ -1425,54 +1126,24 @@ checksum = "b0fc239e0f6cb375d2402d48afb92f76f5404fd1df208a41930ec81eda078bea" [[package]] name = "clap" -version = "3.2.25" +version = "4.5.23" source = 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- "clap_lex 0.7.2", - "strsim 0.11.1", -] - -[[package]] -name = "clap_derive" -version = "3.2.25" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ae6371b8bdc8b7d3959e9cf7b22d4435ef3e79e138688421ec654acf8c81b008" -dependencies = [ - "heck 0.4.1", - "proc-macro-error", - "proc-macro2", - "quote", - "syn 1.0.109", + "clap_lex", + "strsim", ] [[package]] @@ -1489,28 +1160,17 @@ dependencies = [ [[package]] name = "clap_lex" -version = "0.2.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2850f2f5a82cbf437dd5af4d49848fbdfc27c157c3d010345776f952765261c5" -dependencies = [ - "os_str_bytes", -] - -[[package]] -name = "clap_lex" -version = "0.7.2" +version = "0.7.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1462739cb27611015575c0c11df5df7601141071f07518d56fcc1be504cbec97" +checksum = "f46ad14479a25103f283c0f10005961cf086d8dc42205bb44c46ac563475dca6" [[package]] name = "clipboard-win" -version = 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"24f165e7b643266ea80cb858aed492ad9280e3e05ce24d4a99d7d7b889b6a4d9" dependencies = [ "strum 0.26.3", "strum_macros 0.26.4", - "unicode-width", + "unicode-width 0.2.0", ] [[package]] @@ -1558,9 +1218,9 @@ dependencies = [ [[package]] name = "constant_time_eq" -version = "0.3.0" +version = "0.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f7144d30dcf0fafbce74250a3963025d8d52177934239851c917d29f1df280c2" +checksum = "7c74b8349d32d297c9134b8c88677813a227df8f779daa29bfc29c183fe3dca6" [[package]] name = "core-foundation" @@ -1572,6 +1232,16 @@ dependencies = [ "libc", ] +[[package]] +name = "core-foundation" +version = "0.10.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b55271e5c8c478ad3f38ad24ef34923091e0548492a266d19b3c0b4d82574c63" +dependencies = [ + "core-foundation-sys", + "libc", +] + [[package]] name = "core-foundation-sys" version = "0.8.7" @@ -1589,9 +1259,9 @@ dependencies = [ [[package]] name = "cpufeatures" -version = "0.2.13" +version = "0.2.16" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "51e852e6dc9a5bed1fae92dd2375037bf2b768725bf3be87811edee3249d09ad" +checksum = "16b80225097f2e5ae4e7179dd2266824648f3e2f49d9134d584b76389d31c4c3" dependencies = [ "libc", ] @@ -1614,7 +1284,7 @@ dependencies = [ "anes", "cast", "ciborium", - "clap 4.5.22", + "clap", "criterion-plot", "futures", "is-terminal", @@ -1645,18 +1315,18 @@ dependencies = [ [[package]] name = "crossbeam-channel" -version = "0.5.13" +version = "0.5.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "33480d6946193aa8033910124896ca395333cae7e2d1113d1fef6c3272217df2" +checksum = "06ba6d68e24814cb8de6bb986db8222d3a027d15872cabc0d18817bc3c0e4471" dependencies = [ "crossbeam-utils", ] [[package]] name = "crossbeam-deque" -version = "0.8.5" +version = "0.8.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "613f8cc01fe9cf1a3eb3d7f488fd2fa8388403e97039e2f73692932e291a770d" +checksum = "9dd111b7b7f7d55b72c0a6ae361660ee5853c9af73f70c3c2ef6858b950e2e51" dependencies = [ "crossbeam-epoch", "crossbeam-utils", @@ -1673,9 +1343,9 @@ dependencies = [ [[package]] name = "crossbeam-utils" -version = "0.8.20" +version = "0.8.21" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "22ec99545bb0ed0ea7bb9b8e1e9122ea386ff8a48c0922e43f36d45ab09e0e80" +checksum = "d0a5c400df2834b80a4c3327b3aad3a4c4cd4de0629063962b03235697506a28" [[package]] name = "crunchy" @@ -1695,9 +1365,9 @@ dependencies = [ [[package]] name = "csv" -version = "1.3.0" +version = "1.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ac574ff4d437a7b5ad237ef331c17ccca63c46479e5b5453eb8e10bb99a759fe" +checksum = "acdc4883a9c96732e4733212c01447ebd805833b7275a73ca3ee080fd77afdaf" dependencies = [ "csv-core", "itoa", @@ -1716,15 +1386,15 @@ dependencies = [ [[package]] name = "dary_heap" -version = "0.3.6" +version = "0.3.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7762d17f1241643615821a8455a0b2c3e803784b058693d990b11f2dce25a0ca" +checksum = "04d2cd9c18b9f454ed67da600630b021a8a80bf33f8c95896ab33aaf1c26b728" [[package]] name = "dashmap" -version = "6.0.1" +version = "6.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "804c8821570c3f8b70230c2ba75ffa5c0f9a4189b9a432b6656c536712acae28" +checksum = "5041cc499144891f3790297212f32a74fb938e5136a14943f338ef9e0ae276cf" dependencies = [ "cfg-if", "crossbeam-utils", @@ -1736,9 +1406,9 @@ dependencies = [ [[package]] name = "datafusion" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e4fd4a99fc70d40ef7e52b243b4a399c3f8d353a40d5ecb200deee05e49c61bb" +checksum = "cbba0799cf6913b456ed07a94f0f3b6e12c62a5d88b10809e2284a0f2b915c05" dependencies = [ "ahash", "apache-avro", @@ -1760,6 +1430,7 @@ dependencies = [ "datafusion-functions", "datafusion-functions-aggregate", "datafusion-functions-nested", + "datafusion-functions-window", "datafusion-optimizer", "datafusion-physical-expr", "datafusion-physical-expr-common", @@ -1771,8 +1442,8 @@ dependencies = [ "glob", "half", "hashbrown 0.14.5", - "indexmap 2.4.0", - "itertools 0.12.1", + "indexmap", + "itertools 0.13.0", "log", "num-traits", "num_cpus", @@ -1794,9 +1465,9 @@ dependencies = [ [[package]] name = "datafusion-catalog" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e13b3cfbd84c6003594ae1972314e3df303a27ce8ce755fcea3240c90f4c0529" +checksum = "7493c5c2d40eec435b13d92e5703554f4efc7059451fcb8d3a79580ff0e45560" dependencies = [ "arrow-schema", "async-trait", @@ -1804,19 +1475,23 @@ dependencies = [ "datafusion-execution", "datafusion-expr", "datafusion-physical-plan", + "parking_lot", ] [[package]] name = "datafusion-cli" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "74d0fa5cbff811286609829b4d1b336d65f2d714898c0b31a6dafb770f165e88" +checksum = "ab715aaa96de17bf8cb5329a83712ccda7b7941ab22f3e523989a3b3a0710cc1" dependencies = [ "arrow", "async-trait", - "aws-config 0.55.3", - "aws-credential-types 0.55.3", - "clap 3.2.25", + "aws-config", + "aws-credential-types", + "aws-sdk-sso", + "aws-sdk-ssooidc", + "aws-sdk-sts", + "clap", "datafusion", "dirs", "env_logger", @@ -1833,9 +1508,9 @@ dependencies = [ [[package]] name = "datafusion-common" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "44fdbc877e3e40dcf88cc8f283d9f5c8851f0a3aa07fee657b1b75ac1ad49b9c" +checksum = "24953049ebbd6f8964f91f60aa3514e121b5e81e068e33b60e77815ab369b25c" dependencies = [ "ahash", "apache-avro", @@ -1846,28 +1521,32 @@ dependencies = [ "chrono", "half", "hashbrown 0.14.5", + "indexmap", "instant", "libc", "num_cpus", "object_store", "parquet", + "paste", "sqlparser", + "tokio", ] [[package]] name = "datafusion-common-runtime" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8a7496d1f664179f6ce3a5cbef6566056ccaf3ea4aa72cc455f80e62c1dd86b1" +checksum = "f06df4ef76872e11c924d3c814fd2a8dd09905ed2e2195f71c857d78abd19685" dependencies = [ + "log", "tokio", ] [[package]] name = "datafusion-execution" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "799e70968c815b611116951e3dd876aef04bf217da31b72eec01ee6a959336a1" +checksum = "6bbdcb628d690f3ce5fea7de81642b514486d58ff9779a51f180a69a4eadb361" dependencies = [ "arrow", "chrono", @@ -1886,9 +1565,9 @@ dependencies = [ [[package]] name = "datafusion-expr" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1c1841c409d9518c17971d15c9bae62e629eb937e6fb6c68cd32e9186f8b30d2" +checksum = "8036495980e3131f706b7d33ab00b4492d73dc714e3cb74d11b50f9602a73246" dependencies = [ "ahash", "arrow", @@ -1896,6 +1575,11 @@ dependencies = [ "arrow-buffer", "chrono", "datafusion-common", + "datafusion-expr-common", + "datafusion-functions-aggregate-common", + "datafusion-functions-window-common", + "datafusion-physical-expr-common", + "indexmap", "paste", "serde_json", "sqlparser", @@ -1903,11 +1587,23 @@ dependencies = [ "strum_macros 0.26.4", ] +[[package]] +name = "datafusion-expr-common" +version = "43.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4da0f3cb4669f9523b403d6b5a0ec85023e0ab3bf0183afd1517475b3e64fdd2" +dependencies = [ + "arrow", + "datafusion-common", + "itertools 0.13.0", + "paste", +] + [[package]] name = "datafusion-functions" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a8e481cf34d2a444bd8fa09b65945f0ce83dc92df8665b761505b3d9f351bebb" +checksum = "f52c4012648b34853e40a2c6bcaa8772f837831019b68aca384fb38436dba162" dependencies = [ "arrow", "arrow-buffer", @@ -1920,7 +1616,7 @@ dependencies = [ "datafusion-expr", "hashbrown 0.14.5", "hex", - "itertools 0.12.1", + "itertools 0.13.0", "log", "md-5", "rand", @@ -1932,9 +1628,9 @@ dependencies = [ [[package]] name = "datafusion-functions-aggregate" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2b4ece19f73c02727e5e8654d79cd5652de371352c1df3c4ac3e419ecd6943fb" +checksum = "e5b8bb624597ba28ed7446df4a9bd7c7a7bde7c578b6b527da3f47371d5f6741" dependencies = [ "ahash", "arrow", @@ -1942,17 +1638,34 @@ dependencies = [ "datafusion-common", "datafusion-execution", "datafusion-expr", + "datafusion-functions-aggregate-common", + "datafusion-physical-expr", "datafusion-physical-expr-common", + "half", + "indexmap", "log", "paste", - "sqlparser", +] + +[[package]] +name = "datafusion-functions-aggregate-common" +version = "43.