diff --git a/ch_tools/chadmin/cli/object_storage_group.py b/ch_tools/chadmin/cli/object_storage_group.py
index 8a15b4d1..d5e42553 100644
--- a/ch_tools/chadmin/cli/object_storage_group.py
+++ b/ch_tools/chadmin/cli/object_storage_group.py
@@ -1,52 +1,30 @@
-import contextlib
-import json
import logging
-import sys
from datetime import datetime, timedelta, timezone
-from gzip import GzipFile
-from io import TextIOWrapper
-from pathlib import Path
-from typing import BinaryIO, Dict, List, Optional, Union
+from typing import List, Optional
import click
from click import Context, group, option, pass_context
+from ch_tools.chadmin.cli import get_clickhouse_config
from ch_tools.chadmin.internal.object_storage import (
- ObjectSummary,
- S3DiskConfiguration,
- S3ObjectLocalMetaData,
cleanup_s3_object_storage,
- collect_metadata,
s3_object_storage_iterator,
)
+from ch_tools.chadmin.internal.utils import execute_query
from ch_tools.common.cli.parameters import TimeSpanParamType
+from ch_tools.common.clickhouse.config.storage_configuration import S3DiskConfiguration
-STORAGE_POLICY_CONFIG_PATH = Path("/etc/clickhouse-server/config.d/storage_policy.xml")
# The guard interval is used for S3 objects for which metadata is not found.
# And for metadata for which object is not found in S3.
# These objects are not counted if their last modified time fall in the interval from the moment of starting analyzing.
DEFAULT_GUARD_INTERVAL = "24h"
-
-
-def get_disk_metadata_paths(disk_name: str) -> List[Path]:
- return [
- Path(f"/var/lib/clickhouse/disks/{disk_name}/store"), # Atomic database engine
- Path(f"/var/lib/clickhouse/disks/{disk_name}/data"), # Ordinary database engine
- Path(f"/var/lib/clickhouse/disks/{disk_name}/shadow"), # Backups
- ]
+# Prefix for a listing table name
+LISTING_TABLE_PREFIX = "listing_objects_from_"
+# Batch size for inserts in a listing table
+INSERT_BATCH_SIZE = 1000
@group("object-storage")
-@option(
- "-c",
- "--config",
- "config_path",
- type=click.Path(
- exists=True, file_okay=True, dir_okay=False, readable=True, path_type=Path
- ),
- default=STORAGE_POLICY_CONFIG_PATH,
- help="ClickHouse storage policy config.",
-)
@option(
"-d",
"--disk",
@@ -55,60 +33,25 @@ def get_disk_metadata_paths(disk_name: str) -> List[Path]:
help="S3 disk name.",
)
@pass_context
-def object_storage_group(ctx: Context, config_path: Path, disk_name: str) -> None:
+def object_storage_group(ctx: Context, disk_name: str) -> None:
"""Commands to manage S3 objects and their metadata."""
-
# Restrict excessive boto logging
_set_boto_log_level(logging.WARNING)
- ctx.obj["disk_configuration"] = S3DiskConfiguration.from_config(
- config_path, disk_name
- )
+ ch_config = get_clickhouse_config(ctx)
+ ctx.obj[
+ "disk_configuration"
+ ] = ch_config.storage_configuration.s3_disk_configuaration(disk_name)
-@object_storage_group.command("list")
-@option(
- "-o",
- "--orphaned",
- "orphaned",
- is_flag=True,
- default=False,
- help="List objects that are not referenced in the metadata.",
-)
+@object_storage_group.command("clean")
@option(
"-p",
- "--object-name-prefix",
+ "--prefix",
+ "--object_name_prefix",
"object_name_prefix",
default="",
- help="Additional prefix of object name using for listing.",
-)
-@option(
- "-l",
- "--limit",
- "limit",
- type=int,
- help="Return at most this many objects.",
-)
-@option(
- "-f",
- "--dump-file",
- "dump_file",
- type=click.Path(path_type=Path),
- help="Dump result to the file instead of STDOUT.",
-)
-@option(
- "-c",
- "--compressed",
- "compressed",
- is_flag=True,
- help="Compress an output using GZIP format.",
-)
-@option(
- "-q",
- "--quiet",
- "quiet",
- is_flag=True,
- help="Output only newline delimited object keys.",
+ help="Additional prefix of object name used while listing bucket.",
)
@option(
"--from-time",
@@ -129,119 +72,123 @@ def object_storage_group(ctx: Context, config_path: Path, disk_name: str) -> Non
type=TimeSpanParamType(),
help=("End of inspecting interval in human-friendly format."),
)
+@option(
+ "--on-cluster",
+ "on_cluster",
+ is_flag=True,
+ help=("List objects on all hosts in a cluster."),
+)
+@option(
+ "--cluster",
+ "cluster_name",
+ default="{cluster}",
+ help=("Cluster to be cleaned. Default value is macro."),
+)
+@option(
+ "--dry-run",
+ "dry_run",
+ is_flag=True,
+ help=("Do not delete objects. Show only statistics."),
+)
+@option(
+ "--keep-paths",
+ "keep_paths",
+ is_flag=True,
+ help=("Do not delete collected paths of objects from object storage."),
+)
@pass_context
-def list_objects(
+def clean_object_storage(
ctx: Context,
- orphaned: bool,
object_name_prefix: str,
- dump_file: Optional[Path],
- compressed: bool,
- quiet: bool,
from_time: Optional[timedelta],
to_time: timedelta,
- limit: Optional[int],
+ on_cluster: bool,
+ cluster_name: str,
+ dry_run: bool,
+ keep_paths: bool,
) -> None:
"""
- List S3 objects.
+ Clean orphaned S3 objects.
