From 75f431a5af1b481fc3eaaa21fbfe9533d0203c83 Mon Sep 17 00:00:00 2001 From: Aleksei Filatov Date: Thu, 25 Jan 2024 13:13:55 +0300 Subject: [PATCH] Rework clean command to use remote_data_paths table --- ch_tools/chadmin/cli/object_storage_group.py | 299 +++----- .../chadmin/internal/diagnostics/formatter.py | 2 +- .../internal/object_storage/__init__.py | 4 - .../object_storage/collect_metadata.py | 48 -- .../internal/object_storage/s3_cleanup.py | 6 +- .../internal/object_storage/s3_iterator.py | 8 +- ch_tools/chadmin/internal/utils.py | 10 +- .../clickhouse/client/clickhouse_client.py | 6 + .../common/clickhouse/config/clickhouse.py | 11 +- .../config/storage_configuration.py} | 42 +- poetry.lock | 688 +++++++++--------- tests/configuration.py | 20 +- tests/features/object_storage.feature | 117 +++ tests/images/clickhouse/config/config.xml | 3 +- tests/modules/s3.py | 96 +++ tests/steps/common.py | 7 +- tests/steps/s3.py | 74 +- 17 files changed, 808 insertions(+), 633 deletions(-) delete mode 100644 ch_tools/chadmin/internal/object_storage/collect_metadata.py rename ch_tools/{chadmin/internal/object_storage/s3_disk_configuration.py => common/clickhouse/config/storage_configuration.py} (64%) create mode 100644 tests/features/object_storage.feature create mode 100644 tests/modules/s3.py diff --git a/ch_tools/chadmin/cli/object_storage_group.py b/ch_tools/chadmin/cli/object_storage_group.py index 8a15b4d1..d5e42553 100644 --- a/ch_tools/chadmin/cli/object_storage_group.py +++ b/ch_tools/chadmin/cli/object_storage_group.py @@ -1,52 +1,30 @@ -import contextlib -import json import logging -import sys from datetime import datetime, timedelta, timezone -from gzip import GzipFile -from io import TextIOWrapper -from pathlib import Path -from typing import BinaryIO, Dict, List, Optional, Union +from typing import List, Optional import click from click import Context, group, option, pass_context +from ch_tools.chadmin.cli import get_clickhouse_config from ch_tools.chadmin.internal.object_storage import ( - ObjectSummary, - S3DiskConfiguration, - S3ObjectLocalMetaData, cleanup_s3_object_storage, - collect_metadata, s3_object_storage_iterator, ) +from ch_tools.chadmin.internal.utils import execute_query from ch_tools.common.cli.parameters import TimeSpanParamType +from ch_tools.common.clickhouse.config.storage_configuration import S3DiskConfiguration -STORAGE_POLICY_CONFIG_PATH = Path("/etc/clickhouse-server/config.d/storage_policy.xml") # The guard interval is used for S3 objects for which metadata is not found. # And for metadata for which object is not found in S3. # These objects are not counted if their last modified time fall in the interval from the moment of starting analyzing. DEFAULT_GUARD_INTERVAL = "24h" - - -def get_disk_metadata_paths(disk_name: str) -> List[Path]: - return [ - Path(f"/var/lib/clickhouse/disks/{disk_name}/store"), # Atomic database engine - Path(f"/var/lib/clickhouse/disks/{disk_name}/data"), # Ordinary database engine - Path(f"/var/lib/clickhouse/disks/{disk_name}/shadow"), # Backups - ] +# Prefix for a listing table name +LISTING_TABLE_PREFIX = "listing_objects_from_" +# Batch size for inserts in a listing table +INSERT_BATCH_SIZE = 1000 @group("object-storage") -@option( - "-c", - "--config", - "config_path", - type=click.Path( - exists=True, file_okay=True, dir_okay=False, readable=True, path_type=Path - ), - default=STORAGE_POLICY_CONFIG_PATH, - help="ClickHouse storage policy config.", -) @option( "-d", "--disk", @@ -55,60 +33,25 @@ def get_disk_metadata_paths(disk_name: str) -> List[Path]: help="S3 disk name.", ) @pass_context -def object_storage_group(ctx: Context, config_path: Path, disk_name: str) -> None: +def object_storage_group(ctx: Context, disk_name: str) -> None: """Commands to manage S3 objects and their metadata.""" - # Restrict excessive boto logging _set_boto_log_level(logging.WARNING) - ctx.obj["disk_configuration"] = S3DiskConfiguration.from_config( - config_path, disk_name - ) + ch_config = get_clickhouse_config(ctx) + ctx.obj[ + "disk_configuration" + ] = ch_config.storage_configuration.s3_disk_configuaration(disk_name) -@object_storage_group.command("list") -@option( - "-o", - "--orphaned", - "orphaned", - is_flag=True, - default=False, - help="List objects that are not referenced in the