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "6fb06208fc470bc8cf1ce2d9a1159d42db591f2c7264a8c1776b53ad8f675143" +dependencies = [ + "ahash", + "arrow", + "datafusion-common", + "datafusion-expr-common", + "datafusion-physical-expr-common", + "rand", ] [[package]] name = "datafusion-functions-nested" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a1474552cc824e8c9c88177d454db5781d4b66757d4aca75719306b8343a5e8d" +checksum = "fca25bbb87323716d05e54114666e942172ccca23c5a507e9c7851db6e965317" dependencies = [ "arrow", "arrow-array", @@ -1964,17 +1677,43 @@ dependencies = [ "datafusion-expr", "datafusion-functions", "datafusion-functions-aggregate", - "itertools 0.12.1", + "datafusion-physical-expr-common", + "itertools 0.13.0", "log", "paste", "rand", ] +[[package]] +name = "datafusion-functions-window" +version = "43.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5ae23356c634e54c59f7c51acb7a5b9f6240ffb2cf997049a1a24a8a88598dbe" +dependencies = [ + "datafusion-common", + "datafusion-expr", + "datafusion-functions-window-common", + "datafusion-physical-expr", + "datafusion-physical-expr-common", + "log", + "paste", +] + +[[package]] +name = "datafusion-functions-window-common" +version = "43.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d4b3d6ff7794acea026de36007077a06b18b89e4f9c3fea7f2215f9f7dd9059b" +dependencies = [ + "datafusion-common", + "datafusion-physical-expr-common", +] + [[package]] name = "datafusion-optimizer" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "791ff56f55608bc542d1ea7a68a64bdc86a9413f5a381d06a39fd49c2a3ab906" +checksum = "bec6241eb80c595fa0e1a8a6b69686b5cf3bd5fdacb8319582a0943b0bd788aa" dependencies = [ "arrow", "async-trait", @@ -1983,18 +1722,18 @@ dependencies = [ "datafusion-expr", "datafusion-physical-expr", "hashbrown 0.14.5", - "indexmap 2.4.0", - "itertools 0.12.1", + "indexmap", + "itertools 0.13.0", "log", "paste", - "regex-syntax 0.8.4", + "regex-syntax 0.8.5", ] [[package]] name = "datafusion-physical-expr" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9a223962b3041304a3e20ed07a21d5de3d88d7e4e71ca192135db6d24e3365a4" +checksum = "3370357b8fc75ec38577700644e5d1b0bc78f38babab99c0b8bd26bafb3e4335" dependencies = [ "ahash", "arrow", @@ -2003,54 +1742,56 @@ dependencies = [ "arrow-ord", "arrow-schema", "arrow-string", - "base64 0.22.1", "chrono", "datafusion-common", - "datafusion-execution", "datafusion-expr", + "datafusion-expr-common", + "datafusion-functions-aggregate-common", "datafusion-physical-expr-common", "half", "hashbrown 0.14.5", - "hex", - "indexmap 2.4.0", - "itertools 0.12.1", + "indexmap", + "itertools 0.13.0", "log", "paste", "petgraph", - "regex", ] [[package]] name = "datafusion-physical-expr-common" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "db5e7d8532a1601cd916881db87a70b0a599900d23f3db2897d389032da53bc6" +checksum = "b8b7734d94bf2fa6f6e570935b0ddddd8421179ce200065be97874e13d46a47b" dependencies = [ "ahash", "arrow", "datafusion-common", - "datafusion-expr", + "datafusion-expr-common", "hashbrown 0.14.5", "rand", ] [[package]] name = "datafusion-physical-optimizer" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fdb9c78f308e050f5004671039786a925c3fee83b90004e9fcfd328d7febdcc0" +checksum = "7eee8c479522df21d7b395640dff88c5ed05361852dce6544d7c98e9dbcebffe" dependencies = [ + "arrow", + "arrow-schema", "datafusion-common", "datafusion-execution", + "datafusion-expr-common", "datafusion-physical-expr", "datafusion-physical-plan", + "itertools 0.13.0", ] [[package]] name = "datafusion-physical-plan" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8d1116949432eb2d30f6362707e2846d942e491052a206f2ddcb42d08aea1ffe" +checksum = "17e1fc2e2c239d14e8556f2622b19a726bf6bc6962cc00c71fc52626274bee24" dependencies = [ "ahash", "arrow", @@ -2064,14 +1805,15 @@ dependencies = [ "datafusion-common-runtime", "datafusion-execution", "datafusion-expr", - "datafusion-functions-aggregate", + "datafusion-functions-aggregate-common", + "datafusion-functions-window-common", "datafusion-physical-expr", "datafusion-physical-expr-common", "futures", "half", "hashbrown 0.14.5", - "indexmap 2.4.0", - "itertools 0.12.1", + "indexmap", + "itertools 0.13.0", "log", "once_cell", "parking_lot", @@ -2082,9 +1824,9 @@ dependencies = [ [[package]] name = "datafusion-proto" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cf1d25864c18178d0e51438648f5e0fa08417dbbc39b642c1752cbbb1013abf0" +checksum = "f730f7fc5a20134d4e5ecdf7bbf392002ac58163d58423ea28a702dc077b06e1" dependencies = [ "arrow", "chrono", @@ -2098,9 +1840,9 @@ dependencies = [ [[package]] name = "datafusion-proto-common" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "96a683253732334526b1cc5314a73a0f786803831f7e189ed3fe387ac50d7222" +checksum = "12c225fe49e4f943e35446b263613ada7a9e9f8d647544e6b07037b9803567df" dependencies = [ "arrow", "chrono", @@ -2111,15 +1853,16 @@ dependencies = [ [[package]] name = "datafusion-sql" -version = "41.0.0" +version = "43.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b45d0180711165fe94015d7c4123eb3e1cf5fb60b1506453200b8d1ce666bef0" +checksum = "63e3a4ed41dbee20a5d947a59ca035c225d67dc9cbe869c10f66dcdf25e7ce51" dependencies = [ "arrow", "arrow-array", "arrow-schema", "datafusion-common", "datafusion-expr", + "indexmap", "log", "regex", "sqlparser", @@ -2128,12 +1871,13 @@ dependencies = [ [[package]] name = "delta_kernel" -version = "0.3.0" +version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fa08a82239f51e6d3d249c38f0f5bf7c8a78b28587e1b466893c9eac84d252d8" +checksum = "2efadff110c892910f5b1b09a764845dd136f5dabdd802e64f2968586fbe19e6" dependencies = [ "arrow-arith", "arrow-array", + "arrow-buffer", "arrow-cast", "arrow-json", "arrow-ord", @@ -2142,18 +1886,20 @@ dependencies = [ "bytes", "chrono", "delta_kernel_derive", - "either", "fix-hidden-lifetime-bug", - "indexmap 2.4.0", + "futures", + "indexmap", "itertools 0.13.0", - "lazy_static", + "object_store", "parquet", + "reqwest", "roaring", "rustc_version", "serde", "serde_json", "strum 0.26.3", - "thiserror 1.0.63", + "thiserror 1.0.69", + "tokio", "tracing", "url", "uuid", @@ -2163,9 +1909,9 @@ dependencies = [ [[package]] name = "delta_kernel_derive" -version = "0.3.0" +version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6502fa0ba72fd1f782ccebba8f4c8b9a07c7591559e39d3d05b7ead94690a13f" +checksum = "49fe89c064f509a4a00c00c895af4b966e4b592e7ddf6a476eae856a9b883623" dependencies = [ "proc-macro2", "quote", @@ -2174,9 +1920,9 @@ dependencies = [ [[package]] name = "deltalake" -version = "0.19.0" +version = "0.22.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5c1fabe5673bf78a1eddc9979f25fac3999d4d239650ebf1850960f76a3bcd45" +checksum = "9e289d4760a09c95d44b978363b4466b0aacf7c82561e773f2f12eb5bbf257e9" dependencies = [ "deltalake-aws", "deltalake-core", @@ -2184,25 +1930,26 @@ dependencies = [ [[package]] name = "deltalake-aws" -version = "0.1.4" +version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8ae61c8427536aa2215b13109d10f4cc14ab036ad0bd3bb11ec7b54a4938f03f" +checksum = "7ed809d88a572dd0812aaae27b70edec133cb8ac8d1faa34731cd533c4fa662e" dependencies = [ "async-trait", - "aws-config 1.5.5", - "aws-credential-types 1.2.1", + "aws-config", + "aws-credential-types", "aws-sdk-dynamodb", - "aws-sdk-sts 1.39.0", + "aws-sdk-sts", "aws-smithy-runtime-api", - "backoff", + "backon", "bytes", + "chrono", "deltalake-core", "futures", "lazy_static", "maplit", "object_store", "regex", - "thiserror 1.0.63", + "thiserror 2.0.8", "tokio", "tracing", "url", @@ -2211,9 +1958,9 @@ dependencies = [ [[package]] name = "deltalake-core" -version = "0.19.0" +version = "0.22.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1f4c949a361bc458163233ab10dbe610c89912bdd0f42ccc7a4a25b4c1ec474c" +checksum = "e04f2ca590af391e0bcb683d7c24f72a60881dfd320809959ea0af9891b2f1e6" dependencies = [ "arrow", "arrow-arith", @@ -2237,6 +1984,7 @@ dependencies = [ "datafusion-functions", "datafusion-functions-aggregate", "datafusion-physical-expr", + "datafusion-physical-plan", "datafusion-proto", "datafusion-sql", "delta_kernel", @@ -2244,8 +1992,8 @@ dependencies = [ "errno", "fix-hidden-lifetime-bug", "futures", - "hashbrown 0.14.5", - "indexmap 2.4.0", + "hashbrown 0.15.2", + "indexmap", "itertools 0.13.0", "lazy_static", "libc", @@ -2265,7 +2013,7 @@ dependencies = [ "serde", "serde_json", "sqlparser", - "thiserror 1.0.63", + "thiserror 2.0.8", "tokio", "tracing", "url", @@ -2296,51 +2044,36 @@ dependencies = [ [[package]] name = "dirs" -version = "4.0.0" +version = "5.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ca3aa72a6f96ea37bbc5aa912f6788242832f75369bdfdadcb0e38423f100059" +checksum = "44c45a9d03d6676652bcb5e724c7e988de1acad23a711b5217ab9cbecbec2225" dependencies = [ "dirs-sys", ] -[[package]] -name = "dirs-next" -version = "2.0.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b98cf8ebf19c3d1b223e151f99a4f9f0690dca41414773390fc824184ac833e1" -dependencies = [ - "cfg-if", - "dirs-sys-next", -] - [[package]] name = "dirs-sys" -version = "0.3.7" +version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1b1d1d91c932ef41c0f2663aa8b0ca0342d444d842c06914aa0a7e352d0bada6" +checksum = "520f05a5cbd335fae5a99ff7a6ab8627577660ee5cfd6a94a6a929b52ff0321c" dependencies = [ "libc", + "option-ext", "redox_users", - "winapi", + "windows-sys 0.48.0", ] [[package]] -name = "dirs-sys-next" -version = "0.1.2" +name = "displaydoc" +version = "0.2.