"""
- if from_time is not None and from_time <= to_time:
+ if from_time is not None and to_time <= from_time:
raise click.BadParameter(
- "from_time parameter must be greater than to_time",
+ "'to_time' parameter must be greater than 'from_time'",
param_hint="--from-time",
)
disk_conf: S3DiskConfiguration = ctx.obj["disk_configuration"]
now = datetime.now(timezone.utc)
- counter = 0
-
- with dump_writer(compressed, dump_file) as writer:
- object_key_to_metadata = collect_metadata(
- get_disk_metadata_paths(disk_conf.name)
+ remote_data_paths_table = "system.remote_data_paths"
+ if on_cluster:
+ remote_data_paths_table = (
+ f"clusterAllReplicas('{cluster_name}', {remote_data_paths_table})"
)
- for name, obj in s3_object_storage_iterator(
- disk_conf, object_name_prefix=object_name_prefix
- ):
- if limit is not None and counter >= limit:
- break
-
- metadata = object_key_to_metadata.get(name)
-
- if obj.last_modified > now - to_time:
- continue
- if from_time is not None and obj.last_modified < now - from_time:
- continue
-
- if orphaned and metadata:
- continue
- if not orphaned and not metadata:
- continue
-
- writer.write(_get_dump_line(obj, metadata, quiet))
- counter += 1
+ listing_table = LISTING_TABLE_PREFIX + disk_conf.name
+ # Create listing table for storing paths from object storage
+ execute_query(
+ ctx,
+ f"CREATE TABLE IF NOT EXISTS {listing_table} (obj_path String) ENGINE MergeTree ORDER BY obj_path",
+ )
-@object_storage_group.command("clean")
-@option(
- "--prefix",
- "prefix",
- help="Prefix path to delete objects. If not empty it has more priority than other options.",
-)
-@option(
- "-f",
- "--file",
- "file",
- type=click.File("rb"),
- help="File containing S3 object keys delimited by newlines.",
- default=sys.stdin.buffer,
- show_default="STDIN",
-)
-@option(
- "-c",
- "--compressed",
- "compressed",
- is_flag=True,
- help="Input stream is compressed using GZIP format.",
-)
-@pass_context
-def clean_object_storage(ctx, prefix, file, compressed):
- """
- Clean up needless S3 objects.
+ obj_paths_batch = []
+ counter = 0
+ for _, obj in s3_object_storage_iterator(
+ disk_conf, object_name_prefix=object_name_prefix
+ ):
+ if obj.last_modified > now - to_time:
+ continue
+ if from_time is not None and obj.last_modified < now - from_time:
+ continue
+
+ obj_paths_batch.append(obj.key)
+ counter += 1
+ if len(obj_paths_batch) >= INSERT_BATCH_SIZE:
+ _insert_listing_batch(ctx, obj_paths_batch, listing_table)
+ obj_paths_batch.clear()
+
+ # Insert last batch (might be shorter)
+ if obj_paths_batch:
+ _insert_listing_batch(ctx, obj_paths_batch, listing_table)
+
+ antijoin_query = f"""
+ SELECT obj_path FROM {listing_table} AS object_storage
+ LEFT ANTI JOIN {remote_data_paths_table} AS object_table
+ ON object_table.remote_path = object_storage.obj_path
+ AND object_table.disk_name = '{disk_conf.name}'
"""
- disk_conf: S3DiskConfiguration = ctx.obj["disk_configuration"]
-
- if compressed:
- file = GzipFile(fileobj=file)
- file = TextIOWrapper(file)
-
- if prefix:
- file = (
- obj.key
- for _, obj in s3_object_storage_iterator(
- disk_conf, path_prefix=prefix, skip_ignoring=True
- )
- )
-
- lines_stripped = (
- line.rstrip() for line in file
- ) # lazily iterate over file stripping newline
- deleted = cleanup_s3_object_storage(disk_conf, lines_stripped)
-
- click.echo(f"Deleted {deleted} objects from bucket [{disk_conf.bucket_name}]")
+ logging.info("Antijoin query: %s", antijoin_query)
+
+ deleted = 0
+ with execute_query(
+ ctx, antijoin_query, stream=True, format_="TabSeparated"
+ ) as resp:
+ # make generator for lazy iterating
+ paths_to_delete = (line.decode() for line in resp.iter_lines())
+ if dry_run:
+ # just count items
+ deleted = sum(1 for _ in paths_to_delete)
+ else:
+ deleted = cleanup_s3_object_storage(disk_conf, paths_to_delete)
+
+ if not keep_paths:
+ execute_query(ctx, f"TRUNCATE {listing_table}", format_=None)
+
+ click.echo(
+ f"{'Would delete' if dry_run else 'Deleted'} {deleted} objects from bucket [{disk_conf.bucket_name}]"
+ )
-@contextlib.contextmanager
-def dump_writer(compressed, file_path=None):
- out_file = open(file_path, "wb") if file_path is not None else sys.stdout.buffer
- writer: Union[GzipFile, BinaryIO] = (
- GzipFile(mode="wb", fileobj=out_file) if compressed else out_file
+def _insert_listing_batch(
+ ctx: Context, obj_paths_batch: List[str], listing_table: str
+) -> None:
+ batch_values = ",".join(f"('{obj_path}')" for obj_path in obj_paths_batch)
+ execute_query(
+ ctx,
+ f"INSERT INTO {listing_table} (obj_path) VALUES {batch_values}",
+ format_=None,
)
- try:
- yield writer
- finally:
- writer.flush()
- if file_path is not None or compressed:
- writer.close()
def _set_boto_log_level(level: int) -> None:
@@ -250,25 +197,3 @@ def _set_boto_log_level(level: int) -> None:
logging.getLogger("nose").setLevel(level)
logging.getLogger("s3transfer").setLevel(level)
logging.getLogger("urllib3").setLevel(level)
-
-
-def _get_dump_line(
- obj: ObjectSummary,
- metadata_files: Optional[Dict[Path, S3ObjectLocalMetaData]],
- quiet: bool,
-) -> bytes:
- if quiet:
- res = obj.key
- else:
- res = json.dumps(
- {
- "object": {
- "key": obj.key,
- "size": obj.size,
- "last_modified": str(obj.last_modified),
- },
- "files": list(metadata_files) if metadata_files else [],
- },
- default=str,
- )
- return f"{res}\n".encode()