metadata.", -) +@object_storage_group.command("clean") @option( "-p", - "--object-name-prefix", + "--prefix", + "--object_name_prefix", "object_name_prefix", default="", - help="Additional prefix of object name using for listing.", -) -@option( - "-l", - "--limit", - "limit", - type=int, - help="Return at most this many objects.", -) -@option( - "-f", - "--dump-file", - "dump_file", - type=click.Path(path_type=Path), - help="Dump result to the file instead of STDOUT.", -) -@option( - "-c", - "--compressed", - "compressed", - is_flag=True, - help="Compress an output using GZIP format.", -) -@option( - "-q", - "--quiet", - "quiet", - is_flag=True, - help="Output only newline delimited object keys.", + help="Additional prefix of object name used while listing bucket.", ) @option( "--from-time", @@ -129,119 +72,123 @@ def object_storage_group(ctx: Context, config_path: Path, disk_name: str) -> Non type=TimeSpanParamType(), help=("End of inspecting interval in human-friendly format."), ) +@option( + "--on-cluster", + "on_cluster", + is_flag=True, + help=("List objects on all hosts in a cluster."), +) +@option( + "--cluster", + "cluster_name", + default="{cluster}", + help=("Cluster to be cleaned. Default value is macro."), +) +@option( + "--dry-run", + "dry_run", + is_flag=True, + help=("Do not delete objects. Show only statistics."), +) +@option( + "--keep-paths", + "keep_paths", + is_flag=True, + help=("Do not delete collected paths of objects from object storage."), +) @pass_context -def list_objects( +def clean_object_storage( ctx: Context, - orphaned: bool, object_name_prefix: str, - dump_file: Optional[Path], - compressed: bool, - quiet: bool, from_time: Optional[timedelta], to_time: timedelta, - limit: Optional[int], + on_cluster: bool, + cluster_name: str, + dry_run: bool, + keep_paths: bool, ) -> None: """ - List S3 objects. + Clean orphaned S3 objects. """ - if from_time is not None and from_time <= to_time: + if from_time is not None and to_time <= from_time: raise click.BadParameter( - "from_time parameter must be greater than to_time", + "'to_time' parameter must be greater than 'from_time'", param_hint="--from-time", ) disk_conf: S3DiskConfiguration = ctx.obj["disk_configuration"] now = datetime.now(timezone.utc) - counter = 0 - - with dump_writer(compressed, dump_file) as writer: - object_key_to_metadata = collect_metadata( - get_disk_metadata_paths(disk_conf.name) + remote_data_paths_table = "system.remote_data_paths" + if on_cluster: + remote_data_paths_table = ( + f"clusterAllReplicas('{cluster_name}', {remote_data_paths_table})" ) - for name, obj in s3_object_storage_iterator( - disk_conf, object_name_prefix=object_name_prefix - ): - if limit is not None and counter >= limit: - break - - metadata = object_key_to_metadata.get(name) - - if obj.last_modified > now - to_time: - continue - if from_time is not None and obj.last_modified < now - from_time: - continue - - if orphaned and metadata: - continue - if not orphaned and not metadata: - continue - - writer.write(_get_dump_line(obj, metadata, quiet)) - counter += 1 + listing_table = LISTING_TABLE_PREFIX + disk_conf.name + # Create listing table for storing paths from object storage + execute_query( + ctx, + f"CREATE TABLE IF NOT EXISTS {listing_table} (obj_path String) ENGINE MergeTree ORDER BY obj_path", + ) -@object_storage_group.command("clean") -@option( - "--prefix", - "prefix", - help="Prefix path to delete objects. If not empty it has more priority than other options.", -) -@option( - "-f", - "--file", - "file", - type=click.File("rb"), - help="File containing S3 object keys delimited by newlines.", - default=sys.stdin.buffer, - show_default="STDIN", -) -@option( - "-c", - "--compressed", - "compressed", - is_flag=True, - help="Input stream is compressed using GZIP format.", -) -@pass_context -def clean_object_storage(ctx, prefix, file, compressed): - """ - Clean up needless S3 objects. + obj_paths_batch = [] + counter = 0 + for _, obj in s3_object_storage_iterator( + disk_conf, object_name_prefix=object_name_prefix + ): + if obj.last_modified > now - to_time: + continue + if from_time is not None and obj.last_modified < now - from_time: + continue + + obj_paths_batch.append(obj.key) + counter += 1 + if len(obj_paths_batch) >= INSERT_BATCH_SIZE: + _insert_listing_batch(ctx, obj_paths_batch, listing_table) + obj_paths_batch.clear() + + # Insert last batch (might be shorter) + if obj_paths_batch: + _insert_listing_batch(ctx, obj_paths_batch, listing_table) + + antijoin_query = f""" + SELECT obj_path FROM {listing_table} AS object_storage + LEFT ANTI JOIN {remote_data_paths_table} AS object_table + ON object_table.remote_path = object_storage.obj_path + AND object_table.disk_name = '{disk_conf.name}' """ - disk_conf: S3DiskConfiguration = ctx.obj["disk_configuration"] - - if compressed: - file = GzipFile(fileobj=file) - file = TextIOWrapper(file) - - if prefix: - file = ( - obj.key - for _, obj in s3_object_storage_iterator( - disk_conf, path_prefix=prefix, skip_ignoring=True - ) - ) - - lines_stripped = ( - line.rstrip() for line in file - ) # lazily iterate over file stripping newline - deleted = cleanup_s3_object_storage(disk_conf, lines_stripped) - - click.echo(f"Deleted {deleted} objects from bucket [{disk_conf.bucket_name}]") + logging.info("Antijoin query: %s", antijoin_query) + + deleted = 0 + with execute_query( + ctx, antijoin_query, stream=True, format_="TabSeparated" + ) as resp: + # make generator for lazy iterating + paths_to_delete = (line.decode() for line in resp.iter_lines()) + if dry_run: + # just count items + deleted = sum(1 for _ in paths_to_delete) + else: + deleted = cleanup_s3_object_storage(disk_conf, paths_to_delete) + + if not keep_paths: + execute_query(ctx, f"TRUNCATE {listing_table}", format_=None) + + click.echo( + f"{'Would delete' if dry_run else 'Deleted'} {deleted} objects from bucket [{disk_conf.bucket_name}]" + ) -@contextlib.contextmanager -def dump_writer(compressed, file_path=None): - out_file = open(file_path, "wb") if file_path is not None else sys.stdout.buffer - writer: Union[GzipFile, BinaryIO] = ( - GzipFile(mode="wb", fileobj=out_file) if compressed else out_file +def _insert_listing_batch( + ctx: Context, obj_paths_batch: List[str], listing_table: str +) -> None: + batch_values = ",".join(f"('{obj_path}')" for obj_path in obj_paths_batch) + execute_query( + ctx, + f"INSERT INTO {listing_table} (obj_path) VALUES {batch_values}", + format_=None, ) - try: - yield writer - finally: - writer.flush() - if file_path is not None or compressed: - writer.close() def _set_boto_log_level(level: int) -> None: @@ -250,25 +197,3 @@ def _set_boto_log_level(level: int) -> None: logging.getLogger("nose").setLevel(level) logging.getLogger("s3transfer").setLevel(level) logging.getLogger("urllib3").setLevel(level) - - -def _get_dump_line( - obj: ObjectSummary, - metadata_files: Optional[Dict[Path, S3ObjectLocalMetaData]], - quiet: bool, -) -> bytes: - if quiet: - res = obj.key - else: - res = json.dumps( - { - "object": { - "key": obj.key, - "size": obj.size, - "last_modified": str(obj.last_modified), - }, - "files": list(metadata_files) if metadata_files else [], - }, - default=str, - ) - return f"{res}\n".encode() diff --git a/ch_tools/chadmin/internal/diagnostics/formatter.py b/ch_tools/chadmin/internal/diagnostics/formatter.py index b18e248d..2b89d50e 100644 --- a/ch_tools/chadmin/internal/diagnostics/formatter.py +++ b/ch_tools/chadmin/internal/diagnostics/formatter.py @@ -19,7 +19,7 @@ def format_storage(dbaas_config, ch_config): disk_size = format_size(dbaas_config.disk_size, binary=True) storage = f"{disk_size} {disk_type}" - if ch_config.has_disk("object_storage"): + if ch_config.storage_configuration.has_disk("object_storage"): storage += " + S3" return storage diff --git a/ch_tools/chadmin/internal/object_storage/__init__.py b/ch_tools/chadmin/internal/object_storage/__init__.py index 4dd0bcc8..22969a8f 100644 --- a/ch_tools/chadmin/internal/object_storage/__init__.py +++ b/ch_tools/chadmin/internal/object_storage/__init__.py @@ -1,10 +1,6 @@ -from ch_tools.chadmin.internal.object_storage.collect_metadata import collect_metadata from ch_tools.chadmin.internal.object_storage.s3_cleanup import ( cleanup_s3_object_storage, ) -from ch_tools.chadmin.internal.object_storage.s3_disk_configuration import ( - S3DiskConfiguration, -) from ch_tools.chadmin.internal.object_storage.s3_iterator import ( ObjectSummary, s3_object_storage_iterator, diff --git a/ch_tools/chadmin/internal/object_storage/collect_metadata.py b/ch_tools/chadmin/internal/object_storage/collect_metadata.py