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4ebda144c4fe02d1f7ea1a7d9641b6fc6b580adcfa024ae48797ecdeb6825b4d" +checksum = "97369cbbc041bc366949bc74d34658d6cda5621039731c6310521892a3a20ae0" dependencies = [ - "libc", - "redox_users", - "winapi", + "proc-macro2", + "quote", + "syn 2.0.90", ] -[[package]] -name = "doc-comment" -version = "0.3.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fea41bba32d969b513997752735605054bc0dfa92b4c56bf1189f2e174be7a10" - [[package]] name = "educe" version = "0.6.0" @@ -2359,6 +2092,15 @@ version = "1.13.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "60b1af1c220855b6ceac025d3f6ecdd2b7c4894bfe9cd9bda4fbb4bc7c0d4cf0" +[[package]] +name = "encoding_rs" +version = "0.8.35" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "75030f3c4f45dafd7586dd6780965a8c7e8e285a5ecb86713e63a79c5b2766f3" +dependencies = [ + "cfg-if", +] + [[package]] name = "endian-type" version = "0.1.2" @@ -2385,17 +2127,27 @@ dependencies = [ "syn 2.0.90", ] +[[package]] +name = "env_filter" +version = "0.1.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "186e05a59d4c50738528153b83b0b0194d3a29507dfec16eccd4b342903397d0" +dependencies = [ + "log", + "regex", +] + [[package]] name = "env_logger" -version = "0.9.3" +version = "0.11.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a12e6657c4c97ebab115a42dcee77225f7f482cdd841cf7088c657a42e9e00e7" +checksum = "dcaee3d8e3cfc3fd92428d477bc97fc29ec8716d180c0d74c643bb26166660e0" dependencies = [ - "atty", + "anstream", + "anstyle", + "env_filter", "humantime", "log", - "regex", - "termcolor", ] [[package]] @@ -2415,28 +2167,24 @@ dependencies = [ "quote", "rustversion", "syn 1.0.109", - "synstructure", + "synstructure 0.12.6", ] [[package]] name = "errno" -version = "0.3.9" +version = "0.3.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "534c5cf6194dfab3db3242765c03bbe257cf92f22b38f6bc0c58d59108a820ba" +checksum = "33d852cb9b869c2a9b3df2f71a3074817f01e1844f839a144f5fcef059a4eb5d" dependencies = [ "libc", - "windows-sys 0.52.0", + "windows-sys 0.59.0", ] [[package]] name = "error-code" -version = "2.3.1" +version = "3.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "64f18991e7bf11e7ffee451b5318b5c1a73c52d0d0ada6e5a3017c8c1ced6a21" -dependencies = [ - "libc", - "str-buf", -] +checksum = "a5d9305ccc6942a704f4335694ecd3de2ea531b114ac2d51f5f843750787a92f" [[package]] name = "escape8259" @@ -2451,7 +2199,7 @@ dependencies = [ "arrow", "async-trait", "bytes", - "clap 4.5.22", + "clap", "criterion", "datafusion", "deltalake", @@ -2535,7 +2283,7 @@ dependencies = [ name = "exon-benchmarks" version = "0.32.3" dependencies = [ - "clap 4.5.22", + "clap", "datafusion", "exon", "tokio", @@ -2561,7 +2309,7 @@ name = "exon-cli" version = "0.32.3" dependencies = [ "async-trait", - "clap 4.5.22", + "clap", "datafusion", "datafusion-cli", "exon", @@ -2690,8 +2438,8 @@ name = "exon-io" version = "0.32.3" dependencies = [ "async-trait", - "aws-config 1.5.5", - "aws-credential-types 1.2.1", + "aws-config", + "aws-credential-types", "object_store", "tokio", "url", @@ -2761,28 +2509,19 @@ dependencies = [ [[package]] name = "fastrand" -version = "1.9.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e51093e27b0797c359783294ca4f0a911c270184cb10f85783b118614a1501be" -dependencies = [ - "instant", -] - -[[package]] -name = "fastrand" -version = "2.1.0" +version = "2.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9fc0510504f03c51ada170672ac806f1f105a88aa97a5281117e1ddc3368e51a" +checksum = "37909eebbb50d72f9059c3b6d82c0463f2ff062c9e95845c43a6c9c0355411be" [[package]] name = "fd-lock" -version = "3.0.13" +version = "4.0.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ef033ed5e9bad94e55838ca0ca906db0e043f517adda0c8b79c7a8c66c93c1b5" +checksum = "7e5768da2206272c81ef0b5e951a41862938a6070da63bcea197899942d3b947" dependencies = [ "cfg-if", "rustix", - "windows-sys 0.48.0", + "windows-sys 0.52.0", ] [[package]] @@ -2823,12 +2562,12 @@ dependencies = [ [[package]] name = "flate2" -version = "1.0.33" +version = "1.0.35" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "324a1be68054ef05ad64b861cc9eaf1d623d2d8cb25b4bf2cb9cdd902b4bf253" +checksum = "c936bfdafb507ebbf50b8074c54fa31c5be9a1e7e5f467dd659697041407d07c" dependencies = [ "crc32fast", - "miniz_oxide 0.8.0", + "miniz_oxide", ] [[package]] @@ -2837,6 +2576,27 @@ version = "1.0.7" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "3f9eec918d3f24069decb9af1554cad7c880e2da24a9afd88aca000531ab82c1" +[[package]] +name = "foldhash" +version = "0.1.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a0d2fde1f7b3d48b8395d5f2de76c18a528bd6a9cdde438df747bfcba3e05d6f" + +[[package]] +name = "foreign-types" +version = "0.3.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f6f339eb8adc052cd2ca78910fda869aefa38d22d5cb648e6485e4d3fc06f3b1" +dependencies = [ + "foreign-types-shared", +] + +[[package]] +name = "foreign-types-shared" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "00b0228411908ca8685dba7fc2cdd70ec9990a6e753e89b6ac91a84c40fbaf4b" + [[package]] name = "form_urlencoded" version = "1.2.1" @@ -2857,9 +2617,9 @@ dependencies = [ [[package]] name = "futures" -version = "0.3.30" +version = "0.3.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "645c6916888f6cb6350d2550b80fb63e734897a8498abe35cfb732b6487804b0" +checksum = "65bc07b1a8bc7c85c5f2e110c476c7389b4554ba72af57d8445ea63a576b0876" dependencies = [ "futures-channel", "futures-core", @@ -2872,9 +2632,9 @@ dependencies = [ [[package]] name = "futures-channel" -version = "0.3.30" +version = "0.3.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eac8f7d7865dcb88bd4373ab671c8cf4508703796caa2b1985a9ca867b3fcb78" +checksum = "2dff15bf788c671c1934e366d07e30c1814a8ef514e1af724a602e8a2fbe1b10" dependencies = [ "futures-core", "futures-sink", @@ -2882,15 +2642,15 @@ dependencies = [ [[package]] name = "futures-core" -version = "0.3.30" +version = "0.3.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dfc6580bb841c5a68e9ef15c77ccc837b40a7504914d52e47b8b0e9bbda25a1d" +checksum = "05f29059c0c2090612e8d742178b0580d2dc940c837851ad723096f87af6663e" [[package]] name = "futures-executor" -version = "0.3.30" +version = "0.3.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a576fc72ae164fca6b9db127eaa9a9dda0d61316034f33a0a0d4eda41f02b01d" +checksum = "1e28d1d997f585e54aebc3f97d39e72338912123a67330d723fdbb564d646c9f" dependencies = [ "futures-core", "futures-task", @@ -2900,15 +2660,15 @@ dependencies = [ [[package]] name = "futures-io" -version = "0.3.30" +version = "0.3.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a44623e20b9681a318efdd71c299b6b222ed6f231972bfe2f224ebad6311f0c1" +checksum = "9e5c1b78ca4aae1ac06c48a526a655760685149f0d465d21f37abfe57ce075c6" [[package]] name = "futures-macro" -version = "0.3.30" +version = "0.3.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "87750cf4b7a4c0625b1529e4c543c2182106e4dedc60a2a6455e00d212c489ac" +checksum = "162ee34ebcb7c64a8abebc059ce0fee27c2262618d7b60ed8faf72fef13c3650" dependencies = [ "proc-macro2", "quote", @@ -2917,21 +2677,21 @@ dependencies = [ [[package]] name = "futures-sink" -version = "0.3.30" +version = "0.3.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9fb8e00e87438d937621c1c6269e53f536c14d3fbd6a042bb24879e57d474fb5" +checksum = "e575fab7d1e0dcb8d0c7bcf9a63ee213816ab51902e6d244a95819acacf1d4f7" [[package]] name = "futures-task" -version = "0.3.30" +version = "0.3.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "38d84fa142264698cdce1a9f9172cf383a0c82de1bddcf3092901442c4097004" +checksum = "f90f7dce0722e95104fcb095585910c0977252f286e354b5e3bd38902cd99988" [[package]] name = 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"indexmap", "slab", "tokio", "tokio-util", @@ -3025,17 +2787,17 @@ dependencies = [ [[package]] name = "h2" -version = "0.4.5" +version = "0.4.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fa82e28a107a8cc405f0839610bdc9b15f1e25ec7d696aa5cf173edbcb1486ab" +checksum = "ccae279728d634d083c00f6099cb58f01cc99c145b84b8be2f6c74618d79922e" dependencies = [ "atomic-waker", "bytes", "fnv", "futures-core", "futures-sink", - "http 1.1.0", - "indexmap 2.4.0", + "http 1.2.0", + "indexmap", "slab", "tokio", "tokio-util", @@ -3055,18 +2817,23 @@ dependencies = [ [[package]] name = "hashbrown" -version = "0.12.3" +version = "0.14.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8a9ee70c43aaf417c914396645a0fa852624801b24ebb7ae78fe8272889ac888" +checksum = "e5274423e17b7c9fc20b6e7e208532f9b19825d82dfd615708b70edd83df41f1" +dependencies = [ + "ahash", + "allocator-api2", +] [[package]] name = "hashbrown" -version = "0.14.5" +version = 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"629ddff1a914a836fb245616a7888b62903aae58fa771e1d83943035efa0f978" dependencies = [ - "lexical-util 1.0.6", + "lexical-util", "static_assertions", ] [[package]] name = "libc" -version = "0.2.156" +version = "0.2.169" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a5f43f184355eefb8d17fc948dbecf6c13be3c141f20d834ae842193a448c72a" +checksum = "b5aba8db14291edd000dfcc4d620c7ebfb122c613afb886ca8803fa4e128a20a" [[package]] name = "libdeflate-sys" @@ -3639,9 +3453,9 @@ dependencies = [ [[package]] name = "libm" -version = "0.2.8" +version = "0.2.