diff --git a/ch_tools/chadmin/internal/diagnostics/formatter.py b/ch_tools/chadmin/internal/diagnostics/formatter.py
index b18e248d..2b89d50e 100644
--- a/ch_tools/chadmin/internal/diagnostics/formatter.py
+++ b/ch_tools/chadmin/internal/diagnostics/formatter.py
@@ -19,7 +19,7 @@ def format_storage(dbaas_config, ch_config):
disk_size = format_size(dbaas_config.disk_size, binary=True)
storage = f"{disk_size} {disk_type}"
- if ch_config.has_disk("object_storage"):
+ if ch_config.storage_configuration.has_disk("object_storage"):
storage += " + S3"
return storage
diff --git a/ch_tools/chadmin/internal/object_storage/__init__.py b/ch_tools/chadmin/internal/object_storage/__init__.py
index 4dd0bcc8..22969a8f 100644
--- a/ch_tools/chadmin/internal/object_storage/__init__.py
+++ b/ch_tools/chadmin/internal/object_storage/__init__.py
@@ -1,10 +1,6 @@
-from ch_tools.chadmin.internal.object_storage.collect_metadata import collect_metadata
from ch_tools.chadmin.internal.object_storage.s3_cleanup import (
cleanup_s3_object_storage,
)
-from ch_tools.chadmin.internal.object_storage.s3_disk_configuration import (
- S3DiskConfiguration,
-)
from ch_tools.chadmin.internal.object_storage.s3_iterator import (
ObjectSummary,
s3_object_storage_iterator,
diff --git a/ch_tools/chadmin/internal/object_storage/collect_metadata.py b/ch_tools/chadmin/internal/object_storage/collect_metadata.py
deleted file mode 100644
index 2e51094a..00000000
--- a/ch_tools/chadmin/internal/object_storage/collect_metadata.py
+++ /dev/null
@@ -1,48 +0,0 @@
-import logging
-import os
-from collections import defaultdict
-from pathlib import Path
-from typing import Dict, Iterable
-
-from ch_tools.chadmin.internal.object_storage.s3_local_metadata import (
- S3ObjectLocalMetaData,
-)
-
-IGNORED_FILENAMES = ["frozen_metadata.txt", "revision.txt"]
-
-ObjectKeyToMetadata = Dict[str, Dict[Path, S3ObjectLocalMetaData]]
-
-
-def collect_metadata(paths: Iterable[Path]) -> ObjectKeyToMetadata:
- """
- Return dictionary of parsed metadata from local disk with access by S3 object key.
- """
- logging.debug("Metadata collecting for paths: %s", str(paths))
- res: ObjectKeyToMetadata = defaultdict(dict)
-
- for top_dir in paths:
- if not top_dir.exists():
- logging.debug("Metadata top_dir `%s` is not exist", top_dir)
- continue
-
- for dirpath, _dirnames, filenames in os.walk(str(top_dir)):
- for filename in filenames:
- if filename in IGNORED_FILENAMES:
- continue
-
- file_path = Path(dirpath) / filename
- try:
- metadata = S3ObjectLocalMetaData.from_file(file_path)
- except Exception as error:
- logging.debug(
- "Skip error occurred while reading metadata from `%s`: %s",
- file_path,
- repr(error),
- )
- continue
-
- for obj in metadata.objects:
- res[obj.key][file_path] = metadata
-
- logging.debug("Metadata collected")
- return res
diff --git a/ch_tools/chadmin/internal/object_storage/s3_cleanup.py b/ch_tools/chadmin/internal/object_storage/s3_cleanup.py
index d8bd4a51..362e09fa 100644
--- a/ch_tools/chadmin/internal/object_storage/s3_cleanup.py
+++ b/ch_tools/chadmin/internal/object_storage/s3_cleanup.py
@@ -3,10 +3,8 @@
import boto3
from botocore.client import Config # type: ignore[import]
-from ch_tools.chadmin.internal.object_storage.s3_disk_configuration import (
- S3DiskConfiguration,
-)
from ch_tools.chadmin.internal.utils import chunked
+from ch_tools.common.clickhouse.config.storage_configuration import S3DiskConfiguration
BULK_DELETE_CHUNK_SIZE = 1000
@@ -17,7 +15,7 @@ def cleanup_s3_object_storage(disk: S3DiskConfiguration, keys: Iterator[str]) ->
endpoint_url=disk.endpoint_url,
aws_access_key_id=disk.access_key_id,
aws_secret_access_key=disk.secret_access_key,
- config=Config(s3={"addressing_style": "virtual"}),
+ config=Config(s3={"addressing_style": "auto"}),
)
bucket = s3.Bucket(disk.bucket_name)
deleted = 0
diff --git a/ch_tools/chadmin/internal/object_storage/s3_iterator.py b/ch_tools/chadmin/internal/object_storage/s3_iterator.py
index a81a200d..53dde89f 100644
--- a/ch_tools/chadmin/internal/object_storage/s3_iterator.py
+++ b/ch_tools/chadmin/internal/object_storage/s3_iterator.py
@@ -1,11 +1,9 @@
from typing import Any, Iterator, Optional, Tuple
import boto3 # type: ignore[import]
-from botocore.client import Config # type: ignore[import]
+from botocore.client import Config
-from ch_tools.chadmin.internal.object_storage.s3_disk_configuration import (
- S3DiskConfiguration,
-)
+from ch_tools.common.clickhouse.config.storage_configuration import S3DiskConfiguration
ObjectSummary = Any
IGNORED_OBJECT_NAME_PREFIXES = ["operations", ".SCHEMA_VERSION"]
@@ -23,7 +21,7 @@ def s3_object_storage_iterator(
endpoint_url=disk.endpoint_url,
aws_access_key_id=disk.access_key_id,
aws_secret_access_key=disk.secret_access_key,
- config=Config(s3={"addressing_style": "virtual"}),
+ config=Config(s3={"addressing_style": "auto"}),
)
bucket = s3.Bucket(disk.bucket_name)
diff --git a/ch_tools/chadmin/internal/utils.py b/ch_tools/chadmin/internal/utils.py
index 726fbbc1..07ef9c62 100644
--- a/ch_tools/chadmin/internal/utils.py
+++ b/ch_tools/chadmin/internal/utils.py
@@ -9,7 +9,14 @@
def execute_query(
- ctx, query, timeout=None, echo=False, dry_run=False, format_="default", **kwargs
+ ctx,
+ query,
+ timeout=None,
+ echo=False,
+ dry_run=False,
+ format_="default",
+ stream=False,
+ **kwargs
):
"""
Execute ClickHouse query.
