:titlesonly:
Assembly <Assembly.md>
Assembly quality assessment <Assembly-quality-assessment.md>
Synteny comparison <Synteny-comparison.md>
Annotation <Annotation.md>
RNA preprocessing <RNA-preprocessing.md>
RNA mapping and counting <RNA-mapping-and-counting.md>
Differential analysis <Differential-analysis.md>
Functional analysis (extra) <Functional-analysis.md>
Deeper differential analysis (extra) <Deeper-differential-analysis.md>
Comparative genomics (extra) <Comparative-genomics.md>
Identification of other sequences (extra) <Identification-of-other-sequences.md>