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4ec2a862134d2a7d32d7983ddcdd1c4923530833c9f2ea1a44fc5fa473989058" +checksum = "8355be11b20d696c8f18f6cc018c4e372165b1fa8126cef092399c9951984ffa" [[package]] name = "libmimalloc-sys" @@ -3671,7 +3485,7 @@ checksum = "5297962ef19edda4ce33aaa484386e0a5b3d7f2f4e037cbeee00503ef6b29d33" dependencies = [ "anstream", "anstyle", - "clap 4.5.22", + "clap", "escape8259", ] @@ -3681,6 +3495,12 @@ version = "0.4.14" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "78b3ae25bc7c8c38cec158d1f2757ee79e9b3740fbc7ccf0e59e4b08d793fa89" +[[package]] +name = "litemap" +version = "0.7.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4ee93343901ab17bd981295f2cf0026d4ad018c7c31ba84549a4ddbb47a45104" + [[package]] name = "lock_api" version = "0.4.12" @@ -3765,32 +3585,39 @@ checksum = "6877bb514081ee2a7ff5ef9de3281f14a4dd4bceac4c09388074a6b5df8a139a" [[package]] name = "miniz_oxide" -version = "0.7.4" +version = "0.8.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b8a240ddb74feaf34a79a7add65a741f3167852fba007066dcac1ca548d89c08" +checksum = "4ffbe83022cedc1d264172192511ae958937694cd57ce297164951b8b3568394" dependencies = [ - "adler", + "adler2", ] [[package]] -name = "miniz_oxide" -version = "0.8.0" +name = "mio" +version = "1.0.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e2d80299ef12ff69b16a84bb182e3b9df68b5a91574d3d4fa6e41b65deec4df1" +checksum = "2886843bf800fba2e3377cff24abf6379b4c4d5c6681eaf9ea5b0d15090450bd" dependencies = [ - "adler2", + "libc", + "wasi", + "windows-sys 0.52.0", ] [[package]] -name = "mio" -version = "1.0.2" +name = "native-tls" +version = "0.2.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "80e04d1dcff3aae0704555fe5fee3bcfaf3d1fdf8a7e521d5b9d2b42acb52cec" +checksum = "a8614eb2c83d59d1c8cc974dd3f920198647674a0a035e1af1fa58707e317466" dependencies = [ - "hermit-abi 0.3.9", "libc", - "wasi", - "windows-sys 0.52.0", + "log", + "openssl", + "openssl-probe", + "openssl-sys", + "schannel", + "security-framework 2.11.1", + "security-framework-sys", + "tempfile", ] [[package]] @@ -3810,12 +3637,13 @@ dependencies = [ [[package]] name = "nix" -version = "0.26.4" +version = "0.28.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "598beaf3cc6fdd9a5dfb1630c2800c7acd31df7aaf0f565796fba2b53ca1af1b" +checksum = "ab2156c4fce2f8df6c499cc1c763e4394b7482525bf2a9701c9d79d215f519e4" dependencies = [ - "bitflags 1.3.2", + "bitflags 2.6.0", "cfg-if", + "cfg_aliases 0.1.1", "libc", ] @@ -3860,7 +3688,7 @@ dependencies = [ "bstr", "byteorder", "futures", - "indexmap 2.4.0", + "indexmap", "memchr", "noodles-bgzf", "noodles-core", @@ -3877,7 +3705,7 @@ checksum = "7e0ab64aa6497c437aafa89663c4c4476afa0117495330a62847617ce0ce29fa" dependencies = [ "byteorder", "futures", - "indexmap 2.4.0", + "indexmap", "noodles-bgzf", "noodles-core", "noodles-csi", @@ -3892,7 +3720,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "13396d1aa63855efe5289b3711a191c007f08a89366ebe85acab2ae07883f8f7" dependencies = [ "bstr", - "lexical-core 1.0.5", + "lexical-core", "memchr", "noodles-core", ] @@ -3936,7 +3764,7 @@ dependencies = [ "bzip2", "flate2", "futures", - "indexmap 2.4.0", + "indexmap", "md-5", "noodles-bam", "noodles-core", @@ -3956,7 +3784,7 @@ dependencies = [ "bit-vec", "bstr", "byteorder", - "indexmap 2.4.0", + "indexmap", "noodles-bgzf", "noodles-core", "tokio", @@ -3995,7 +3823,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "108dfa5c377374ab61fd060ab9c08a99f118659218e83d5f71125b553d9b0d2b" dependencies = [ "futures", - "indexmap 2.4.0", + "indexmap", "noodles-bgzf", "noodles-core", "noodles-csi", @@ -4023,8 +3851,8 @@ dependencies = [ "bitflags 2.6.0", "bstr", "futures", - "indexmap 2.4.0", - "lexical-core 1.0.5", + "indexmap", + "lexical-core", "memchr", "noodles-bgzf", "noodles-core", @@ -4040,7 +3868,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "fde991a31c6203845117944c1d5f697b69c382e37eb2d70f3e3f2b575fbca62d" dependencies = [ "byteorder", - "indexmap 2.4.0", + "indexmap", "noodles-bgzf", "noodles-core", "noodles-csi", @@ -4054,7 +3882,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "70c72cbcfdfb14f0f76980dbe8f573f1bb7f9fa95eaa4780ee99aaa090c6d421" dependencies = [ "futures", - "indexmap 2.4.0", + "indexmap", "memchr", "noodles-bgzf", "noodles-core", @@ -4167,18 +3995,18 @@ dependencies = [ [[package]] name = "object" -version = "0.36.3" +version = "0.36.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "27b64972346851a39438c60b341ebc01bba47464ae329e55cf343eb93964efd9" +checksum = "62948e14d923ea95ea2c7c86c71013138b66525b86bdc08d2dcc262bdb497b87" dependencies = [ "memchr", ] [[package]] name = "object_store" -version = "0.10.2" +version = "0.11.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e6da452820c715ce78221e8202ccc599b4a52f3e1eb3eedb487b680c81a8e3f3" +checksum = "6eb4c22c6154a1e759d7099f9ffad7cc5ef8245f9efbab4a41b92623079c82f3" dependencies = [ "async-trait", "base64 0.22.1", @@ -4186,7 +4014,7 @@ dependencies = [ "chrono", "futures", "humantime", - "hyper 1.4.1", + "hyper 1.5.2", "itertools 0.13.0", "md-5", "parking_lot", @@ -4194,8 +4022,8 @@ dependencies = [ "quick-xml", "rand", "reqwest", - "ring 0.17.8", - "rustls-pemfile 2.1.3", + "ring", + "rustls-pemfile 2.2.0", "serde", "serde_json", "snafu", @@ -4207,9 +4035,9 @@ dependencies = [ [[package]] name = "once_cell" -version = "1.19.0" +version = "1.20.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3fdb12b2476b595f9358c5161aa467c2438859caa136dec86c26fdd2efe17b92" +checksum = "1261fe7e33c73b354eab43b1273a57c8f967d0391e80353e51f764ac02cf6775" [[package]] name = "oorandom" @@ -4217,12 +4045,56 @@ version = "11.1.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b410bbe7e14ab526a0e86877eb47c6996a2bd7746f027ba551028c925390e4e9" +[[package]] +name = "openssl" +version = "0.10.68" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "6174bc48f102d208783c2c84bf931bb75927a617866870de8a4ea85597f871f5" +dependencies = [ + "bitflags 2.6.0", + "cfg-if", + "foreign-types", + "libc", + "once_cell", + "openssl-macros", + "openssl-sys", +] + +[[package]] +name = "openssl-macros" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a948666b637a0f465e8564c73e89d4dde00d72d4d473cc972f390fc3dcee7d9c" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.90", +] + [[package]] name = "openssl-probe" version = "0.1.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ff011a302c396a5197692431fc1948019154afc178baf7d8e37367442a4601cf" +[[package]] +name = "openssl-sys" +version = "0.9.104" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "45abf306cbf99debc8195b66b7346498d7b10c210de50418b5ccd7ceba08c741" +dependencies = [ + "cc", + "libc", + "pkg-config", + "vcpkg", +] + +[[package]] +name = "option-ext" +version = "0.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "04744f49eae99ab78e0d5c0b603ab218f515ea8cfe5a456d7629ad883a3b6e7d" + [[package]] name = "ordered-float" version = "2.10.1" @@ -4232,12 +4104,6 @@ dependencies = [ "num-traits", ] -[[package]] -name = "os_str_bytes" -version = "6.6.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e2355d85b9a3786f481747ced0e0ff2ba35213a1f9bd406ed906554d7af805a1" - [[package]] name = "outref" version = "0.5.1" @@ -4252,9 +4118,9 @@ checksum = "b15813163c1d831bf4a13c3610c05c0d03b39feb07f7e09fa234dac9b15aaf39" [[package]] name = "owo-colors" -version = "4.0.0" +version = "4.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "caff54706df99d2a78a5a4e3455ff45448d81ef1bb63c22cd14052ca0e993a3f" +checksum = "fb37767f6569cd834a413442455e0f066d0d522de8630436e2a1761d9726ba56" [[package]] name = "parking_lot" @@ -4281,9 +4147,9 @@ dependencies = [ [[package]] name = "parquet" -version = "52.2.0" +version = "53.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e977b9066b4d3b03555c22bdc442f3fadebd96a39111249113087d0edb2691cd" +checksum = "2b449890367085eb65d7d3321540abc3d7babbd179ce31df0016e90719114191" dependencies = [ "ahash", "arrow-array", @@ -4300,7 +4166,7 @@ dependencies = [ "flate2", "futures", "half", - "hashbrown 0.14.5", + "hashbrown 0.15.2", "lz4_flex", "num", "num-bigint", @@ -4343,7 +4209,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b4c5cc86750666a3ed20bdaf5ca2a0344f9c67674cae0515bec2da16fbaa47db" dependencies = [ "fixedbitset", - "indexmap 2.4.0", + "indexmap", ] [[package]] @@ -4405,18 +4271,18 @@ dependencies = [ [[package]] name = "pin-project" -version = "1.1.5" +version = "1.1.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b6bf43b791c5b9e34c3d182969b4abb522f9343702850a2e57f460d00d09b4b3" +checksum = "be57f64e946e500c8ee36ef6331845d40a93055567ec57e8fae13efd33759b95" dependencies = [ "pin-project-internal", ] [[package]] name = "pin-project-internal" -version = "1.1.5" +version = "1.1.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2f38a4412a78282e09a2cf38d195ea5420d15ba0602cb375210efbc877243965" +checksum = "3c0f5fad0874fc7abcd4d750e76917eaebbecaa2c20bde22e1dbeeba8beb758c" dependencies = [ "proc-macro2", "quote", @@ -4425,9 +4291,9 @@ dependencies = [ [[package]] name = "pin-project-lite" -version = "0.2.14" +version = "0.2.15" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bda66fc9667c18cb2758a2ac84d1167245054bcf85d5d1aaa6923f45801bdd02" +checksum = "915a1e146535de9163f3987b8944ed8cf49a18bb0056bcebcdcece385cece4ff" [[package]] name = "pin-utils" @@ -4437,15 +4303,15 @@ checksum = "8b870d8c151b6f2fb93e84a13146138f05d02ed11c7e7c54f8826aaaf7c9f184" [[package]] name = "pkg-config" -version = "0.3.30" +version = "0.3.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d231b230927b5e4ad203db57bbcbee2802f6bce620b1e4a9024a07d94e2907ec" +checksum = "953ec861398dccce10c670dfeaf3ec4911ca479e9c02154b3a215178c5f566f2" [[package]] name = "plotters" -version = "0.3.6" +version = "0.3.