deleted file mode 100644 index 2e51094a..00000000 --- a/ch_tools/chadmin/internal/object_storage/collect_metadata.py +++ /dev/null @@ -1,48 +0,0 @@ -import logging -import os -from collections import defaultdict -from pathlib import Path -from typing import Dict, Iterable - -from ch_tools.chadmin.internal.object_storage.s3_local_metadata import ( - S3ObjectLocalMetaData, -) - -IGNORED_FILENAMES = ["frozen_metadata.txt", "revision.txt"] - -ObjectKeyToMetadata = Dict[str, Dict[Path, S3ObjectLocalMetaData]] - - -def collect_metadata(paths: Iterable[Path]) -> ObjectKeyToMetadata: - """ - Return dictionary of parsed metadata from local disk with access by S3 object key. - """ - logging.debug("Metadata collecting for paths: %s", str(paths)) - res: ObjectKeyToMetadata = defaultdict(dict) - - for top_dir in paths: - if not top_dir.exists(): - logging.debug("Metadata top_dir `%s` is not exist", top_dir) - continue - - for dirpath, _dirnames, filenames in os.walk(str(top_dir)): - for filename in filenames: - if filename in IGNORED_FILENAMES: - continue - - file_path = Path(dirpath) / filename - try: - metadata = S3ObjectLocalMetaData.from_file(file_path) - except Exception as error: - logging.debug( - "Skip error occurred while reading metadata from `%s`: %s", - file_path, - repr(error), - ) - continue - - for obj in metadata.objects: - res[obj.key][file_path] = metadata - - logging.debug("Metadata collected") - return res diff --git a/ch_tools/chadmin/internal/object_storage/s3_cleanup.py b/ch_tools/chadmin/internal/object_storage/s3_cleanup.py index d8bd4a51..362e09fa 100644 --- a/ch_tools/chadmin/internal/object_storage/s3_cleanup.py +++ b/ch_tools/chadmin/internal/object_storage/s3_cleanup.py @@ -3,10 +3,8 @@ import boto3 from botocore.client import Config # type: ignore[import] -from ch_tools.chadmin.internal.object_storage.s3_disk_configuration import ( - S3DiskConfiguration, -) from ch_tools.chadmin.internal.utils import chunked +from ch_tools.common.clickhouse.config.storage_configuration import S3DiskConfiguration BULK_DELETE_CHUNK_SIZE = 1000 @@ -17,7 +15,7 @@ def cleanup_s3_object_storage(disk: S3DiskConfiguration, keys: Iterator[str]) -> endpoint_url=disk.endpoint_url, aws_access_key_id=disk.access_key_id, aws_secret_access_key=disk.secret_access_key, - config=Config(s3={"addressing_style": "virtual"}), + config=Config(s3={"addressing_style": "auto"}), ) bucket = s3.Bucket(disk.bucket_name) deleted = 0 diff --git a/ch_tools/chadmin/internal/object_storage/s3_iterator.py b/ch_tools/chadmin/internal/object_storage/s3_iterator.py index a81a200d..53dde89f 100644 --- a/ch_tools/chadmin/internal/object_storage/s3_iterator.py +++ b/ch_tools/chadmin/internal/object_storage/s3_iterator.py @@ -1,11 +1,9 @@ from typing import Any, Iterator, Optional, Tuple import boto3 # type: ignore[import] -from botocore.client import Config # type: ignore[import] +from botocore.client import Config -from ch_tools.chadmin.internal.object_storage.s3_disk_configuration import ( - S3DiskConfiguration, -) +from ch_tools.common.clickhouse.config.storage_configuration import S3DiskConfiguration ObjectSummary = Any IGNORED_OBJECT_NAME_PREFIXES = ["operations", ".SCHEMA_VERSION"] @@ -23,7 +21,7 @@ def s3_object_storage_iterator( endpoint_url=disk.endpoint_url, aws_access_key_id=disk.access_key_id, aws_secret_access_key=disk.secret_access_key, - config=Config(s3={"addressing_style": "virtual"}), + config=Config(s3={"addressing_style": "auto"}), ) bucket = s3.Bucket(disk.bucket_name) diff --git a/ch_tools/chadmin/internal/utils.py b/ch_tools/chadmin/internal/utils.py index 726fbbc1..07ef9c62 100644 --- a/ch_tools/chadmin/internal/utils.py +++ b/ch_tools/chadmin/internal/utils.py @@ -9,7 +9,14 @@ def execute_query( - ctx, query, timeout=None, echo=False, dry_run=False, format_="default", **kwargs + ctx, + query, + timeout=None, + echo=False, + dry_run=False, + format_="default", + stream=False, + **kwargs ): """ Execute ClickHouse query. @@ -24,6 +31,7 @@ def execute_query( format_=format_, echo=echo, dry_run=dry_run, + stream=stream, ) diff --git a/ch_tools/common/clickhouse/client/clickhouse_client.py b/ch_tools/common/clickhouse/client/clickhouse_client.py index 07b67df1..c49b3b6e 100644 --- a/ch_tools/common/clickhouse/client/clickhouse_client.py +++ b/ch_tools/common/clickhouse/client/clickhouse_client.py @@ -64,6 +64,7 @@ def query( timeout: Optional[int] = None, echo: bool = False, dry_run: bool = False, + stream: bool = False, ) -> Any: """ Execute query. @@ -92,10 +93,15 @@ def query( }, json=post_data, timeout=timeout, + stream=stream, ) response.raise_for_status() + # Return response for iterating over + if stream: + return response + if format_ in ("JSON", "JSONCompact"): return response.json() diff --git a/ch_tools/common/clickhouse/config/clickhouse.py b/ch_tools/common/clickhouse/config/clickhouse.py index bc905698..b1d37121 100644 --- a/ch_tools/common/clickhouse/config/clickhouse.py +++ b/ch_tools/common/clickhouse/config/clickhouse.py @@ -1,5 +1,8 @@ import os.path +from ch_tools.common.clickhouse.config.storage_configuration import ( + ClickhouseStorageConfiguration, +) from ch_tools.common.utils import deep_merge from .path import ( @@ -44,9 +47,11 @@ def zookeeper(self) -> ClickhouseZookeeperConfig: """ return ClickhouseZookeeperConfig(self._config_root.get("zookeeper", {})) - def has_disk(self, name): - storage_configuration = self._config_root.get("storage_configuration", {}) - return name in storage_configuration.get("disks", {}) + @property + def storage_configuration(self) -> ClickhouseStorageConfiguration: + return ClickhouseStorageConfiguration( + self._config_root.get("storage_configuration", {}) + ) def dump(self, mask_secrets=True): return _dump_config(self._config, mask_secrets=mask_secrets) diff --git a/ch_tools/chadmin/internal/object_storage/s3_disk_configuration.py b/ch_tools/common/clickhouse/config/storage_configuration.py similarity index 64% rename from ch_tools/chadmin/internal/object_storage/s3_disk_configuration.py rename to ch_tools/common/clickhouse/config/storage_configuration.py index fe20acda..963022e6 100644 --- a/ch_tools/chadmin/internal/object_storage/s3_disk_configuration.py +++ b/ch_tools/common/clickhouse/config/storage_configuration.py @@ -1,10 +1,8 @@ from dataclasses import dataclass -from pathlib import Path from urllib.parse import urlparse -from lxml import etree # type: ignore[import] -from typing_extensions import Self - +# YC specific value for sanity checking +# TODO: pass bucket, prefix, endpoint as arguments to cli for versatility BUCKET_NAME_PREFIX = "cloud-storage-" @@ -17,23 +15,35 @@ class S3DiskConfiguration: bucket_name: str prefix: str - @classmethod - def from_config(cls, config_path: Path, disk_name: str) -> Self: - config = etree.parse(config_path) - disk = config.find(f"/storage_configuration/disks/{disk_name}") - disk_type = disk.find("type").text - if disk_type != "s3": - raise TypeError(f"Unsupported object storage type {disk_type}") +class ClickhouseStorageConfiguration: + """ + Storage configuration section of ClickHouse server config. + """ + + def __init__(self, config: dict) -> None: + self._config = config + + def has_disk(self, name: str) -> bool: + return name in self._config.get("disks", {}) + + def s3_disk_configuaration(self, name: str) -> S3DiskConfiguration: + if not self.has_disk(name): + raise RuntimeError(f"Config section for disk '{name}' is not found") + + disk = self._config["disks"][name] + + if disk["type"] != "s3": + raise TypeError(f"Unsupported object storage type {disk['type']}") - access_key_id = disk.find("access_key_id").text - secret_access_key = disk.find("secret_access_key").text - endpoint: str = disk.find("endpoint").text + access_key_id = disk["access_key_id"] + secret_access_key = disk["secret_access_key"] + endpoint: str = disk["endpoint"] _host, bucket_name, prefix, endpoint_url = _parse_endpoint(endpoint) - return cls( - name=disk_name, + return S3DiskConfiguration( + name=name, endpoint_url=endpoint_url, access_key_id=access_key_id, secret_access_key=secret_access_key, diff --git a/poetry.lock b/poetry.lock index 1082f24f..f0e61177 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,6 +1,6 @@ [[package]] name = "astroid" -version = "2.15.6" +version = "2.15.8" description = "An abstract syntax tree for Python with inference support." category = "dev" optional = false @@ -130,7 +130,7 @@ python-versions = "*" [[package]] name = "certifi" -version = "2023.7.22" +version = "2023.11.17" description = "Python package for providing Mozilla's CA Bundle." category = "main" optional = false @@ -184,14 +184,14 @@ typing-extensions = {version = "*", markers = "python_version <= \"3.8\""} [[package]] name = "codespell" -version = "2.2.5" +version = "2.2.6" description = "Codespell" category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.extras] -dev = ["build", "chardet", "pygments", "pytest", "pytest-cov", "pytest-dependency", "ruff", "tomli"] +dev = ["build", "chardet", "pre-commit", "pygments", "pytest", "pytest-cov", "pytest-dependency", "ruff", "tomli", "twine"] hard-encoding-detection = ["chardet"] toml = ["tomli"] types = ["chardet (>=5.1.0)", "mypy", "pytest", "pytest-cov", "pytest-dependency"] @@ -252,7 +252,7 @@ graph = ["objgraph (>=1.7.2)"] [[package]] name = "distro" -version = "1.8.0" +version = "1.9.0" description = "Distro - an OS platform information API" category = "dev" optional = false @@ -359,7 +359,7 @@ pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_ve [[package]] name = "idna" -version = "3.4" +version = "3.6" description = "Internationalized Domain Names in Applications (IDNA)" category = "main" optional = false @@ -407,17 +407,14 @@ python-versions = "*" [[package]] name = "isort" -version = "5.12.0" +version = "5.13.2" description = "A Python utility / library to sort Python imports." category = "dev" optional = false python-versions = ">=3.8.0" [package.extras] -colors = ["colorama (>=0.4.3)"] -pipfile-deprecated-finder = ["pip-shims (>=0.5.2)", "pipreqs", "requirementslib"] -plugins = ["setuptools"] -requirements-deprecated-finder = ["pip-api", "pipreqs"] +colors = ["colorama (>=0.4.6)"] [[package]] name = "jinja2" @@ -481,25 +478,25 @@ test = ["eventlet (>=0.17.1)", "gevent (>=1.2)", "mock", "objgraph", "pytest", " [[package]] name = "lazy-object-proxy" -version = "1.9.0" +version = "1.10.0" description = "A fast and thorough lazy object proxy." category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [[package]] name = "lxml" -version = "4.9.3" +version = "5.1.0" description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API." category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*" +python-versions = ">=3.6" [package.extras] cssselect = ["cssselect (>=0.7)"] html5 = ["html5lib"] htmlsoup = ["beautifulsoup4"] -source = ["Cython (>=0.29.35)"] +source = ["Cython (>=3.0.7)"] [[package]] name = "markupsafe" @@ -519,7 +516,7 @@ python-versions = ">=3.6" [[package]] name = "mypy" -version = "1.5.1" +version = "1.8.0" description = "Optional static typing for Python" category = "dev" optional = false @@ -533,6 +530,7 @@ typing-extensions = ">=4.1.0" [package.extras] dmypy = ["psutil (>=4.0)"] install-types = ["pip"] +mypyc = ["setuptools (>=50)"] reports = ["lxml"] [[package]] @@ -564,7 +562,7 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" [[package]] name = "paramiko" -version = "3.3.1" +version = "3.4.0" description = "SSH2 protocol library" category = "dev" optional = false @@ -582,7 +580,7 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"access_key_id": "test_key", - "bucket": "test", - }, + "s3": s3, "ch_backup": { "encrypt_key": "test_encrypt", }, diff --git a/tests/features/object_storage.feature b/tests/features/object_storage.feature new file mode 100644 index 00000000..a5aa3804 --- /dev/null +++ b/tests/features/object_storage.feature @@ -0,0 +1,117 @@ +Feature: chadmin object-storage commands + + Background: + Given default configuration + And a working s3 + And a working zookeeper + And a working clickhouse on clickhouse01 + And a working clickhouse on clickhouse02 + Given we have executed queries on clickhouse01 + """ + CREATE DATABASE IF NOT EXISTS test ON CLUSTER '{cluster}'; + + CREATE TABLE IF NOT EXISTS test.table_01 ON CLUSTER '{cluster}' (n Int32) + ENGINE = ReplicatedMergeTree('/tables/table_01', '{replica}') ORDER BY n + SETTINGS storage_policy = 'object_storage'; + + INSERT INTO test.table_01 (n) SELECT number FROM system.numbers LIMIT 10; + """ + Then S3 contains greater than 0 objects + + Scenario: Dry-run clean on one replica with guard period + When we execute command on clickhouse01 + """ + chadmin object-storage clean --dry-run + """ + Then we get response + """ + Would delete 0 objects from bucket [cloud-storage-test] + """ + When we execute command on clickhouse01 + """ + chadmin object-storage clean --to-time 0h --dry-run + """ + Then we