pyproject.toml

[build-system]

requires = ["setuptools",
            "setuptools_scm",
            "wheel"]

build-backend = 'setuptools.build_meta'

[tool.codespell]
skip = "*.fts,*.fits,venv,*.pro,*.asdf"

[tool.ruff]
target-version = "py39"
line-length = 110
exclude=[
    ".git,",
    "__pycache__",
    "build",
    "mocksipipeline/version.py",
]
show-fixes = true
show-source = true

select = [
       "E",
       "F",
       "W",
       "UP",
       "PT",
       #"RET",
       #"TID",

]
extend-ignore = [
    # pycodestyle (E, W)
    "E501",  # LineTooLong                             # TODO! fix

    # pytest (PT)
    "PT001",  # Always use pytest.fixture()
    "PT004",  # Fixtures which don't return anything should have leading _
    "PT007",  # Parametrize should be lists of tuples  # TODO! fix
    "PT011",  # Too broad exception assert             # TODO! fix
    "PT023",  # Always use () on pytest decorators
]

[tool.ruff.per-file-ignores]
# Part of configuration, not a package.
"setup.py" = ["INP001"]
"conftest.py" = ["INP001"]
# implicit-namespace-package. The examples are not a package.
"docs/*.py" = ["INP001"]
# Module level imports do not need to be at the top of a file here
"docs/conf.py" = ["E402"]

"__init__.py" = ["E402", "F401", "F403"]
"test_*.py" = ["B011", "D", "E402", "PGH001", "S101"]

# Snakemake variables show up as undefined names
"pipeline/workflow/scripts/*.py" = ["F821"]

# Need an import to register a Fido client, but import not explicitly used
"pipeline/workflow/scripts/download_data.py" = ["F401"]


[tool.ruff.pydocstyle]
convention = "numpy"