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a15b6eccb8484002195a3e44fe65a4ce8e93a625797a063735536fd59cb01cf3" +checksum = "5aeb6f403d7a4911efb1e33402027fc44f29b5bf6def3effcc22d7bb75f2b747" dependencies = [ "num-traits", "plotters-backend", @@ -4456,15 +4322,15 @@ dependencies = [ [[package]] name = "plotters-backend" -version = "0.3.6" +version = "0.3.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "414cec62c6634ae900ea1c56128dfe87cf63e7caece0852ec76aba307cebadb7" +checksum = "df42e13c12958a16b3f7f4386b9ab1f3e7933914ecea48da7139435263a4172a" [[package]] name = "plotters-svg" -version = "0.3.6" +version = "0.3.7" source = 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"itertools 0.12.1", + "itertools 0.13.0", "proc-macro2", "quote", "syn 2.0.90", @@ -4548,15 +4414,15 @@ dependencies = [ [[package]] name = "quad-rand" -version = "0.2.1" +version = "0.2.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "658fa1faf7a4cc5f057c9ee5ef560f717ad9d8dc66d975267f709624d6e1ab88" +checksum = "5a651516ddc9168ebd67b24afd085a718be02f8858fe406591b013d101ce2f40" [[package]] name = "quick-xml" -version = "0.36.1" +version = "0.36.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "96a05e2e8efddfa51a84ca47cec303fac86c8541b686d37cac5efc0e094417bc" +checksum = "f7649a7b4df05aed9ea7ec6f628c67c9953a43869b8bc50929569b2999d443fe" dependencies = [ "memchr", "serde", @@ -4565,57 +4431,61 @@ dependencies = [ [[package]] name = "quinn" -version = "0.11.3" +version = "0.11.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b22d8e7369034b9a7132bc2008cac12f2013c8132b45e0554e6e20e2617f2156" 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[[package]] name = "rustversion" -version = "1.0.17" +version = "1.0.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "955d28af4278de8121b7ebeb796b6a45735dc01436d898801014aced2773a3d6" +checksum = "0e819f2bc632f285be6d7cd36e25940d45b2391dd6d9b939e79de557f7014248" [[package]] name = "rustyline" -version = "11.0.0" +version = "14.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5dfc8644681285d1fb67a467fb3021bfea306b99b4146b166a1fe3ada965eece" +checksum = "7803e8936da37efd9b6d4478277f4b2b9bb5cdb37a113e8d63222e58da647e63" dependencies = [ - "bitflags 1.3.2", + "bitflags 2.6.0", "cfg-if", "clipboard-win", - "dirs-next", "fd-lock", + "home", "libc", "log", "memchr", "nix", "radix_trie", - "scopeguard", "unicode-segmentation", - "unicode-width", + "unicode-width 0.1.14", "utf8parse", - "winapi", + "windows-sys 0.52.0", ] [[package]] @@ -5030,11 +4878,11 @@ dependencies = [ [[package]] name = "schannel" -version = "0.1.23" 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"quote", - "syn 1.0.109", + "syn 2.0.90", ] [[package]] @@ -5233,20 +5093,14 @@ checksum = "1b6b67fb9a61334225b5b790716f609cd58395f895b3fe8b328786812a40bc3b" [[package]] name = "socket2" -version = "0.5.7" +version = "0.5.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ce305eb0b4296696835b71df73eb912e0f1ffd2556a501fcede6e0c50349191c" +checksum = "c970269d99b64e60ec3bd6ad27270092a5394c4e309314b18ae3fe575695fbe8" dependencies = [ "libc", "windows-sys 0.52.0", ] -[[package]] -name = "spin" -version = "0.5.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6e63cff320ae2c57904679ba7cb63280a3dc4613885beafb148ee7bf9aa9042d" - [[package]] name = "spin" version = "0.9.8" @@ -5273,15 +5127,15 @@ dependencies = [ "similar", "subst", "tempfile", - "thiserror 2.0.7", + "thiserror 2.0.8", "tracing", ] [[package]] name = "sqlparser" -version = "0.49.0" +version = "0.51.0" source = "registry+https://github.com/rust-lang/crates.io-index" 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"futures-core", +] [[package]] name = "synstructure" @@ -5446,56 +5297,73 @@ dependencies = [ ] [[package]] -name = "tempfile" -version = "3.12.0" +name = "synstructure" +version = "0.13.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "04cbcdd0c794ebb0d4cf35e88edd2f7d2c4c3e9a5a6dab322839b321c6a87a64" +checksum = "c8af7666ab7b6390ab78131fb5b0fce11d6b7a6951602017c35fa82800708971" dependencies = [ - "cfg-if", - "fastrand 2.1.0", - "once_cell", - "rustix", - "windows-sys 0.59.0", + "proc-macro2", + "quote", + "syn 2.0.90", ] [[package]] -name = "termcolor" -version = "1.4.1" +name = "system-configuration" +version = "0.6.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "06794f8f6c5c898b3275aebefa6b8a1cb24cd2c6c79397ab15774837a0bc5755" +checksum = "3c879d448e9d986b661742763247d3693ed13609438cf3d006f51f5368a5ba6b" dependencies = [ - "winapi-util", + "bitflags 2.6.0", + "core-foundation 0.9.4", + "system-configuration-sys", +] + 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"thiserror-impl 1.0.63", + "thiserror-impl 1.0.69", ] [[package]] name = "thiserror" -version = "2.0.7" +version = "2.0.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "93605438cbd668185516ab499d589afb7ee1859ea3d5fc8f6b0755e1c7443767" +checksum = "08f5383f3e0071702bf93ab5ee99b52d26936be9dedd9413067cbdcddcb6141a" dependencies = [ - "thiserror-impl 2.0.7", + "thiserror-impl 2.0.8", ] [[package]] name = "thiserror-impl" -version = "1.0.63" +version = "1.0.69" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a4558b58466b9ad7ca0f102865eccc95938dca1a74a856f2b57b6629050da261" +checksum = "4fee6c4efc90059e10f81e6d42c60a18f76588c3d74cb83a0b242a2b6c7504c1" dependencies = [ "proc-macro2", "quote", @@ -5504,9 +5372,9 @@ dependencies = [ [[package]] name = "thiserror-impl" -version = "2.0.7" +version = "2.0.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e1d8749b4531af2117677a5fcd12b1348a3fe2b81e36e61ffeac5c4aa3273e36" +checksum = "f2f357fcec90b3caef6623a099691be676d033b40a058ac95d2a6ade6fa0c943" dependencies = [ "proc-macro2", "quote", @@ -5536,9 +5404,9 @@ dependencies = [ [[package]] name = "time" -version = "0.3.36" +version = "0.3.37" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5dfd88e563464686c916c7e46e623e520ddc6d79fa6641390f2e3fa86e83e885" +checksum = "35e7868883861bd0e56d9ac6efcaaca0d6d5d82a2a7ec8209ff492c07cf37b21" dependencies = [ "deranged", "num-conv", @@ -5556,9 +5424,9 @@ checksum = "ef927ca75afb808a4d64dd374f00a2adf8d0fcff8e7b184af886c3c87ec4a3f3" [[package]] name = "time-macros" -version = "0.2.18" +version = "0.2.19" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3f252a68540fde3a3877aeea552b832b40ab9a69e318efd078774a01ddee1ccf" +checksum = "2834e6017e3e5e4b9834939793b282bc03b37a3336245fa820e35e233e2a85de" dependencies = [ "num-conv", "time-core", @@ -5573,6 +5441,16 @@ dependencies = [ "crunchy", ] +[[package]] +name = "tinystr" +version = "0.7.6" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9117f5d4db391c1cf6927e7bea3db74b9a1c1add8f7eda9ffd5364f40f57b82f" +dependencies = [ + "displaydoc", + "zerovec", +] + [[package]] name = "tinytemplate" version = "1.2.1" @@ -5585,9 +5463,9 @@ dependencies = [ [[package]] name = "tinyvec" -version = "1.8.0" +version = "1.8.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "445e881f4f6d382d5f27c034e25eb92edd7c784ceab92a0937db7f2e9471b938" +checksum = "022db8904dfa342efe721985167e9fcd16c29b226db4397ed752a761cfce81e8" dependencies = [ "tinyvec_macros", ] @@ -5600,9 +5478,9 @@ checksum = "1f3ccbac311fea05f86f61904b462b55fb3df8837a366dfc601a0161d0532f20" [[package]] name = "tokio" -version = "1.40.0" +version = "1.42.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e2b070231665d27ad9ec9b8df639893f46727666c6767db40317fbe920a5d998" +checksum = "5cec9b21b0450273377fc97bd4c33a8acffc8c996c987a7c5b319a0083707551" dependencies = [ "backtrace", "bytes", @@ -5628,14 +5506,13 @@ dependencies = [ ] [[package]] -name = "tokio-rustls" -version = "0.23.4" +name = "tokio-native-tls" +version = "0.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c43ee83903113e03984cb9e5cebe6c04a5116269e900e3ddba8f068a62adda59" +checksum = "bbae76ab933c85776efabc971569dd6119c580d8f5d448769dec1764bf796ef2" dependencies = [ - "rustls 0.20.9", + "native-tls", "tokio", - "webpki", ] [[package]] @@ -5650,23 +5527,11 @@ dependencies = [ [[package]] name = "tokio-rustls" -version = "0.26.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0c7bc40d0e5a97695bb96e27995cd3a08538541b0a846f65bba7a359f36700d4" -dependencies = [ - "rustls 0.23.12", - "rustls-pki-types", - "tokio", -] - -[[package]] -name = "tokio-stream" -version = "0.1.15" +version = "0.26.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "267ac89e0bec6e691e5813911606935d77c476ff49024f98abcea3e7b15e37af" +checksum = "5f6d0975eaace0cf0fcadee4e4aaa5da15b5c079146f2cffb67c113be122bf37" dependencies = [ - "futures-core", - "pin-project-lite", + "rustls 0.23.20", "tokio", ] @@ -5684,28 +5549,6 @@ dependencies = [ "tokio", ] -[[package]] -name = "tower" -version = "0.4.13" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b8fa9be0de6cf49e536ce1851f987bd21a43b771b09473c3549a6c853db37c1c" -dependencies = [ - "futures-core", - "futures-util", - "pin-project", - "pin-project-lite", - "tokio", - "tower-layer", - "tower-service", - "tracing", -] - -[[package]] -name = "tower-layer" -version = "0.3.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "121c2a6cda46980bb0fcd1647ffaf6cd3fc79a013de288782836f6df9c48780e" - [[package]] name = "tower-service" version = "0.3.3" @@ -5714,9 +5557,9 @@ checksum = "8df9b6e13f2d32c91b9bd719c00d1958837bc7dec474d94952798cc8e69eeec3" [[package]] name = "tracing" -version = "0.1.40" +version = "0.1.41" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c3523ab5a71916ccf420eebdf5521fcef02141234bbc0b8a49f2fdc4544364ef" +checksum = "784e0ac535deb450455cbfa28a6f0df145ea1bb7ae51b821cf5e7927fdcfbdd0" dependencies = [ "log", "pin-project-lite", @@ -5726,9 +5569,9 @@ dependencies = [ [[package]] name = "tracing-attributes" -version = "0.1.27" +version = "0.1.