@@ -24,6 +31,7 @@ def execute_query(
format_=format_,
echo=echo,
dry_run=dry_run,
+ stream=stream,
)
diff --git a/ch_tools/common/clickhouse/client/clickhouse_client.py b/ch_tools/common/clickhouse/client/clickhouse_client.py
index 07b67df1..c49b3b6e 100644
--- a/ch_tools/common/clickhouse/client/clickhouse_client.py
+++ b/ch_tools/common/clickhouse/client/clickhouse_client.py
@@ -64,6 +64,7 @@ def query(
timeout: Optional[int] = None,
echo: bool = False,
dry_run: bool = False,
+ stream: bool = False,
) -> Any:
"""
Execute query.
@@ -92,10 +93,15 @@ def query(
},
json=post_data,
timeout=timeout,
+ stream=stream,
)
response.raise_for_status()
+ # Return response for iterating over
+ if stream:
+ return response
+
if format_ in ("JSON", "JSONCompact"):
return response.json()
diff --git a/ch_tools/common/clickhouse/config/clickhouse.py b/ch_tools/common/clickhouse/config/clickhouse.py
index bc905698..b1d37121 100644
--- a/ch_tools/common/clickhouse/config/clickhouse.py
+++ b/ch_tools/common/clickhouse/config/clickhouse.py
@@ -1,5 +1,8 @@
import os.path
+from ch_tools.common.clickhouse.config.storage_configuration import (
+ ClickhouseStorageConfiguration,
+)
from ch_tools.common.utils import deep_merge
from .path import (
@@ -44,9 +47,11 @@ def zookeeper(self) -> ClickhouseZookeeperConfig:
"""
return ClickhouseZookeeperConfig(self._config_root.get("zookeeper", {}))
- def has_disk(self, name):
- storage_configuration = self._config_root.get("storage_configuration", {})
- return name in storage_configuration.get("disks", {})
+ @property
+ def storage_configuration(self) -> ClickhouseStorageConfiguration:
+ return ClickhouseStorageConfiguration(
+ self._config_root.get("storage_configuration", {})
+ )
def dump(self, mask_secrets=True):
return _dump_config(self._config, mask_secrets=mask_secrets)
diff --git a/ch_tools/chadmin/internal/object_storage/s3_disk_configuration.py b/ch_tools/common/clickhouse/config/storage_configuration.py
similarity index 64%
rename from ch_tools/chadmin/internal/object_storage/s3_disk_configuration.py
rename to ch_tools/common/clickhouse/config/storage_configuration.py
index fe20acda..963022e6 100644
--- a/ch_tools/chadmin/internal/object_storage/s3_disk_configuration.py
+++ b/ch_tools/common/clickhouse/config/storage_configuration.py
@@ -1,10 +1,8 @@
from dataclasses import dataclass
-from pathlib import Path
from urllib.parse import urlparse
-from lxml import etree # type: ignore[import]
-from typing_extensions import Self
-
+# YC specific value for sanity checking
+# TODO: pass bucket, prefix, endpoint as arguments to cli for versatility
BUCKET_NAME_PREFIX = "cloud-storage-"
@@ -17,23 +15,35 @@ class S3DiskConfiguration:
bucket_name: str
prefix: str
- @classmethod
- def from_config(cls, config_path: Path, disk_name: str) -> Self:
- config = etree.parse(config_path)
- disk = config.find(f"/storage_configuration/disks/{disk_name}")
- disk_type = disk.find("type").text
- if disk_type != "s3":
- raise TypeError(f"Unsupported object storage type {disk_type}")
+class ClickhouseStorageConfiguration:
+ """
+ Storage configuration section of ClickHouse server config.
+ """
+
+ def __init__(self, config: dict) -> None:
+ self._config = config
+
+ def has_disk(self, name: str) -> bool:
+ return name in self._config.get("disks", {})
+
+ def s3_disk_configuaration(self, name: str) -> S3DiskConfiguration:
+ if not self.has_disk(name):
+ raise RuntimeError(f"Config section for disk '{name}' is not found")
+
+ disk = self._config["disks"][name]
+
+ if disk["type"] != "s3":
+ raise TypeError(f"Unsupported object storage type {disk['type']}")
- access_key_id = disk.find("access_key_id").text
- secret_access_key = disk.find("secret_access_key").text
- endpoint: str = disk.find("endpoint").text
+ access_key_id = disk["access_key_id"]
+ secret_access_key = disk["secret_access_key"]
+ endpoint: str = disk["endpoint"]
_host, bucket_name, prefix, endpoint_url = _parse_endpoint(endpoint)
- return cls(
- name=disk_name,
+ return S3DiskConfiguration(
+ name=name,
endpoint_url=endpoint_url,
access_key_id=access_key_id,
secret_access_key=secret_access_key,
diff --git a/poetry.lock b/poetry.lock
index 1082f24f..f0e61177 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,6 +1,6 @@
[[package]]
name = "astroid"
-version = "2.15.6"
+version = "2.15.8"
description = "An abstract syntax tree for Python with inference support."
category = "dev"
optional = false
@@ -130,7 +130,7 @@ python-versions = "*"
[[package]]
name = "certifi"
-version = "2023.7.22"
+version = "2023.11.17"
description = "Python package for providing Mozilla's CA Bundle."