get response matches + """ + Would delete [1-9][0-9]* objects from bucket \[cloud-storage-test\] + """ + + + Scenario: Dry-run clean on cluster with guard period + When we execute command on clickhouse01 + """ + chadmin object-storage clean --dry-run --on-cluster + """ + Then we get response + """ + Would delete 0 objects from bucket [cloud-storage-test] + """ + When we execute command on clickhouse01 + """ + chadmin object-storage clean --to-time 0h --dry-run --on-cluster + """ + Then we get response + """ + Would delete 0 objects from bucket [cloud-storage-test] + """ + + Scenario: Clean orphaned objects + When we put object in S3 + """ + bucket: cloud-storage-test + path: /data/orpaned_object.tsv + data: '1' + """ + When we execute command on clickhouse01 + """ + chadmin object-storage clean --dry-run --to-time 0h --on-cluster + """ + Then we get response + """ + Would delete 1 objects from bucket [cloud-storage-test] + """ + When we execute command on clickhouse01 + """ + chadmin object-storage clean --to-time 0h --on-cluster + """ + Then we get response + """ + Deleted 1 objects from bucket [cloud-storage-test] + """ + And path does not exist in S3 + """ + bucket: cloud-storage-test + path: /data/orpaned_object.tsv + """ + + Scenario: Clean many orphaned objects + When we put 100 objects in S3 + """ + bucket: cloud-storage-test + path: /data/orpaned_object.tsv + data: '1' + """ + When we execute command on clickhouse01 + """ + chadmin object-storage clean --dry-run --to-time 0h --on-cluster + """ + Then we get response + """ + Would delete 100 objects from bucket [cloud-storage-test] + """ + When we execute command on clickhouse01 + """ + chadmin object-storage clean --to-time 0h --on-cluster + """ + Then we get response + """ + Deleted 100 objects from bucket [cloud-storage-test] + """ + When we execute command on clickhouse01 + """ + chadmin object-storage clean --to-time 0h --dry-run --on-cluster + """ + Then we get response + """ + Would delete 0 objects from bucket [cloud-storage-test] + """ diff --git a/tests/images/clickhouse/config/config.xml b/tests/images/clickhouse/config/config.xml index 6f2ceb59..81844f3f 100644 --- a/tests/images/clickhouse/config/config.xml +++ b/tests/images/clickhouse/config/config.xml @@ -42,7 +42,7 @@ s3 - {{ conf.s3.endpoint }}/test/data/ + {{ conf.s3.endpoint }}/{{ conf.s3.bucket }}/data/ {{ conf.s3.access_key_id }} {{ conf.s3.access_secret_key }} @@ -85,5 +85,6 @@ {{ instance_name }}.{{ conf.network_name }} + cluster diff --git a/tests/modules/s3.py b/tests/modules/s3.py new file mode 100644 index 00000000..2d32c0d9 --- /dev/null +++ b/tests/modules/s3.py @@ -0,0 +1,96 @@ +""" +S3 client. +""" +import logging +from typing import List, Optional + +import boto3 +from botocore.client import Config +from botocore.errorfactory import ClientError + +from . import docker +from .typing import ContextT + + +class S3Client: + """ + S3 client. + """ + + def __init__(self, context: ContextT, bucket: Optional[str] = None) -> None: + config = context.conf["s3"] + boto_config = config["boto_config"] + self._s3_session = boto3.session.Session( + aws_access_key_id=config["access_key_id"], + aws_secret_access_key=config["access_secret_key"], + region_name=boto_config["region_name"], + ) + + host, port = docker.get_exposed_port( + docker.get_container(context, context.conf["s3"]["container"]), + context.conf["s3"]["port"], + ) + endpoint_url = f"http://{host}:{port}" + self._s3_client = self._s3_session.client( + service_name="s3", + endpoint_url=endpoint_url, + config=Config( + s3={ + "addressing_style": boto_config["addressing_style"], + "region_name": boto_config["region_name"], + } + ), + ) + + if bucket: + self._s3_bucket_name = bucket + else: + self._s3_bucket_name = config["bucket"] + + for module_logger in ("boto3", "botocore", "s3transfer", "urllib3"): + logging.getLogger(module_logger).setLevel(logging.CRITICAL) + + def upload_data(self, data: bytes, remote_path: str) -> None: + """ + Upload given bytes or file-like object. + """ + remote_path = remote_path.lstrip("/") + self._s3_client.put_object( + Body=data, Bucket=self._s3_bucket_name, Key=remote_path + ) + + def delete_data(self, remote_path: str) -> None: + """ + Delete file from storage. + """ + remote_path = remote_path.lstrip("/") + self._s3_client.delete_object(Bucket=self._s3_bucket_name, Key=remote_path) + + def path_exists(self, remote_path: str) -> bool: + """ + Check if remote path exists. + """ + try: + self._s3_client.head_object(Bucket=self._s3_bucket_name, Key=remote_path) + return True + except ClientError: + return False + + def list_objects(self, prefix: str) -> List[str]: + """ + List all objects with given prefix. + """ + contents = [] + paginator = self._s3_client.get_paginator("list_objects") + list_object_kwargs = dict(Bucket=self._s3_bucket_name, Prefix=prefix) + + for result in paginator.paginate(**list_object_kwargs): + if result.get("CommonPrefixes") is not None: + for dir_prefix in result.get("CommonPrefixes"): + contents.append(dir_prefix.get("Prefix")) + + if result.get("Contents") is not None: + for file_key in result.get("Contents"): + contents.append(file_key.get("Key")) + + return contents diff --git a/tests/steps/common.py b/tests/steps/common.py index 8ce6318c..24465553 100644 --- a/tests/steps/common.py +++ b/tests/steps/common.py @@ -6,7 +6,7 @@ import requests import yaml from behave import given, then, when -from hamcrest import assert_that, contains_string, equal_to, is_not +from hamcrest import assert_that, contains_string, equal_to, is_not, matches_regexp from modules import docker from modules.utils import merge @@ -56,6 +56,11 @@ def step_get_response_contains(context): assert_that(context.response, contains_string(context.text)) +@then("we get response matches") +def step_get_response_matches(context): + assert_that(context.response, matches_regexp(context.text)) + + @then("we get response not contains {entry:w}") def step_get_response_not_contains(context, entry): assert_that(context.response, is_not(contains_string(entry))) # type: ignore diff --git a/tests/steps/s3.py b/tests/steps/s3.py index 07113364..ea5ec507 100644 --- a/tests/steps/s3.py +++ b/tests/steps/s3.py @@ -2,13 +2,81 @@ Steps for interacting with S3. """ -from behave import given -from modules import minio +from behave import given, then, when +from hamcrest import assert_that, equal_to, greater_than +from modules import minio, s3 +from modules.steps import get_step_data -@given("a working s3") +@given("a working S3") def step_wait_for_s3_alive(context): """ Ensure that S3 is ready to accept incoming requests. """ minio.initialize(context) + + +@then("S3 contains {count:d} objects") +def step_s3_contains_files(context, count): + s3_client = s3.S3Client(context) + objects = s3_client.list_objects("/") + assert_that( + len(objects), + equal_to(count), + f"Objects count = {len(objects)}, expected {count}, objects {objects}", + ) + + +@then("S3 contains greater than {count:d} objects") +def step_s3_contains_greater_than_files(context, count): + s3_client = s3.S3Client(context) + objects = s3_client.list_objects("/") + assert_that( + len(objects), + greater_than(count), + f"Objects count = {len(objects)}, expected {count}, objects {objects}", + ) + + +@then("S3 bucket {bucket} contains {count:d} objects") +def step_cloud_storage_bucket_contains_files(context, bucket, count): + s3_client = s3.S3Client(context, bucket) + objects = s3_client.list_objects("/") + assert_that( + len(objects), + equal_to(count), + f"Objects count = {len(objects)}, expected {count}, objects {objects}", + ) + + +@when("we put object in S3") +def step_put_file_in_s3(context): + conf = get_step_data(context) + s3_client = s3.S3Client(context, conf["bucket"]) + s3_client.upload_data(conf["data"], conf["path"]) + assert s3_client.path_exists(conf["path"]) + + +@when("we put {count:d} objects in S3") +def step_put_file_count_in_s3(context, count): + conf = get_step_data(context) + s3_client = s3.S3Client(context, conf["bucket"]) + for i in range(count): + path = f"{conf['path']}-{i}" + s3_client.upload_data(conf["data"], path) + assert s3_client.path_exists(path) + + +@when("we delete object in S3") +def stop_delete_file_in_S3(context): + conf = get_step_data(context) + s3_client = s3.S3Client(context, conf["bucket"]) + s3_client.delete_data(conf["path"]) + assert not s3_client.path_exists(conf["path"]) + + +@then("Path does not exist in S3") +def step_create_file_in_s3(context): + conf = get_step_data(context) + s3_client = s3.S3Client(context, conf["bucket"]) + assert not s3_client.path_exists(conf["path"])