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "34704c8d6ebcbc939824180af020566b01a7c01f80641264eba0999f6c2b6be7" +checksum = "395ae124c09f9e6918a2310af6038fba074bcf474ac352496d5910dd59a2226d" dependencies = [ "proc-macro2", "quote", @@ -5737,9 +5580,9 @@ dependencies = [ [[package]] name = "tracing-core" -version = "0.1.32" +version = "0.1.33" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c06d3da6113f116aaee68e4d601191614c9053067f9ab7f6edbcb161237daa54" +checksum = "e672c95779cf947c5311f83787af4fa8fffd12fb27e4993211a84bdfd9610f9c" dependencies = [ "once_cell", "valuable", @@ -5758,9 +5601,9 @@ dependencies = [ [[package]] name = "tracing-subscriber" -version = "0.3.18" +version = "0.3.19" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ad0f048c97dbd9faa9b7df56362b8ebcaa52adb06b498c050d2f4e32f90a7a8b" +checksum = "e8189decb5ac0fa7bc8b96b7cb9b2701d60d48805aca84a238004d665fcc4008" dependencies = [ "matchers", "nu-ansi-term", @@ -5843,50 +5686,35 @@ version = "0.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e87a2ed6b42ec5e28cc3b94c09982969e9227600b2e3dcbc1db927a84c06bd69" -[[package]] -name = "unicode-bidi" -version = "0.3.15" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "08f95100a766bf4f8f28f90d77e0a5461bbdb219042e7679bebe79004fed8d75" - [[package]] name = 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"registry+https://github.com/rust-lang/crates.io-index" -checksum = "22784dbdf76fdde8af1aeda5622b546b422b6fc585325248a2bf9f5e41e94d6c" +checksum = "32f8b686cadd1473f4bd0117a5d28d36b1ade384ea9b5069a1c40aefed7fda60" dependencies = [ "form_urlencoded", "idna", @@ -5911,6 +5739,18 @@ version = "2.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "daf8dba3b7eb870caf1ddeed7bc9d2a049f3cfdfae7cb521b087cc33ae4c49da" +[[package]] +name = "utf16_iter" +version = "1.0.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c8232dd3cdaed5356e0f716d285e4b40b932ac434100fe9b7e0e8e935b9e6246" + +[[package]] +name = "utf8_iter" +version = "1.0.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b6c140620e7ffbb22c2dee59cafe6084a59b5ffc27a8859a5f0d494b5d52b6be" + [[package]] name = "utf8parse" version = "0.2.2" @@ -5919,9 +5759,9 @@ checksum = "06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821" [[package]] name = "uuid" -version = "1.10.0" +version = "1.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "81dfa00651efa65069b0b6b651f4aaa31ba9e3c3ce0137aaad053604ee7e0314" +checksum = "f8c5f0a0af699448548ad1a2fbf920fb4bee257eae39953ba95cb84891a0446a" dependencies = [ "getrandom", "serde", @@ -5933,6 +5773,12 @@ version = "0.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "830b7e5d4d90034032940e4ace0d9a9a057e7a45cd94e6c007832e39edb82f6d" +[[package]] +name = "vcpkg" +version = "0.2.15" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "accd4ea62f7bb7a82fe23066fb0957d48ef677f6eeb8215f372f52e48bb32426" + [[package]] name = "version_check" version = "0.1.5" @@ -5989,9 +5835,9 @@ checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423" [[package]] name = "wasm-bindgen" -version = "0.2.93" +version = "0.2.99" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a82edfc16a6c469f5f44dc7b571814045d60404b55a0ee849f9bcfa2e63dd9b5" +checksum = "a474f6281d1d70c17ae7aa6a613c87fce69a127e2624002df63dcb39d6cf6396" dependencies = [ "cfg-if", "once_cell", @@ -6000,13 +5846,12 @@ dependencies = [ [[package]] name = "wasm-bindgen-backend" -version = "0.2.93" +version = "0.2.99" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9de396da306523044d3302746f1208fa71d7532227f15e347e2d93e4145dd77b" +checksum = "5f89bb38646b4f81674e8f5c3fb81b562be1fd936d84320f3264486418519c79" dependencies = [ "bumpalo", "log", - "once_cell", "proc-macro2", "quote", "syn 2.0.90", @@ -6015,21 +5860,22 @@ dependencies = [ [[package]] name = "wasm-bindgen-futures" -version = "0.4.43" +version = "0.4.49" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "61e9300f63a621e96ed275155c108eb6f843b6a26d053f122ab69724559dc8ed" +checksum = "38176d9b44ea84e9184eff0bc34cc167ed044f816accfe5922e54d84cf48eca2" dependencies = [ "cfg-if", "js-sys", + "once_cell", "wasm-bindgen", "web-sys", ] [[package]] name = "wasm-bindgen-macro" -version = "0.2.93" +version = "0.2.99" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "585c4c91a46b072c92e908d99cb1dcdf95c5218eeb6f3bf1efa991ee7a68cccf" +checksum = "2cc6181fd9a7492eef6fef1f33961e3695e4579b9872a6f7c83aee556666d4fe" dependencies = [ "quote", "wasm-bindgen-macro-support", @@ -6037,9 +5883,9 @@ dependencies = [ [[package]] name = "wasm-bindgen-macro-support" -version = "0.2.93" +version = "0.2.99" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "afc340c74d9005395cf9dd098506f7f44e38f2b4a21c6aaacf9a105ea5e1e836" +checksum = "30d7a95b763d3c45903ed6c81f156801839e5ee968bb07e534c44df0fcd330c2" dependencies = [ "proc-macro2", "quote", @@ -6050,15 +5896,15 @@ dependencies = [ [[package]] name = "wasm-bindgen-shared" -version = "0.2.93" +version = "0.2.99" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c62a0a307cb4a311d3a07867860911ca130c3494e8c2719593806c08bc5d0484" +checksum = "943aab3fdaaa029a6e0271b35ea10b72b943135afe9bffca82384098ad0e06a6" [[package]] name = "wasm-streams" -version = "0.4.0" +version = "0.4.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b65dc4c90b63b118468cf747d8bf3566c1913ef60be765b5730ead9e0a3ba129" +checksum = "15053d8d85c7eccdbefef60f06769760a563c7f0a9d6902a13d35c7800b0ad65" dependencies = [ "futures-util", "js-sys", @@ -6069,9 +5915,19 @@ dependencies = [ [[package]] name = "web-sys" -version = "0.3.70" +version = "0.3.76" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "04dd7223427d52553d3702c004d3b2fe07c148165faa56313cb00211e31c12bc" +dependencies = [ + "js-sys", + "wasm-bindgen", +] + +[[package]] +name = "web-time" +version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "26fdeaafd9bd129f65e7c031593c24d62186301e0c72c8978fa1678be7d532c0" +checksum = "5a6580f308b1fad9207618087a65c04e7a10bc77e02c8e84e9b00dd4b12fa0bb" dependencies = [ "js-sys", "wasm-bindgen", @@ -6083,8 +5939,8 @@ version = "0.22.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ed63aea5ce73d0ff405984102c42de94fc55a6b75765d621c65262469b3c9b53" dependencies = [ - "ring 0.17.8", - "untrusted 0.9.0", + "ring", + "untrusted", ] [[package]] @@ -6127,6 +5983,36 @@ dependencies = [ "windows-targets 0.52.6", ] +[[package]] +name = "windows-registry" +version = "0.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e400001bb720a623c1c69032f8e3e4cf09984deec740f007dd2b03ec864804b0" +dependencies = [ + "windows-result", + "windows-strings", + "windows-targets 0.52.6", +] + +[[package]] +name = "windows-result" +version = "0.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1d1043d8214f791817bab27572aaa8af63732e11bf84aa21a45a78d6c317ae0e" +dependencies = [ + "windows-targets 0.52.6", +] + +[[package]] +name = "windows-strings" +version = "0.1.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4cd9b125c486025df0eabcb585e62173c6c9eddcec5d117d3b6e8c30e2ee4d10" +dependencies = [ + "windows-result", + "windows-targets 0.52.6", +] + [[package]] name = "windows-sys" version = "0.48.0" @@ -6276,14 +6162,16 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec" [[package]] -name = "winreg" -version = "0.52.0" +name = "write16" +version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a277a57398d4bfa075df44f501a17cfdf8542d224f0d36095a2adc7aee4ef0a5" -dependencies = [ - "cfg-if", - "windows-sys 0.48.0", -] +checksum = "d1890f4022759daae28ed4fe62859b1236caebfc61ede2f63ed4e695f3f6d936" + +[[package]] +name = "writeable" +version = "0.5.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1e9df38ee2d2c3c5948ea468a8406ff0db0b29ae1ffde1bcf20ef305bcc95c51" [[package]] name = "xmlparser" @@ -6300,6 +6188,30 @@ dependencies = [ "lzma-sys", ] +[[package]] +name = "yoke" +version = "0.7.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "120e6aef9aa629e3d4f52dc8cc43a015c7724194c97dfaf45180d2daf2b77f40" +dependencies = [ + "serde", + "stable_deref_trait", + "yoke-derive", + "zerofrom", +] + +[[package]] +name = "yoke-derive" +version = "0.7.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2380878cad4ac9aac1e2435f3eb4020e8374b5f13c296cb75b4620ff8e229154" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.90", + "synstructure 0.13.1", +] + [[package]] name = "z85" version = "3.0.5" @@ -6327,12 +6239,55 @@ dependencies = [ "syn 2.0.90", ] +[[package]] +name = "zerofrom" +version = "0.1.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "cff3ee08c995dee1859d998dea82f7374f2826091dd9cd47def953cae446cd2e" +dependencies = [ + "zerofrom-derive", +] + +[[package]] +name = "zerofrom-derive" +version = "0.1.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "595eed982f7d355beb85837f651fa22e90b3c044842dc7f2c2842c086f295808" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.90", + "synstructure 0.13.1", +] + [[package]] name = "zeroize" version = "1.8.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ced3678a2879b30306d323f4542626697a464a97c0a07c9aebf7ebca65cd4dde" +[[package]] +name = "zerovec" +version = "0.10.