category = "main"
optional = false
@@ -184,14 +184,14 @@ typing-extensions = {version = "*", markers = "python_version <= \"3.8\""}
[[package]]
name = "codespell"
-version = "2.2.5"
+version = "2.2.6"
description = "Codespell"
category = "dev"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
[package.extras]
-dev = ["build", "chardet", "pygments", "pytest", "pytest-cov", "pytest-dependency", "ruff", "tomli"]
+dev = ["build", "chardet", "pre-commit", "pygments", "pytest", "pytest-cov", "pytest-dependency", "ruff", "tomli", "twine"]
hard-encoding-detection = ["chardet"]
toml = ["tomli"]
types = ["chardet (>=5.1.0)", "mypy", "pytest", "pytest-cov", "pytest-dependency"]
@@ -252,7 +252,7 @@ graph = ["objgraph (>=1.7.2)"]
[[package]]
name = "distro"
-version = "1.8.0"
+version = "1.9.0"
description = "Distro - an OS platform information API"
category = "dev"
optional = false
@@ -359,7 +359,7 @@ pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_ve
[[package]]
name = "idna"
-version = "3.4"
+version = "3.6"
description = "Internationalized Domain Names in Applications (IDNA)"
category = "main"
optional = false
@@ -407,17 +407,14 @@ python-versions = "*"
[[package]]
name = "isort"
-version = "5.12.0"
+version = "5.13.2"
description = "A Python utility / library to sort Python imports."
category = "dev"
optional = false
python-versions = ">=3.8.0"
[package.extras]
-colors = ["colorama (>=0.4.3)"]
-pipfile-deprecated-finder = ["pip-shims (>=0.5.2)", "pipreqs", "requirementslib"]
-plugins = ["setuptools"]
-requirements-deprecated-finder = ["pip-api", "pipreqs"]
+colors = ["colorama (>=0.4.6)"]
[[package]]
name = "jinja2"
@@ -481,25 +478,25 @@ test = ["eventlet (>=0.17.1)", "gevent (>=1.2)", "mock", "objgraph", "pytest", "
[[package]]
name = "lazy-object-proxy"
-version = "1.9.0"
+version = "1.10.0"
description = "A fast and thorough lazy object proxy."
category = "dev"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
[[package]]
name = "lxml"
-version = "4.9.3"
+version = "5.1.0"
description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API."
category = "main"
optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*"
+python-versions = ">=3.6"
[package.extras]
cssselect = ["cssselect (>=0.7)"]
html5 = ["html5lib"]
htmlsoup = ["beautifulsoup4"]
-source = ["Cython (>=0.29.35)"]
+source = ["Cython (>=3.0.7)"]
[[package]]
name = "markupsafe"
@@ -519,7 +516,7 @@ python-versions = ">=3.6"
[[package]]
name = "mypy"
-version = "1.5.1"
+version = "1.8.0"
description = "Optional static typing for Python"
category = "dev"
optional = false
@@ -533,6 +530,7 @@ typing-extensions = ">=4.1.0"
[package.extras]
dmypy = ["psutil (>=4.0)"]
install-types = ["pip"]
+mypyc = ["setuptools (>=50)"]
reports = ["lxml"]
[[package]]
@@ -564,7 +562,7 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
[[package]]
name = "paramiko"
-version = "3.3.1"
+version = "3.4.0"
description = "SSH2 protocol library"
category = "dev"
optional = false
@@ -582,7 +580,7 @@ invoke = ["invoke (>=2.0)"]
[[package]]
name = "parse"
-version = "1.19.1"
+version = "1.20.0"
description = "parse() is the opposite of format()"
category = "dev"
optional = false
@@ -607,19 +605,19 @@ testing = ["pytest (<5.0)", "pytest (>=5.0)", "pytest-html (>=1.19.0)"]
[[package]]
name = "pathspec"
-version = "0.11.2"
+version = "0.12.1"
description = "Utility library for gitignore style pattern matching of file paths."
category = "dev"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
[[package]]
name = "platformdirs"
-version = "3.10.0"
+version = "4.1.0"
description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
category = "dev"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
[package.extras]
docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.1)", "sphinx-autodoc-typehints (>=1.24)"]
@@ -642,11 +640,11 @@ testing = ["pytest", "pytest-benchmark"]
[[package]]
name = "psutil"
-version = "5.9.5"
+version = "5.9.8"
description = "Cross-platform lib for process and system monitoring in Python."
category = "main"
optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
[package.extras]
test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]
@@ -680,28 +678,28 @@ plugins = ["importlib-metadata"]
[[package]]
name = "pyhamcrest"
-version = "2.0.4"
+version = "2.1.0"
description = "Hamcrest framework for matcher objects"
category = "dev"
optional = false
python-versions = ">=3.6"
[package.extras]
-dev = ["black", "flake8", "pyhamcrest", "pytest-mypy", "towncrier", "tox", "tox-asdf", "twine"]
+dev = ["black", "doc2dash", "flake8", "pyhamcrest", "pytest-mypy", "towncrier", "tox", "tox-asdf", "twine"]
docs = ["alabaster (>=0.7,<1.0)", "sphinx (>=4.0,<5.0)"]
-tests = ["coverage", "dataclasses", "mypy (!=0.940)", "pytest (>=5.0)", "pytest-mypy-plugins", "pytest-sugar", "pytest-xdist", "types-dataclasses", "types-mock"]
+tests = ["coverage", "dataclasses", "mypy (!=0.940)", "pytest (>=5.0)", "pytest-mypy-plugins", "pytest-sugar", "pytest-xdist", "pyyaml", "types-dataclasses", "types-mock"]
tests-numpy = ["numpy", "pyhamcrest"]
[[package]]
name = "pylint"
-version = "2.17.5"
+version = "2.17.7"
description = "python code static checker"
category = "dev"
optional = false
python-versions = ">=3.7.2"
[package.dependencies]
-astroid = ">=2.15.6,<=2.17.0-dev0"
+astroid = ">=2.15.8,<=2.17.0-dev0"
colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""}
dill = [
{version = ">=0.2", markers = "python_version < \"3.11\""},
@@ -862,8 +860,8 @@ use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"]
[[package]]
name = "ruff"
-version = "0.0.287"
-description = "An extremely fast Python linter, written in Rust."
+version = "0.1.14"
+description = "An extremely fast Python linter and code formatter, written in Rust."
category = "dev"
optional = false
python-versions = ">=3.7"
@@ -922,7 +920,7 @@ python-versions = "*"
[[package]]
name = "texttable"
-version = "1.6.7"
+version = "1.7.0"
description = "module to create simple ASCII tables"
category = "dev"
optional = false
@@ -938,7 +936,7 @@ python-versions = ">=3.7"
[[package]]
name = "tomlkit"
-version = "0.12.1"
+version = "0.12.3"
description = "Style preserving TOML library"
category = "dev"
optional = false
@@ -964,26 +962,26 @@ telegram = ["requests"]
[[package]]
name = "types-pyopenssl"
-version = "23.2.0.2"
+version = "23.3.0.20240106"
description = "Typing stubs for pyOpenSSL"
category = "dev"
optional = false
-python-versions = "*"
+python-versions = ">=3.8"
[package.dependencies]
cryptography = ">=35.0.0"
[[package]]
name = "types-python-dateutil"
-version = "2.8.19.14"
+version = "2.8.19.20240106"
description = "Typing stubs for python-dateutil"
category = "dev"
optional = false
-python-versions = "*"
+python-versions = ">=3.8"
[[package]]
name = "types-pyyaml"
-version = "6.0.12.11"
+version = "6.0.12.12"
description = "Typing stubs for PyYAML"
category = "dev"
optional = false
@@ -991,7 +989,7 @@ python-versions = "*"
[[package]]
name = "types-requests"
-version = "2.31.0.2"
+version = "2.30.0.0"
description = "Typing stubs for requests"
category = "dev"
optional = false
@@ -1002,19 +1000,19 @@ types-urllib3 = "*"
[[package]]
name = "types-setuptools"
-version = "68.1.0.1"
+version = "69.0.0.20240125"
description = "Typing stubs for setuptools"
category = "dev"
optional = false
-python-versions = "*"
+python-versions = ">=3.8"
[[package]]
name = "types-tabulate"
-version = "0.9.0.3"
+version = "0.9.0.20240106"
description = "Typing stubs for tabulate"
category = "dev"
optional = false
-python-versions = "*"
+python-versions = ">=3.8"
[[package]]
name = "types-urllib3"
@@ -1034,14 +1032,14 @@ python-versions = ">=3.6"
[[package]]
name = "urllib3"
-version = "1.26.16"
+version = "1.26.18"
description = "HTTP library with thread-safe connection pooling, file post, and more."
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
[package.extras]
-brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)", "brotlipy (>=0.6.0)"]
+brotli = ["brotli (==1.0.9)", "brotli (>=1.0.9)", "brotlicffi (>=0.8.0)", "brotlipy (>=0.6.0)"]
secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"]
socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
@@ -1058,11 +1056,11 @@ six = "*"
[[package]]
name = "wrapt"
-version = "1.15.0"
+version = "1.16.0"
description = "Module for decorators, wrappers and monkey patching."
category = "dev"
optional = false
-python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
+python-versions = ">=3.6"
[[package]]
name = "xmltodict"
@@ -1087,12 +1085,12 @@ testing = ["func-timeout", "jaraco.itertools", "pytest (>=4.6)", "pytest-black (
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lock-version = "1.1"
python-versions = "^3.6.2"
-content-hash = "41e561511f92ec09662870324b188d6e3acdd76fab5ff83943ab872ee2ced835"
+content-hash = "a091e4a90c0260405652b0f02ed1bec6757d1c51ff5786ca27d172a2767369c0"
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@@ -1155,8 +1153,8 @@ cached-property = [
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@@ -1237,8 +1235,8 @@ cloup = [
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@@ -1274,8 +1272,8 @@ dill = [
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@@ -1304,8 +1302,8 @@ humanfriendly = [
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+ {file = "wrapt-1.16.0-cp39-cp39-musllinux_1_1_i686.whl", hash = "sha256:db2e408d983b0e61e238cf579c09ef7020560441906ca990fe8412153e3b291f"},
+ {file = "wrapt-1.16.0-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:edfad1d29c73f9b863ebe7082ae9321374ccb10879eeabc84ba3b69f2579d537"},
+ {file = "wrapt-1.16.0-cp39-cp39-win32.whl", hash = "sha256:ed867c42c268f876097248e05b6117a65bcd1e63b779e916fe2e33cd6fd0d3c3"},
+ {file = "wrapt-1.16.0-cp39-cp39-win_amd64.whl", hash = "sha256:eb1b046be06b0fce7249f1d025cd359b4b80fc1c3e24ad9eca33e0dcdb2e4a35"},
+ {file = "wrapt-1.16.0-py3-none-any.whl", hash = "sha256:6906c4100a8fcbf2fa735f6059214bb13b97f75b1a61777fcf6432121ef12ef1"},
+ {file = "wrapt-1.16.0.tar.gz", hash = "sha256:5f370f952971e7d17c7d1ead40e49f32345a7f7a5373571ef44d800d06b1899d"},
]
xmltodict = [
{file = "xmltodict-0.13.0-py2.py3-none-any.whl", hash = "sha256:aa89e8fd76320154a40d19a0df04a4695fb9dc5ba977cbb68ab3e4eb225e7852"},
diff --git a/tests/configuration.py b/tests/configuration.py
index f279bc11..470bfc53 100644
--- a/tests/configuration.py
+++ b/tests/configuration.py
@@ -45,16 +45,24 @@ def create():