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "aa2b893d79df23bfb12d5461018d408ea19dfafe76c2c7ef6d4eba614f8ff079" +dependencies = [ + "yoke", + "zerofrom", + "zerovec-derive", +] + +[[package]] +name = "zerovec-derive" +version = "0.10.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "6eafa6dfb17584ea3e2bd6e76e0cc15ad7af12b09abdd1ca55961bed9b1063c6" +dependencies = [ + "proc-macro2", + "quote", + "syn 2.0.90", +] + [[package]] name = "zstd" version = "0.12.4" @@ -6372,9 +6327,9 @@ dependencies = [ [[package]] name = "zstd-sys" -version = "2.0.12+zstd.1.5.6" +version = "2.0.13+zstd.1.5.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0a4e40c320c3cb459d9a9ff6de98cff88f4751ee9275d140e2be94a2b74e4c13" +checksum = "38ff0f21cfee8f97d94cef41359e0c89aa6113028ab0291aa8ca0038995a95aa" dependencies = [ "cc", "pkg-config", diff --git a/Cargo.toml b/Cargo.toml index 48d67119..6c66e983 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -35,12 +35,12 @@ members = [ resolver = "2" [workspace.dependencies] -arrow = { version = "52.2.0" } +arrow = { version = "53.3.0" } async-trait = "0.1.82" -datafusion = { version = "41", features = ["compression", "parquet"] } +datafusion = { version = "43", features = ["compression", "parquet"] } futures = "0.3" noodles = { version = "0.86" } -object_store = { version = "0.10.2" } +object_store = { version = "0.11.0" } tokio = { version = "1", features = ["io-util"] } tokio-util = { version = "0.7.13", features = ["compat"] } url = { version = "2.5.2" } diff --git a/exon/exon-cli/Cargo.toml b/exon/exon-cli/Cargo.toml index e86669f5..e0b3028e 100644 --- a/exon/exon-cli/Cargo.toml +++ b/exon/exon-cli/Cargo.toml @@ -10,7 +10,7 @@ version.workspace = true # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html [dependencies] -datafusion-cli = { version = "41" } +datafusion-cli = { version = "43" } clap = { version = "4", features = ["derive", "cargo"] } datafusion = { workspace = true } object_store = { workspace = true } diff --git a/exon/exon-cli/src/main.rs b/exon/exon-cli/src/main.rs index a4318866..c9b98ce6 100644 --- a/exon/exon-cli/src/main.rs +++ b/exon/exon-cli/src/main.rs @@ -77,7 +77,7 @@ impl CliSessionContext for ExonCLISession { #[derive(Debug, Parser, PartialEq)] struct Args { - #[arg(value_enum, long, default_value = "Table")] + #[arg(value_enum, long, default_value = "table")] format: PrintFormat, #[clap( @@ -89,7 +89,7 @@ struct Args { #[clap( long, - help = "The max number of rows to display for 'Table' format\n[default: 40] [possible values: numbers(0/10/...), inf(no limit)]", + help = "The max number of rows to display for 'table' format\n[default: 40] [possible values: numbers(0/10/...), inf(no limit)]", default_value = "40" )] maxrows: MaxRows, diff --git a/exon/exon-core/Cargo.toml b/exon/exon-core/Cargo.toml index 187ae3be..8106f41c 100644 --- a/exon/exon-core/Cargo.toml +++ b/exon/exon-core/Cargo.toml @@ -27,7 +27,7 @@ exon-fcs = { path = "../exon-fcs", version = "0.32.3", optional = true } exon-genbank = { path = "../exon-genbank", version = "0.32.3", optional = true } exon-gff = { path = "../exon-gff", version = "0.32.3" } exon-gtf = { path = "../exon-gtf", version = "0.32.3" } -deltalake = { version = "0.19.0", features = [ +deltalake = { version = "0.22.3", features = [ "datafusion", "deltalake-aws", "s3", diff --git a/exon/exon-core/benches/reverse_complement.rs b/exon/exon-core/benches/reverse_complement.rs index 6cc5ab0f..6b15d7dc 100644 --- a/exon/exon-core/benches/reverse_complement.rs +++ b/exon/exon-core/benches/reverse_complement.rs @@ -40,7 +40,8 @@ fn generate_dna_sequences(num_sequences: usize) -> Vec { fn bench_reverse_complement(c: &mut Criterion) { let mut group = c.benchmark_group("reverse_complement"); - let sequences = generate_dna_sequences(500); + let size = 500; + let sequences = generate_dna_sequences(size); let sequence_array = Arc::new(StringArray::from(sequences)); let sequence_column = ColumnarValue::Array(sequence_array.clone()); @@ -51,7 +52,7 @@ fn bench_reverse_complement(c: &mut Criterion) { &sequence_column, |b, s| { b.iter(|| { - rc.invoke(&[s.clone()]).unwrap(); + rc.invoke_batch(&[s.clone()], size).unwrap(); }); }, ); diff --git a/exon/exon-core/src/datasources/bam/udtf.rs b/exon/exon-core/src/datasources/bam/udtf.rs index 677c9cd5..7914a746 100644 --- a/exon/exon-core/src/datasources/bam/udtf.rs +++ b/exon/exon-core/src/datasources/bam/udtf.rs @@ -12,7 +12,7 @@ // See the License for the specific language governing permissions and // limitations under the License. -use std::sync::Arc; +use std::{fmt::Debug, sync::Arc}; use crate::{ config::extract_config_from_state, @@ -37,6 +37,12 @@ pub struct BAMScanFunction { ctx: SessionContext, } +impl Debug for BAMScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("BAMScanFunction").finish() + } +} + impl BAMScanFunction { /// Create a new `BAMScanFunction`. pub fn new(ctx: SessionContext) -> Self { @@ -82,6 +88,12 @@ pub struct BAMIndexedScanFunction { ctx: SessionContext, } +impl Debug for BAMIndexedScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("BAMIndexedScanFunction").finish() + } +} + impl BAMIndexedScanFunction { /// Create a new `BAMIndexedScanFunction`. pub fn new(ctx: SessionContext) -> Self { diff --git a/exon/exon-core/src/datasources/bcf/udtf.rs b/exon/exon-core/src/datasources/bcf/udtf.rs index 7199e225..460643b1 100644 --- a/exon/exon-core/src/datasources/bcf/udtf.rs +++ b/exon/exon-core/src/datasources/bcf/udtf.rs @@ -31,6 +31,12 @@ pub struct BCFScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for BCFScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("BCFScanFunction").finish() + } +} + impl BCFScanFunction { /// Create a new BCF scan function. pub fn new(ctx: SessionContext) -> Self { diff --git a/exon/exon-core/src/datasources/bed/udtf.rs b/exon/exon-core/src/datasources/bed/udtf.rs index 4bf1e74a..60668dd4 100644 --- a/exon/exon-core/src/datasources/bed/udtf.rs +++ b/exon/exon-core/src/datasources/bed/udtf.rs @@ -33,6 +33,12 @@ pub struct BEDScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for BEDScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("BEDScanFunction").finish() + } +} + impl BEDScanFunction { /// Create a new `BEDScanFunction`. pub fn new(ctx: SessionContext) -> Self { diff --git a/exon/exon-core/src/datasources/cram/udtf.rs b/exon/exon-core/src/datasources/cram/udtf.rs index 7c44f739..0f1c70df 100644 --- a/exon/exon-core/src/datasources/cram/udtf.rs +++ b/exon/exon-core/src/datasources/cram/udtf.rs @@ -33,6 +33,12 @@ pub struct CRAMScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for CRAMScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("CRAMScanFunction").finish() + } +} + impl CRAMScanFunction { /// Create a new `CRAMScanFunction`. pub fn _new(ctx: SessionContext) -> Self { diff --git a/exon/exon-core/src/datasources/exon_listing_table_options.rs b/exon/exon-core/src/datasources/exon_listing_table_options.rs index c8291006..0b1d4256 100644 --- a/exon/exon-core/src/datasources/exon_listing_table_options.rs +++ b/exon/exon-core/src/datasources/exon_listing_table_options.rs @@ -12,7 +12,7 @@ // See the License for the specific language governing permissions and // limitations under the License. -use std::{str::FromStr, sync::Arc}; +use std::{fmt::Debug, str::FromStr, sync::Arc}; use arrow::datatypes::Field; use async_trait::async_trait; @@ -36,7 +36,7 @@ use crate::{ #[async_trait] /// Options for listing a table -pub trait ExonListingOptions: Default + Send + Sync { +pub trait ExonListingOptions: Default + Send + Sync + Debug { /// The partition columns for the table fn table_partition_cols(&self) -> &[Field]; diff --git a/exon/exon-core/src/datasources/fasta/udtfs/fasta_indexed_scan.rs b/exon/exon-core/src/datasources/fasta/udtfs/fasta_indexed_scan.rs index 8971dea8..e490b965 100644 --- a/exon/exon-core/src/datasources/fasta/udtfs/fasta_indexed_scan.rs +++ b/exon/exon-core/src/datasources/fasta/udtfs/fasta_indexed_scan.rs @@ -43,6 +43,12 @@ pub struct FastaIndexedScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for FastaIndexedScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("FastaIndexedScanFunction").finish() + } +} + impl FastaIndexedScanFunction { /// Create a new `FastaIndexedScanFunction`. pub fn new(ctx: SessionContext) -> Self { diff --git a/exon/exon-core/src/datasources/fasta/udtfs/fasta_scan.rs b/exon/exon-core/src/datasources/fasta/udtfs/fasta_scan.rs index c3d3add9..4d2842d2 100644 --- a/exon/exon-core/src/datasources/fasta/udtfs/fasta_scan.rs +++ b/exon/exon-core/src/datasources/fasta/udtfs/fasta_scan.rs @@ -36,6 +36,12 @@ pub struct FastaScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for FastaScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("FastaScanFunction").finish() + } +} + impl FastaScanFunction { /// Create a new `FastaScanFunction`. pub fn new(ctx: SessionContext) -> Self { diff --git a/exon/exon-core/src/datasources/fastq/udtf.rs b/exon/exon-core/src/datasources/fastq/udtf.rs index f7c7b4c1..6c394513 100644 --- a/exon/exon-core/src/datasources/fastq/udtf.rs +++ b/exon/exon-core/src/datasources/fastq/udtf.rs @@ -34,6 +34,12 @@ pub struct FastqScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for FastqScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("FastqScanFunction").finish() + } +} + impl FastqScanFunction { /// Create a new `FastqScanFunction`. pub fn