},
}
+ s3 = {
+ "endpoint": "http://minio01:9000",
+ "port": 9000,
+ "access_secret_key": "test_secret",
+ "access_key_id": "test_key",
+ "bucket": "cloud-storage-test",
+ "boto_config": {
+ "addressing_style": "auto",
+ "region_name": "us-east-1",
+ },
+ "container": "minio01",
+ }
+
return {
"images_dir": "images",
"staging_dir": "staging",
"network_name": network_name,
- "s3": {
- "endpoint": "http://minio01:9000",
- "access_secret_key": "test_secret",
- "access_key_id": "test_key",
- "bucket": "test",
- },
+ "s3": s3,
"ch_backup": {
"encrypt_key": "test_encrypt",
},
diff --git a/tests/features/object_storage.feature b/tests/features/object_storage.feature
new file mode 100644
index 00000000..a5aa3804
--- /dev/null
+++ b/tests/features/object_storage.feature
@@ -0,0 +1,117 @@
+Feature: chadmin object-storage commands
+
+ Background:
+ Given default configuration
+ And a working s3
+ And a working zookeeper
+ And a working clickhouse on clickhouse01
+ And a working clickhouse on clickhouse02
+ Given we have executed queries on clickhouse01
+ """
+ CREATE DATABASE IF NOT EXISTS test ON CLUSTER '{cluster}';
+
+ CREATE TABLE IF NOT EXISTS test.table_01 ON CLUSTER '{cluster}' (n Int32)
+ ENGINE = ReplicatedMergeTree('/tables/table_01', '{replica}') ORDER BY n
+ SETTINGS storage_policy = 'object_storage';
+
+ INSERT INTO test.table_01 (n) SELECT number FROM system.numbers LIMIT 10;
+ """
+ Then S3 contains greater than 0 objects
+
+ Scenario: Dry-run clean on one replica with guard period
+ When we execute command on clickhouse01
+ """
+ chadmin object-storage clean --dry-run
+ """
+ Then we get response
+ """
+ Would delete 0 objects from bucket [cloud-storage-test]
+ """
+ When we execute command on clickhouse01
+ """
+ chadmin object-storage clean --to-time 0h --dry-run
+ """
+ Then we get response matches
+ """
+ Would delete [1-9][0-9]* objects from bucket \[cloud-storage-test\]
+ """
+
+
+ Scenario: Dry-run clean on cluster with guard period
+ When we execute command on clickhouse01
+ """
+ chadmin object-storage clean --dry-run --on-cluster
+ """
+ Then we get response
+ """
+ Would delete 0 objects from bucket [cloud-storage-test]
+ """
+ When we execute command on clickhouse01
+ """
+ chadmin object-storage clean --to-time 0h --dry-run --on-cluster
+ """
+ Then we get response
+ """
+ Would delete 0 objects from bucket [cloud-storage-test]
+ """
+
+ Scenario: Clean orphaned objects
+ When we put object in S3
+ """
+ bucket: cloud-storage-test
+ path: /data/orpaned_object.tsv
+ data: '1'
+ """
+ When we execute command on clickhouse01
+ """
+ chadmin object-storage clean --dry-run --to-time 0h --on-cluster
+ """
+ Then we get response
+ """
+ Would delete 1 objects from bucket [cloud-storage-test]
+ """
+ When we execute command on clickhouse01
+ """
+ chadmin object-storage clean --to-time 0h --on-cluster
+ """
+ Then we get response
+ """
+ Deleted 1 objects from bucket [cloud-storage-test]
+ """
+ And path does not exist in S3
+ """
+ bucket: cloud-storage-test
+ path: /data/orpaned_object.tsv
+ """
+
+ Scenario: Clean many orphaned objects
+ When we put 100 objects in S3
+ """
+ bucket: cloud-storage-test
+ path: /data/orpaned_object.tsv
+ data: '1'
+ """
+ When we execute command on clickhouse01
+ """
+ chadmin object-storage clean --dry-run --to-time 0h --on-cluster
+ """
+ Then we get response
+ """
+ Would delete 100 objects from bucket [cloud-storage-test]
+ """
+ When we execute command on clickhouse01
+ """
+ chadmin object-storage clean --to-time 0h --on-cluster
+ """
+ Then we get response
+ """
+ Deleted 100 objects from bucket [cloud-storage-test]
+ """
+ When we execute command on clickhouse01
+ """
+ chadmin object-storage clean --to-time 0h --dry-run --on-cluster
+ """
+ Then we get response
+ """
+ Would delete 0 objects from bucket [cloud-storage-test]
+ """
diff --git a/tests/images/clickhouse/config/config.xml b/tests/images/clickhouse/config/config.xml
index 6f2ceb59..81844f3f 100644
--- a/tests/images/clickhouse/config/config.xml
+++ b/tests/images/clickhouse/config/config.xml
@@ -42,7 +42,7 @@
s3
- {{ conf.s3.endpoint }}/test/data/
+ {{ conf.s3.endpoint }}/{{ conf.s3.bucket }}/data/
{{ conf.s3.access_key_id }}
{{ conf.s3.access_secret_key }}
@@ -85,5 +85,6 @@
{{ instance_name }}.{{ conf.network_name }}
+ cluster
diff --git a/tests/modules/s3.py b/tests/modules/s3.py
new file mode 100644
index 00000000..2d32c0d9
--- /dev/null
+++ b/tests/modules/s3.py
@@ -0,0 +1,96 @@
+"""
+S3 client.
+"""
+import logging
+from typing import List, Optional
+
+import boto3
+from botocore.client import Config
+from botocore.errorfactory import ClientError
+
+from . import docker
+from .typing import ContextT
+
+
+class S3Client:
+ """
+ S3 client.