new(ctx: SessionContext) -> Self { diff --git a/exon/exon-core/src/datasources/fcs/udtf.rs b/exon/exon-core/src/datasources/fcs/udtf.rs index 8ef93049..f2e77d11 100644 --- a/exon/exon-core/src/datasources/fcs/udtf.rs +++ b/exon/exon-core/src/datasources/fcs/udtf.rs @@ -30,6 +30,12 @@ pub struct FCSScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for FCSScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("FCSScanFunction").finish() + } +} + impl FCSScanFunction { /// Create a new FCS scan function. pub fn new(ctx: SessionContext) -> Self { diff --git a/exon/exon-core/src/datasources/genbank/udtf.rs b/exon/exon-core/src/datasources/genbank/udtf.rs index 62a33a50..ddcd3a75 100644 --- a/exon/exon-core/src/datasources/genbank/udtf.rs +++ b/exon/exon-core/src/datasources/genbank/udtf.rs @@ -33,6 +33,12 @@ pub struct GenbankScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for GenbankScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("GenbankScanFunction").finish() + } +} + impl GenbankScanFunction { /// Create a new `GenbankScanFunction`. pub fn new(ctx: SessionContext) -> Self { diff --git a/exon/exon-core/src/datasources/gff/udtf.rs b/exon/exon-core/src/datasources/gff/udtf.rs index cbaf307f..b496cd47 100644 --- a/exon/exon-core/src/datasources/gff/udtf.rs +++ b/exon/exon-core/src/datasources/gff/udtf.rs @@ -38,6 +38,12 @@ pub struct GFFScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for GFFScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("GFFScanFunction").finish() + } +} + impl GFFScanFunction { /// Create a new `GFFScanFunction`. pub fn new(ctx: SessionContext) -> Self { @@ -78,6 +84,12 @@ pub struct GFFIndexedScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for GFFIndexedScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("GFFIndexedScanFunction").finish() + } +} + impl GFFIndexedScanFunction { /// Create a new `GFFIndexedScanFunction`. pub fn new(ctx: SessionContext) -> Self { diff --git a/exon/exon-core/src/datasources/gtf/udtf.rs b/exon/exon-core/src/datasources/gtf/udtf.rs index db71e9f2..dc8c7f47 100644 --- a/exon/exon-core/src/datasources/gtf/udtf.rs +++ b/exon/exon-core/src/datasources/gtf/udtf.rs @@ -33,6 +33,12 @@ pub struct GTFScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for GTFScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("GTFScanFunction").finish() + } +} + impl GTFScanFunction { /// Create a new `GTFScanFunction`. pub fn new(ctx: SessionContext) -> Self { diff --git a/exon/exon-core/src/datasources/mzml/udtf.rs b/exon/exon-core/src/datasources/mzml/udtf.rs index 5cae2d2b..252ed0c4 100644 --- a/exon/exon-core/src/datasources/mzml/udtf.rs +++ b/exon/exon-core/src/datasources/mzml/udtf.rs @@ -32,6 +32,12 @@ pub struct MzMLScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for MzMLScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("MzMLScanFunction").finish() + } +} + impl MzMLScanFunction { /// Create a new `MzMLScanFunction`. pub fn new(ctx: SessionContext) -> Self { diff --git a/exon/exon-core/src/datasources/sam/udtf.rs b/exon/exon-core/src/datasources/sam/udtf.rs index c46e93f5..98d692b7 100644 --- a/exon/exon-core/src/datasources/sam/udtf.rs +++ b/exon/exon-core/src/datasources/sam/udtf.rs @@ -32,6 +32,12 @@ pub struct SAMScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for SAMScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("SAMScanFunction").finish() + } +} + impl SAMScanFunction { /// Create a new `SAMScanFunction`. pub fn new(ctx: SessionContext) -> Self { diff --git a/exon/exon-core/src/datasources/vcf/udtf.rs b/exon/exon-core/src/datasources/vcf/udtf.rs index 4d60ac09..c5ef8d61 100644 --- a/exon/exon-core/src/datasources/vcf/udtf.rs +++ b/exon/exon-core/src/datasources/vcf/udtf.rs @@ -38,6 +38,12 @@ pub struct VCFScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for VCFScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("VCFScanFunction").finish() + } +} + impl VCFScanFunction { /// Create a new VCF scan function. pub fn new(ctx: SessionContext) -> Self { @@ -81,6 +87,12 @@ pub struct VCFIndexedScanFunction { ctx: SessionContext, } +impl std::fmt::Debug for VCFIndexedScanFunction { + fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { + f.debug_struct("VCFIndexedScanFunction").finish() + } +} + impl VCFIndexedScanFunction { /// Create a new VCF scan function. pub fn new(ctx: SessionContext) -> Self { diff --git a/exon/exon-core/src/logical_plan/exon_data_sink_node.rs b/exon/exon-core/src/logical_plan/exon_data_sink_node.rs index 164ba7d5..322489c7 100644 --- a/exon/exon-core/src/logical_plan/exon_data_sink_node.rs +++ b/exon/exon-core/src/logical_plan/exon_data_sink_node.rs @@ -96,6 +96,12 @@ impl From for ExonDataSinkLogicalPlanNode { } } +impl PartialOrd for ExonDataSinkLogicalPlanNode { + fn partial_cmp(&self, _other: &Self) -> Option { + None + } +} + impl DfExtensionNode for ExonDataSinkLogicalPlanNode {} impl Hash for ExonDataSinkLogicalPlanNode { diff --git a/exon/exon-core/src/physical_plan/file_scan_config_builder.rs b/exon/exon-core/src/physical_plan/file_scan_config_builder.rs index 80fbb1c0..cd535937 100644 --- a/exon/exon-core/src/physical_plan/file_scan_config_builder.rs +++ b/exon/exon-core/src/physical_plan/file_scan_config_builder.rs @@ -18,7 +18,7 @@ use arrow::datatypes::{Field, SchemaRef}; use datafusion::{ datasource::{listing::PartitionedFile, physical_plan::FileScanConfig}, execution::object_store::ObjectStoreUrl, - physical_expr::PhysicalSortExpr, + physical_expr::LexOrdering, physical_plan::Statistics, }; @@ -30,7 +30,7 @@ pub struct FileScanConfigBuilder { statistics: Statistics, projection: Option>, limit: Option, - output_ordering: Vec>, + output_ordering: Vec, table_partition_cols: Vec, } diff --git a/exon/exon-core/src/physical_plan/planner/exon_extension_planner.rs b/exon/exon-core/src/physical_plan/planner/exon_extension_planner.rs index 88fdb276..8ae4fe20 100644 --- a/exon/exon-core/src/physical_plan/planner/exon_extension_planner.rs +++ b/exon/exon-core/src/physical_plan/planner/exon_extension_planner.rs @@ -21,7 +21,7 @@ use datafusion::{ physical_plan::FileSinkConfig, DefaultTableSource, }, execution::context::SessionState, - logical_expr::{LogicalPlan, LogicalPlanBuilder, UserDefinedLogicalNode}, + logical_expr::{dml::InsertOp, LogicalPlan, LogicalPlanBuilder, UserDefinedLogicalNode}, physical_plan::{insert::DataSinkExec, ExecutionPlan}, physical_planner::{ExtensionPlanner, PhysicalPlanner}, sql::{ @@ -165,7 +165,7 @@ impl ExtensionPlanner for ExomeExtensionPlanner { table_paths: vec![], output_schema: Arc::clone(&schema), table_partition_cols: vec![], - overwrite: false, + insert_op: InsertOp::Append, keep_partition_by_columns: false, }; diff --git a/exon/exon-core/src/session_context/exon_context_ext.rs b/exon/exon-core/src/session_context/exon_context_ext.rs index 83cd8764..8438d31d 100644 --- a/exon/exon-core/src/session_context/exon_context_ext.rs +++ b/exon/exon-core/src/session_context/exon_context_ext.rs @@ -832,7 +832,7 @@ mod tests { let temp_path = temp_dir.join("test.fasta"); let sql = format!( - "COPY (SELECT * FROM test_fasta) TO '{}' STORED AS FASTA", + "COPY (SELECT id, description, sequence FROM test_fasta) TO '{}' STORED AS FASTA", temp_path.display() ); ctx.sql(&sql).await?.collect().await?; diff --git a/exon/exon-core/src/sinks/simple_record_sink.rs b/exon/exon-core/src/sinks/simple_record_sink.rs index ed4b9060..11979a9a 100644 --- a/exon/exon-core/src/sinks/simple_record_sink.rs +++ b/exon/exon-core/src/sinks/simple_record_sink.rs @@ -132,6 +132,7 @@ mod tests { use datafusion::datasource::listing::PartitionedFile; use datafusion::datasource::physical_plan::FileSinkConfig; use datafusion::execution::object_store::ObjectStoreUrl; + use datafusion::logical_expr::dml::InsertOp; use datafusion::physical_plan::insert::DataSink; #[tokio::test] @@ -160,7 +161,7 @@ mod tests { table_paths: vec![], output_schema, table_partition_cols: vec![], - overwrite: false, + insert_op: InsertOp::Append, keep_partition_by_columns: false, }; diff --git a/exon/exon-core/tests/sqllogictests/slt/fasta-copy-tests.slt b/exon/exon-core/tests/sqllogictests/slt/fasta-copy-tests.slt index 2dade2d6..fc6b656e 100644 --- a/exon/exon-core/tests/sqllogictests/slt/fasta-copy-tests.slt +++ b/exon/exon-core/tests/sqllogictests/slt/fasta-copy-tests.slt @@ -15,7 +15,7 @@ SELECT * FROM fasta_table WHERE id = 'a'; a description ATCG statement ok -COPY (SELECT * FROM fasta_table) TO '${__TEST_DIR__}test.fasta' STORED AS FASTA; +COPY (SELECT id, description, sequence FROM fasta_table) TO '${__TEST_DIR__}test.fasta' STORED AS FASTA; query I SELECT * FROM fasta_scan('${__TEST_DIR__}test.fasta'); diff --git a/exon/exon-core/tests/sqllogictests/slt/fastq-copy-tests.slt b/exon/exon-core/tests/sqllogictests/slt/fastq-copy-tests.slt index f297b622..388563d2 100644 --- a/exon/exon-core/tests/sqllogictests/slt/fastq-copy-tests.slt +++ b/exon/exon-core/tests/sqllogictests/slt/fastq-copy-tests.slt @@ -4,7 +4,7 @@ statement ok CREATE EXTERNAL TABLE fastq_table STORED AS FASTQ LOCATION '$CARGO_MANIFEST_DIR/test-data/datasources/fastq/test.fastq'; statement ok -COPY (SELECT * FROM fastq_table) TO '${__TEST_DIR__}test.fastq' STORED AS FASTQ; +COPY (SELECT name, description, quality_scores, sequence FROM fastq_table) TO '${__TEST_DIR__}test.fastq' STORED AS FASTQ; query I SELECT COUNT(*) FROM fastq_scan('${__TEST_DIR__}test.fastq');