+ """
+
+ def __init__(self, context: ContextT, bucket: Optional[str] = None) -> None:
+ config = context.conf["s3"]
+ boto_config = config["boto_config"]
+ self._s3_session = boto3.session.Session(
+ aws_access_key_id=config["access_key_id"],
+ aws_secret_access_key=config["access_secret_key"],
+ region_name=boto_config["region_name"],
+ )
+
+ host, port = docker.get_exposed_port(
+ docker.get_container(context, context.conf["s3"]["container"]),
+ context.conf["s3"]["port"],
+ )
+ endpoint_url = f"http://{host}:{port}"
+ self._s3_client = self._s3_session.client(
+ service_name="s3",
+ endpoint_url=endpoint_url,
+ config=Config(
+ s3={
+ "addressing_style": boto_config["addressing_style"],
+ "region_name": boto_config["region_name"],
+ }
+ ),
+ )
+
+ if bucket:
+ self._s3_bucket_name = bucket
+ else:
+ self._s3_bucket_name = config["bucket"]
+
+ for module_logger in ("boto3", "botocore", "s3transfer", "urllib3"):
+ logging.getLogger(module_logger).setLevel(logging.CRITICAL)
+
+ def upload_data(self, data: bytes, remote_path: str) -> None:
+ """
+ Upload given bytes or file-like object.
+ """
+ remote_path = remote_path.lstrip("/")
+ self._s3_client.put_object(
+ Body=data, Bucket=self._s3_bucket_name, Key=remote_path
+ )
+
+ def delete_data(self, remote_path: str) -> None:
+ """
+ Delete file from storage.
+ """
+ remote_path = remote_path.lstrip("/")
+ self._s3_client.delete_object(Bucket=self._s3_bucket_name, Key=remote_path)
+
+ def path_exists(self, remote_path: str) -> bool:
+ """
+ Check if remote path exists.
+ """
+ try:
+ self._s3_client.head_object(Bucket=self._s3_bucket_name, Key=remote_path)
+ return True
+ except ClientError:
+ return False
+
+ def list_objects(self, prefix: str) -> List[str]:
+ """
+ List all objects with given prefix.
+ """
+ contents = []
+ paginator = self._s3_client.get_paginator("list_objects")
+ list_object_kwargs = dict(Bucket=self._s3_bucket_name, Prefix=prefix)
+
+ for result in paginator.paginate(**list_object_kwargs):
+ if result.get("CommonPrefixes") is not None:
+ for dir_prefix in result.get("CommonPrefixes"):
+ contents.append(dir_prefix.get("Prefix"))
+
+ if result.get("Contents") is not None:
+ for file_key in result.get("Contents"):
+ contents.append(file_key.get("Key"))
+
+ return contents
diff --git a/tests/steps/common.py b/tests/steps/common.py
index 8ce6318c..24465553 100644
--- a/tests/steps/common.py
+++ b/tests/steps/common.py
@@ -6,7 +6,7 @@
import requests
import yaml
from behave import given, then, when
-from hamcrest import assert_that, contains_string, equal_to, is_not
+from hamcrest import assert_that, contains_string, equal_to, is_not, matches_regexp
from modules import docker
from modules.utils import merge
@@ -56,6 +56,11 @@ def step_get_response_contains(context):
assert_that(context.response, contains_string(context.text))
+@then("we get response matches")
+def step_get_response_matches(context):
+ assert_that(context.response, matches_regexp(context.text))
+
+
@then("we get response not contains {entry:w}")
def step_get_response_not_contains(context, entry):
assert_that(context.response, is_not(contains_string(entry))) # type: ignore
diff --git a/tests/steps/s3.py b/tests/steps/s3.py
index 07113364..ea5ec507 100644
--- a/tests/steps/s3.py
+++ b/tests/steps/s3.py
@@ -2,13 +2,81 @@
Steps for interacting with S3.
"""
-from behave import given
-from modules import minio
+from behave import given, then, when
+from hamcrest import assert_that, equal_to, greater_than
+from modules import minio, s3
+from modules.steps import get_step_data
-@given("a working s3")
+@given("a working S3")
def step_wait_for_s3_alive(context):
"""
Ensure that S3 is ready to accept incoming requests.
"""
minio.initialize(context)
+
+
+@then("S3 contains {count:d} objects")
+def step_s3_contains_files(context, count):
+ s3_client = s3.S3Client(context)
+ objects = s3_client.list_objects("/")
+ assert_that(
+ len(objects),
+ equal_to(count),
+ f"Objects count = {len(objects)}, expected {count}, objects {objects}",
+ )
+
+
+@then("S3 contains greater than {count:d} objects")
+def step_s3_contains_greater_than_files(context, count):
+ s3_client = s3.S3Client(context)
+ objects = s3_client.list_objects("/")
+ assert_that(
+ len(objects),
+ greater_than(count),
+ f"Objects count = {len(objects)}, expected {count}, objects {objects}",
+ )
+
+
+@then("S3 bucket {bucket} contains {count:d} objects")
+def step_cloud_storage_bucket_contains_files(context, bucket, count):
+ s3_client = s3.S3Client(context, bucket)
+ objects = s3_client.list_objects("/")
+ assert_that(
+ len(objects),
+ equal_to(count),
+ f"Objects count = {len(objects)}, expected {count}, objects {objects}",
+ )
+
+
+@when("we put object in S3")
+def step_put_file_in_s3(context):
+ conf = get_step_data(context)
+ s3_client = s3.S3Client(context, conf["bucket"])
+ s3_client.upload_data(conf["data"], conf["path"])
+ assert s3_client.path_exists(conf["path"])
+
+
+@when("we put {count:d} objects in S3")
+def step_put_file_count_in_s3(context, count):
+ conf = get_step_data(context)
+ s3_client = s3.S3Client(context, conf["bucket"])
+ for i in range(count):
+ path = f"{conf['path']}-{i}"
+ s3_client.upload_data(conf["data"], path)
+ assert s3_client.path_exists(path)
+
+
+@when("we delete object in S3")
+def stop_delete_file_in_S3(context):
+ conf = get_step_data(context)
+ s3_client = s3.S3Client(context, conf["bucket"])
+ s3_client.delete_data(conf["path"])
+ assert not s3_client.path_exists(conf["path"])
+
+
+@then("Path does not exist in S3")
+def step_create_file_in_s3(context):
+ conf = get_step_data(context)
+ s3_client = s3.S3Client(context, conf["bucket"])
+ assert not s3_client.path_exists(conf["path"])